Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC2A5	6518	broad.mit.edu	37	1	9097752	9097752	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:9097752T>C	uc001apo.2	-	12	1691	c.1399A>G	c.(1399-1401)ACG>GCG	p.T467A	SLC2A5_uc010nzy.1_Missense_Mutation_p.T408A|SLC2A5_uc010nzz.1_Missense_Mutation_p.T352A|SLC2A5_uc010oaa.1_Missense_Mutation_p.T423A|SLC2A5_uc010oab.1_Missense_Mutation_p.T467A	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	467	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TCTATGAACGTCTTGGCCTTG	0.512000													25	125					0	0	9.22233e-05	0	0
ALPL	249	broad.mit.edu	37	1	21902288	21902288	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:21902288G>A	uc001bet.2	+	10	1317	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K	ALPL_uc010odn.1_Missense_Mutation_p.E302K|ALPL_uc010odo.1_Missense_Mutation_p.E299K|ALPL_uc010odp.1_Missense_Mutation_p.E277K|ALPL_uc001beu.3_Missense_Mutation_p.E354K	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	354			E -> D (in HOPS).		response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	TGAGGCGGTGGAGATGGACCG	0.612000													21	133					0	0	0.000175454	0	0
WASF2	10163	broad.mit.edu	37	1	27739179	27739179	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:27739179A>G	uc001bof.1	-	7	927	c.711T>C	c.(709-711)TGT>TGC	p.C237C	WASF2_uc010ofl.1_Silent_p.C237C	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	237					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		CGTTTTCAACACAGCCAATGC	0.488000													15	83					0	0	0.000566183	0	0
MACF1	23499	broad.mit.edu	37	1	39888512	39888512	+	Silent	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:39888512C>T	uc010oiu.1	+	24	11540	c.11409C>T	c.(11407-11409)GCC>GCT	p.A3803A	MACF1_uc010ois.1_Silent_p.A3301A|MACF1_uc001cda.1_Silent_p.A3188A|MACF1_uc001cdc.1_Silent_p.A2367A	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	5368	Spectrin 7.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGCTCATAGCCAATCAGAAAC	0.468000													10	98					0	0	3.86212e-05	0	0
TESK2	10420	broad.mit.edu	37	1	45813333	45813333	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:45813333G>A	uc001cns.1	-	7	1059	c.656C>T	c.(655-657)TCC>TTC	p.S219F	TESK2_uc009vxr.1_Missense_Mutation_p.S219F|TESK2_uc010olo.1_Missense_Mutation_p.S136F|TESK2_uc009vxs.1_Missense_Mutation_p.S11F	NM_007170	NP_009101	Q96S53	TESK2_HUMAN	testis-specific protein kinase 2	219	Protein kinase.				actin cytoskeleton organization|focal adhesion assembly|spermatogenesis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(2)|pancreas(1)	5	Acute lymphoblastic leukemia(166;0.155)					CCAGAATGGGGAACCCACCAC	0.463000													32	110					0	0	0.00058488	0	0
TMEM69	51249	broad.mit.edu	37	1	46159260	46159260	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:46159260A>G	uc001cor.1	+	3	623	c.427A>G	c.(427-429)ATC>GTC	p.I143V		NM_016486	NP_057570	Q5SWH9	TMM69_HUMAN	transmembrane protein 69	143						integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTTGGGTGGGATCAGATGGGG	0.438000													25	114					0	0	0.000117367	0	0
ZFYVE9	9372	broad.mit.edu	37	1	52704507	52704507	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:52704507A>G	uc001cto.2	+	4	1590	c.1418A>G	c.(1417-1419)TAT>TGT	p.Y473C	ZFYVE9_uc001ctn.2_Missense_Mutation_p.Y473C|ZFYVE9_uc001ctp.2_Missense_Mutation_p.Y473C	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	473					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						GCAGCAAATTATCTATCTAAT	0.378000													23	115					0	0	0.000117367	0	0
ZYG11B	79699	broad.mit.edu	37	1	53262039	53262039	+	Silent	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:53262039T>C	uc001cuj.2	+	7	1605	c.1410T>C	c.(1408-1410)GCT>GCC	p.A470A	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Silent_p.A461A|ZYG11B_uc009vzh.2_5'Flank	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	470							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TGGCAGTTGCTATCATTTCTA	0.433000													8	52					0	0	0.000442599	0	0
ODF2L	57489	broad.mit.edu	37	1	86851227	86851227	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:86851227G>A	uc001dll.1	-	3	500	c.160C>T	c.(160-162)CTT>TTT	p.L54F	ODF2L_uc001dlm.1_Missense_Mutation_p.L54F|ODF2L_uc001dln.2_Missense_Mutation_p.L54F|ODF2L_uc001dlo.2_Intron|ODF2L_uc001dlp.2_Missense_Mutation_p.L54F|ODF2L_uc010osg.1_Missense_Mutation_p.L54F|ODF2L_uc001dlq.1_Intron|ODF2L_uc009wcr.1_Intron	NM_020729	NP_065780	Q9ULJ1	ODF2L_HUMAN	outer dense fiber of sperm tails 2-like isoform	54	Potential.					centrosome				ovary(1)	1				all cancers(265;0.0313)|Epithelial(280;0.0611)		GCTTCCTTAAGTGTTGCTTCC	0.323000													10	33					0	0	0.000442599	0	0
ABCA4	24	broad.mit.edu	37	1	94522330	94522330	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:94522330A>G	uc001dqh.2	-	15	2313	c.2209T>C	c.(2209-2211)TTG>CTG	p.L737L	ABCA4_uc010otn.1_Intron	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	737	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AAAGCCAACAAGAACAGGAAG	0.522000													3	10					0	0	6.4e-05	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94639942	94639942	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:94639942A>G	uc001dqj.3	-	23	3638	c.3269T>C	c.(3268-3270)CTA>CCA	p.L1090P	ARHGAP29_uc009wdq.1_Intron	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	1090					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CTTGGCAGTTAGGCTGTTTTG	0.418000													46	224					0	0	0.000147903	0	0
GSTM1	2944	broad.mit.edu	37	1	110233169	110233169	+	Missense_Mutation	SNP	T	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:110233169T>G	uc001dyk.2	+	7	628	c.550T>G	c.(550-552)TTC>GTC	p.F184V	GSTM1_uc001dyl.2_Intron	NM_000561	NP_000552	P09488	GSTM1_HUMAN	glutathione S-transferase mu 1 isoform 1	184	GST C-terminal.				xenobiotic metabolic process	cytosol	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0122)|Colorectal(144;0.0129)|Epithelial(280;0.0146)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.047)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	TCTGAAGGACTTCATCTCCCG	0.488000									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				62	105					0	0	0.000147903	0	0
SCNM1	79005	broad.mit.edu	37	1	151140654	151140655	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:151140654_151140655CC>AA	uc001ewz.2	+	6	545_546	c.433_434CC>AA	c.(433-435)CCT>AAT	p.P145N	LYSMD1_uc001ewy.2_5'Flank|LYSMD1_uc010pcr.1_5'Flank|SCNM1_uc009wmn.2_RNA	NM_024041	NP_076946	Q9BWG6	SCNM1_HUMAN	sodium channel modifier 1	145					mRNA processing|RNA splicing	nucleus	metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CTCCCTTTCCCCTATGCCACCC	0.550000													10	371					0	0	6.4e-05	0	0
ATP1A2	477	broad.mit.edu	37	1	160105252	160105252	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:160105252G>A	uc001fvc.2	+	16	2276	c.2144G>A	c.(2143-2145)GGG>GAG	p.G715E	ATP1A2_uc001fvb.2_Missense_Mutation_p.G715E|ATP1A2_uc001fvd.2_Missense_Mutation_p.G451E	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	715	Cytoplasmic (Potential).		G -> R (in FHM2; de novo mutation in a sporadic case).		ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ACGGGTGACGGGGTGAACGAC	0.602000													11	48					0	0	6.40141e-05	0	0
USP21	27005	broad.mit.edu	37	1	161134645	161134645	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:161134645T>A	uc010pke.1	+	12	1782	c.1405T>A	c.(1405-1407)TCC>ACC	p.S469T	USP21_uc010pkf.1_Missense_Mutation_p.S469T|PPOX_uc001fyj.2_5'Flank|PPOX_uc001fyn.2_5'Flank|PPOX_uc001fyg.2_5'Flank|PPOX_uc001fyl.2_5'Flank|PPOX_uc001fym.2_5'Flank|PPOX_uc001fyk.2_5'Flank|PPOX_uc001fyh.2_5'Flank|PPOX_uc010pkg.1_5'Flank|PPOX_uc009wuc.1_5'Flank|PPOX_uc010pkh.1_5'Flank|PPOX_uc001fyi.2_5'Flank	NM_001014443	NP_001014443	Q9UK80	UBP21_HUMAN	ubiquitin-specific protease 21	469					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding|NEDD8-specific protease activity|protein binding|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)|prostate(1)|breast(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			ATTTTCTGCCTCCCGAGGCTC	0.527000													16	62					0	0	0.000132079	0	0
NME7	29922	broad.mit.edu	37	1	169102046	169102046	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:169102046A>G	uc001gfu.2	-	12	1346	c.1108T>C	c.(1108-1110)TTC>CTC	p.F370L	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Missense_Mutation_p.F334L	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	370					CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					ATCTTGAAGAAGTATTGAACC	0.388000													5	43					0	0	3.59834e-05	0	0
