Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	T	T	rs367060		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr1:16946434C>T	uc010ocf.1	-	3		c.464G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTCAGCCTTCCGCCGGGCCAG	0.672000													3	9					0	0	0.00024832	0	0
MCOLN3	55283	broad.mit.edu	37	1	85491894	85491894	+	Silent	SNP	G	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr1:85491894G>C	uc001dkp.2	-	8	999	c.906C>G	c.(904-906)CTC>CTG	p.L302L	MCOLN3_uc001dko.2_5'Flank|MCOLN3_uc001dkq.2_Silent_p.L246L|MCOLN3_uc001dkr.2_Silent_p.L302L|MCOLN3_uc001dks.3_Silent_p.L147L	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	302	Helical; (Potential).					integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		ATCTAATGCAGAGGATTAATG	0.398000													36	59					0	0	0.00148497	0	0
LCE3D	84648	broad.mit.edu	37	1	152552161	152552161	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr1:152552161G>A	uc001fab.2	-	2	309	c.252C>T	c.(250-252)TGC>TGT	p.C84C		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	84					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		AGCCATGGCCGCAGCCAGAGC	0.622000													65	132					0	0	0.00361006	0	0
BCAN	63827	broad.mit.edu	37	1	156615922	156615922	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr1:156615922G>C	uc001fpp.2	+	2	412	c.76G>C	c.(76-78)GAA>CAA	p.E26Q	BCAN_uc001fpo.2_Missense_Mutation_p.E26Q	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	26					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGATGTTCTGGAAGGAGACAG	0.602000													3	53					0	0	6.4e-05	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													5	53					0	0	0.000602214	0	0
VPS11	55823	broad.mit.edu	37	11	118949934	118949934	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr11:118949934C>A	uc010ryx.1	+	15	2404	c.2362C>A	c.(2362-2364)CAG>AAG	p.Q788K	VPS11_uc010ryy.1_Missense_Mutation_p.Q634K	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	788	Potential.				protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		GCAGATTGCACAGGATGAGCT	0.592000													10	19					0.000978159	0.00800725	0.000978159	1	0
CHD4	1108	broad.mit.edu	37	12	6711561	6711561	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr12:6711561C>G	uc001qpo.2	-	3	367	c.203G>C	c.(202-204)AGC>ACC	p.S68T	CHD4_uc001qpn.2_Missense_Mutation_p.S68T|CHD4_uc001qpp.2_Missense_Mutation_p.S65T	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	68					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTGGCGCTTGCTCTTAGGGAT	0.478000													103	222					0	0	0.00361006	0	0
LNX2	222484	broad.mit.edu	37	13	28143269	28143269	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr13:28143269G>A	uc001url.3	-	3	861	c.552C>T	c.(550-552)GGC>GGT	p.G184G	LNX2_uc001urm.1_Silent_p.G184G	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	184							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		CAGGCACTGCGCCTGTCCCCA	0.532000													91	184					0	0	0.00361006	0	0
KLHL1	57626	broad.mit.edu	37	13	70549759	70549759	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr13:70549759C>G	uc001vip.2	-	2	1467	c.673G>C	c.(673-675)GCA>CCA	p.A225P	KLHL1_uc010thm.1_Intron	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	225	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TACCTATGTGCAGGTATCTTT	0.403000													40	87					0	0	0.00285205	0	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597000													5	69					0	0	0.00307968	0	0
ADAM6	8755	broad.mit.edu	37	14	107062535	107062535	+	RNA	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr14:107062535C>G	uc010tyt.1	-	130		c.6143G>C								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGCAGGAGGAAGA	0.512000													3	44					0	0	0.00024832	0	0
UBE3A	7337	broad.mit.edu	37	15	25616649	25616649	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr15:25616649T>A	uc001zaq.2	-	4	681	c.681A>T	c.(679-681)TTA>TTT	p.L227F	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.L204F|UBE3A_uc001zas.2_Missense_Mutation_p.L224F|UBE3A_uc001zat.2_Missense_Mutation_p.L204F	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	227					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		CATCAGGGCCTAATTTTTGCA	0.418000													63	130					0	0	0.00361006	0	0
