Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCH2	9651	broad.mit.edu	37	1	2430213	2430213	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:2430213A>G	uc001aji.1	+	18	2654	c.2380A>G	c.(2380-2382)ATT>GTT	p.I794V	PLCH2_uc010nyz.1_Missense_Mutation_p.I582V|PLCH2_uc009vle.1_Missense_Mutation_p.I546V|PLCH2_uc001ajj.1_Missense_Mutation_p.I582V|PLCH2_uc001ajk.1_Missense_Mutation_p.I582V|PLCH2_uc001ajl.1_5'UTR	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	794	C2.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		GGTGGAGATCATTGGGCTCCC	0.657000													12	11					0	0	0.001855	0	0
KIAA1522	57648	broad.mit.edu	37	1	33237860	33237860	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:33237860G>A	uc001bvv.2	+	6	3039	c.2903G>A	c.(2902-2904)CGC>CAC	p.R968H	KIAA1522_uc001bvu.1_Missense_Mutation_p.R1027H|KIAA1522_uc010ohm.1_Missense_Mutation_p.R979H|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	968	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CCTGTGGCCCGCAAGCCGTCT	0.662000													5	61					0	0	0.014758	0	0
HMGB4	127540	broad.mit.edu	37	1	34329977	34329977	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:34329977C>T	uc001bxp.2	+	2	1928	c.185C>T	c.(184-186)GCC>GTC	p.A62V	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_5'UTR	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	62						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AAATATGAAGCCCTGGCCAAA	0.463000													49	72					0	0	0.014410	0	0
SFPQ	6421	broad.mit.edu	37	1	35658464	35658464	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:35658464G>T	uc001bys.2	-	1	280	c.187C>A	c.(187-189)CCG>ACG	p.P63T	SFPQ_uc001byr.2_5'Flank	NM_005066	NP_005057	P23246	SFPQ_HUMAN	splicing factor proline/glutamine rich	63	Gln/Glu/Pro-rich.|Poly-Pro.				alternative nuclear mRNA splicing, via spliceosome|DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|nucleotide binding|protein binding|protein binding|RNA binding		SFPQ/TFE3(6)	kidney(4)|soft_tissue(2)|ovary(1)|skin(1)	8		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				TGTGGAGGCGGTGGCGGGATC	0.433000			T	TFE3	papillary renal cell								4	9					0.00024832	0.000256883	0.009096	1	0
SSBP3	23648	broad.mit.edu	37	1	54870254	54870254	+	Nonsense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:54870254C>T	uc001cxe.2	-	3	484	c.186G>A	c.(184-186)TGG>TGA	p.W62*	SSBP3_uc001cxf.2_Nonsense_Mutation_p.W62*|SSBP3_uc001cxg.2_Nonsense_Mutation_p.W62*	NM_145716	NP_663768	Q9BWW4	SSBP3_HUMAN	single stranded DNA binding protein 3 isoform a	62					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	single-stranded DNA binding				0						CTTACCACCACCACGAGTGCA	0.507000													17	37					0	0	0.006122	0	0
GLT25D2	23127	broad.mit.edu	37	1	183944269	183944269	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:183944269G>C	uc001gqr.2	-	3	826	c.454C>G	c.(454-456)CTT>GTT	p.L152V	GLT25D2_uc010poj.1_Missense_Mutation_p.L152V|GLT25D2_uc001gqs.2_Missense_Mutation_p.L32V	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	152					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						GCAGTTCGAAGGGCTGCCTGT	0.423000													29	50					0	0	0.010818	0	0
HMCN1	83872	broad.mit.edu	37	1	186083139	186083139	+	Silent	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:186083139G>A	uc001grq.1	+	73	11389	c.11160G>A	c.(11158-11160)CAG>CAA	p.Q3720Q		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3720	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GGGGCCCCCAGAGCCTTGTAA	0.423000													62	114					0	0	0.014410	0	0
AKR1C3	8644	broad.mit.edu	37	10	5139704	5139704	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr10:5139704G>C	uc001ihr.2	+	3	514	c.331G>C	c.(331-333)GTT>CTT	p.V111L	AKR1C3_uc010qap.1_Missense_Mutation_p.V88L|AKR1C3_uc010qaq.1_Missense_Mutation_p.V111L|AKR1C3_uc001ihu.2_Missense_Mutation_p.V111L	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	111					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	ATTGGACTATGTTGACCTCTA	0.403000													34	43					0	0	0.004289	0	0
TACR2	6865	broad.mit.edu	37	10	71175766	71175766	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr10:71175766A>T	uc001jpn.2	-	1	909	c.314T>A	c.(313-315)TTC>TAC	p.F105Y		NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	105	Extracellular (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	GAAGTAGCAGAAGGCACGGCC	0.552000													14	22					0	0	0.004990	0	0
MRPL17	63875	broad.mit.edu	37	11	6703594	6703594	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr11:6703594G>A	uc001men.2	-	3	388	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_022061	NP_071344	Q9NRX2	RM17_HUMAN	mitochondrial ribosomal protein L17 precursor	95					translation	ribosome	protein domain specific binding|structural constituent of ribosome				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTGTACCGAGGGGCCAGTACT	0.473000													39	73					0	0	0.008740	0	0