PPFIA4	8497	broad.mit.edu	37	1	203036824	203036824	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr1:203036824A>G	uc001gyz.2	+	13	2127	c.1534A>G	c.(1534-1536)ACC>GCC	p.T512A	PPFIA4_uc009xaj.2_Missense_Mutation_p.T1143A|PPFIA4_uc010pqf.1_Missense_Mutation_p.T725A|PPFIA4_uc001gza.2_Missense_Mutation_p.T503A|PPFIA4_uc001gzb.1_Missense_Mutation_p.T198A|PPFIA4_uc001gzc.1_Missense_Mutation_p.T54A	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	512	SAM 2.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						TGCCTGCAGAACCAGTCTTCA	0.552000													8	51					0	0	0.000157383	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													4	75					0	0	0.00024832	0	0
LRIT1	26103	broad.mit.edu	37	10	85997318	85997318	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr10:85997318C>T	uc001kcz.1	-	2	269	c.247G>A	c.(247-249)GGC>AGC	p.G83S		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	83	Lumenal (Potential).					integral to endoplasmic reticulum membrane					0						TCCAGGCGGCCCAGGGGCCTG	0.726000													9	35					0	0	0.000442599	0	0
ZNF143	7702	broad.mit.edu	37	11	9519250	9519250	+	Silent	SNP	T	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr11:9519250T>G	uc001mhr.2	+	10	988	c.870T>G	c.(868-870)ACT>ACG	p.T290T	ZNF143_uc009yfu.2_Silent_p.T289T|ZNF143_uc010rby.1_Silent_p.T259T	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	290	C2H2-type 2.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		ACGTCAGAACTCATACAGGAG	0.328000													7	34					0	0	8.12818e-05	0	0
FADS1	3992	broad.mit.edu	37	11	61578255	61578255	+	Missense_Mutation	SNP	A	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr11:61578255A>C	uc010rlm.1	-	5	1011	c.883T>G	c.(883-885)TTC>GTC	p.F295V	FADS1_uc001nsh.2_Missense_Mutation_p.F154V|FADS1_uc010rln.1_Missense_Mutation_p.F154V	NM_013402	NP_037534	O60427	FADS1_HUMAN	fatty acid desaturase 1	238	Cytoplasmic (Potential).				cell-cell signaling|cellular response to starvation|electron transport chain|icosanoid biosynthetic process|phospholipid biosynthetic process|regulation of cell differentiation|regulation of transcription, DNA-dependent|transport	endoplasmic reticulum membrane|integral to membrane|microsome	C-5 sterol desaturase activity|heme binding|protein binding			central_nervous_system(1)	1					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AAGGCAAAGAAGAAGGGATGC	0.567000													22	95					0	0	0.000375601	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120302543	120302543	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr11:120302543A>T	uc001pxl.1	+	11	854	c.847A>T	c.(847-849)ACA>TCA	p.T283S	ARHGEF12_uc009zat.2_Missense_Mutation_p.T264S|ARHGEF12_uc010rzn.1_Missense_Mutation_p.T180S|ARHGEF12_uc009zau.1_Missense_Mutation_p.T180S	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	283					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		TGAGGCAGAAACAGATCCTGG	0.473000			T	MLL	AML								6	52					0	0	8.12818e-05	0	0
FKBP4	2288	broad.mit.edu	37	12	2910312	2910312	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:2910312G>T	uc001qkz.2	+	9	1260	c.1062G>T	c.(1060-1062)AAG>AAT	p.K354N		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	354	TPR 3.|Interaction with tubulin (By similarity).				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	ACAACGAGAAGGGCCTCTTCC	0.562000													26	64					2.79863e-10	5.43799e-09	9.22233e-05	1	0
STYK1	55359	broad.mit.edu	37	12	10780290	10780290	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:10780290G>C	uc001qys.2	-	7	1188	c.667C>G	c.(667-669)CTC>GTC	p.L223V		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	223	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						TTTTCTGTGAGATCATAGAGA	0.398000										HNSCC(73;0.22)			21	40					0	0	0.000175454	0	0
BCL2L14	79370	broad.mit.edu	37	12	12232370	12232370	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:12232370C>T	uc001rac.2	+	2	332	c.131C>T	c.(130-132)TCA>TTA	p.S44L	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.S44L|BCL2L14_uc001rae.2_Missense_Mutation_p.S44L	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	44					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		GCTCTCTTCTCACCAAAGCTG	0.478000													8	56					0	0	0.000274275	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19506893	19506893	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:19506893A>G	uc001reb.2	+	20	2683	c.2597A>G	c.(2596-2598)TAT>TGT	p.Y866C	PLEKHA5_uc010sie.1_Missense_Mutation_p.Y1027C|PLEKHA5_uc001rea.2_Missense_Mutation_p.Y924C|PLEKHA5_uc009zin.2_Missense_Mutation_p.Y624C|PLEKHA5_uc010sif.1_Missense_Mutation_p.Y855C|PLEKHA5_uc010sig.1_Missense_Mutation_p.Y848C|PLEKHA5_uc010sih.1_Missense_Mutation_p.Y821C|PLEKHA5_uc001rec.1_Missense_Mutation_p.Y675C|PLEKHA5_uc009zio.2_Missense_Mutation_p.Y132C	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	866							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					ATAGCTTCCTATGTAACCTTG	0.368000													22	72					0	0	0.000229342	0	0
SLC38A4	55089	broad.mit.edu	37	12	47178364	47178364	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:47178364T>A	uc001rpi.2	-	7	853	c.454A>T	c.(454-456)ATT>TTT	p.I152F	SLC38A4_uc001rpj.2_Missense_Mutation_p.I152F|SLC38A4_uc009zkl.2_Missense_Mutation_p.I152F	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	152	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					AAAGCTCCAATTTTTCCCGGC	0.333000													22	116					0	0	0.00047179	0	0
EIF4B	1975	broad.mit.edu	37	12	53416313	53416313	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:53416313G>C	uc001sbh.3	+	6	775	c.569G>C	c.(568-570)CGG>CCG	p.R190P	EIF4B_uc009zmp.1_RNA|EIF4B_uc010snu.1_Missense_Mutation_p.R190P|EIF4B_uc010snv.1_Missense_Mutation_p.R151P|EIF4B_uc001sbi.2_5'UTR	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	190	Arg-rich.|Asp-rich.				insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						GATAGAAATCGGGATTCTGAC	0.418000													13	77					0	0	0.000151284	0	0
PDE1B	5153	broad.mit.edu	37	12	54966389	54966390	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:54966389_54966390CC>AA	uc001sgd.1	+	7	765_766	c.599_600CC>AA	c.(598-600)CCC>CAA	p.P200Q	PDE1B_uc010soz.1_Missense_Mutation_p.P63Q|PDE1B_uc010spa.1_Missense_Mutation_p.P159Q|PDE1B_uc001sgf.2_Missense_Mutation_p.P63Q|PDE1B_uc001sge.2_Missense_Mutation_p.P180Q|PDE1B_uc009znq.2_5'UTR	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	200	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCGCAGATTCCCACTGTGTTTT	0.450000													14	818					0	0	6.4e-05	0	0
RAB5B	5869	broad.mit.edu	37	12	56385887	56385887	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:56385887A>T	uc001siv.2	+	6	656	c.539A>T	c.(538-540)AAG>ATG	p.K180M	RAB5B_uc001siw.2_Missense_Mutation_p.K180M|RAB5B_uc009zog.2_Missense_Mutation_p.K120M|RAB5B_uc010spz.1_Missense_Mutation_p.K139M	NM_002868	NP_002859	P61020	RAB5B_HUMAN	RAB5B, member RAS oncogene family	180					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|membrane fraction|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.235)			CTAGCTAAGAAGTTGCCAAAG	0.507000													22	60					0	0	0.000586117	0	0
SLC26A10	65012	broad.mit.edu	37	12	58014188	58014189	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:58014188_58014189CC>AA	uc001spe.2	+	1	496_497	c.185_186CC>AA	c.(184-186)CCC>CAA	p.P62Q	uc001spc.2_5'Flank|SLC26A10_uc001spf.2_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	62	Helical; (Potential).					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TCTTTCTTCCCCGTCCTCATCT	0.540000													12	596					0	0	6.4e-05	0	0
FGD6	55785	broad.mit.edu	37	12	95603626	95603626	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:95603626A>G	uc001tdp.3	-	2	1658	c.1434T>C	c.(1432-1434)CCT>CCC	p.P478P	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	478					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TTTGCATTTGAGGGGCAGAAA	0.393000													3	111					0	0	6.4e-05	0	0
CCDC38	120935	broad.mit.edu	37	12	96273432	96273432	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:96273432G>A	uc001tek.1	-	12	1366	c.1132C>T	c.(1132-1134)CAG>TAG	p.Q378*		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	378										skin(1)	1						GTTTTATCCTGTATAACTTTT	0.368000													18	76					0	0	0.000566183	0	0
