Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8420197	8420197	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr1:8420197G>C	uc001ape.2	-	19	4180	c.3370C>G	c.(3370-3372)CCC>GCC	p.P1124A	RERE_uc001apf.2_Missense_Mutation_p.P1124A|RERE_uc010nzx.1_Missense_Mutation_p.P856A|RERE_uc001apd.2_Missense_Mutation_p.P570A	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1124					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GCGTGACTGGGGGTGTCCACC	0.682000													4	11					0	0	0.014758	0	0
SLC6A17	388662	broad.mit.edu	37	1	110709565	110709565	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr1:110709565G>A	uc009wfq.2	+	2	475	c.14G>A	c.(13-15)AGC>AAC	p.S5N		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	5	Cytoplasmic (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CCGAAGAACAGCAAAGTGACC	0.577000													8	24					0	0	0.008291	0	0
ELF3	1999	broad.mit.edu	37	1	201984378	201984378	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr1:201984378G>C	uc001gxg.3	+	8	4235	c.1043G>C	c.(1042-1044)CGG>CCG	p.R348P	ELF3_uc001gxi.3_Missense_Mutation_p.R348P|ELF3_uc001gxh.3_Missense_Mutation_p.R348P	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	348	ETS.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GTGGATGGCCGGCGACTCGTC	0.557000													11	42					0	0	0.013537	0	0
CAPN9	10753	broad.mit.edu	37	1	230883264	230883264	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr1:230883264C>G	uc001htz.1	+	1	135	c.22C>G	c.(22-24)CCA>GCA	p.P8A	CAPN9_uc009xfg.1_Missense_Mutation_p.P8A|CAPN9_uc001hua.1_Missense_Mutation_p.P8A	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	8					digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				CTACCGGGCCCCAGGGCCTCA	0.622000													34	86					0	0	0.023175	0	0
C10orf54	64115	broad.mit.edu	37	10	73521465	73521465	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr10:73521465C>T	uc001jsd.2	-	2	542	c.401G>A	c.(400-402)CGC>CAC	p.R134H	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Missense_Mutation_p.R2H|C10orf54_uc009xqm.2_Intron|C10orf54_uc001jsf.1_Missense_Mutation_p.R134H	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	134	Ig-like.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GGTCAGGTTGCGCATGGTGAT	0.647000													3	47					0	0	0.004672	0	0
C10orf62	414157	broad.mit.edu	37	10	99349694	99349694	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr10:99349694T>A	uc001koa.2	+	1	211	c.40T>A	c.(40-42)TCT>ACT	p.S14T	DHDPSL_uc001knx.2_Intron|DHDPSL_uc001kny.2_Intron|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_001009997	NP_001009997	Q5T681	CJ062_HUMAN	hypothetical protein LOC414157	14							protein binding				0		Colorectal(252;0.162)		Epithelial(162;9.58e-11)|all cancers(201;8.62e-09)		AAAGGAAACCTCTGAGTGTCC	0.502000													7	80					0	0	0.029380	0	0
ST5	6764	broad.mit.edu	37	11	8751785	8751785	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr11:8751785G>A	uc001mgt.2	-	3	1238	c.1052C>T	c.(1051-1053)CCC>CTC	p.P351L	ST5_uc009yfr.2_Intron|ST5_uc001mgu.2_Intron|ST5_uc001mgv.2_Missense_Mutation_p.P351L|ST5_uc010rbq.1_Intron|ST5_uc001mgw.1_Missense_Mutation_p.P351L	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	351	Pro-rich.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		CCTCTCTGGGGGTGGGCCCGC	0.687000													19	72					0	0	0.012319	0	0
OR8H3	390152	broad.mit.edu	37	11	55890388	55890388	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr11:55890388C>A	uc001nii.1	+	1	540	c.540C>A	c.(538-540)GAC>GAA	p.D180E		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TTTTCTGTGACACTTCCCCAA	0.423000													17	271					1.45105e-14	1.57032e-14	0.006122	1	0
AHNAK	79026	broad.mit.edu	37	11	62290316	62290316	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr11:62290316C>T	uc001ntl.2	-	5	11873	c.11573G>A	c.(11572-11574)GGT>GAT	p.G3858D	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3858					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GAATTTGGGACCTTTCAACTT	0.478000													32	318					0	0	0.012213	0	0