Unknown	0	broad.mit.edu	37	11	30902745	30902745	+	RNA	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr11:30902745G>T	uc001mss.1	-	15		c.2287C>A			uc009yjk.1_Silent_p.V1176V|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		ACACACAGATGACCATATCTC	0.453000													23	27					2.98393e-07	3.15946e-07	0.016522	1	0
DYNC2H1	79659	broad.mit.edu	37	11	102987369	102987369	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr11:102987369T>C	uc001pho.2	+	5	836	c.692T>C	c.(691-693)GTA>GCA	p.V231A	DYNC2H1_uc001phn.1_Missense_Mutation_p.V231A|DYNC2H1_uc009yxe.1_Missense_Mutation_p.V231A	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	231	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CAGGATGTTGTAGATGATGTG	0.343000													47	57					0	0	0.014410	0	0
FDXACB1	91893	broad.mit.edu	37	11	111749725	111749725	+	Silent	SNP	A	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr11:111749725A>G	uc001pmc.3	-	1	429	c.132T>C	c.(130-132)GAT>GAC	p.D44D	ALG9_uc010rwo.1_5'UTR|FDXACB1_uc009yyi.2_5'UTR|C11orf1_uc001pmd.2_5'Flank|C11orf1_uc001pme.2_5'Flank	NM_138378	NP_612387	Q9BRP7	FDXA1_HUMAN	ferredoxin-fold anticodon binding domain	44					phenylalanyl-tRNA aminoacylation|tRNA processing		ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0						AGGCCAGTGGATCCCGAGCCA	0.667000											OREG0021330	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	14					0	0	0.004482	0	0
GUCY2C	2984	broad.mit.edu	37	12	14772233	14772233	+	Silent	SNP	A	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:14772233A>C	uc001rcd.2	-	24	2924	c.2787T>G	c.(2785-2787)GCT>GCG	p.A929A		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	929	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CAACTCCAGCAGCACAGGGAC	0.483000													25	48					0	0	0.003954	0	0
CNTN1	1272	broad.mit.edu	37	12	41316146	41316146	+	Nonsense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:41316146C>T	uc001rmm.1	+	5	429	c.316C>T	c.(316-318)CAG>TAG	p.Q106*	CNTN1_uc009zjy.1_Nonsense_Mutation_p.Q106*|CNTN1_uc001rmn.1_Nonsense_Mutation_p.Q95*|CNTN1_uc001rmo.2_Nonsense_Mutation_p.Q106*	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	106	Ig-like C2-type 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CCCTGACAAACAGAAAGATGC	0.398000													34	41					0	0	0.012213	0	0
KIF5A	3798	broad.mit.edu	37	12	57975209	57975209	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:57975209C>T	uc001sor.1	+	25	2975	c.2767C>T	c.(2767-2769)CGG>TGG	p.R923W	KIF5A_uc010srr.1_Missense_Mutation_p.R834W	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	923	Globular.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						CAAACCCGTCCGGCCTGGCCA	0.547000													46	57					0	0	0.011902	0	0
NAV3	89795	broad.mit.edu	37	12	78604234	78604234	+	Silent	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:78604234C>T	uc001syp.2	+	40	7268	c.7095C>T	c.(7093-7095)TGC>TGT	p.C2365C	NAV3_uc001syo.2_Silent_p.C2343C|NAV3_uc010sub.1_Silent_p.C1822C|NAV3_uc009zsf.2_Silent_p.C1174C	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2365						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CACAAAGCTGCGACAGCGAAA	0.403000										HNSCC(70;0.22)			24	41					0	0	0.003330	0	0
KIAA1033	23325	broad.mit.edu	37	12	105527569	105527569	+	Silent	SNP	C	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:105527569C>G	uc001tld.2	+	14	1308	c.1221C>G	c.(1219-1221)GTC>GTG	p.V407V	KIAA1033_uc010swr.1_Silent_p.V407V|KIAA1033_uc010sws.1_Silent_p.V219V	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	407					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						CTTACTACGTCTTTGTGAGCT	0.323000													27	71					0	0	0.005443	0	0
KCTD4	386618	broad.mit.edu	37	13	45768535	45768535	+	Silent	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr13:45768535G>A	uc001uzx.3	-	2	572	c.168C>T	c.(166-168)GAC>GAT	p.D56D	GTF2F2_uc001uzv.2_Intron|GTF2F2_uc001uzw.2_Intron	NM_198404	NP_940686	Q8WVF5	KCTD4_HUMAN	potassium channel tetramerisation domain	56	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Lung NSC(96;6.55e-05)|Breast(139;0.00378)|Prostate(109;0.00438)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000249)|BRCA - Breast invasive adenocarcinoma(63;0.207)		CAAGGAAAGTGTCTGGGTACT	0.413000													51	103					0	0	0.014410	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50256253	50256253	+	Silent	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr14:50256253C>T	uc001wxc.2	-	27	2726	c.2658G>A	c.(2656-2658)CAG>CAA	p.Q886Q	SDCCAG1_uc010anj.1_Silent_p.Q886Q|SDCCAG1_uc001wwz.2_Silent_p.Q86Q|SDCCAG1_uc001wxa.2_Silent_p.Q166Q|SDCCAG1_uc010tqi.1_Silent_p.Q865Q|SDCCAG1_uc001wxe.2_Silent_p.Q844Q	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	886						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		CTTCTTCATCCTGGTCTTTGT	0.274000													13	33					0	0	0.004007	0	0
VRK1	7443	broad.mit.edu	37	14	97321567	97321567	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr14:97321567T>A	uc001yft.2	+	8	689	c.583T>A	c.(583-585)TTG>ATG	p.L195M		NM_003384	NP_003375	Q99986	VRK1_HUMAN	vaccinia related kinase 1	195	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity			large_intestine(1)|stomach(1)	2		Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.234)		ATAGGTGTACTTGGTAGATTA	0.388000													38	47					0	0	0.007835	0	0