TRPC4	7223	broad.mit.edu	37	13	38237841	38237841	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr13:38237841G>T	uc001uws.2	-	6	1635	c.1400C>A	c.(1399-1401)TCA>TAA	p.S467*	TRPC4_uc010abv.2_Nonsense_Mutation_p.S47*|TRPC4_uc001uwt.2_Nonsense_Mutation_p.S467*|TRPC4_uc010tey.1_Nonsense_Mutation_p.S467*|TRPC4_uc010abw.2_Nonsense_Mutation_p.S294*|TRPC4_uc010abx.2_Nonsense_Mutation_p.S467*|TRPC4_uc010aby.2_Nonsense_Mutation_p.S467*	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	467	Extracellular (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CATGTCCCATGATTCTCGTGG	0.423000													7	25					2.0095e-06	3.69438e-05	8.12818e-05	1	0
GPR180	160897	broad.mit.edu	37	13	95271585	95271585	+	Splice_Site	SNP	G	A	A	rs138676753		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr13:95271585G>A	uc001vly.2	+	4	764	c.686_splice	c.e4+1	p.S229_splice	GPR180_uc001vlz.2_Splice_Site_p.S128_splice|GPR180_uc010afi.2_Intron	NM_180989	NP_851320	Q86V85	GP180_HUMAN	G protein-coupled receptor 180 precursor							integral to membrane				breast(1)	1	all_neural(89;0.0684)|Medulloblastoma(90;0.163)					ATTTCTCCAGGTAACTCAAAA	0.338000													7	66					0	0	0.000274275	0	0
ERCC5	2073	broad.mit.edu	37	13	103492131	103492131	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr13:103492131C>G	uc001vpu.1	+	9	1550	c.1428C>G	c.(1426-1428)GAC>GAG	p.D476E	BIVM_uc001vps.2_Missense_Mutation_p.D476E|BIVM_uc010agc.2_Missense_Mutation_p.D254E|BIVM_uc001vpv.2_Missense_Mutation_p.D247E	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	Error:Variant_position_missing_in_P28715_after_alignment					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TCCATCAGGACTCGGCATGGA	0.468000			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				25	118					0	0	0.000586117	0	0
KTN1	3895	broad.mit.edu	37	14	56079010	56079010	+	Silent	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr14:56079010C>A	uc001xcb.2	+	3	546	c.244C>A	c.(244-246)CGA>AGA	p.R82R	KTN1_uc001xce.2_Silent_p.R82R|KTN1_uc001xcc.2_Silent_p.R82R|KTN1_uc001xcd.2_Silent_p.R82R|KTN1_uc010trb.1_Silent_p.R82R|KTN1_uc001xcf.1_Silent_p.R82R	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	82	Lumenal (Potential).				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GAGTGTACCTCGAGACTTTAA	0.313000			T	RET	papillary thryoid								17	62					3.32936e-07	6.26549e-06	7.07596e-05	1	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612000													3	33					0	0	0.00024832	0	0
ANPEP	290	broad.mit.edu	37	15	90349567	90349567	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr15:90349567T>C	uc002bop.3	-	2	540	c.248A>G	c.(247-249)GAT>GGT	p.D83G		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	83	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CCGGTAGGAATCGGGTTTCAG	0.617000													14	56					0	0	0.000219431	0	0
SV2B	9899	broad.mit.edu	37	15	91769497	91769497	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr15:91769497G>C	uc002bqv.2	+	1	395	c.4G>C	c.(4-6)GAT>CAT	p.D2H	SV2B_uc002bqt.2_Missense_Mutation_p.D2H|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	2	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CCAAGGAATGGATGACTACAA	0.478000													11	24					0	0	6.40141e-05	0	0
RBBP6	5930	broad.mit.edu	37	16	24582943	24582943	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr16:24582943G>C	uc002dmh.2	+	18	5596	c.4556G>C	c.(4555-4557)AGA>ACA	p.R1519T	RBBP6_uc002dmi.2_Missense_Mutation_p.R1485T|RBBP6_uc010bxr.2_Missense_Mutation_p.R679T|RBBP6_uc002dmk.2_Missense_Mutation_p.R1352T	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1519	Interaction with p53 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AGGGAAGAGAGAGATTTGCCT	0.358000													7	29					0	0	0.000157383	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53691402	53691402	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr16:53691402A>G	uc002ehp.2	-	13	1608	c.1544T>C	c.(1543-1545)ATG>ACG	p.M515T	RPGRIP1L_uc002eho.3_Missense_Mutation_p.M515T|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.M515T|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.M515T|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.M515T	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	515	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CATAATTAGCATGTTTCTTGT	0.313000													11	52					0	0	0.000219431	0	0
CNTROB	116840	broad.mit.edu	37	17	7850949	7850949	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:7850949C>A	uc002gjq.2	+	15	2973	c.2054C>A	c.(2053-2055)CCT>CAT	p.P685H	CNTROB_uc002gjp.2_Missense_Mutation_p.P685H|CNTROB_uc002gjr.2_Missense_Mutation_p.P587H	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	685	Pro-rich.|Required for centrosome localization.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				AGGCCATTCCCTGAGGAAGAT	0.562000													7	172					0.000157383	0.00282817	0.000157383	1	0
LOC220594	220594	broad.mit.edu	37	17	18422906	18422906	+	RNA	SNP	A	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:18422906A>T	uc010cqe.2	-	1		c.1661T>A			LOC220594_uc010cqf.2_RNA|LOC220594_uc002gty.2_RNA	NR_003554				Homo sapiens mRNA for TL132.												0						CTCACTGGTGAAAGCACGGAG	0.512000													16	41					0	0	0.000308642	0	0
AP2B1	163	broad.mit.edu	37	17	33966737	33966737	+	Missense_Mutation	SNP	A	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:33966737A>C	uc002hjr.2	+	11	1584	c.1395A>C	c.(1393-1395)TTA>TTC	p.L465F	AP2B1_uc002hjq.2_Missense_Mutation_p.L465F|AP2B1_uc010wci.1_Missense_Mutation_p.L427F|AP2B1_uc002hjs.2_Missense_Mutation_p.L408F|AP2B1_uc002hjt.2_Missense_Mutation_p.L465F|AP2B1_uc010ctv.2_Missense_Mutation_p.L465F|AP2B1_uc010wcj.1_Missense_Mutation_p.L202F	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	465					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CAGATGAGTTACTAGAAAGCT	0.433000													22	69					0	0	0.000375601	0	0
CBX1	10951	broad.mit.edu	37	17	46152378	46152378	+	Silent	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:46152378G>A	uc002ind.3	-	4	884	c.403C>T	c.(403-405)CTG>TTG	p.L135L	CBX1_uc002ine.3_Silent_p.L135L	NM_006807	NP_006798	P83916	CBX1_HUMAN	heterochromatin protein 1-beta	135	Chromo 2; shadow subtype.	PxVxL motif (By similarity).				nuclear heterochromatin|nucleoplasm|spindle	chromatin binding|enzyme binding				0						CATTTCATCAGGAACATGAGC	0.483000													44	160					0	0	0.000147903	0	0
MTMR4	9110	broad.mit.edu	37	17	56572475	56572475	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:56572475C>T	uc002iwj.2	-	16	3138	c.3028G>A	c.(3028-3030)GAT>AAT	p.D1010N		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	1010						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCATCATCATCCAAATACAGA	0.512000													51	128					0	0	0.000147903	0	0
CLTC	1213	broad.mit.edu	37	17	57771125	57771125	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:57771125T>C	uc002ixq.1	+	32	5383	c.4940T>C	c.(4939-4941)GTT>GCT	p.V1647A	CLTC_uc002ixr.1_Missense_Mutation_p.V1651A	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1647	Heavy chain arm.|Proximal segment.|Trimerization (By similarity).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GGACCCAGTGTTGCCGTCCCT	0.557000			T	ALK|TFE3	ALCL|renal 								44	71					0	0	0.000147903	0	0
ACE	1636	broad.mit.edu	37	17	61570904	61570904	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:61570904G>T	uc002jau.1	+	20	3042	c.3020G>T	c.(3019-3021)AGG>ATG	p.R1007M	ACE_uc002jav.1_Missense_Mutation_p.R433M|ACE_uc010ddv.1_Missense_Mutation_p.R234M|ACE_uc010wpj.1_Missense_Mutation_p.R433M|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.R253M	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1007	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GTGGCCTTGAGGGAGGGTGCC	0.582000													16	57					8.60227e-14	1.69913e-12	0.000422831	1	0
TMC8	147138	broad.mit.edu	37	17	76133812	76133812	+	Silent	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:76133812C>T	uc002jup.2	+	11	1648	c.1266C>T	c.(1264-1266)TCC>TCT	p.S422S	TMC8_uc002juq.2_Silent_p.S199S|TMC8_uc010wtr.1_Missense_Mutation_p.R128C|TMC8_uc002jur.1_5'Flank	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	422	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			GGGAGAACTCCGTGGGGGAGG	0.642000									Epidermodysplasia_Verruciformis_Familial_Clustering_of				12	71					0	0	0.000151284	0	0
