Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLXNA2	5362	broad.mit.edu	37	1	208270156	208270156	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr1:208270156C>A	uc001hgz.2	-	7	2562	c.1804G>T	c.(1804-1806)GTG>TTG	p.V602L		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	602	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TGCCCCTCCACCTCTGTCAGG	0.562000													12	36					0.00074312	0.000844455	0.038395	1	0
STAM	8027	broad.mit.edu	37	10	17747670	17747670	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr10:17747670T>A	uc001ipj.1	+	12	1355	c.1139T>A	c.(1138-1140)ATG>AAG	p.M380K	STAM_uc009xjw.1_Missense_Mutation_p.M38K	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	380	ITAM.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						GAAGATCCGATGTATTCCATG	0.368000													42	105					0	0	0.104719	0	0
C10orf2	56652	broad.mit.edu	37	10	102750271	102750271	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr10:102750271G>T	uc001ksf.2	+	3	2238	c.1563G>T	c.(1561-1563)ATG>ATT	p.M521I	MRPL43_uc001kry.1_5'Flank|MRPL43_uc010qpu.1_5'Flank|MRPL43_uc001ksa.1_5'Flank|MRPL43_uc001ksb.1_5'Flank|MRPL43_uc001ksd.1_5'Flank|MRPL43_uc001ksc.2_5'Flank|MRPL43_uc001kse.2_5'Flank|C10orf2_uc001ksg.2_Missense_Mutation_p.M521I|C10orf2_uc001ksi.2_Missense_Mutation_p.M67I|C10orf2_uc010qpv.1_Missense_Mutation_p.M67I|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	521	SF4 helicase.				cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TGCAGTTCATGATGGGTCACG	0.493000													63	137					2.81305e-35	3.70138e-35	0.048971	1	0
OR52N5	390075	broad.mit.edu	37	11	5799428	5799428	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr11:5799428G>T	uc010qzn.1	-	1	437	c.437C>A	c.(436-438)ACC>AAC	p.T146N	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	146	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		GATAGGGTTGGTGAGTGTGGT	0.507000													7	16					7.48243e-07	8.7005e-07	0.058154	1	0
ACCSL	390110	broad.mit.edu	37	11	44073203	44073203	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr11:44073203G>T	uc001mxw.1	+	5	762	c.706G>T	c.(706-708)GTG>TTG	p.V236L	ACCSL_uc009ykr.2_Missense_Mutation_p.V55L	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	236							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						TTGTCTTCAGGTGGTGGTTCT	0.532000													44	287					5.2432e-18	6.554e-18	0.048971	1	0
BUD13	84811	broad.mit.edu	37	11	116633298	116633298	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr11:116633298A>G	uc001ppn.2	-	4	1041	c.1007T>C	c.(1006-1008)TTT>TCT	p.F336S	BUD13_uc001ppo.2_Intron|BUD13_uc009yzc.2_Missense_Mutation_p.F336S	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	336										large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		CTTGTCTCCAAAATGGGATTT	0.443000													59	118					0	0	0.048971	0	0
EMG1	10436	broad.mit.edu	37	12	7084424	7084424	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr12:7084424G>A	uc001qsh.3	+	7	648	c.505G>A	c.(505-507)GTT>ATT	p.V169I	EMG1_uc009zfo.2_Intron|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1	169					ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						TCACTTTCCAGTTGGATGTAT	0.443000													8	42					0	0	0.038147	0	0
C12orf51	283450	broad.mit.edu	37	12	112694159	112694159	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr12:112694159C>T	uc009zwc.2	-	14	2014	c.1996G>A	c.(1996-1998)GAT>AAT	p.D666N	C12orf51_uc010syk.1_Missense_Mutation_p.D489N|C12orf51_uc001tts.2_Missense_Mutation_p.D489N|C12orf51_uc001ttt.3_Missense_Mutation_p.D487N	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CATCTGCTATCAAATCTAAGG	0.423000													44	88					0	0	0.048971	0	0