CCDC78	124093	broad.mit.edu	37	16	775528	775528	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr16:775528G>T	uc002cjg.2	-	4	426	c.320C>A	c.(319-321)ACC>AAC	p.T107N	CCDC78_uc002cjf.2_5'Flank|CCDC78_uc002cji.3_Missense_Mutation_p.T181N|CCDC78_uc002cjj.3_Intron|CCDC78_uc002cjh.2_5'UTR|CCDC78_uc010uuo.1_Missense_Mutation_p.T107N|CCDC78_uc002cjk.2_Missense_Mutation_p.T107N|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	107										central_nervous_system(1)	1		Hepatocellular(780;0.0218)				GCCCTGGCTGGTGCCATCTCC	0.652000													18	36					6.49762e-13	5.57844e-12	0.00074312	1	0
SNX29	92017	broad.mit.edu	37	16	12618621	12618621	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr16:12618621C>T	uc002dby.3	+	13	1142	c.1086C>T	c.(1084-1086)AAC>AAT	p.N362N		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	362	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1						GCGTCATGAACAAAGTCATCC	0.522000													37	57					0	0	0.00375469	0	0
GP1BA	2811	broad.mit.edu	37	17	4837738	4837738	+	Silent	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr17:4837738A>G	uc010vsq.1	+	3	1875	c.1800A>G	c.(1798-1800)GTA>GTG	p.V600V	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	613											0						TCCTGTGGGTACGGCCTAATG	0.627000											OREG0024109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	82					0	0	0.00361006	0	0
ODF4	146852	broad.mit.edu	37	17	8243446	8243446	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr17:8243446A>G	uc002gle.1	+	1	259	c.77A>G	c.(76-78)GAA>GGA	p.E26G		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	26					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						CCTGGAAAGGAAAGGAAGAGT	0.552000													3	57					0	0	0.00024832	0	0
FAM83G	644815	broad.mit.edu	37	17	18881233	18881233	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr17:18881233T>A	uc002guw.2	-	5	1913	c.1746A>T	c.(1744-1746)GAA>GAT	p.E582D	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	582										ovary(1)|central_nervous_system(1)	2						CGTCATCATCTTCTTCTTCCA	0.657000													37	73					0	0	0.00111076	0	0
CDK5R1	8851	broad.mit.edu	37	17	30815101	30815101	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr17:30815101C>T	uc002hhn.2	+	2	684	c.463C>T	c.(463-465)CTG>TTG	p.L155L	CDK5R1_uc010wca.1_Silent_p.L155L|CDK5R1_uc010ctc.2_5'UTR	NM_003885	NP_003876	Q15078	CD5R1_HUMAN	cyclin-dependent kinase 5, regulatory subunit 1	155					axon guidance|axonal fasciculation|brain development|cell proliferation|embryo development|ionotropic glutamate receptor signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of transcription, DNA-dependent|neuron cell-cell adhesion|neuron migration|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of neuron apoptosis|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation	axon|contractile fiber|cyclin-dependent protein kinase 5 holoenzyme complex|cytosol|dendritic spine|growth cone|neuromuscular junction|neuronal cell body|perinuclear region of cytoplasm|plasma membrane	cadherin binding|calcium ion binding|protein kinase binding			ovary(1)	1		Breast(31;0.159)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.0938)			GCTTCGCTGCCTGGGTGAGTT	0.667000													23	37					0	0	0.00278032	0	0
ZNF700	90592	broad.mit.edu	37	19	12060395	12060395	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr19:12060395C>G	uc002msu.2	+	4	1682	c.1556C>G	c.(1555-1557)TCT>TGT	p.S519C	ZNF700_uc010xme.1_Missense_Mutation_p.S537C|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	519	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGCTTTTATTCTGCCAAGTCA	0.383000													28	29					0	0	0.000878237	0	0
ZNF99	7652	broad.mit.edu	37	19	22940022	22940022	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr19:22940022C>G	uc010xrh.1	-	6	2309	c.2309G>C	c.(2308-2310)GGG>GCG	p.G770A		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGGTTTCTTCCCAGTATAAAT	0.373000													3	71					0	0	6.4e-05	0	0
IL4I1	259307	broad.mit.edu	37	19	50393785	50393785	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr19:50393785C>T	uc002pqt.1	-	8	924	c.846G>A	c.(844-846)CTG>CTA	p.L282L	IL4I1_uc002pqv.1_Silent_p.L291L|IL4I1_uc010eno.1_Silent_p.L290L|IL4I1_uc002pqw.1_Silent_p.L290L|IL4I1_uc002pqu.1_Silent_p.L304L	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	282						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		GCGCGTTCAACAGCACAAGCC	0.711000											OREG0025629	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	21					0	0	0.000958276	0	0