DYM	54808	broad.mit.edu	37	18	46956680	46956680	+	Missense_Mutation	SNP	T	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr18:46956680T>G	uc002ldi.1	-	2	450	c.85A>C	c.(85-87)AAT>CAT	p.N29H	DYM_uc010xdf.1_Missense_Mutation_p.N29H	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	29						Golgi apparatus					0						AACGGGTCATTCTCAGAGATA	0.423000													24	112					0	0	0.000586117	0	0
SERPINB2	5055	broad.mit.edu	37	18	61562567	61562567	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr18:61562567G>T	uc010xeu.1	+	4	571	c.238G>T	c.(238-240)GGG>TGG	p.G80W	SERPINB2_uc002ljo.2_Missense_Mutation_p.G80W|SERPINB2_uc010dqh.2_Missense_Mutation_p.G10W|SERPINB2_uc002ljp.1_5'Flank|SERPINB2_uc002ljq.1_5'Flank	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	80					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TACCAGCTGTGGGTTCATGCA	0.428000													27	134					2.70662e-09	5.21679e-08	0.000279167	1	0
ZNF699	374879	broad.mit.edu	37	19	9406673	9406673	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:9406673G>C	uc002mlc.1	-	5	1407	c.1407C>G	c.(1405-1407)CAC>CAG	p.H469Q		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	469	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTTTCCAGTGTGATCTCTCA	0.458000													6	39					0	0	0.000157383	0	0
PIK3R2	5296	broad.mit.edu	37	19	18274091	18274091	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:18274091G>A	uc002nia.1	+	11	1821	c.1309G>A	c.(1309-1311)GAC>AAC	p.D437N	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	437					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						TGTCAAGGAGGACAGCGTGGA	0.577000													10	50					0	0	6.40141e-05	0	0
ZNF85	7639	broad.mit.edu	37	19	21132080	21132080	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:21132080G>A	uc002npg.3	+	4	887	c.760G>A	c.(760-762)GGA>AGA	p.G254R	ZNF85_uc010ecn.2_Missense_Mutation_p.G189R|ZNF85_uc010eco.2_Missense_Mutation_p.G202R|ZNF85_uc002npi.2_Missense_Mutation_p.G195R	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						AATTCATACTGGAGAGAAACC	0.353000													8	23					0	0	0.000157383	0	0
ZNF85	7639	broad.mit.edu	37	19	21132138	21132138	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:21132138T>C	uc002npg.3	+	4	945	c.818T>C	c.(817-819)CTT>CCT	p.L273P	ZNF85_uc010ecn.2_Missense_Mutation_p.L208P|ZNF85_uc010eco.2_Missense_Mutation_p.L221P|ZNF85_uc002npi.2_Missense_Mutation_p.L214P	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	273	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						TTCTCAACTCTTACTACCCAT	0.348000													4	24					0	0	0.00024832	0	0
LGI4	163175	broad.mit.edu	37	19	35617765	35617765	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:35617765T>A	uc002nxx.2	-	7	1379	c.785A>T	c.(784-786)GAG>GTG	p.E262V	LGI4_uc002nxy.1_Missense_Mutation_p.E90V|LGI4_uc002nxz.1_Missense_Mutation_p.E90V	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	262						extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			ACCGGGCAGCTCTTCCTCGGG	0.687000													5	23					0	0	0.000602214	0	0
SUPT5H	6829	broad.mit.edu	37	19	39964723	39964723	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:39964723C>A	uc002olo.3	+	26	2792	c.2613C>A	c.(2611-2613)AAC>AAA	p.N871K	SUPT5H_uc002olp.3_Missense_Mutation_p.N871K|SUPT5H_uc002olq.3_Missense_Mutation_p.N867K|SUPT5H_uc002oln.3_Missense_Mutation_p.N871K|SUPT5H_uc002olr.3_Missense_Mutation_p.N871K|SUPT5H_uc002ols.1_Missense_Mutation_p.N494K	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	871	10 X 8 AA approximate tandem repeats of P-[TS]-P-S-P-[QA]-[SG]-Y, motif CTR2.|Pro-rich.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CACAGGTCAACCCACAATACA	0.647000											OREG0025462	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	45					7.48243e-07	1.39711e-05	0.000442599	1	0
LGALS13	29124	broad.mit.edu	37	19	40095901	40095901	+	Missense_Mutation	SNP	G	T	T	rs138148689		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:40095901G>T	uc002omb.2	+	3	216	c.176G>T	c.(175-177)GGC>GTC	p.G59V		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	59	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			GTGCACTTTGGCAATCATGTG	0.498000													12	54					9.31168e-06	0.000168598	0.000151284	1	0
LIPE	3991	broad.mit.edu	37	19	42907053	42907053	+	Silent	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:42907053G>A	uc002otr.2	-	9	2950	c.2673C>T	c.(2671-2673)ACC>ACT	p.T891T	uc010eif.1_Intron	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	891					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				ACATCTCGGGGGTGTCCGACG	0.612000													16	53					0	0	0.000132079	0	0
ZNF223	7766	broad.mit.edu	37	19	44570872	44570872	+	Silent	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:44570872C>T	uc002oyf.1	+	5	1144	c.891C>T	c.(889-891)TTC>TTT	p.F297F	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	297	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				GTGTGAGCTTCCGTCTTAGGT	0.448000													13	76					0	0	0.000151284	0	0
PIH1D1	55011	broad.mit.edu	37	19	49950353	49950353	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:49950353A>G	uc002pns.2	-	7	899	c.615T>C	c.(613-615)CCT>CCC	p.P205P	uc002pnr.1_5'Flank	NM_017916	NP_060386	Q9NWS0	PIHD1_HUMAN	NOP17	205					box C/D snoRNP assembly	pre-snoRNP complex					0		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00152)|GBM - Glioblastoma multiforme(486;0.0244)		GAGGCTTTTCAGGCCTGAGGA	0.607000													3	82					0	0	0.00024832	0	0
FCGRT	2217	broad.mit.edu	37	19	50017313	50017313	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:50017313A>G	uc002poe.2	+	3	734	c.248A>G	c.(247-249)TAT>TGT	p.Y83C	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Missense_Mutation_p.Y83C|FCGRT_uc002pof.1_5'UTR|FCGRT_uc010yax.1_Missense_Mutation_p.Y83C|FCGRT_uc002poh.1_5'Flank	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	83	Extracellular (Potential).|Alpha-1.				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		GTGTCCTGGTATTGGGAGAAA	0.582000													17	23					0	0	7.07596e-05	0	0
ZNF473	25888	broad.mit.edu	37	19	50549983	50549983	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:50549983G>C	uc002prn.2	+	5	2520	c.2283G>C	c.(2281-2283)CAG>CAC	p.Q761H	ZNF473_uc002prm.2_Missense_Mutation_p.Q761H|ZNF473_uc010ybo.1_Missense_Mutation_p.Q749H	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	761	C2H2-type 17.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		ATGTTTGTCAGGAATGCGGGA	0.522000											OREG0025632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	68					0	0	0.00047179	0	0
TTYH1	57348	broad.mit.edu	37	19	54937848	54937848	+	Splice_Site	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:54937848A>G	uc002qfq.2	+	5	731	c.639_splice	c.e5-2	p.R213_splice	TTYH1_uc010yey.1_Splice_Site_p.R262_splice|TTYH1_uc002qfr.2_Splice_Site_p.R213_splice|TTYH1_uc002qft.2_Splice_Site_p.R213_splice|TTYH1_uc002qfu.1_Splice_Site_p.R125_splice	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1						cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		CTCCCCTCCCAGGTGGCTGGC	0.652000													18	74					0	0	0.000132079	0	0
KIR2DL4	3805	broad.mit.edu	37	19	55324637	55324637	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr19:55324637C>T	uc010yfm.1	+	6	804	c.764C>T	c.(763-765)ACC>ATC	p.T255I	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Missense_Mutation_p.T250I|KIR2DL4_uc002qhg.2_Intron|KIR2DL4_uc002qhi.2_Missense_Mutation_p.T238I|KIR2DL4_uc002qhh.2_Intron|KIR2DL4_uc002qhj.2_Intron|KIR2DL4_uc002qhf.2_Intron|KIR2DL4_uc010esd.2_Intron|KIR2DL4_uc010ese.2_RNA	NM_002255	NP_002246	Q99706	KI2L4_HUMAN	killer cell immunoglobulin-like receptor, two	255	Helical; (Potential).				cellular defense response|regulation of immune response	integral to plasma membrane	protein binding|transmembrane receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0192)		ATCCTCTTTACCATCCTTCCC	0.502000													22	29					0	0	0.000375601	0	0
ANAPC1	64682	broad.mit.edu	37	2	112608404	112608404	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:112608404A>G	uc002thi.2	-	14	1846	c.1599T>C	c.(1597-1599)GAT>GAC	p.D533D		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	533					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TACTAACGCCATCTAGTGGAG	0.433000													23	84					0	0	0.000586117	0	0
LRP1B	53353	broad.mit.edu	37	2	141762906	141762906	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:141762906G>T	uc002tvj.1	-	15	3473	c.2501C>A	c.(2500-2502)ACA>AAA	p.T834K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	834	Extracellular (Potential).|EGF-like 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAACTTACATGTGCAAGTTGT	0.413000										TSP Lung(27;0.18)			11	45					9.31168e-06	0.000168598	0.000151284	1	0