TUT1	64852	broad.mit.edu	37	11	62346405	62346405	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr11:62346405T>C	uc001nto.2	-	5	940	c.902A>G	c.(901-903)GAT>GGT	p.D301G	TUT1_uc001ntp.1_5'Flank	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	263	Pro-rich.				mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						AGGTTGTGAATCTGGAGGGGA	0.627000													17	45					0	0	0.006122	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120336044	120336044	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr11:120336044G>T	uc001pxl.1	+	28	2719	c.2712G>T	c.(2710-2712)AAG>AAT	p.K904N	ARHGEF12_uc009zat.2_Missense_Mutation_p.K885N|ARHGEF12_uc010rzn.1_Missense_Mutation_p.K801N|ARHGEF12_uc009zau.1_Missense_Mutation_p.K801N	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	904	DH.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		GTCAGAAAAAGGATTCTCGAT	0.393000			T	MLL	AML								26	59					3.6726e-16	4.02966e-16	0.021523	1	0
MLL2	8085	broad.mit.edu	37	12	49431830	49431830	+	Silent	SNP	A	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr12:49431830A>T	uc001rta.3	-	34	9309	c.9309T>A	c.(9307-9309)GCT>GCA	p.A3103A		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3103					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						AGGCATCAGCAGCAGGGGGAG	0.642000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			3	5					0	0	0.004672	0	0
MON2	23041	broad.mit.edu	37	12	62972277	62972277	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr12:62972277G>A	uc001sre.2	+	31	4958	c.4567G>A	c.(4567-4569)GAT>AAT	p.D1523N	MON2_uc009zqj.2_Missense_Mutation_p.D1523N|MON2_uc010ssl.1_Missense_Mutation_p.D1451N|MON2_uc010ssm.1_Missense_Mutation_p.D1494N|MON2_uc010ssn.1_Missense_Mutation_p.D1517N|MON2_uc001srf.2_Missense_Mutation_p.D1286N|MON2_uc001srg.2_Missense_Mutation_p.D392N	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1524					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		TGAAAATATTGATGTCGAGGT	0.284000													7	29					0	0	0.003080	0	0
NAP1L1	4673	broad.mit.edu	37	12	76444427	76444427	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr12:76444427C>T	uc001sxw.2	-	12	1355	c.943G>A	c.(943-945)GAT>AAT	p.D315N	NAP1L1_uc001sxv.2_Missense_Mutation_p.D273N|NAP1L1_uc001sxz.2_Missense_Mutation_p.D246N|NAP1L1_uc001sxx.2_Missense_Mutation_p.D315N|NAP1L1_uc001sxy.2_Missense_Mutation_p.D252N|NAP1L1_uc010sty.1_Missense_Mutation_p.D272N|NAP1L1_uc010stz.1_Missense_Mutation_p.D132N|NAP1L1_uc010sua.1_Missense_Mutation_p.D315N|NAP1L1_uc001syb.2_Missense_Mutation_p.D315N|NAP1L1_uc001sya.2_Missense_Mutation_p.D273N|NAP1L1_uc001syc.2_Missense_Mutation_p.D326N	NM_139207	NP_631946	P55209	NP1L1_HUMAN	nucleosome assembly protein 1-like 1	315					DNA replication|nucleosome assembly|positive regulation of cell proliferation	chromatin assembly complex|melanosome	protein binding			ovary(1)|skin(1)	2		Colorectal(145;0.09)				GCTTCAGCATCATCATCCTAT	0.318000													22	46					0	0	0.012319	0	0
HMGB1	3146	broad.mit.edu	37	13	31036826	31036826	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr13:31036826G>A	uc001usw.2	-	4	504	c.320C>T	c.(319-321)TCT>TTT	p.S107F	HMGB1_uc001usz.2_Missense_Mutation_p.S107F|HMGB1_uc001usv.2_Missense_Mutation_p.S107F|HMGB1_uc001usx.2_Missense_Mutation_p.S107F|HMGB1_uc001usy.2_Missense_Mutation_p.S68F|HMGB1_uc001uta.1_Missense_Mutation_p.S107F	NM_002128	NP_002119	P09429	HMGB1_HUMAN	high-mobility group box 1	107	HMG box 2.				base-excision repair, DNA ligation|dendritic cell chemotaxis|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|inflammatory response to antigenic stimulus|innate immune response|myeloid dendritic cell activation|negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|neuron projection development|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	cell surface|condensed chromosome|extracellular space|nucleolus|nucleoplasm	chemoattractant activity|cytokine activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|repressing transcription factor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(1)	1		Lung SC(185;0.0257)		all cancers(112;0.072)|OV - Ovarian serous cystadenocarcinoma(117;0.177)|Lung(94;0.216)|GBM - Glioblastoma multiforme(144;0.232)		GCGATACTCAGAGCAGAAGAG	0.393000													19	49					0	0	0.012319	0	0
ELF1	1997	broad.mit.edu	37	13	41515309	41515309	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr13:41515309G>A	uc001uxs.2	-	8	1377	c.1004C>T	c.(1003-1005)CCA>CTA	p.P335L	ELF1_uc010tfc.1_Missense_Mutation_p.P311L|ELF1_uc010acd.2_Missense_Mutation_p.P228L	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	335					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		TTTTACCCCTGGACTTGAAGA	0.453000													39	125					0	0	0.030466	0	0