TDRD3	81550	broad.mit.edu	37	13	61102844	61102844	+	Silent	SNP	T	C	C			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr13:61102844T>C	uc001via.2	+	11	1994	c.1206T>C	c.(1204-1206)GCT>GCC	p.A402A	TDRD3_uc010aef.2_Silent_p.A227A|TDRD3_uc001vhz.3_Silent_p.A402A|TDRD3_uc010aeg.2_Silent_p.A495A|TDRD3_uc001vib.3_Silent_p.A401A	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	402					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		GTGATGGTGCTTTTAAAAAAA	0.373000													3	127					0	0	0.009096	0	0
FITM1	161247	broad.mit.edu	37	14	24601751	24601751	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr14:24601751G>C	uc001wmf.2	+	2	696	c.598G>C	c.(598-600)GAA>CAA	p.E200Q		NM_203402	NP_981947	A5D6W6	FITM1_HUMAN	fat-inducing transcript 1	200	Helical; (Potential).				lipid particle organization|positive regulation of sequestering of triglyceride	endoplasmic reticulum membrane|integral to membrane					0						CATGGCAGAGGAAGCAGCTGT	0.652000													33	48					0	0	0.054565	0	0
ITGAL	3683	broad.mit.edu	37	16	30507473	30507473	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr16:30507473G>A	uc002dyi.3	+	14	1735	c.1559G>A	c.(1558-1560)CGG>CAG	p.R520Q	ITGAL_uc002dyj.3_Missense_Mutation_p.R437Q|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	520	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CCACTCGGGCGGTTTGGAGAA	0.597000													27	168					0	0	0.108266	0	0
SLC12A3	6559	broad.mit.edu	37	16	56906659	56906659	+	Silent	SNP	A	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr16:56906659A>G	uc010ccm.2	+	8	1085	c.1056A>G	c.(1054-1056)ACA>ACG	p.T352T	SLC12A3_uc002ekd.3_Silent_p.T352T|SLC12A3_uc010ccn.2_Silent_p.T351T	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	352	Helical; (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CCTCGGCCACAGGCATCCTGG	0.562000													3	76					0	0	0.004672	0	0
GPRC5C	55890	broad.mit.edu	37	17	72428210	72428210	+	Silent	SNP	C	G	G	rs138824950		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr17:72428210C>G	uc002jkp.2	+	1	544	c.33C>G	c.(31-33)CCC>CCG	p.P11P	GPRC5C_uc002jkq.2_Silent_p.P11P|GPRC5C_uc002jkr.2_5'Flank	NM_022036	NP_071319	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	Error:Variant_position_missing_in_Q9NQ84_after_alignment						cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						AGCAACAACCCACACGCCGGC	0.687000													3	25					0	0	0.004672	0	0
WDR45L	56270	broad.mit.edu	37	17	80579499	80579499	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr17:80579499T>C	uc002kfq.2	-	6	799	c.604A>G	c.(604-606)ACT>GCT	p.T202A	WDR45L_uc002kfr.2_RNA	NM_019613	NP_062559	Q5MNZ6	WIPI3_HUMAN	WDR45-like	202	WD 1.				autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1	Breast(20;0.00106)|all_neural(118;0.0952)	all_cancers(8;0.101)|all_epithelial(8;0.198)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.0835)			TCGGATGCAGTTGCAATTCTT	0.542000													9	54					0	0	0.069234	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567000													3	51					0	0	0.009096	0	0
KLK3	354	broad.mit.edu	37	19	51359636	51359636	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr19:51359636G>T	uc002pts.1	+	2	228	c.187G>T	c.(187-189)GCT>TCT	p.A63S	KLK3_uc002ptp.1_Missense_Mutation_p.A63S|KLK3_uc010ycj.1_Missense_Mutation_p.A63S|KLK3_uc002ptr.1_Missense_Mutation_p.A63S|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	63	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		GGTCCTCACAGCTGCCCACTG	0.617000													38	85					4.92203e-23	6.31029e-23	0.086207	1	0