FAP	2191	broad.mit.edu	37	2	163074641	163074641	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:163074641A>T	uc002ucd.2	-	9	825	c.617T>A	c.(616-618)CTT>CAT	p.L206H	FAP_uc010zct.1_Missense_Mutation_p.L181H|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.L173H	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	206	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TTTTGTAGCAAGCATTTCCTC	0.294000													12	73					0	0	0.000151284	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:207025358A>G	uc002vbf.1	+	3	285	c.127A>G	c.(127-129)AGC>GGC	p.S43G	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.S43G|EEF1B2_uc002vbh.1_Missense_Mutation_p.S43G|SNORD51_uc002vbi.1_5'Flank|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	43	GST C-terminal.					cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGCCGTGTCCAGCCCACCGCC	0.468000													4	112					0	0	0.00024832	0	0
TNS1	7145	broad.mit.edu	37	2	218678433	218678433	+	Silent	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:218678433T>A	uc002vgt.2	-	26	4922	c.4524A>T	c.(4522-4524)CCA>CCT	p.P1508P	TNS1_uc002vgr.2_Silent_p.P1495P|TNS1_uc002vgs.2_Silent_p.P1487P|TNS1_uc002vgq.2_Silent_p.P8P	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1508	SH2.					cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GCATGATGGTTGGAGGTGGCG	0.582000													10	69					0	0	0.000442599	0	0
FAM134A	79137	broad.mit.edu	37	2	220047044	220047044	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:220047044T>C	uc002vjw.3	+	9	1461	c.1325T>C	c.(1324-1326)CTC>CCC	p.L442P	FAM134A_uc010fwc.2_Missense_Mutation_p.L235P|FAM134A_uc002vjx.2_Intron	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	442						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGTGGTGGCCTCACTGCTCTG	0.622000													30	111					0	0	0.00058488	0	0
GMPPA	29926	broad.mit.edu	37	2	220370077	220370077	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:220370077T>C	uc002vlr.2	+	8	816	c.748T>C	c.(748-750)TCC>CCC	p.S250P	GMPPA_uc002vls.2_Missense_Mutation_p.S250P|GMPPA_uc002vlt.2_Missense_Mutation_p.S250P|GMPPA_uc002vlu.2_Missense_Mutation_p.S250P|GMPPA_uc002vlv.2_Missense_Mutation_p.S250P|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Missense_Mutation_p.S250P	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	250					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		TCAGATCAAGTCCGCAGGGTA	0.607000													14	77					0	0	0.000132079	0	0
THAP4	51078	broad.mit.edu	37	2	242524133	242524134	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr2:242524133_242524134CG>AT	uc002wbt.2	-	6	1844_1845	c.1621_1622CG>AT	c.(1621-1623)CGG>ATG	p.R541M	THAP4_uc002wbs.2_Missense_Mutation_p.R129M	NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	541							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CCTGAACTTCCGGGTGATCTGA	0.480000													6	274					0	0	6.4e-05	0	0
STAU1	6780	broad.mit.edu	37	20	47741019	47741019	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr20:47741019T>A	uc002xud.2	-	7	1126	c.715A>T	c.(715-717)AAA>TAA	p.K239*	STAU1_uc002xua.2_Nonsense_Mutation_p.K158*|STAU1_uc002xub.2_Nonsense_Mutation_p.K164*|STAU1_uc002xuc.2_Nonsense_Mutation_p.K158*|STAU1_uc002xue.2_Nonsense_Mutation_p.K158*|STAU1_uc002xuf.2_Nonsense_Mutation_p.K164*|STAU1_uc002xug.2_Nonsense_Mutation_p.K239*	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	239	DRBM 2.					microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			GCGGCATTTTTCTTTGAAATC	0.483000													67	162					0	0	0.000147903	0	0
CDH26	60437	broad.mit.edu	37	20	58564129	58564130	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr20:58564129_58564130CC>AA	uc002ybe.2	+	9	1494_1495	c.1194_1195CC>AA	c.(1192-1197)CCCCAG>CCAAAG	p.Q399K	CDH26_uc002ybf.1_5'UTR|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	399	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			CCTTTCACCCCCAGAGCTTCAT	0.564000													10	379					0	0	6.4e-05	0	0
DSCAM	1826	broad.mit.edu	37	21	41496201	41496202	+	Missense_Mutation	DNP	AA	TG	TG			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr21:41496201_41496202AA>TG	uc002yyq.1	-	20	4068_4069	c.3616_3617TT>CA	c.(3616-3618)TTT>CAT	p.F1206H	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1206	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCAGGACACAAAGACCATGGAG	0.564000													24	115					0	0	6.4e-05	0	0
CAMK1	8536	broad.mit.edu	37	3	9801228	9801228	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:9801228T>C	uc003bst.2	-	10	1034	c.856A>G	c.(856-858)ATC>GTC	p.I286V	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_Intron|CAMK1_uc003bss.2_Missense_Mutation_p.I60V|uc003bsv.1_5'Flank	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	286	Autoinhibitory domain (By similarity).				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		GACTGGTGGATATTCTTATCT	0.537000													34	129					0	0	0.000191422	0	0
GPD1L	23171	broad.mit.edu	37	3	32169609	32169609	+	Missense_Mutation	SNP	A	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:32169609A>C	uc003cew.2	+	2	149	c.89A>C	c.(88-90)AAA>ACA	p.K30T		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	30					glycerol-3-phosphate catabolic process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0						AATGTCAAGAAACTTCAGAAA	0.368000													7	32					0	0	0.000274275	0	0
FAM55C	91775	broad.mit.edu	37	3	101540473	101540473	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:101540473C>G	uc003dvn.2	+	8	1992	c.1355C>G	c.(1354-1356)CCT>CGT	p.P452R	FAM55C_uc010hpn.2_Missense_Mutation_p.P452R	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	452						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						AGCACCTTCCCTTTGGAAGTG	0.552000													9	39					0	0	0.000274275	0	0
POLQ	10721	broad.mit.edu	37	3	121260288	121260288	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:121260288G>A	uc003eee.3	-	3	511	c.382C>T	c.(382-384)CTT>TTT	p.L128F		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	128	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TTCAAAATAAGTAATTCTGCC	0.348000								DNA_polymerases_(catalytic_subunits)					60	283					0	0	0.000147903	0	0
DNAJC13	23317	broad.mit.edu	37	3	132207161	132207161	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:132207161C>A	uc003eor.2	+	30	3352	c.3287C>A	c.(3286-3288)CCT>CAT	p.P1096H		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1096							heat shock protein binding			ovary(1)|breast(1)	2						ACCTTTGACCCTATCCTTGTT	0.348000													12	49					1.5842e-08	3.00495e-07	0.000151284	1	0
ATR	545	broad.mit.edu	37	3	142284995	142284995	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:142284995C>T	uc003eux.3	-	3	382	c.260G>A	c.(259-261)AGT>AAT	p.S87N		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	87					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						ATGGCTTCCACTCACATTTAC	0.413000								Other_conserved_DNA_damage_response_genes					18	69					0	0	9.7654e-05	0	0
FNDC3B	64778	broad.mit.edu	37	3	172059006	172059007	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:172059006_172059007CG>AT	uc003fhy.2	+	17	2128_2129	c.1956_1957CG>AT	c.(1954-1959)ACCGGC>ACATGC	p.G653C	FNDC3B_uc003fhz.3_Missense_Mutation_p.G653C	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	653	Fibronectin type-III 4.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GCATCAGTACCGGCGGACACAG	0.455000													6	266					0	0	6.4e-05	0	0
SDHAP1	255812	broad.mit.edu	37	3	195692347	195692347	+	Missense_Mutation	SNP	G	A	A	rs62282794	by1000genomes	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:195692347G>A	uc003fvy.2	-	3	310	c.196C>T	c.(196-198)CAC>TAC	p.H66Y	SDHAP1_uc003fvx.3_RNA					Homo sapiens full length insert cDNA clone ZC24D06.												0						TTCCTCCAGTGCTCCTCAAAG	0.572000													4	14					0	0	8.12818e-05	0	0
BOD1L	259282	broad.mit.edu	37	4	13603393	13603393	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:13603393G>T	uc003gmz.1	-	10	5248	c.5131C>A	c.(5131-5133)CAG>AAG	p.Q1711K	BOD1L_uc010idr.1_Missense_Mutation_p.Q1048K	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1711							DNA binding			ovary(5)|breast(1)	6						ATATTTCCCTGGGAGCCATCC	0.428000													10	274					0.000442599	0.00789412	0.000442599	1	0