GPHN	10243	broad.mit.edu	37	14	67389425	67389425	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr14:67389425G>C	uc001xiy.2	+	7	1620	c.499G>C	c.(499-501)GAC>CAC	p.D167H	GPHN_uc001xiw.2_Missense_Mutation_p.D149H|GPHN_uc001xix.2_Missense_Mutation_p.D167H|GPHN_uc010tss.1_Missense_Mutation_p.D180H|GPHN_uc010tst.1_Missense_Mutation_p.D136H|GPHN_uc010tsu.1_Missense_Mutation_p.D57H	NM_001024218	NP_001019389	Q9NQX3	GEPH_HUMAN	gephyrin isoform 2	167	Interaction with GABARAP (By similarity).				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cell junction|cytoplasm|cytoskeleton|postsynaptic membrane	ATP binding|metal ion binding|nucleotidyltransferase activity			ovary(2)	2		all_cancers(7;0.0476)|all_hematologic(31;0.0116)		Epithelial(1;1.73e-08)|all cancers(60;3.15e-07)|OV - Ovarian serous cystadenocarcinoma(108;0.000275)|BRCA - Breast invasive adenocarcinoma(234;0.00323)|Colorectal(3;0.0938)|KIRC - Kidney renal clear cell carcinoma(182;0.184)		TCATGCCATTGACCTTTTACG	0.403000			T	MLL	AL								51	127					0	0	0.014410	0	0
ATG2B	55102	broad.mit.edu	37	14	96761860	96761860	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr14:96761860A>T	uc001yfi.2	-	35	5542	c.5177T>A	c.(5176-5178)CTT>CAT	p.L1726H		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1726										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TTCTGCAGAAAGACTTGTGAA	0.308000													29	58					0	0	0.013726	0	0
ITGAX	3687	broad.mit.edu	37	16	31371300	31371300	+	Silent	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr16:31371300G>A	uc002ebu.1	+	7	688	c.621G>A	c.(619-621)AGG>AGA	p.R207R	ITGAX_uc002ebt.2_Silent_p.R207R|ITGAX_uc010vfk.1_5'Flank	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	207	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGAATTCAGGCGCAGCTCAA	0.522000													94	98					0	0	0.014410	0	0
TK2	7084	broad.mit.edu	37	16	66547680	66547680	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr16:66547680T>A	uc002eos.2	-	9	1004	c.779A>T	c.(778-780)GAG>GTG	p.E260V	TK2_uc010vip.1_Missense_Mutation_p.E121V|TK2_uc002eor.2_Missense_Mutation_p.E187V|TK2_uc010cdq.2_Missense_Mutation_p.S131C|TK2_uc010cdr.2_Missense_Mutation_p.E169V|TK2_uc010viq.1_Missense_Mutation_p.E242V|TK2_uc010vir.1_Missense_Mutation_p.E235V	NM_004614	NP_004605	O00142	KITM_HUMAN	thymidine kinase 2, mitochondrial	218					pyrimidine base metabolic process|pyrimidine nucleoside salvage	mitochondrial matrix	ATP binding|phosphotransferase activity, alcohol group as acceptor|thymidine kinase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0736)|Epithelial(162;0.237)		GATGAGCCACTCCTCATGGAG	0.537000													4	62					0	0	0.029380	0	0
SLC13A5	284111	broad.mit.edu	37	17	6606332	6606332	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr17:6606332T>G	uc002gdj.2	-	5	761	c.673A>C	c.(673-675)ACC>CCC	p.T225P	SLC13A5_uc010vtf.1_Missense_Mutation_p.T225P|SLC13A5_uc010clq.2_Missense_Mutation_p.T182P|SLC13A5_uc002gdk.2_Missense_Mutation_p.T208P|SLC13A5_uc002gdl.1_Missense_Mutation_p.T207P	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	225	Helical; (Potential).					integral to membrane	citrate transmembrane transporter activity				0						CCCGTCCCGGTCAGGGTGGCG	0.642000													34	79					0	0	0.015359	0	0
KIAA0100	9703	broad.mit.edu	37	17	26948415	26948415	+	Splice_Site	SNP	A	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr17:26948415A>G	uc002hbu.2	-	27	5158	c.5059_splice	c.e27+1	p.D1687_splice	KIAA0100_uc002hbt.2_Intron	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor							extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GGGAGGGCTGACCTGTGGTTG	0.542000													51	173					0	0	0.014410	0	0
C17orf28	283987	broad.mit.edu	37	17	72954436	72954436	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr17:72954436C>G	uc002jmj.3	-	11	1527	c.1378G>C	c.(1378-1380)GAC>CAC	p.D460H	C17orf28_uc010wrs.1_Missense_Mutation_p.D259H	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	460						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					ATGAGCAGGTCGGCGTGGGTC	0.667000											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	30					0	0	0.014758	0	0
ITGB4	3691	broad.mit.edu	37	17	73752809	73752809	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr17:73752809C>T	uc002jpg.2	+	37	5109	c.4922C>T	c.(4921-4923)CCC>CTC	p.P1641L	ITGB4_uc002jph.2_Missense_Mutation_p.P1571L|ITGB4_uc002jpi.3_Missense_Mutation_p.P1571L|ITGB4_uc002jpj.2_Missense_Mutation_p.P1624L|GALK1_uc010wsi.1_Intron	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1641	Fibronectin type-III 4.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TTGAGCACTCCCAGTGCCCCA	0.667000													22	80					0	0	0.024334	0	0