DUOX1	53905	broad.mit.edu	37	15	45456067	45456068	+	Missense_Mutation	DNP	GT	TA	TA			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr15:45456067_45456068GT>TA	uc001zus.1	+	34	4830_4831	c.4484_4485GT>TA	c.(4483-4485)CGT>CTA	p.R1495L	DUOX1_uc001zut.1_Missense_Mutation_p.R1495L|DUOX1_uc010bee.1_Missense_Mutation_p.R875L	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1495	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CACTTTGGCCGTCCCCCCTTTG	0.550000													51	67					0	0	0.004672	0	0
ZNF609	23060	broad.mit.edu	37	15	64791991	64791991	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr15:64791991T>C	uc002ann.2	+	1	373	c.373T>C	c.(373-375)TCA>CCA	p.S125P	ZNF609_uc010bgy.2_Missense_Mutation_p.S125P	NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	125						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GCAGGGGCGCTCAGGAGATGG	0.567000													16	38					0	0	0.003163	0	0
CLCN7	1186	broad.mit.edu	37	16	1505793	1505793	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr16:1505793C>T	uc002clv.2	-	11	1030	c.920G>A	c.(919-921)GGG>GAG	p.G307E	CLCN7_uc002clw.2_Missense_Mutation_p.G283E	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	307						integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				GAACAGGACCCCACCTGGAAG	0.642000													34	28					0	0	0.006230	0	0
CIAPIN1	57019	broad.mit.edu	37	16	57463170	57463170	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr16:57463170C>T	uc002ell.1	-	9	1022	c.851G>A	c.(850-852)CGC>CAC	p.R284H	CIAPIN1_uc002elk.1_RNA|CIAPIN1_uc002elm.1_Missense_Mutation_p.R271H|CIAPIN1_uc002eln.1_Silent_p.P245P|CIAPIN1_uc010cda.1_3'UTR|CIAPIN1_uc002elo.1_Silent_p.P218P	NM_020313	NP_064709	Q6FI81	CPIN1_HUMAN	cytokine induced apoptosis inhibitor 1	284					anti-apoptosis|apoptosis	cytoplasm|nucleolus					0						GCTGGCACAGCGGAAGGCATC	0.532000													31	26					0	0	0.015359	0	0
DNAH2	146754	broad.mit.edu	37	17	7727461	7727461	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:7727461G>A	uc002giu.1	+	75	11515	c.11501G>A	c.(11500-11502)CGA>CAA	p.R3834Q	DNAH2_uc010cnm.1_Missense_Mutation_p.R772Q	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3834	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCAACCCCACGATCCCCACTC	0.597000													22	134					0	0	0.003330	0	0
EFCAB5	374786	broad.mit.edu	37	17	28407885	28407885	+	Silent	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:28407885G>C	uc002het.2	+	17	3504	c.3312G>C	c.(3310-3312)CTG>CTC	p.L1104L	EFCAB5_uc010cse.2_Silent_p.L859L|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1104							calcium ion binding			ovary(1)|skin(1)	2						GTTCATTCCTGGCTCTGCCTC	0.438000													19	32					0	0	0.012319	0	0
HELZ	9931	broad.mit.edu	37	17	65214853	65214853	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:65214853T>G	uc010wqk.1	-	4	255	c.68A>C	c.(67-69)GAA>GCA	p.E23A	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.E23A|HELZ_uc010des.1_Missense_Mutation_p.E23A	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GAGGGCCATTTCATAGTCCTG	0.473000													29	94					0	0	0.010818	0	0
COG1	9382	broad.mit.edu	37	17	71199203	71199203	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:71199203C>A	uc002jjg.2	+	8	2174	c.2138C>A	c.(2137-2139)GCC>GAC	p.A713D	COG1_uc002jjh.2_Missense_Mutation_p.A713D|COG1_uc002jjf.1_Missense_Mutation_p.A713D	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	713					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			CTGGCCACAGCCACCAGCTGG	0.512000													47	28					4.44712e-29	5.26633e-29	0.014410	1	0
FDXR	2232	broad.mit.edu	37	17	72861043	72861043	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:72861043A>C	uc002jly.2	-	7	707	c.620T>G	c.(619-621)ATC>AGC	p.I207S	FDXR_uc010wri.1_Missense_Mutation_p.I155S|FDXR_uc010wrj.1_Missense_Mutation_p.I205S|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Missense_Mutation_p.I213S|FDXR_uc002jmc.2_Missense_Mutation_p.I208S|FDXR_uc010wrk.1_Missense_Mutation_p.I238S|FDXR_uc010wrl.1_Missense_Mutation_p.I250S|FDXR_uc002jma.2_Missense_Mutation_p.I208S|FDXR_uc010wrm.1_Missense_Mutation_p.I167S|FDXR_uc002jlz.2_Missense_Mutation_p.I199S|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	207					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCCTTCGTGATGTCCGTTCT	0.592000											OREG0024720	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	41					0	0	0.014410	0	0
EMILIN2	84034	broad.mit.edu	37	18	2913257	2913257	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr18:2913257G>T	uc002kln.2	+	8	3176	c.3017G>T	c.(3016-3018)GGG>GTG	p.G1006V		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	1006	C1q.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GGGGGCCCGGGGGCATTCCAC	0.607000													13	31					0.00136819	0.00139929	0.013537	1	0