ZNF615	284370	broad.mit.edu	37	19	52496292	52496292	+	Silent	SNP	C	A	A	rs146634089		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr19:52496292C>A	uc002pye.1	-	6	2329	c.2037G>T	c.(2035-2037)CCG>CCT	p.P679P	ZNF615_uc002pyf.1_Silent_p.P690P|ZNF615_uc002pyg.1_Silent_p.P571P|ZNF615_uc002pyh.1_Silent_p.P690P|ZNF615_uc010epi.1_Silent_p.P686P|ZNF615_uc010ydg.1_Silent_p.P684P	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	679					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TGCATTTGTACGGTTTCTCTC	0.408000													73	103					2.94884e-30	2.66152e-29	0.00361006	1	0
TRIM28	10155	broad.mit.edu	37	19	59057198	59057198	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr19:59057198G>A	uc002qtg.1	+	3	810	c.521G>A	c.(520-522)TGT>TAT	p.C174Y	TRIM28_uc010eut.1_Intron|TRIM28_uc002qth.1_5'Flank	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	174	RBCC domain.|B box-type 1; atypical.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GAGCCTCTGTGTGAGACCTGT	0.577000													31	49					0	0	0.0024448	0	0
ACTG2	72	broad.mit.edu	37	2	74128513	74128513	+	Silent	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr2:74128513T>C	uc002sjw.2	+	2	197	c.75T>C	c.(73-75)GAT>GAC	p.D25D	ACTG2_uc010fex.1_Silent_p.D25D|ACTG2_uc010fey.2_Silent_p.D25D|ACTG2_uc010yrn.1_Silent_p.D25D	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	25					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TCGCAGGAGATGATGCCCCCC	0.622000													28	54					0	0	0.001512	0	0
SULT1C4	27233	broad.mit.edu	37	2	108994906	108994906	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr2:108994906T>C	uc002tea.1	+	1	486	c.113T>C	c.(112-114)ATC>ACC	p.I38T	SULT1C4_uc002tdz.2_Missense_Mutation_p.I38T|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.I38T	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	38					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TGGGATAAGATCTGGAACTTC	0.473000													111	143					0	0	0.00361006	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654232	46654232	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr22:46654232A>T	uc003bhh.2	-	1	4988	c.4988T>A	c.(4987-4989)ATG>AAG	p.M1663K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1663	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ATGCATACGCATTCCATCCAA	0.418000													38	55					0	0	0.00111076	0	0
SSR3	6747	broad.mit.edu	37	3	156266708	156266708	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr3:156266708C>A	uc003fau.2	-	3	402	c.345G>T	c.(343-345)AAG>AAT	p.K115N	SSR3_uc011bop.1_Missense_Mutation_p.K115N	NM_007107	NP_009038	Q9UNL2	SSRG_HUMAN	signal sequence receptor gamma subunit	115	Lumenal (Potential).				cotranslational protein targeting to membrane	integral to endoplasmic reticulum membrane|microsome|Sec61 translocon complex	protein binding|signal sequence binding				0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CATCTTTCTCCTTCCGAGACA	0.363000													24	73					6.44725e-10	5.40341e-09	0.00229938	1	0
HELQ	113510	broad.mit.edu	37	4	84342848	84342848	+	Silent	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr4:84342848A>G	uc003hom.2	-	15	2996	c.2817T>C	c.(2815-2817)TTT>TTC	p.F939F	HELQ_uc010ikb.2_Silent_p.F872F|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	939							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						TATAAAGAACAAAAGACAGAT	0.343000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					22	23					0	0	0.00229938	0	0
BHMT	635	broad.mit.edu	37	5	78415091	78415091	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr5:78415091T>C	uc003kfu.3	+	3	281	c.176T>C	c.(175-177)CTT>CCT	p.L59P	BHMT_uc011cti.1_Intron	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	59	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	GTTCGCCAGCTTCATCGAGAG	0.438000													33	57					0	0	0.00111076	0	0
PGGT1B	5229	broad.mit.edu	37	5	114573574	114573574	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr5:114573574G>A	uc003kqw.3	-	4	481	c.460C>T	c.(460-462)CTT>TTT	p.L154F	PGGT1B_uc003kqx.3_Missense_Mutation_p.L31F|PGGT1B_uc010jch.2_Missense_Mutation_p.L154F	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	154	PFTB 1.				protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	TCCAGCTGAAGGGCTCTCAAG	0.383000													55	83					0	0	0.00361006	0	0