GADD45B	4616	broad.mit.edu	37	19	2477582	2477582	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:2477582T>A	uc002lwb.1	+	4	688	c.466T>A	c.(466-468)TCT>ACT	p.S156T		NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	156					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCTACATCTCTCTTCAGGA	0.552000													10	22					0	0	0.008291	0	0
S1PR4	8698	broad.mit.edu	37	19	3179456	3179456	+	Silent	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:3179456C>T	uc002lxg.2	+	1	691	c.666C>T	c.(664-666)CTC>CTT	p.L222L		NM_003775	NP_003766	O95977	S1PR4_HUMAN	sphingosine-1-phosphate receptor 4 precursor	222	Helical; Name=5; (By similarity).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|skin(1)	2						TCATGGGCCTCTATGGGGCCA	0.672000													70	151					0	0	0.014410	0	0
ZFP14	57677	broad.mit.edu	37	19	36831480	36831481	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:36831480_36831481GC>AT	uc002odx.1	-	4	1340_1341	c.1247_1248GC>AT	c.(1246-1248)AGC>AAT	p.S416N	ZFP14_uc010xtd.1_Missense_Mutation_p.S417N|ZFP14_uc010eex.1_Missense_Mutation_p.S416N	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	416	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					CAATATGAATGCTCTGGTGTGA	0.416000													47	93					0	0	0.004672	0	0
FCGBP	8857	broad.mit.edu	37	19	40395905	40395906	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:40395905_40395906TC>GT	uc002omp.3	-	15	7499_7500	c.7491_7492GA>AC	c.(7489-7494)GAGAAC>GAACAC	p.N2498H		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2498	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGGCCACGTTCTCCTGCAGGA	0.629000													40	257					0	0	0.004672	0	0
BCAM	4059	broad.mit.edu	37	19	45322968	45322968	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:45322968G>T	uc002ozu.2	+	13	1792	c.1748G>T	c.(1747-1749)CGG>CTG	p.R583L	BCAM_uc002ozt.1_Missense_Mutation_p.R583L	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	583	Cytoplasmic (Potential).				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				CGCCAGCGGCGGGAGAAGGGG	0.502000													9	13					0.000219431	0.000231134	0.020292	1	0
CCDC114	93233	broad.mit.edu	37	19	48800292	48800292	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:48800292T>G	uc002pir.2	-	14	2637	c.1954A>C	c.(1954-1956)ACC>CCC	p.T652P	CCDC114_uc002piq.2_Missense_Mutation_p.T461P|CCDC114_uc002pio.2_3'UTR	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	652	Ser-rich.									ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		GCAGGGCCGGTGCTGGAGACG	0.682000													4	68					0	0	0.009096	0	0
FAM161A	84140	broad.mit.edu	37	2	62066806	62066806	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr2:62066806G>A	uc010ypo.1	-	3	1435	c.1333C>T	c.(1333-1335)CAC>TAC	p.H445Y	FAM161A_uc002sbm.3_Missense_Mutation_p.H445Y|FAM161A_uc002sbn.3_Missense_Mutation_p.H255Y|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Missense_Mutation_p.H336Y	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	445					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						GGAGACTTGTGTTCTGAGAGG	0.408000													47	99					0	0	0.014410	0	0
LMAN2L	81562	broad.mit.edu	37	2	97373520	97373520	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr2:97373520T>C	uc002swu.2	-	7	871	c.835A>G	c.(835-837)ACC>GCC	p.T279A	LMAN2L_uc002swv.2_Missense_Mutation_p.T290A|LMAN2L_uc010yut.1_Missense_Mutation_p.T145A|LMAN2L_uc010yuu.1_Missense_Mutation_p.T143A|LMAN2L_uc010yuv.1_Missense_Mutation_p.T132A|LMAN2L_uc010yuw.1_Missense_Mutation_p.T134A|LMAN2L_uc002sww.2_Missense_Mutation_p.T132A|LMAN2L_uc010yux.1_Missense_Mutation_p.T134A	NM_030805	NP_110432	Q9H0V9	LMA2L_HUMAN	lectin, mannose-binding 2-like isoform 2	279	Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein folding|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle|Golgi membrane|integral to membrane	mannose binding|metal ion binding				0						TCTTCTGGGGTTCTCTCCACT	0.468000													33	103					0	0	0.010818	0	0
LRP2	4036	broad.mit.edu	37	2	170072853	170072853	+	Silent	SNP	A	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr2:170072853A>G	uc002ues.2	-	35	5949	c.5736T>C	c.(5734-5736)ACT>ACC	p.T1912T		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1912	LDL-receptor class B 17.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAGTAAAGAGAGTTTTCACAG	0.502000													34	53					0	0	0.015359	0	0