SS18	6760	broad.mit.edu	37	18	23670482	23670483	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr18:23670482_23670483GA>AG	uc002kvm.2	-	1	129_130	c.51_52TC>CT	c.(49-54)ACTCCC>ACCTCC	p.P18S	SS18_uc002kvn.2_Missense_Mutation_p.P18S|SS18_uc010xbf.1_5'UTR|SS18_uc010xbg.1_5'UTR|SS18_uc010xbh.1_5'UTR|SS18_uc010xbi.1_Intron|SS18_uc010dlz.1_5'UTR	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	18	Transcriptional activation.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					ATCGCAGCGGGAGTGATCTCCC	0.683000			T	SSX1| SSX2	synovial sarcoma								3	5					0	0	0.004672	0	0
C18orf34	374864	broad.mit.edu	37	18	30926327	30926327	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr18:30926327T>C	uc002kxn.2	-	8	648	c.506A>G	c.(505-507)GAG>GGG	p.E169G	C18orf34_uc010xbr.1_Missense_Mutation_p.E169G|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E169G|C18orf34_uc002kxp.2_Missense_Mutation_p.E169G	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	169	Potential.									ovary(1)	1						ACGAATGGCCTCTGAGAGCAA	0.343000													21	40					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9059472	9059472	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:9059472G>T	uc002mkp.2	-	3	28178	c.27974C>A	c.(27973-27975)GCC>GAC	p.A9325D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9327	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAAGAGATGGCTTCTGTCCT	0.507000													60	60					2.01871e-26	2.35953e-26	0.014410	1	0
ZNF317	57693	broad.mit.edu	37	19	9271676	9271676	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:9271676G>A	uc002mku.2	+	7	1630	c.1355G>A	c.(1354-1356)GGG>GAG	p.G452E	ZNF317_uc002mkv.2_Missense_Mutation_p.G311E|ZNF317_uc002mkw.2_Missense_Mutation_p.G420E|ZNF317_uc002mkx.2_Missense_Mutation_p.G367E|ZNF317_uc002mky.2_Missense_Mutation_p.G335E	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	452	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATCTCTGCGGGAAAGCTTTC	0.547000													18	35					0	0	0.007413	0	0
C19orf57	79173	broad.mit.edu	37	19	13996869	13996869	+	Splice_Site	SNP	C	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:13996869C>G	uc002mxl.1	-	7	1728	c.1669_splice	c.e7-1	p.L557_splice	C19orf57_uc002mxk.1_Splice_Site_p.L439_splice|C19orf57_uc002mxm.1_Splice_Site_p.L132_splice	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173						multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			AAGGAAAGAGCTGGAAAGAGA	0.632000													18	32					0	0	0.007413	0	0
CD22	933	broad.mit.edu	37	19	35828752	35828752	+	Silent	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:35828752C>T	uc010edt.2	+	5	890	c.813C>T	c.(811-813)AAC>AAT	p.N271N	CD22_uc010xst.1_Silent_p.N99N|CD22_uc010edu.2_Silent_p.N271N|CD22_uc010edv.2_Silent_p.N271N|CD22_uc002nzb.3_Intron|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	271	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GCAGCAGCAACCCGGAGTACA	0.567000													30	37					0	0	0.007291	0	0
SCAF1	58506	broad.mit.edu	37	19	50161552	50161552	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:50161552A>C	uc002poq.2	+	11	3959	c.3835A>C	c.(3835-3837)AAG>CAG	p.K1279Q		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1279	Necessary for interaction with the CTD domain of POLR2A.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		CTACTTCCGCAAGCACGGTCG	0.701000													9	9					0	0	0.006214	0	0
LILRB1	10859	broad.mit.edu	37	19	55144006	55144006	+	Silent	SNP	C	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:55144006C>A	uc002qgj.2	+	7	1093	c.753C>A	c.(751-753)GGC>GGA	p.G251G	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.G251G|LILRB1_uc002qgk.2_Silent_p.G251G|LILRB1_uc002qgm.2_Silent_p.G251G|LILRB1_uc010erq.2_Silent_p.G251G|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	251	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CTGATGCTGGCTACAACAGAT	0.572000										HNSCC(37;0.09)			36	58					2.2871e-25	2.63896e-25	0.007835	1	0
ZNF543	125919	broad.mit.edu	37	19	57839968	57839968	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:57839968G>A	uc002qoi.1	+	4	1483	c.1138G>A	c.(1138-1140)GCA>ACA	p.A380T		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	380	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TTGCGAGAGTGCAGACCTCAT	0.512000													29	39					0	0	0.010818	0	0
GCC2	9648	broad.mit.edu	37	2	109109239	109109239	+	Silent	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr2:109109239C>T	uc002tec.2	+	19	4594	c.4440C>T	c.(4438-4440)ACC>ACT	p.T1480T	GCC2_uc002ted.2_Silent_p.T1379T	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1480	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ATGAACCGACCACAAGAAGTA	0.373000													19	20					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179611391	179611391	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr2:179611391G>C	uc002unb.2	-	46	15960	c.15736C>G	c.(15736-15738)CAA>GAA	p.Q5246E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCCTTTTTGAATGTTAGAA	0.388000													36	43					0	0	0.004878	0	0