ANKRD23	200539	broad.mit.edu	37	2	97505559	97505559	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr2:97505559C>T	uc002sxa.2	-	8	756	c.727G>A	c.(727-729)GGG>AGG	p.G243R	ANKRD23_uc002sxb.2_RNA|ANKRD23_uc002sxc.2_Missense_Mutation_p.G201R	NM_144994	NP_659431	Q86SG2	ANR23_HUMAN	diabetes related ankyrin repeat protein	243	ANK 4.					nucleus				ovary(1)	1						GCCGTGTCCCCTTCCTGCTGA	0.647000													6	25					0	0	0.029380	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													3	105					0	0	0.004672	0	0
MBD5	55777	broad.mit.edu	37	2	149226038	149226038	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr2:149226038A>G	uc002twm.3	+	9	1514	c.526A>G	c.(526-528)AAT>GAT	p.N176D	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.N176D|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	176						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TGGATCATCAAATGCCATGGG	0.423000													21	71					0	0	0.062417	0	0
CYTIP	9595	broad.mit.edu	37	2	158287080	158287080	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr2:158287080T>C	uc002tzj.1	-	5	539	c.467A>G	c.(466-468)AAC>AGC	p.N156S	CYTIP_uc010zcl.1_Missense_Mutation_p.N50S	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	156	PDZ.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CGTTAGCAGGTTTCCGGACGA	0.428000													14	54					0	0	0.020292	0	0
SCN1A	6323	broad.mit.edu	37	2	166866330	166866330	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr2:166866330C>T	uc010zcz.1	-	20	3886	c.3868G>A	c.(3868-3870)GCA>ACA	p.A1290T	SCN1A_uc002udo.3_Missense_Mutation_p.A1170T|SCN1A_uc010fpk.2_Missense_Mutation_p.A1142T	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1301	Helical; Name=S3 of repeat III; (By similarity).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AAGGCATTTGCTGTTAAACTG	0.368000													3	90					0	0	0.009096	0	0
C21orf91	54149	broad.mit.edu	37	21	19190580	19190580	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr21:19190580C>T	uc002yko.3	-	2	147	c.56G>A	c.(55-57)AGT>AAT	p.S19N	C21orf91_uc002ykq.3_Missense_Mutation_p.S19N|C21orf91_uc002ykp.3_Missense_Mutation_p.S19N	NM_001100420	NP_001093890	Q9NYK6	EURL_HUMAN	early undifferentiated retina and lens isoform	19										ovary(1)	1				Epithelial(23;8.76e-05)|all cancers(11;0.000422)|OV - Ovarian serous cystadenocarcinoma(11;0.0107)|Lung(58;0.0129)|COAD - Colon adenocarcinoma(22;0.0303)|LUSC - Lung squamous cell carcinoma(23;0.0381)|Colorectal(24;0.0929)		TTTACAAACACTGCAAATGTT	0.353000													5	112					0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	22	18844766	18844766	+	RNA	SNP	G	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr22:18844766G>A	uc002zoe.2	+	4		c.2020G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CAGCCTCTGAGGGCAGCAGTG	0.557000													9	17					0	0	0.047766	0	0
FBXW7	55294	broad.mit.edu	37	4	153268165	153268165	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr4:153268165C>T	uc003ims.2	-	4	792	c.643G>A	c.(643-645)GCC>ACC	p.A215T	FBXW7_uc011cii.1_Missense_Mutation_p.A215T|FBXW7_uc003imt.2_Missense_Mutation_p.A215T|FBXW7_uc011cih.1_Missense_Mutation_p.A39T|FBXW7_uc003imq.2_Missense_Mutation_p.A135T|FBXW7_uc003imr.2_Missense_Mutation_p.A97T	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	215					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TGGCCATTGGCTGCTCTGAGG	0.398000			Mis|N|D|F		colorectal|endometrial|T-ALL								3	108					0	0	0.004672	0	0
PDZD2	23037	broad.mit.edu	37	5	32108131	32108131	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr5:32108131A>G	uc003jhl.2	+	25	8798	c.8410A>G	c.(8410-8412)AAT>GAT	p.N2804D	PDZD2_uc003jhm.2_Missense_Mutation_p.N2804D|PDZD2_uc003jhn.2_RNA|PDZD2_uc003jho.2_RNA	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2804	PDZ 6.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TCTTGCTATTAATGGGAAACC	0.403000													43	63					0	0	0.048971	0	0