PTPRA	5786	broad.mit.edu	37	20	3016279	3016279	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr20:3016279G>T	uc010zqd.1	+	20	2319	c.2002G>T	c.(2002-2004)GAT>TAT	p.D668Y	PTPRA_uc002whj.2_Missense_Mutation_p.D657Y|PTPRA_uc002whk.2_Missense_Mutation_p.D648Y|PTPRA_uc002whl.2_Missense_Mutation_p.D648Y|PTPRA_uc002whm.2_Missense_Mutation_p.D424Y|PTPRA_uc002whn.2_Missense_Mutation_p.D648Y|PTPRA_uc002who.2_Missense_Mutation_p.D320Y	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	657	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GTCCTATGGAGATATTACAGT	0.532000													12	14					3.07112e-06	3.27863e-06	0.010729	1	0
FRG1B	284802	broad.mit.edu	37	20	29625905	29625905	+	Missense_Mutation	SNP	T	C	C	rs137871677	by1000genomes	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr20:29625905T>C	uc010ztl.1	+	2	91	c.59T>C	c.(58-60)CTT>CCT	p.L20P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGAAAATATCTTGGTATAAAT	0.333000													4	105					0	0	0.021553	0	0
PARD6B	84612	broad.mit.edu	37	20	49366607	49366607	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr20:49366607T>C	uc002xvo.2	+	3	944	c.701T>C	c.(700-702)ATG>ACG	p.M234T		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	234	PDZ.|Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						GTAACAGACATGATGATTGCA	0.433000													45	94					0	0	0.013114	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067216	46067216	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr21:46067216G>A	uc002zfr.3	+	1	886	c.841G>A	c.(841-843)GCA>ACA	p.A281T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	281						keratin filament				ovary(1)	1						CTGCCGCCCCGCAAGCTCCCG	0.657000													4	58					0	0	0.009096	0	0
EMID1	129080	broad.mit.edu	37	22	29627008	29627008	+	Splice_Site	SNP	G	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr22:29627008G>T	uc003aen.2	+	6	535	c.460_splice	c.e6-1	p.M154_splice	EMID1_uc003aem.2_Splice_Site_p.M156_splice|EMID1_uc003aeo.2_Splice_Site_p.M156_splice|EMID1_uc003aep.2_Splice_Site_p.M156_splice	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1							collagen					0						TTCCTCTTCAGATGACCATGC	0.498000													22	62					1.36565e-18	1.51952e-18	0.016522	1	0
SBF1	6305	broad.mit.edu	37	22	50885659	50885659	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr22:50885659G>C	uc003blh.2	-	41	5789	c.5594C>G	c.(5593-5595)ACG>AGG	p.T1865R	SBF1_uc003ble.2_Missense_Mutation_p.T329R|SBF1_uc003blf.2_Missense_Mutation_p.T341R|SBF1_uc011arx.1_Missense_Mutation_p.T1503R	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1839	PH.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		AACGCGACGCGTTGTCTTCAC	0.667000													9	39					0	0	0.008291	0	0
GOLGA4	2803	broad.mit.edu	37	3	37340849	37340849	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr3:37340849T>C	uc003cgv.2	+	9	1377	c.1073T>C	c.(1072-1074)CTT>CCT	p.L358P	GOLGA4_uc010hgr.1_Intron|GOLGA4_uc003cgw.2_Missense_Mutation_p.L380P|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.L239P	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	358	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ATTGAACAGCTTGAACAAGAT	0.333000													35	29					0	0	0.019004	0	0
MORC1	27136	broad.mit.edu	37	3	108788509	108788509	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr3:108788509T>A	uc003dxl.2	-	9	872	c.785A>T	c.(784-786)AAA>ATA	p.K262I	MORC1_uc011bhn.1_Missense_Mutation_p.K262I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	262					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GCAAAGATGTTTAGTTTTAAC	0.373000													36	96					0	0	0.021022	0	0
DAPP1	27071	broad.mit.edu	37	4	100787280	100787280	+	Splice_Site	SNP	T	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr4:100787280T>G	uc003hvf.3	+	8	864	c.774_splice	c.e8+2	p.L258_splice	DAPP1_uc010ilh.2_Splice_Site_p.L258_splice	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and						signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		TGGAAATTGGTGAGAATTTTT	0.358000													6	21					0	0	0.003080	0	0
F2RL2	2151	broad.mit.edu	37	5	75913735	75913735	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr5:75913735A>G	uc003kem.2	-	2	982	c.797T>C	c.(796-798)TTG>TCG	p.L266S	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Missense_Mutation_p.L244S	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	266	Helical; Name=5; (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		AAAGAATGCCAAGGAGATGAA	0.423000													10	42					0	0	0.008291	0	0