GPR1	2825	broad.mit.edu	37	2	207040930	207040930	+	Silent	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr2:207040930G>A	uc002vbl.3	-	3	1428	c.1042C>T	c.(1042-1044)CTG>TTG	p.L348L	GPR1_uc010fue.2_Silent_p.L348L|GPR1_uc010fuf.2_Silent_p.L348L	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	348	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		AGGAGACACAGATTCTTGGTT	0.428000													17	27					0	0	0.004007	0	0
RBM44	375316	broad.mit.edu	37	2	238722326	238722326	+	Splice_Site	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr2:238722326G>T	uc002vxi.3	+	2	208	c.76_splice	c.e2+1	p.D26_splice		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44								nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CTCCAAAAAGGTAAGGGTCTA	0.448000													13	12					6.72482e-11	7.47203e-11	0.003163	1	0
GDF5	8200	broad.mit.edu	37	20	34021936	34021936	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr20:34021936G>T	uc002xck.1	-	2	1596	c.1277C>A	c.(1276-1278)GCT>GAT	p.A426D	GDF5_uc010gfc.1_Missense_Mutation_p.A426D|uc002xcj.2_Missense_Mutation_p.S116I|GDF5_uc010zvc.1_Missense_Mutation_p.A426D	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	426					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GCAGTGGAAAGCCTCGTACTC	0.582000													25	37					1.85244e-09	2.00867e-09	0.003330	1	0
ZNF335	63925	broad.mit.edu	37	20	44578919	44578919	+	Silent	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr20:44578919G>C	uc002xqw.2	-	22	3549	c.3426C>G	c.(3424-3426)ACC>ACG	p.T1142T	ZNF335_uc002xqv.2_Silent_p.T254T|ZNF335_uc010zxk.1_Silent_p.T987T	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	1142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				TTGGGGTCTGGGTAGGGGCCC	0.612000													25	56					0	0	0.003954	0	0
PARD6B	84612	broad.mit.edu	37	20	49366295	49366295	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr20:49366295A>G	uc002xvo.2	+	3	632	c.389A>G	c.(388-390)CAT>CGT	p.H130R		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	130	Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						AAAAAGCCACATATAGTCATT	0.403000													13	26					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	22	18844745	18844745	+	RNA	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr22:18844745C>T	uc002zoe.2	+	4		c.1999C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GTTCCCACACCTCACTTTTCA	0.572000													4	10					0	0	0.009096	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951203	30951203	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr22:30951203C>G	uc003aig.1	-	4	1149	c.1009G>C	c.(1009-1011)GCC>CCC	p.A337P	GAL3ST1_uc003aih.1_Missense_Mutation_p.A337P|GAL3ST1_uc003aii.1_Missense_Mutation_p.A337P|GAL3ST1_uc010gvz.1_Missense_Mutation_p.A337P	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	337	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						CGCTCGTTGGCATGGCGCAGG	0.721000													11	10					0	0	0.010729	0	0
CARD10	29775	broad.mit.edu	37	22	37914027	37914027	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr22:37914027G>C	uc003asx.1	-	2	327	c.324C>G	c.(322-324)TTC>TTG	p.F108L	CARD10_uc003ast.1_RNA|CARD10_uc003asy.1_Missense_Mutation_p.F108L	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	108	CARD.				activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					TGAGCAGCGTGAAGTGTTCGG	0.622000													12	41					0	0	0.010729	0	0
RAD54L2	23132	broad.mit.edu	37	3	51697207	51697207	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr3:51697207C>G	uc011bdt.1	+	22	4300	c.4175C>G	c.(4174-4176)TCC>TGC	p.S1392C	RAD54L2_uc003dbh.2_Missense_Mutation_p.S981C|RAD54L2_uc011bdu.1_Missense_Mutation_p.S1086C|RAD54L2_uc003dbj.2_Missense_Mutation_p.S718C	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1392						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CCACTCCTGTCCGAGCCGAGG	0.567000													40	59					0	0	0.009718	0	0
MITF	4286	broad.mit.edu	37	3	69928532	69928532	+	Nonsense_Mutation	SNP	A	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr3:69928532A>T	uc003dnz.2	+	2	468	c.352A>T	c.(352-354)AAG>TAG	p.K118*	MITF_uc011bgb.1_Nonsense_Mutation_p.K66*|MITF_uc003doa.2_Nonsense_Mutation_p.K117*|MITF_uc003dob.2_Nonsense_Mutation_p.K102*|MITF_uc003dod.2_Nonsense_Mutation_p.K93*|MITF_uc003doc.1_RNA	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	118					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		GGAAGTCCTTAAGGTACGTGA	0.478000			A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						17	15					0	0	0.006122	0	0
FAM55C	91775	broad.mit.edu	37	3	101520832	101520832	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr3:101520832A>T	uc003dvn.2	+	5	1484	c.847A>T	c.(847-849)AGT>TGT	p.S283C	FAM55C_uc010hpn.2_Missense_Mutation_p.S283C	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	283						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						TTTCTTCCAGAGGTATGTACT	0.443000													54	83					0	0	0.014410	0	0