N4BP2	55728	broad.mit.edu	37	4	40122682	40122682	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:40122682C>G	uc003guy.3	+	9	3289	c.2951C>G	c.(2950-2952)CCA>CGA	p.P984R	N4BP2_uc010ifq.2_Missense_Mutation_p.P904R|N4BP2_uc010ifr.2_Missense_Mutation_p.P904R	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	984						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						AATAGTGCACCAACTGTTTCT	0.443000													7	39					0	0	0.000157383	0	0
SCD5	79966	broad.mit.edu	37	4	83557889	83557889	+	Silent	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:83557889G>C	uc003hna.2	-	4	977	c.657C>G	c.(655-657)TCC>TCG	p.S219S		NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	219	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				CCAAGAAGTAGGAATTCCACA	0.537000													9	31					0	0	0.000274275	0	0
DMP1	1758	broad.mit.edu	37	4	88584223	88584223	+	Silent	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:88584223G>A	uc003hqv.2	+	6	1397	c.1293G>A	c.(1291-1293)GAG>GAA	p.E431E	DMP1_uc003hqw.2_Silent_p.E415E	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	431					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		CCAGCCAGGAGGGCCTCCAGT	0.552000													11	37					0	0	3.86212e-05	0	0
ABCG2	9429	broad.mit.edu	37	4	89034494	89034494	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:89034494G>C	uc003hrg.2	-	9	1648	c.1155C>G	c.(1153-1155)TTC>TTG	p.F385L	ABCG2_uc003hrh.2_Missense_Mutation_p.F385L|ABCG2_uc003hrf.2_Missense_Mutation_p.F253L	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	385	Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	GCAAGTTTTTGAATGAACGCT	0.448000													29	136					0	0	0.000227799	0	0
KIAA0922	23240	broad.mit.edu	37	4	154557454	154557454	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:154557454C>T	uc003inm.3	+	35	4608	c.4556C>T	c.(4555-4557)CCC>CTC	p.P1519L	KIAA0922_uc010ipp.2_Missense_Mutation_p.P1520L|KIAA0922_uc010ipq.2_Missense_Mutation_p.P1288L	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1519	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ATACTTCAGCCCTACCTCACA	0.413000													18	146					0	0	0.000175454	0	0
FNIP2	57600	broad.mit.edu	37	4	159756556	159756556	+	Splice_Site	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:159756556G>A	uc003iqe.3	+	7	839	c.656_splice	c.e7-1	p.A219_splice		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2						DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		CTTTATCTTAGCACACAGCAC	0.383000													48	195					0	0	0.000147903	0	0
LIFR	3977	broad.mit.edu	37	5	38489203	38489203	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr5:38489203G>A	uc010ive.1	-	16	2644	c.2312C>T	c.(2311-2313)TCT>TTT	p.S771F	LIFR_uc003jli.2_Missense_Mutation_p.S771F	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	771	Fibronectin type-III 6.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CCTCATCTTAGATGTGTCTCT	0.343000			T	PLAG1	salivary adenoma								17	66					0	0	0.00047179	0	0
BDP1	55814	broad.mit.edu	37	5	70837317	70837317	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr5:70837317A>T	uc003kbp.1	+	29	6322	c.6059A>T	c.(6058-6060)GAT>GTT	p.D2020V	BDP1_uc003kbo.2_Missense_Mutation_p.D2020V|BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2020					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CATTCAAAGGATAAAAGCCAT	0.303000													26	121					0	0	0.000117367	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140864817	140864817	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr5:140864817A>G	uc003lky.1	+	1	77	c.77A>G	c.(76-78)TAC>TGC	p.Y26C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.Y26C	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	26					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTGGGTTACGTTTGTGGG	0.542000													12	60					0	0	0.00010058	0	0
OR2J3	442186	broad.mit.edu	37	6	29079815	29079815	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr6:29079815A>G	uc011dll.1	+	1	148	c.148A>G	c.(148-150)ATC>GTC	p.I50V		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	50	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTTCATCATCATCCTGTCATA	0.423000													41	184					0	0	0.000147903	0	0
ZBTB22	9278	broad.mit.edu	37	6	33284668	33284668	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr6:33284668C>T	uc003oeb.2	-	2	178	c.26G>A	c.(25-27)AGT>AAT	p.S9N	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.S9N	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	9					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCTGCCCCACTGGGAGACAG	0.657000													9	30					0	0	0.000442599	0	0
UBR2	23304	broad.mit.edu	37	6	42559909	42559909	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr6:42559909C>G	uc011dur.1	+	3	359	c.359C>G	c.(358-360)ACT>AGT	p.T120S	UBR2_uc003osf.2_Missense_Mutation_p.T120S	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	120	UBR-type.				cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			GTTGATCCAACTTGTGTTTTG	0.323000													10	59					0	0	0.000442599	0	0
SLC35B2	347734	broad.mit.edu	37	6	44222677	44222677	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr6:44222677G>C	uc003oxd.2	-	4	1201	c.1065C>G	c.(1063-1065)ATC>ATG	p.I355M	SLC35B2_uc011dvt.1_Missense_Mutation_p.I258M|SLC35B2_uc011dvu.1_Missense_Mutation_p.I222M	NM_178148	NP_835361	Q8TB61	S35B2_HUMAN	solute carrier family 35, member B2	355	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGGTGTAAAAGATGAAGAGCT	0.577000													6	21					0	0	3.59834e-05	0	0
TTYH3	80727	broad.mit.edu	37	7	2691878	2691878	+	Splice_Site	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:2691878T>C	uc003smp.2	+	8	1114	c.927_splice	c.e8+2	p.Q309_splice	TTYH3_uc010ksn.2_Splice_Site_p.Q29_splice|TTYH3_uc003smq.2_Splice_Site_p.Q138_splice	NM_025250	NP_079526	Q9C0H2	TTYH3_HUMAN	tweety 3							chloride channel complex|plasma membrane	chloride channel activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.04e-14)		TTCCAGCAGGTGAGAGCCTGG	0.657000													4	26					0	0	3.59834e-05	0	0
GPNMB	10457	broad.mit.edu	37	7	23313792	23313792	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:23313792C>G	uc003swc.2	+	11	1829	c.1668C>G	c.(1666-1668)AAC>AAG	p.N556K	GPNMB_uc003swb.2_Missense_Mutation_p.N544K|GPNMB_uc011jyy.1_Missense_Mutation_p.N498K|GPNMB_uc011jyz.1_Missense_Mutation_p.N445K	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	556	Cytoplasmic (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			TCCCGGGAAACCAGGAAAAGG	0.428000													13	72					0	0	0.000219431	0	0
TPST1	8460	broad.mit.edu	37	7	65705725	65705725	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:65705725C>A	uc003tuw.2	+	2	665	c.313C>A	c.(313-315)CCC>ACC	p.P105T	TPST1_uc010kzy.2_Intron|TPST1_uc010kzz.2_Missense_Mutation_p.P105T|TPST1_uc010laa.2_Missense_Mutation_p.P105T	NM_003596	NP_003587	O60507	TPST1_HUMAN	tyrosylprotein sulfotransferase 1	105	Lumenal (Potential).				inflammatory response|peptidyl-tyrosine sulfation	Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity				0						CAGGGTCATTCCCCGAATCCT	0.527000													34	54					2.42023e-17	4.8608e-16	0.00058488	1	0
ELN	2006	broad.mit.edu	37	7	73474279	73474279	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:73474279C>T	uc003tzw.2	+	23	1587	c.1496C>T	c.(1495-1497)CCT>CTT	p.P499L	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Missense_Mutation_p.P493L|ELN_uc003tzz.2_Missense_Mutation_p.P412L|ELN_uc003tzo.2_Missense_Mutation_p.P460L|ELN_uc003tzp.2_Missense_Mutation_p.P404L|ELN_uc003tzq.2_Missense_Mutation_p.P357L|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Missense_Mutation_p.P474L|ELN_uc003tzt.2_Missense_Mutation_p.P498L|ELN_uc003tzu.2_Missense_Mutation_p.P479L|ELN_uc003tzv.2_Missense_Mutation_p.P464L|ELN_uc003tzx.2_Missense_Mutation_p.P483L|ELN_uc011kff.1_Missense_Mutation_p.P493L|ELN_uc003tzy.2_Missense_Mutation_p.P469L	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	522	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GGTGTGGCTCCTGGAGTTGGC	0.607000			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						112	181					0	0	0.000147903	0	0
MCM7	4176	broad.mit.edu	37	7	99690937	99690937	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:99690937C>A	uc003usw.1	-	14	2446	c.1936G>T	c.(1936-1938)GGA>TGA	p.G646*	MCM7_uc003usv.1_Nonsense_Mutation_p.G470*|MCM7_uc003usx.1_Nonsense_Mutation_p.G470*	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	646	Interaction with ATRIP.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	CCCTTGTCTCCTAGAAGAGAG	0.483000													28	235					1.75199e-13	3.43217e-12	0.000184323	1	0