BHMT	635	broad.mit.edu	37	5	78415082	78415082	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr5:78415082T>C	uc003kfu.3	+	3	272	c.167T>C	c.(166-168)GTT>GCT	p.V56A	BHMT_uc011cti.1_Intron	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	56	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	ACTCTCCCAGTTCGCCAGCTT	0.433000													30	71					0	0	0.017118	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481178	140481178	+	Silent	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr5:140481178T>C	uc003lio.2	+	1	945	c.945T>C	c.(943-945)TAT>TAC	p.Y315Y	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	315	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAATAGTTATGAAGTCGACA	0.428000													30	47					0	0	0.037714	0	0
ODZ2	57451	broad.mit.edu	37	5	167674296	167674296	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr5:167674296C>A	uc010jjd.2	+	27	6325	c.6325C>A	c.(6325-6327)CGC>AGC	p.R2109S	ODZ2_uc003lzr.3_Missense_Mutation_p.R1879S|ODZ2_uc003lzt.3_Missense_Mutation_p.R1482S|ODZ2_uc010jje.2_Missense_Mutation_p.R1373S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGACCTCTACCGCTATGATGA	0.493000													46	104					8.00217e-19	9.03102e-19	0.014410	1	0
PFN3	345456	broad.mit.edu	37	5	176827191	176827191	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr5:176827191T>C	uc003mgl.2	-	1	447	c.387A>G	c.(385-387)ATA>ATG	p.I129M		NM_001029886	NP_001025057	P60673	PROF3_HUMAN	profilin 3	129					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCAGCCCGCGTATGAGTTCGT	0.706000													10	29					0	0	0.013537	0	0
VARS2	57176	broad.mit.edu	37	6	30893383	30893383	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:30893383G>C	uc003nsc.1	+	27	3480	c.2848G>C	c.(2848-2850)GGC>CGC	p.G950R	VARS2_uc011dmx.1_Missense_Mutation_p.G950R|VARS2_uc011dmy.1_Missense_Mutation_p.G810R|VARS2_uc011dmz.1_Missense_Mutation_p.G980R|VARS2_uc011dna.1_Missense_Mutation_p.G948R|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.G388R|VARS2_uc010jsg.1_Missense_Mutation_p.G322R|VARS2_uc010jsh.1_Missense_Mutation_p.G94R	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	950					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						GGAGCCCCTGGGCACCCTGGG	0.647000													8	28					0	0	0.003080	0	0
TTBK1	84630	broad.mit.edu	37	6	43226956	43226956	+	Silent	SNP	C	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:43226956C>G	uc003ouq.1	+	11	1476	c.1197C>G	c.(1195-1197)GTC>GTG	p.V399V		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	399						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AGGCTGAAGTCTGGGAGGAGA	0.642000													19	58					0	0	0.010504	0	0
GPR110	266977	broad.mit.edu	37	6	46977043	46977043	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:46977043G>A	uc003oyt.2	-	11	2327	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	GPR110_uc011dwl.1_Missense_Mutation_p.P398S	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	710	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						ATAATGAGAGGGCACCCATAA	0.478000													14	36					0	0	0.016723	0	0
C6orf170	221322	broad.mit.edu	37	6	121576521	121576521	+	Silent	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:121576521T>A	uc003pyo.1	-	17	2039	c.1971A>T	c.(1969-1971)GTA>GTT	p.V657V	C6orf170_uc003pyq.1_RNA|C6orf170_uc003pyp.1_Silent_p.V176V	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	657					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		CAGAACCCTCTACTGGAGTAG	0.289000													34	56					0	0	0.025465	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091819	143091819	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:143091819T>C	uc003qjd.2	-	5	4800	c.4057A>G	c.(4057-4059)ATT>GTT	p.I1353V		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1353					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		ATCTGAGAAATGCTTGTGTAC	0.507000													26	59					0	0	0.024334	0	0
MUC17	140453	broad.mit.edu	37	7	100681141	100681141	+	Silent	SNP	T	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr7:100681141T>A	uc003uxp.1	+	3	6497	c.6444T>A	c.(6442-6444)GGT>GGA	p.G2148G	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2148	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTACTGAAGGTACCAGCATGC	0.473000													9	350					0	0	0.004482	0	0
CADPS2	93664	broad.mit.edu	37	7	122269335	122269335	+	Silent	SNP	A	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr7:122269335A>G	uc010lkp.2	-	4	997	c.834T>C	c.(832-834)GAT>GAC	p.D278D	CADPS2_uc010lkq.2_Silent_p.D278D	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	278					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GCAGCCGGCCATCAAGTTCCC	0.358000													6	20					0	0	0.021553	0	0