AP2M1	1173	broad.mit.edu	37	3	183898969	183898969	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr3:183898969T>C	uc011bqx.1	+	7	819	c.662T>C	c.(661-663)GTT>GCT	p.V221A	AP2M1_uc003fmw.2_Missense_Mutation_p.V219A|AP2M1_uc003fmx.2_Intron|AP2M1_uc003fmy.2_Missense_Mutation_p.V219A|AP2M1_uc011bqy.1_Missense_Mutation_p.V91A|AP2M1_uc011bqz.1_Missense_Mutation_p.V37A	NM_004068	NP_004059	Q96CW1	AP2M1_HUMAN	adaptor-related protein complex 2, mu 1 subunit	221	MHD.				axon guidance|cellular membrane organization|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|clathrin coat of coated pit|cytosol|endocytic vesicle membrane|peroxisomal membrane	lipid binding|protein binding|transporter activity				0	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.92e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GACAAGATTGTTATTGAAAAG	0.562000													69	91					0	0	0.014410	0	0
PDGFRA	5156	broad.mit.edu	37	4	54266007	54266007	+	Splice_Site	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr4:54266007G>C	uc003haa.2	+	10	1001	c.815_splice	c.e10+1	p.R272_splice	FIP1L1_uc003gzx.3_Splice_Site_p.R257_splice|FIP1L1_uc011bzt.1_Splice_Site_p.R272_splice|FIP1L1_uc003gzy.2_Splice_Site_p.R272_splice|FIP1L1_uc011bzu.1_Splice_Site_p.R257_splice|FIP1L1_uc003gzz.2_Splice_Site_p.R234_splice|FIP1L1_uc003hab.2_Splice_Site_p.R237_splice|FIP1L1_uc003hac.2_Splice_Site_p.R53_splice|FIP1L1_uc010ign.2_Splice_Site	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha						cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CACCGAGCAGGTTAGTTACAT	0.363000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			26	38					0	0	0.007291	0	0
PLRG1	5356	broad.mit.edu	37	4	155465648	155465648	+	Silent	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr4:155465648T>C	uc003iny.2	-	7	606	c.543A>G	c.(541-543)AAA>AAG	p.K181K	PLRG1_uc003inz.2_Silent_p.K172K|PLRG1_uc011cil.1_Silent_p.K20K	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	181						catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				TTGTAGGGGCTTTTTTAGCCA	0.408000													20	30					0	0	0.016522	0	0
PCSK1	5122	broad.mit.edu	37	5	95761622	95761622	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr5:95761622C>G	uc003kls.1	-	3	504	c.298G>C	c.(298-300)GAA>CAA	p.E100Q		NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	100					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TACTGTTGTTCAGCCCATATC	0.383000													13	21					0	0	0.001855	0	0
FAM71B	153745	broad.mit.edu	37	5	156590018	156590018	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr5:156590018G>C	uc003lwn.2	-	2	1358	c.1258C>G	c.(1258-1260)CCC>GCC	p.P420A		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	420						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCAGCACTGGGCTGGGAAACT	0.488000													48	52					0	0	0.014410	0	0
BAK1	578	broad.mit.edu	37	6	33543199	33543199	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr6:33543199G>A	uc003oes.2	-	4	526	c.226C>T	c.(226-228)CGG>TGG	p.R76W	BAK1_uc003oer.2_Missense_Mutation_p.R6W|BAK1_uc003oet.2_RNA|BAK1_uc010jvb.2_Missense_Mutation_p.R76W|BAK1_uc003oeu.2_Missense_Mutation_p.R17W|BAK1_uc011drj.1_Missense_Mutation_p.R76W	NM_001188	NP_001179	Q16611	BAK_HUMAN	BCL2-antagonist/killer 1	76	BH3.				activation of pro-apoptotic gene products|cellular response to mechanical stimulus|cellular response to UV|establishment or maintenance of transmembrane electrochemical gradient|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|regulation of mitochondrial membrane permeability|regulation of mitochondrial membrane potential|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|release of cytochrome c from mitochondria	integral to mitochondrial outer membrane|pore complex	metal ion binding|protein heterodimerization activity			ovary(1)	1						GCGAGCTGCCGTCCCACCTGC	0.617000													5	62					0	0	0.014758	0	0
DDO	8528	broad.mit.edu	37	6	110734538	110734538	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr6:110734538G>A	uc003puc.2	-	2	216	c.212C>T	c.(211-213)ACC>ATC	p.T71I	C6orf186_uc003pub.2_5'Flank|DDO_uc003pud.2_Missense_Mutation_p.T71I	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	43	FAD (By similarity).				aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		CACATCACTGGTGGTATCTGG	0.493000													50	66					0	0	0.014410	0	0
SYNE1	23345	broad.mit.edu	37	6	152631610	152631610	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr6:152631610G>A	uc010kiw.2	-	89	17542	c.16940C>T	c.(16939-16941)GCC>GTC	p.A5647V	SYNE1_uc010kiv.2_Missense_Mutation_p.A171V|SYNE1_uc003qos.3_Missense_Mutation_p.A171V|SYNE1_uc003qot.3_Missense_Mutation_p.A5576V|SYNE1_uc003qou.3_Missense_Mutation_p.A5647V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5647	Spectrin 18.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGCTCCAAGGCAGCTTGTAA	0.433000										HNSCC(10;0.0054)			19	26					0	0	0.006122	0	0