GMDS	2762	broad.mit.edu	37	6	1930387	1930387	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:1930387C>T	uc003mtq.2	-	7	911	c.721G>A	c.(721-723)GGA>AGA	p.G241R		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	241					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TCCAGATTTCCCAAACTGAAA	0.408000													31	85					0	0	0.041601	0	0
MEP1A	4224	broad.mit.edu	37	6	46801054	46801054	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:46801054A>G	uc010jzh.1	+	11	1430	c.1388A>G	c.(1387-1389)GAG>GGG	p.E463G	MEP1A_uc011dwg.1_Missense_Mutation_p.E185G|MEP1A_uc011dwh.1_Missense_Mutation_p.E491G|MEP1A_uc011dwi.1_Missense_Mutation_p.E363G	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	463	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TACAATTCGGAGGGATATGGT	0.498000													17	98					0	0	0.028581	0	0
OPN5	221391	broad.mit.edu	37	6	47754339	47754339	+	Silent	SNP	C	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:47754339C>A	uc003ozc.2	+	2	224	c.219C>A	c.(217-219)ATC>ATA	p.I73I	OPN5_uc003ozd.2_5'Flank	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	73	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						TAATGACTATCAATTTAGCAG	0.403000													32	68					1.21669e-08	1.48377e-08	0.059317	1	0
KLHL31	401265	broad.mit.edu	37	6	53517013	53517013	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:53517013C>T	uc003pcb.3	-	3	1429	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K	uc003pcc.1_Silent_p.F135F	NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	430	Kelch 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					AGGCTTCCTTCTGCGTTGCGG	0.662000													30	48					0	0	0.034045	0	0
COL19A1	1310	broad.mit.edu	37	6	70639518	70639518	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:70639518G>T	uc003pfc.1	+	6	709	c.592G>T	c.(592-594)GAT>TAT	p.D198Y	COL19A1_uc010kam.1_Missense_Mutation_p.D94Y	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	198	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GAGGCAGACTGATGAAAAGGA	0.423000													15	67					6.31663e-08	7.51979e-08	0.024245	1	0
STX11	8676	broad.mit.edu	37	6	144507993	144507993	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr6:144507993C>T	uc003qks.3	+	2	421	c.229C>T	c.(229-231)CGG>TGG	p.R77W		NM_003764	NP_003755	O75558	STX11_HUMAN	syntaxin 11	77					cellular membrane fusion|intracellular protein transport|vesicle-mediated transport	Golgi apparatus|membrane	SNAP receptor activity			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(155;2.17e-06)|GBM - Glioblastoma multiforme(68;0.0492)		CACGTCCATGCGGCGCCTCAG	0.627000									Familial_Hemophagocytic_Lymphohistiocytosis				3	28					0	0	0.009096	0	0
TXNDC3	51314	broad.mit.edu	37	7	37927910	37927910	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr7:37927910C>T	uc003tfn.2	+	15	1651	c.1279C>T	c.(1279-1281)CCG>TCG	p.P427S		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	427	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GGACAGTTTGCCGGTCAACCA	0.368000									Kartagener_syndrome				4	117					0	0	0.009096	0	0
EPPK1	83481	broad.mit.edu	37	8	144940741	144940741	+	Silent	SNP	C	T	T			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr8:144940741C>T	uc003zaa.1	-	2	14704	c.14691G>A	c.(14689-14691)GCG>GCA	p.A4897A		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4897	Plectin 61.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAGGACGCCCGCGATGCAGC	0.677000													4	111					0	0	0.009096	0	0
KIAA2026	158358	broad.mit.edu	37	9	5922386	5922386	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr9:5922386T>G	uc003zjq.3	-	8	3826	c.3610A>C	c.(3610-3612)AGC>CGC	p.S1204R	KIAA2026_uc010mht.2_Missense_Mutation_p.S379R	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1204										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TCACTCTGGCTAGTCTTAACT	0.453000													29	58					0	0	0.030593	0	0