TRIM56	81844	broad.mit.edu	37	7	100732355	100732355	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:100732355T>C	uc003uxq.2	+	3	1993	c.1762T>C	c.(1762-1764)TCC>CCC	p.S588P	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	588					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTGAGCCTCTCCCAGGCCAG	0.697000													33	94					0	0	0.000228196	0	0
DLD	1738	broad.mit.edu	37	7	107542828	107542828	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:107542828T>C	uc003vet.2	+	4	367	c.257T>C	c.(256-258)ATT>ACT	p.I86T	DLD_uc010ljm.1_RNA|DLD_uc011kmg.1_Missense_Mutation_p.I86T|DLD_uc011kmh.1_Intron|DLD_uc011kmi.1_Intron	NM_000108	NP_000099	P09622	DLDH_HUMAN	dihydrolipoamide dehydrogenase precursor	86					branched chain family amino acid catabolic process|cell redox homeostasis|lysine catabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle	mitochondrial matrix	dihydrolipoyl dehydrogenase activity			central_nervous_system(1)	1					NADH(DB00157)	GTTGGTTGTATTCCTTCTAAG	0.368000													26	51					0	0	0.000147802	0	0
MET	4233	broad.mit.edu	37	7	116417457	116417457	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr7:116417457G>A	uc003vij.2	+	16	3461	c.3274G>A	c.(3274-3276)GTA>ATA	p.V1092I	MET_uc010lkh.2_Missense_Mutation_p.V1110I|MET_uc011knj.1_Missense_Mutation_p.V662I	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1092	ATP (By similarity).|Protein kinase.|Cytoplasmic (Potential).		V -> I (in RCCP; constitutive autophosphorylation).		axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.Q1029_G1105del(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TTTTGGTTGTGTATATCATGG	0.338000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				18	150					0	0	0.000229342	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497740	1497740	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:1497740T>A	uc003wpl.2	+	2	978	c.881T>A	c.(880-882)CTG>CAG	p.L294Q	DLGAP2_uc003wpm.2_Missense_Mutation_p.L294Q	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	373					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TGGTCTACGCTGACGGTCAGC	0.652000													5	14					0	0	0.000602214	0	0
MCPH1	79648	broad.mit.edu	37	8	6302563	6302563	+	Silent	SNP	T	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:6302563T>C	uc003wqi.2	+	8	1388	c.1320T>C	c.(1318-1320)GCT>GCC	p.A440A	MCPH1_uc003wqh.2_Silent_p.A440A|MCPH1_uc011kwl.1_Silent_p.A392A	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	440						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		CAAGCCCTGCTCAGTTGAGCT	0.403000													14	78					0	0	0.000566183	0	0
HGSNAT	138050	broad.mit.edu	37	8	43002092	43002092	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:43002092C>G	uc003xpx.3	+	2	168	c.120C>G	c.(118-120)GAC>GAG	p.D40E		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	68	Lumenal, vesicle (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			TTCTACCAGACTTAGACAAAA	0.388000													5	21					0	0	0.000602214	0	0
COL14A1	7373	broad.mit.edu	37	8	121170484	121170484	+	Silent	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:121170484A>G	uc003yox.2	+	3	469	c.204A>G	c.(202-204)TCA>TCG	p.S68S		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	68	Fibronectin type-III 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CTCCAACTTCAGGTAAAAACA	0.353000													3	65					0	0	6.4e-05	0	0
ADCY8	114	broad.mit.edu	37	8	131921969	131921969	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:131921969G>C	uc003ytd.3	-	6	1881	c.1625C>G	c.(1624-1626)TCT>TGT	p.S542C	ADCY8_uc010mds.2_Missense_Mutation_p.S542C	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	542	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GATTCCTCCAGATTCGAGTTT	0.463000										HNSCC(32;0.087)			55	206					0	0	0.000147903	0	0
NAPRT1	93100	broad.mit.edu	37	8	144659504	144659504	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr8:144659504A>G	uc003yym.3	-	4	528	c.503T>C	c.(502-504)ATG>ACG	p.M168T	NAPRT1_uc003yyn.3_Missense_Mutation_p.M168T|NAPRT1_uc011lkh.1_Missense_Mutation_p.M168T|NAPRT1_uc003yyo.3_Missense_Mutation_p.M168T	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	168					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CCTCAGGCCCATCTCTAGCAG	0.697000													3	14					0	0	6.4e-05	0	0
DENND4C	55667	broad.mit.edu	37	9	19369966	19369966	+	Missense_Mutation	SNP	C	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr9:19369966C>T	uc003znq.2	+	26	4834	c.4801C>T	c.(4801-4803)CCA>TCA	p.P1601S	DENND4C_uc011lnc.1_Missense_Mutation_p.P931S|DENND4C_uc011lnd.1_Missense_Mutation_p.P889S|DENND4C_uc003znr.2_Missense_Mutation_p.P889S|DENND4C_uc003zns.2_Missense_Mutation_p.P783S	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	1601						integral to membrane				ovary(1)|skin(1)	2						GCAAATGAAGCCAGGCATGAA	0.338000													8	42					0	0	3.86212e-05	0	0
TEK	7010	broad.mit.edu	37	9	27197591	27197591	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr9:27197591A>G	uc003zqi.3	+	12	2345	c.1903A>G	c.(1903-1905)AGT>GGT	p.S635G	TEK_uc011lno.1_Missense_Mutation_p.S592G|TEK_uc011lnp.1_Missense_Mutation_p.S488G|TEK_uc003zqj.1_Missense_Mutation_p.S569G	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	635	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TTGGACCCTTAGTGACAGTAA	0.493000													6	24					0	0	8.12818e-05	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88943326	88943326	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr9:88943326C>G	uc004aoq.2	-	11	1752	c.1537G>C	c.(1537-1539)GAC>CAC	p.D513H	ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.D390H|ZCCHC6_uc004aou.2_Missense_Mutation_p.D513H	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	513					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						GCAGCACTGTCAGTATGTTCC	0.408000													40	147					0	0	0.000374591	0	0
CRAT	1384	broad.mit.edu	37	9	131864688	131864688	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr9:131864688G>T	uc004bxh.2	-	5	903	c.621C>A	c.(619-621)CAC>CAA	p.H207Q	CRAT_uc004bxg.2_Missense_Mutation_p.H186Q|CRAT_uc004bxk.3_Missense_Mutation_p.H186Q	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	207					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	CCTGGTAGTTGTGTACCACGG	0.642000													37	99					5.71845e-15	1.13892e-13	0.000191422	1	0
HDHD1A	8226	broad.mit.edu	37	X	7023838	7023838	+	Missense_Mutation	SNP	T	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chrX:7023838T>G	uc004crv.2	-	2	180	c.103A>C	c.(103-105)AAT>CAT	p.N35H	HDHD1A_uc011mhm.1_Missense_Mutation_p.N58H|HDHD1A_uc011mhn.1_Missense_Mutation_p.N35H|HDHD1A_uc010ndl.2_Missense_Mutation_p.N35H|HDHD1A_uc011mho.1_Missense_Mutation_p.N35H	NM_012080	NP_036212	Q08623	HDHD1_HUMAN	haloacid dehalogenase-like hydrolase domain	35					nucleotide metabolic process		metal ion binding|phosphatase activity				0		Colorectal(8;0.0114)|Medulloblastoma(8;0.184)				TCATAGCGATTACATATTTCT	0.393000													10	17					0	0	6.40141e-05	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910063	101910063	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chrX:101910063T>A	uc004ejj.3	+	5	2023	c.1222T>A	c.(1222-1224)TGG>AGG	p.W408R	GPRASP1_uc004eji.3_Missense_Mutation_p.W408R|GPRASP1_uc010nod.2_Missense_Mutation_p.W408R	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	408						cytoplasm	protein binding			ovary(1)|lung(1)	2						CATTGGGACCTGGTTCTGGGC	0.562000													21	25					0	0	0.000175454	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24908604	24908604	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr10:24908604delT	uc001isb.2	-	9	2707	c.2220delA	c.(2218-2220)AAAfs	p.K740fs	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Frame_Shift_Del_p.K740fs|ARHGAP21_uc010qdc.1_Frame_Shift_Del_p.K575fs|ARHGAP21_uc001isc.1_Frame_Shift_Del_p.K730fs	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	739					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						CAGATGGAGGTTTTTCCCTTA	0.453													25	131	---	---	---	---					
STOX1	219736	broad.mit.edu	37	10	70645179	70645179	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr10:70645179delT	uc001jos.2	+	3	1714	c.1627delT	c.(1627-1629)TTTfs	p.F543fs	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Frame_Shift_Del_p.F433fs	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	543						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						CTCAAGAATCTTTGATGGTAA	0.418													12	41	---	---	---	---					