ACTB	60	broad.mit.edu	37	7	5568977	5568977	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr7:5568977T>C	uc003sos.3	-	2	214	c.178A>G	c.(178-180)AGC>GGC	p.S60G	ACTB_uc003sor.3_5'UTR|ACTB_uc003sot.3_Missense_Mutation_p.S60G|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	60					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CCTCTCTTGCTCTGGGCCTCG	0.587000													85	68					0	0	0.014410	0	0
ANKMY2	57037	broad.mit.edu	37	7	16650259	16650260	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr7:16650259_16650260TC>CT	uc003sti.2	-	6	860_861	c.660_661GA>AG	c.(658-663)ATGAAG>ATAGAG	p.220_221MK>IE	ANKMY2_uc010ktz.2_RNA	NM_020319	NP_064715	Q8IV38	ANKY2_HUMAN	ankyrin repeat and MYND domain containing 2	220_221						cilium	zinc ion binding			central_nervous_system(1)	1	Lung NSC(10;0.103)|all_lung(11;0.204)			UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		TAATGCATCTTCATAGCCAATA	0.351000													30	36					0	0	0.004672	0	0
RASA4P	401331	broad.mit.edu	37	7	44073912	44073912	+	Splice_Site	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr7:44073912T>C	uc011kbk.1	-	6	637	c.532_splice	c.e6-1	p.C178_splice	RASA4P_uc003tji.2_Splice_Site|RASA4P_uc010kxx.2_Splice_Site	NM_006989	NP_008920			RAS p21 protein activator 4 isoform 1												0						ATTCACACACTGCAGGGGACA	0.353000													18	11					0	0	0.010504	0	0
PCLO	27445	broad.mit.edu	37	7	82584714	82584714	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr7:82584714T>A	uc003uhx.2	-	5	5844	c.5555A>T	c.(5554-5556)CAT>CTT	p.H1852L	PCLO_uc003uhv.2_Missense_Mutation_p.H1852L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1783					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGAAGATCTATGGAGCTCCTC	0.408000													59	123					0	0	0.014410	0	0
WDR91	29062	broad.mit.edu	37	7	134871027	134871027	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr7:134871027A>T	uc003vsp.2	-	15	2182	c.2120T>A	c.(2119-2121)CTA>CAA	p.L707Q	WDR91_uc010lmq.2_Missense_Mutation_p.L296Q|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	707										breast(2)|ovary(1)|skin(1)	4						GTGGCCACCTAGGCTCAAGCA	0.587000													32	32					0	0	0.013726	0	0
EFR3A	23167	broad.mit.edu	37	8	132968018	132968018	+	Silent	SNP	C	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr8:132968018C>T	uc003yte.2	+	7	843	c.642C>T	c.(640-642)CGC>CGT	p.R214R		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	214						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TTTTTAGTCGCATAGGCCCTC	0.358000													21	49					0	0	0.003330	0	0
KIAA2026	158358	broad.mit.edu	37	9	5921575	5921575	+	Missense_Mutation	SNP	A	C	C	rs76173761	by1000genomes	TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr9:5921575A>C	uc003zjq.3	-	8	4637	c.4421T>G	c.(4420-4422)ATG>AGG	p.M1474R	KIAA2026_uc010mht.2_Missense_Mutation_p.M649R	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1474										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TGATACCAGCATAAGTTTCTG	0.408000													21	24					0	0	0.016522	0	0
USP20	10868	broad.mit.edu	37	9	132623219	132623219	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr9:132623219T>C	uc004bys.2	+	7	545	c.334T>C	c.(334-336)TCC>CCC	p.S112P	USP20_uc004byr.2_Missense_Mutation_p.S112P|USP20_uc004byt.1_Missense_Mutation_p.S112P	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	112					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				AACACAGGACTCCCCGCCACC	0.567000													61	124					0	0	0.014410	0	0
MPP1	4354	broad.mit.edu	37	X	154033610	154033610	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chrX:154033610G>T	uc004fmp.1	-	1	154	c.39C>A	c.(37-39)AGC>AGA	p.S13R	MPP1_uc010nvg.1_Missense_Mutation_p.S13R|MPP1_uc011mzv.1_5'UTR|MPP1_uc004fmq.1_5'UTR|MPP1_uc011mzw.1_Missense_Mutation_p.S13R|MPP1_uc010nvh.1_Missense_Mutation_p.S13R	NM_002436	NP_002427	Q00013	EM55_HUMAN	palmitoylated membrane protein 1	13					regulation of neutrophil chemotaxis|signal transduction	integral to plasma membrane|membrane fraction|stereocilium	guanylate kinase activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCGTGTGCATGCTGCCCCCAC	0.667000													4	0					2.0095e-06	2.10296e-06	0.001984	1	0
LIX1L	128077	broad.mit.edu	37	1	145497429	145497430	+	Frame_Shift_Ins	INS	-	T	T			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr1:145497429_145497430insT	uc001enr.2	+	4	708_709	c.634_635insT	c.(634-636)ATTfs	p.I212fs	NBPF10_uc001emp.3_Intron|LIX1L_uc009wiu.1_5'Flank	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	212										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AAATACAGGGATTGGTGCCTTC	0.431													15	28	---	---	---	---					
MANSC1	54682	broad.mit.edu	37	12	12483592	12483592	+	Frame_Shift_Del	DEL	T	-	-			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:12483592delT	uc001rai.1	-	4	923	c.665delA	c.(664-666)AATfs	p.N222fs	MANSC1_uc010shm.1_Frame_Shift_Del_p.N156fs|MANSC1_uc001raj.1_Frame_Shift_Del_p.N188fs|MANSC1_uc009zht.1_Frame_Shift_Del_p.N141fs	NM_018050	NP_060520	Q9H8J5	MANS1_HUMAN	MANSC domain containing 1 precursor	222	Extracellular (Potential).					integral to membrane					0		Prostate(47;0.0865)		BRCA - Breast invasive adenocarcinoma(232;0.185)		CGCACTCACATTTTCAGGCAG	0.502													37	72	---	---	---	---					