GTF3C5	9328	broad.mit.edu	37	9	135919313	135919313	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr9:135919313G>A	uc004cci.3	+	3	909	c.572G>A	c.(571-573)CGG>CAG	p.R191Q	GTF3C5_uc010mzz.2_Missense_Mutation_p.R66Q|GTF3C5_uc004ccj.3_Missense_Mutation_p.R191Q	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	191						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		ACCCAGCACCGGTAAGGCCCC	0.542000													3	111					0	0	0.004672	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071420	141071420	+	Missense_Mutation	SNP	G	A	A	rs147421666	by1000genomes	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr9:141071420G>A	uc004com.2	+	4	1084	c.823G>A	c.(823-825)GAC>AAC	p.D275N	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						CTGGTTCCCCGACAACGTAAA	0.512000													4	80					0	0	0.021553	0	0
DUSP12	11266	broad.mit.edu	37	1	161726704	161726704	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr1:161726704delG	uc001gbo.2	+	6	1001	c.990delG	c.(988-990)TTGfs	p.L330fs	DUSP12_uc001gbp.2_Frame_Shift_Del_p.L200fs	NM_007240	NP_009171	Q9UNI6	DUS12_HUMAN	dual specificity phosphatase 12	330					positive regulation of glucokinase activity	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity|zinc ion binding			breast(1)	1	all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00634)			TGAAAATATTGCCTGTTTTGG	0.373													23	45	---	---	---	---					
GGA3	23163	broad.mit.edu	37	17	73235600	73235601	+	In_Frame_Ins	INS	-	GGT	GGT	rs150787028	by1000genomes	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr17:73235600_73235601insGGT	uc002jni.1	-	14	1644_1645	c.1635_1636insACC	c.(1633-1638)insACC	p.545_546insT	GGA3_uc002jnj.1_In_Frame_Ins_p.512_513insT|GGA3_uc010wrw.1_In_Frame_Ins_p.423_424insT|GGA3_uc002jnk.1_In_Frame_Ins_p.473_474insT|GGA3_uc010wrx.1_In_Frame_Ins_p.423_424insT|GGA3_uc010wry.1_In_Frame_Ins_p.473_474insT	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	545_546	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			GGCCTGGCTGGGGTGGTGGTGG	0.673											OREG0024729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	9	---	---	---	---					
NF2	4771	broad.mit.edu	37	22	30000023	30000024	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr22:30000023_30000024delCT	uc003age.3	+	1	479_480	c.36_37delCT	c.(34-39)AGCTCTfs	p.S12fs	NF2_uc003afy.3_Frame_Shift_Del_p.S12fs|NF2_uc003afz.3_Frame_Shift_Del_p.S12fs|NF2_uc003agf.3_Frame_Shift_Del_p.S12fs|NF2_uc003agb.3_5'UTR|NF2_uc003agc.3_5'UTR|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Frame_Shift_Del_p.S12fs|NF2_uc003aga.3_Frame_Shift_Del_p.S12fs|NF2_uc003agh.3_Frame_Shift_Del_p.S12fs|NF2_uc003agi.3_Frame_Shift_Del_p.S12fs|NF2_uc003agj.3_Frame_Shift_Del_p.S12fs	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	12_13					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.L14fs*34(2)|p.?(1)|p.S13fs*10(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						TGAGCTTCAGCTCTCTCAAGAG	0.663			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				6	6	---	---	---	---					
KCNJ4	3761	broad.mit.edu	37	22	38823432	38823433	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chr22:38823432_38823433insGGA	uc003avs.1	-	2	802_803	c.705_706insTCC	c.(703-708)insTCC	p.235_236insS	KCNJ4_uc003avt.1_In_Frame_Ins_p.235_236insS	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	235_236	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					TGGTCCAGGGGCAGGTACTCGC	0.629													13	39	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			4	2	---	---	---	---					