STK32C	282974	broad.mit.edu	37	10	134144951	134144952	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr10:134144951_134144952insC	uc010quu.1	-	1	405_406	c.289_290insG	c.(289-291)GCGfs	p.A97fs	STK32C_uc009ybc.1_5'UTR|STK32C_uc009ybd.1_Intron|LRRC27_uc001llf.2_5'Flank|LRRC27_uc010quv.1_5'Flank|LRRC27_uc010quw.1_5'Flank|LRRC27_uc001llg.2_5'Flank|LRRC27_uc001lli.2_5'Flank	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	Error:Variant_position_missing_in_Q86UX6_after_alignment							ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		GCGTTTCCTCGCCCCCCTCACT	0.436													8	28	---	---	---	---					
GIF	2694	broad.mit.edu	37	11	59610051	59610052	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr11:59610051_59610052insG	uc001noi.2	-	4	423_424	c.375_376insC	c.(373-378)CCCAACfs	p.P125fs	GIF_uc010rkz.1_3'UTR	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	125_126					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						GCTTCAGCGTTGGGGCCTCCGA	0.525													9	52	---	---	---	---					
GRIP1	23426	broad.mit.edu	37	12	66765625	66765625	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr12:66765625delA	uc001stk.2	-	22	2946	c.2705delT	c.(2704-2706)TTCfs	p.F902fs	GRIP1_uc010sta.1_Frame_Shift_Del_p.F846fs|GRIP1_uc001stj.2_Frame_Shift_Del_p.F669fs|GRIP1_uc001stl.1_Frame_Shift_Del_p.F779fs|GRIP1_uc001stm.2_Frame_Shift_Del_p.F887fs	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	954					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		GCGCTCCTGGAAGCTGGCCTG	0.552													34	168	---	---	---	---					
RCBTB1	55213	broad.mit.edu	37	13	50115836	50115836	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr13:50115836delC	uc001vde.1	-	11	1561	c.1300delG	c.(1300-1302)GACfs	p.D434fs		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	434	BTB 1.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		GGCGGCAGGTCGACTGTGTCT	0.458													15	71	---	---	---	---					
ADAP2	55803	broad.mit.edu	37	17	29261211	29261211	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:29261211delG	uc002hfx.2	+	5	685	c.406delG	c.(406-408)GAAfs	p.E136fs	ADAP2_uc010csk.2_Frame_Shift_Del_p.E142fs|ADAP2_uc002hfy.2_Frame_Shift_Del_p.E136fs|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	136	PH 1.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						AGGTAACCGAGAAGGATTCCT	0.478													10	50	---	---	---	---					
INTS2	57508	broad.mit.edu	37	17	59945081	59945082	+	In_Frame_Ins	INS	-	GAA	GAA			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:59945081_59945082insGAA	uc002izn.2	-	25	3527_3528	c.3451_3452insTTC	c.(3451-3453)CAA>CTTCAA	p.1150_1151insL	INTS2_uc002izm.2_In_Frame_Ins_p.1142_1143insL	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	1150_1151					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						CTTTATTTGTTGAAGACCTACA	0.351													27	105	---	---	---	---					
BAIAP2	10458	broad.mit.edu	37	17	79082274	79082274	+	Splice_Site	DEL	G	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr17:79082274delG	uc002jzg.2	+	13	1609	c.1501_splice	c.e13-1	p.G501_splice	BAIAP2_uc002jyz.3_Splice_Site_p.G501_splice|BAIAP2_uc002jza.2_Splice_Site_p.G501_splice|BAIAP2_uc002jzc.2_Splice_Site_p.G502_splice|BAIAP2_uc002jzb.2_Splice_Site_p.G258_splice|BAIAP2_uc002jzd.2_Splice_Site_p.G501_splice|BAIAP2_uc002jzf.2_Splice_Site_p.G501_splice|BAIAP2_uc002jze.2_Splice_Site_p.G534_splice|BAIAP2_uc010wuh.1_Splice_Site_p.G423_splice|BAIAP2_uc002jzh.2_Splice_Site_p.G502_splice|BAIAP2_uc010wui.1_Splice_Site_p.G364_splice	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2						axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			TCTGCCCCCAGGGCCTGGATG	0.637													12	44	---	---	---	---					
SOCS6	9306	broad.mit.edu	37	18	67992496	67992496	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr18:67992496delA	uc002lkr.1	+	2	908	c.592delA	c.(592-594)AATfs	p.N198fs	SOCS6_uc010dqq.2_Frame_Shift_Del_p.N198fs	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	198					defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				GGCTTCTCATAATGGAGACCT	0.512													28	101	---	---	---	---					
BCR	613	broad.mit.edu	37	22	23523615	23523616	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr22:23523615_23523616insA	uc002zww.2	+	1	1064_1065	c.468_469insA	c.(466-471)TCCAACfs	p.S156fs	BCR_uc002zwx.2_Frame_Shift_Ins_p.S156fs	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	156_157	Kinase.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						CGCTCAGGTCCAACTTCGAGCG	0.738			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								20	66	---	---	---	---					
PLCD1	5333	broad.mit.edu	37	3	38051199	38051201	+	In_Frame_Del	DEL	TCG	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:38051199_38051201delTCG	uc003chn.2	-	9	1513_1515	c.1389_1391delCGA	c.(1387-1392)GACGAG>GAG	p.D463del	PLCD1_uc003chm.2_In_Frame_Del_p.D484del	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	463					intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		CTCAGCAGCCTCGTCTTCGTCTG	0.650													9	33	---	---	---	---					
RPL24	6152	broad.mit.edu	37	3	101401697	101401698	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:101401697_101401698insA	uc003dvh.1	-	4	289_290	c.246_247insT	c.(244-249)ATTACTfs	p.I82fs	RPL24_uc003dvi.1_Frame_Shift_Ins_p.I82fs	NM_000986	NP_000977	P83731	RL24_HUMAN	ribosomal protein L24	82_83					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						GATGCACCAGTAATGGCCCTCT	0.436													23	70	---	---	---	---					
MYH15	22989	broad.mit.edu	37	3	108107907	108107918	+	In_Frame_Del	DEL	TTCCAGTTCACG	-	-	rs143417195	by1000genomes	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:108107907_108107918delTTCCAGTTCACG	uc003dxa.1	-	39	5551_5562	c.5494_5505delCGTGAACTGGAA	c.(5494-5505)CGTGAACTGGAAdel	p.RELE1832del		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1832_1835	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCAGTTCACCTTCCAGTTCACGAACCTGCAAC	0.524													21	117	---	---	---	---					
SEC22A	26984	broad.mit.edu	37	3	122978380	122978380	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:122978380delG	uc003ege.2	+	6	746	c.667delG	c.(667-669)GATfs	p.D223fs	SEC22A_uc003egf.2_Frame_Shift_Del_p.D223fs	NM_012430	NP_036562	Q96IW7	SC22A_HUMAN	SEC22 vesicle trafficking protein homolog A	223	Lumenal (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|integral to membrane	transporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0548)		GAGTGATGGTGATGATTTTAA	0.343													9	46	---	---	---	---					
SLC7A14	57709	broad.mit.edu	37	3	170201153	170201154	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr3:170201153_170201154insA	uc003fgz.2	-	6	1380_1381	c.1064_1065insT	c.(1063-1065)TTCfs	p.F355fs	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	355	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			TCGGCATCGGGAAGAGGGACCC	0.540											OREG0015917	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	102	---	---	---	---					
ANK2	287	broad.mit.edu	37	4	114195785	114195785	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr4:114195785delG	uc003ibe.3	+	15	1763	c.1663delG	c.(1663-1665)GCCfs	p.A555fs	ANK2_uc003ibd.3_Frame_Shift_Del_p.A534fs|ANK2_uc003ibf.3_Frame_Shift_Del_p.A555fs|ANK2_uc003ibc.2_Frame_Shift_Del_p.A531fs|ANK2_uc011cgb.1_Frame_Shift_Del_p.A570fs	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	555	ANK 16.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGCAGGAGCAGCCCACTCCTT	0.517													12	57	---	---	---	---					
SYNPO	11346	broad.mit.edu	37	5	150027927	150027927	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr5:150027927delA	uc003lsn.2	+	3	1196	c.822delA	c.(820-822)CTAfs	p.L274fs	SYNPO_uc003lso.3_Frame_Shift_Del_p.L30fs|SYNPO_uc003lsp.2_Frame_Shift_Del_p.L30fs	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	274					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGTTTATCTAAAGGAGAATG	0.602													24	69	---	---	---	---					
ZFP37	7539	broad.mit.edu	37	9	115806495	115806495	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	g.chr9:115806495delG	uc004bgm.1	-	4	431	c.403delC	c.(403-405)CTCfs	p.L135fs	ZFP37_uc011lwz.1_Frame_Shift_Del_p.L150fs|ZFP37_uc011lxa.1_Frame_Shift_Del_p.L136fs	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	135						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCCCTGAGGAGTTTGTTTTGA	0.353													29	169	---	---	---	---					