ABCB9	23457	broad.mit.edu	37	12	123429030	123429030	+	Frame_Shift_Del	DEL	A	-	-			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr12:123429030delA	uc001udm.3	-	7	1598	c.1288delT	c.(1288-1290)TACfs	p.Y430fs	ABCB9_uc010tai.1_Frame_Shift_Del_p.Y37fs|ABCB9_uc009zxr.2_Intron|ABCB9_uc001udo.3_Intron|ABCB9_uc010taj.1_Frame_Shift_Del_p.Y430fs|ABCB9_uc001udp.2_Frame_Shift_Del_p.Y430fs|ABCB9_uc001udq.2_Frame_Shift_Del_p.Y212fs|ABCB9_uc001udr.2_Frame_Shift_Del_p.Y430fs	NM_019625	NP_062571	Q9NP78	ABCB9_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	430	Helical; (Potential).|ABC transmembrane type-1.				positive regulation of T cell mediated cytotoxicity|protein transport	lysosomal membrane|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.84e-05)|Epithelial(86;0.000152)|BRCA - Breast invasive adenocarcinoma(302;0.111)		TGGCCCCCGTAGTAGAGGATG	0.592													58	126	---	---	---	---					
FAM82A2	55177	broad.mit.edu	37	15	41037304	41037305	+	Frame_Shift_Ins	INS	-	GCACT	GCACT			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr15:41037304_41037305insGCACT	uc001zmo.1	-	5	821_822	c.677_678insAGTGC	c.(676-678)GCCfs	p.A226fs	FAM82A2_uc001zmp.1_Frame_Shift_Ins_p.A226fs|FAM82A2_uc001zmq.1_Frame_Shift_Ins_p.A226fs	NM_018145	NP_060615	Q96TC7	RMD3_HUMAN	family with sequence similarity 82, member A2	226					apoptosis|cell differentiation	integral to membrane|microtubule|mitochondrial membrane|nucleus|spindle pole	protein binding				0						CAGCCTCCAGGGCACTGGAGGC	0.599													16	47	---	---	---	---					
DUOX1	53905	broad.mit.edu	37	15	45453182	45453182	+	Frame_Shift_Del	DEL	C	-	-			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr15:45453182delC	uc001zus.1	+	30	4196	c.3850delC	c.(3850-3852)CCCfs	p.P1284fs	DUOX1_uc001zut.1_Frame_Shift_Del_p.P1284fs|DUOX1_uc010bee.1_Frame_Shift_Del_p.P664fs	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	1284	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		GGAGCTGCTGCCCTCAGGTAC	0.617													22	39	---	---	---	---					
KRT32	3882	broad.mit.edu	37	17	39622089	39622090	+	Frame_Shift_Ins	INS	-	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:39622089_39622090insC	uc002hwr.2	-	3	704_705	c.643_644insG	c.(643-645)GACfs	p.D215fs		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	215	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				GGCCTCCAGGTCAGCCTTGCAC	0.604													85	62	---	---	---	---					
ITGB4	3691	broad.mit.edu	37	17	73752854	73752855	+	In_Frame_Ins	INS	-	GCTGCA	GCTGCA			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr17:73752854_73752855insGCTGCA	uc002jpg.2	+	37	5154_5155	c.4967_4968insGCTGCA	c.(4966-4968)TCG>TCGCTGCAG	p.1658_1659insLQ	ITGB4_uc002jph.2_In_Frame_Ins_p.1588_1589insLQ|ITGB4_uc002jpi.3_In_Frame_Ins_p.1588_1589insLQ|ITGB4_uc002jpj.2_In_Frame_Ins_p.1641_1642insLQ|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1658_1659	Fibronectin type-III 4.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGCCCAGACTCGCTGCAGCTGA	0.658													35	113	---	---	---	---					
EXOC3L2	90332	broad.mit.edu	37	19	45720794	45720794	+	Frame_Shift_Del	DEL	G	-	-			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr19:45720794delG	uc002pay.1	-	8	852	c.811delC	c.(811-813)CGGfs	p.R271fs		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	271	Potential.									ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		ACCAGCCGCCGGAACAGCCTC	0.701													10	9	---	---	---	---					
BAI3	577	broad.mit.edu	37	6	69666026	69666027	+	Frame_Shift_Ins	INS	-	A	A	rs141698131		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chr6:69666026_69666027insA	uc003pev.3	+	7	1754_1755	c.1306_1307insA	c.(1306-1308)GAAfs	p.E436fs	BAI3_uc010kak.2_Frame_Shift_Ins_p.E436fs	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	436	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TGGAGGCTCCGAATGCAGAGGG	0.554													22	31	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	10946	10947	+	RNA	INS	-	C	C			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chrM:10946_10947insC	uc004cov.3	+	1		c.369_370insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ACCCCCTAACAACCCCCCTCCT	0.455													105	24	---	---	---	---					
KDM6A	7403	broad.mit.edu	37	X	44870257	44870257	+	Frame_Shift_Del	DEL	T	-	-			TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	g.chrX:44870257delT	uc004dge.3	+	5	811	c.436delT	c.(436-438)TTTfs	p.F146fs	KDM6A_uc010nhk.2_Frame_Shift_Del_p.F146fs|KDM6A_uc011mkz.1_Frame_Shift_Del_p.F146fs|KDM6A_uc011mla.1_Frame_Shift_Del_p.F146fs|KDM6A_uc011mlb.1_Frame_Shift_Del_p.F146fs|KDM6A_uc011mlc.1_5'UTR	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	146	TPR 2.				histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.0(2)|p.?(1)		kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TTATAATGCATTTCAGTGGTA	0.323			D|N|F|S		renal|oesophageal SCC|MM								13	7	---	---	---	---					