WDR55	54853	broad.mit.edu	37	5	140049032	140049032	+	Silent	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr5:140049032T>C	uc003lgr.3	+	7	1059	c.945T>C	c.(943-945)CAT>CAC	p.H315H	WDR55_uc011czl.1_Intron	NM_017706	NP_060176	Q9H6Y2	WDR55_HUMAN	WD repeat domain 55	315	WD 7.				rRNA processing	cytoplasm|nucleolus				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAGTGGCCATGACCAGCGCC	0.632000													16	24					0	0	0.00400662	0	0
FGFR4	2264	broad.mit.edu	37	5	176522539	176522539	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr5:176522539C>T	uc003mfl.2	+	13	1803	c.1636C>T	c.(1636-1638)CTG>TTG	p.L546L	FGFR4_uc003mfm.2_Silent_p.L546L|FGFR4_uc011dfu.1_Silent_p.L478L|FGFR4_uc003mfo.2_Silent_p.L506L	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	546	Protein kinase.|Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	TGCAGGGCCCCTGTACGTGAT	0.716000										TSP Lung(9;0.080)			3	9					0	0	6.4e-05	0	0
REV3L	5980	broad.mit.edu	37	6	111632330	111632330	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr6:111632330A>T	uc003puy.3	-	29	9060	c.8737T>A	c.(8737-8739)TAC>AAC	p.Y2913N	REV3L_uc003pux.3_Missense_Mutation_p.Y2835N|REV3L_uc003puz.3_Missense_Mutation_p.Y2835N|REV3L_uc003pva.1_RNA|REV3L_uc003puw.3_5'Flank	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2913					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		CTTCCTCTGTATTCCTTGGCA	0.408000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					78	154					0	0	0.00361006	0	0
ACTB	60	broad.mit.edu	37	7	5567465	5567465	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr7:5567465A>G	uc003sos.3	-	5	1078	c.1042T>C	c.(1042-1044)TCG>CCG	p.S348P	ACTB_uc003sor.3_Missense_Mutation_p.S226P|ACTB_uc003sot.3_Missense_Mutation_p.S348P|ACTB_uc003soq.3_Missense_Mutation_p.S226P|ACTB_uc010ksy.2_Missense_Mutation_p.S226P	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	348					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		GTGGACAGCGAGGCCAGGATG	0.592000													50	72					0	0	0.00361006	0	0
MET	4233	broad.mit.edu	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	C	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr7:116423474T>C	uc003vij.2	+	19	3936	c.3749T>C	c.(3748-3750)ATG>ACG	p.M1250T	MET_uc010lkh.2_Missense_Mutation_p.M1268T|MET_uc011knj.1_Missense_Mutation_p.M820T	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1250	Protein kinase.|Interaction with RANBP9.|Cytoplasmic (Potential).		M -> T (in RCCP; somatic mutation).|M -> I (in HCC).		axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.M1268T(4)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTGAAGTGGATGGCTTTGGAA	0.393000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				23	28					0	0	0.00229938	0	0
TOPORS	10210	broad.mit.edu	37	9	32543270	32543270	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr9:32543270T>C	uc003zrb.2	-	3	1420	c.1253A>G	c.(1252-1254)GAT>GGT	p.D418G	TOPORS_uc003zrc.2_Missense_Mutation_p.D351G	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	418					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		TGGAGTTTCATCATCCCATGG	0.423000													52	69					0	0	0.00361006	0	0
SPTAN1	6709	broad.mit.edu	37	9	131361264	131361264	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr9:131361264G>T	uc004bvl.3	+	26	3655	c.3542G>T	c.(3541-3543)AGG>ATG	p.R1181M	SPTAN1_uc011mbg.1_Missense_Mutation_p.R1161M|SPTAN1_uc011mbh.1_Missense_Mutation_p.R1193M|SPTAN1_uc004bvm.3_Missense_Mutation_p.R1181M|SPTAN1_uc004bvn.3_Missense_Mutation_p.R1161M	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1181					actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ATGATGCCCAGGGTAAGTTTC	0.398000													45	51					2.0833e-19	1.8333e-18	0.00361006	1	0
GPC4	2239	broad.mit.edu	37	X	132458560	132458560	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chrX:132458560G>A	uc004exc.1	-	3	536	c.324C>T	c.(322-324)TTC>TTT	p.F108F	GPC4_uc011mvg.1_Silent_p.F38F	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	108					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GTTCTTTGAAGAATTCTGAAA	0.284000													10	106					0	0	0.000978159	0	0