NUP205	23165	broad.mit.edu	37	7	135276257	135276257	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr7:135276257T>G	uc003vsw.2	+	11	1564	c.1533T>G	c.(1531-1533)ATT>ATG	p.I511M		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	511					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						CTATTTATATTCCTTATTTGA	0.403000													40	71					0	0	0.030466	0	0
FANCG	2189	broad.mit.edu	37	9	35077002	35077002	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:35077002A>G	uc003zwb.1	-	6	1235	c.743T>C	c.(742-744)GTG>GCG	p.V248A	FANCG_uc003zwa.1_5'UTR|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Missense_Mutation_p.V248A	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	248	TPR 1.				cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TGCTGTGTACACCTGGACCAA	0.527000			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				22	66					0	0	0.016522	0	0
SMC2	10592	broad.mit.edu	37	9	106862707	106862707	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:106862707T>C	uc004bbv.2	+	7	917	c.629T>C	c.(628-630)TTA>TCA	p.L210S	SMC2_uc004bbu.1_Missense_Mutation_p.L210S|SMC2_uc004bbw.2_Missense_Mutation_p.L210S|SMC2_uc011lvl.1_Missense_Mutation_p.L210S|SMC2_uc010mtg.1_Missense_Mutation_p.L65S|SMC2_uc010mth.1_Missense_Mutation_p.L160S|SMC2_uc004bbx.2_Missense_Mutation_p.L210S	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	210	Potential.				cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						ATTCAAAAATTAAAAGAGGTA	0.274000													32	70					0	0	0.012213	0	0
PTGR1	22949	broad.mit.edu	37	9	114359672	114359672	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:114359672T>G	uc004bfh.2	-	2	134	c.31A>C	c.(31-33)AAG>CAG	p.K11Q	PTGR1_uc011lwr.1_Missense_Mutation_p.K11Q|PTGR1_uc004bfi.3_Missense_Mutation_p.K11Q|PTGR1_uc004bfj.3_5'UTR|PTGR1_uc010mue.2_Missense_Mutation_p.K11Q	NM_012212	NP_036344	Q14914	PTGR1_HUMAN	prostaglandin reductase 1 isoform 1	11					leukotriene metabolic process	cytoplasm	15-oxoprostaglandin 13-oxidase activity|2-alkenal reductase activity|alcohol dehydrogenase (NAD) activity|zinc ion binding				0						ACAAAGTGCTTCTTCAGGGTC	0.403000													12	17					0	0	0.020292	0	0
GAPVD1	26130	broad.mit.edu	37	9	128064468	128064468	+	Missense_Mutation	SNP	C	T	T	rs139510593		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:128064468C>T	uc010mwx.2	+	5	718	c.392C>T	c.(391-393)ACA>ATA	p.T131I	GAPVD1_uc004bpo.2_Missense_Mutation_p.T131I|GAPVD1_uc011lzs.1_Missense_Mutation_p.T131I|GAPVD1_uc004bpp.2_Missense_Mutation_p.T131I|GAPVD1_uc004bpq.2_Missense_Mutation_p.T131I|GAPVD1_uc004bpr.2_Missense_Mutation_p.T131I|GAPVD1_uc004bps.2_Missense_Mutation_p.T131I|GAPVD1_uc010mwy.1_5'UTR	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	131	Ras-GAP.				endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTTATTTACACAGTTTTTACC	0.388000													74	155					0	0	0.014410	0	0
DNM1	1759	broad.mit.edu	37	9	131010868	131010868	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:131010868G>A	uc011mau.1	+	19	1999	c.1912G>A	c.(1912-1914)GAG>AAG	p.E638K	DNM1_uc011mat.1_Missense_Mutation_p.E638K|DNM1_uc004bub.1_Missense_Mutation_p.E11K|DNM1_uc004buc.1_Missense_Mutation_p.E105K|DNM1_uc004bud.3_RNA	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	638					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GCAGGCCAGCGAGACCGAGGA	0.597000													22	50					0	0	0.018920	0	0
CERCAM	51148	broad.mit.edu	37	9	131196837	131196837	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr9:131196837C>T	uc004buz.3	+	11	1878	c.1480C>T	c.(1480-1482)CGC>TGC	p.R494C	CERCAM_uc004buy.1_Missense_Mutation_p.R416C|CERCAM_uc010mxz.2_Missense_Mutation_p.R416C|CERCAM_uc010mya.1_Missense_Mutation_p.R335C	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	494					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						ACAGCCTCTGCGCCGCATGCT	0.697000													3	59					0	0	0.004672	0	0
EIF2S3	1968	broad.mit.edu	37	X	24089815	24089815	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chrX:24089815C>T	uc004dbc.2	+	10	1174	c.1153C>T	c.(1153-1155)CGC>TGC	p.R385C		NM_001415	NP_001406	P41091	IF2G_HUMAN	eukaryotic translation initiation factor 2,	385						cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			lung(1)	1						TCTAGGTGTACGCACTGAAGG	0.403000													27	12					0	0	0.027356	0	0
KDM6A	7403	broad.mit.edu	37	X	44949021	44949021	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chrX:44949021G>A	uc004dge.3	+	25	3957	c.3582G>A	c.(3580-3582)TGG>TGA	p.W1194*	KDM6A_uc011mkz.1_Nonsense_Mutation_p.W1246*|KDM6A_uc011mla.1_Nonsense_Mutation_p.W1149*|KDM6A_uc011mlb.1_Nonsense_Mutation_p.W1201*|KDM6A_uc011mlc.1_Nonsense_Mutation_p.W898*|KDM6A_uc011mld.1_Nonsense_Mutation_p.W833*	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1194	JmjC.				histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						GTTCTTGGTGGCCCAATCTTG	0.368000			D|N|F|S		renal|oesophageal SCC|MM								23	8					0	0	0.021523	0	0
NPS	594857	broad.mit.edu	37	10	129350829	129350829	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr10:129350829delT	uc001ljx.1	+	3	216	c.196delT	c.(196-198)TTTfs	p.F66fs		NM_001030013	NP_001025184	P0C0P6	NPS_HUMAN	neuropeptide S precursor	66					neuropeptide signaling pathway	extracellular region					0						GGAGAAGATGTTTGTGAAAAG	0.413													51	308	---	---	---	---					
HMGB1	3146	broad.mit.edu	37	13	31036836	31036836	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr13:31036836delG	uc001usw.2	-	4	494	c.310delC	c.(310-312)CTCfs	p.L104fs	HMGB1_uc001usz.2_Frame_Shift_Del_p.L104fs|HMGB1_uc001usv.2_Frame_Shift_Del_p.L104fs|HMGB1_uc001usx.2_Frame_Shift_Del_p.L104fs|HMGB1_uc001usy.2_Frame_Shift_Del_p.L65fs|HMGB1_uc001uta.1_Frame_Shift_Del_p.L104fs	NM_002128	NP_002119	P09429	HMGB1_HUMAN	high-mobility group box 1	104	HMG box 2.				base-excision repair, DNA ligation|dendritic cell chemotaxis|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|inflammatory response to antigenic stimulus|innate immune response|myeloid dendritic cell activation|negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|neuron projection development|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	cell surface|condensed chromosome|extracellular space|nucleolus|nucleoplasm	chemoattractant activity|cytokine activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|repressing transcription factor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(1)	1		Lung SC(185;0.0257)		all cancers(112;0.072)|OV - Ovarian serous cystadenocarcinoma(117;0.177)|Lung(94;0.216)|GBM - Glioblastoma multiforme(144;0.232)		GAGCAGAAGAGGAAGAAGGCC	0.378													17	55	---	---	---	---					
SAMD14	201191	broad.mit.edu	37	17	48192925	48192926	+	Splice_Site	INS	-	A	A			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr17:48192925_48192926insA	uc002iqg.2	-	7	1121	c.822_splice	c.e7+1	p.Q274_splice	SAMD14_uc002iqd.2_Splice_Site_p.Q57_splice|SAMD14_uc002iqe.2_Splice_Site_p.Q57_splice|SAMD14_uc002iqf.2_Splice_Site_p.Q274_splice	NM_174920	NP_777580	Q8IZD0	SAM14_HUMAN	sterile alpha motif domain containing 14												0						GGCATGGACTTACCTGGGAAGC	0.584													76	86	---	---	---	---					
ZNF543	125919	broad.mit.edu	37	19	57839185	57839185	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr19:57839185delG	uc002qoi.1	+	4	700	c.355delG	c.(355-357)GGGfs	p.G119fs		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTCCCAATTAGGGCAATCCAA	0.512													15	55	---	---	---	---					
HCG4	54435	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	-	-	rs146714150		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	uc003nns.2	-	1		c.478_498delTGCTCCATCCACGGCGCCCGC			uc010jrm.1_In_Frame_Del_p.AGAVDGA111del|uc003nnt.2_In_Frame_Del_p.RAPWMEQ147del|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													3	3	---	---	---	---					
RGS20	8601	broad.mit.edu	37	8	54764571	54764572	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chr8:54764571_54764572delAT	uc003xrp.2	+	1	204_205	c.112_113delAT	c.(112-114)ATTfs	p.I38fs	RGS20_uc003xrq.2_Frame_Shift_Del_p.I38fs|RGS20_uc010lye.2_5'UTR|RGS20_uc010lyf.2_5'UTR	NM_170587	NP_733466	O76081	RGS20_HUMAN	regulator of G-protein signaling 20 isoform a	38					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|nucleus|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(7;1.37e-06)|Epithelial(17;0.000126)|all cancers(17;0.0009)			TAATACAGACATTCACCAAATC	0.455													38	83	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11866	11867	+	RNA	INS	-	C	C			TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	g.chrM:11866_11867insC	uc004cov.3	+	1		c.1289_1290insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AACCTCGCCTTACCCCCCACTA	0.455													26	8	---	---	---	---					