MCOLN3	55283	broad.mit.edu	37	1	85491894	85491894	+	Silent	SNP	G	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr1:85491894G>C	uc001dkp.2	-	8	999	c.906C>G	c.(904-906)CTC>CTG	p.L302L	MCOLN3_uc001dko.2_5'Flank|MCOLN3_uc001dkq.2_Silent_p.L246L|MCOLN3_uc001dkr.2_Silent_p.L302L|MCOLN3_uc001dks.3_Silent_p.L147L	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	302	Helical; (Potential).					integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		ATCTAATGCAGAGGATTAATG	0.398000													36	59					0	0	0.00148497	0	0
LCE3D	84648	broad.mit.edu	37	1	152552161	152552161	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr1:152552161G>A	uc001fab.2	-	2	309	c.252C>T	c.(250-252)TGC>TGT	p.C84C		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	84					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		AGCCATGGCCGCAGCCAGAGC	0.622000													65	132					0	0	0.00361006	0	0
BCAN	63827	broad.mit.edu	37	1	156615922	156615922	+	Missense_Mutation	SNP	G	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr1:156615922G>C	uc001fpp.2	+	2	412	c.76G>C	c.(76-78)GAA>CAA	p.E26Q	BCAN_uc001fpo.2_Missense_Mutation_p.E26Q	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	26					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGATGTTCTGGAAGGAGACAG	0.602000													3	53					0	0	6.4e-05	0	0
VPS11	55823	broad.mit.edu	37	11	118949934	118949934	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr11:118949934C>A	uc010ryx.1	+	15	2404	c.2362C>A	c.(2362-2364)CAG>AAG	p.Q788K	VPS11_uc010ryy.1_Missense_Mutation_p.Q634K	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	788	Potential.				protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		GCAGATTGCACAGGATGAGCT	0.592000													10	19					0.000978159	0.0086078	0.000978159	1	0
CHD4	1108	broad.mit.edu	37	12	6711561	6711561	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr12:6711561C>G	uc001qpo.2	-	3	367	c.203G>C	c.(202-204)AGC>ACC	p.S68T	CHD4_uc001qpn.2_Missense_Mutation_p.S68T|CHD4_uc001qpp.2_Missense_Mutation_p.S65T	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	68					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTGGCGCTTGCTCTTAGGGAT	0.478000													103	222					0	0	0.00361006	0	0
LNX2	222484	broad.mit.edu	37	13	28143269	28143269	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr13:28143269G>A	uc001url.3	-	3	861	c.552C>T	c.(550-552)GGC>GGT	p.G184G	LNX2_uc001urm.1_Silent_p.G184G	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	184							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		CAGGCACTGCGCCTGTCCCCA	0.532000													91	184					0	0	0.00361006	0	0
KLHL1	57626	broad.mit.edu	37	13	70549759	70549759	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr13:70549759C>G	uc001vip.2	-	2	1467	c.673G>C	c.(673-675)GCA>CCA	p.A225P	KLHL1_uc010thm.1_Intron	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	225	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TACCTATGTGCAGGTATCTTT	0.403000													40	87					0	0	0.00285205	0	0
UBE3A	7337	broad.mit.edu	37	15	25616649	25616649	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr15:25616649T>A	uc001zaq.2	-	4	681	c.681A>T	c.(679-681)TTA>TTT	p.L227F	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.L204F|UBE3A_uc001zas.2_Missense_Mutation_p.L224F|UBE3A_uc001zat.2_Missense_Mutation_p.L204F	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	227					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		CATCAGGGCCTAATTTTTGCA	0.418000													63	130					0	0	0.00361006	0	0
CCDC78	124093	broad.mit.edu	37	16	775528	775528	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr16:775528G>T	uc002cjg.2	-	4	426	c.320C>A	c.(319-321)ACC>AAC	p.T107N	CCDC78_uc002cjf.2_5'Flank|CCDC78_uc002cji.3_Missense_Mutation_p.T181N|CCDC78_uc002cjj.3_Intron|CCDC78_uc002cjh.2_5'UTR|CCDC78_uc010uuo.1_Missense_Mutation_p.T107N|CCDC78_uc002cjk.2_Missense_Mutation_p.T107N|HAGHL_uc002cjl.1_5'Flank|HAGHL_uc002cjm.1_5'Flank|HAGHL_uc002cjn.1_5'Flank|HAGHL_uc002cjo.1_5'Flank|HAGHL_uc010uup.1_5'Flank	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78	107										central_nervous_system(1)	1		Hepatocellular(780;0.0218)				GCCCTGGCTGGTGCCATCTCC	0.652000													18	36					6.49762e-13	6.01885e-12	0.00074312	1	0
SNX29	92017	broad.mit.edu	37	16	12618621	12618621	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr16:12618621C>T	uc002dby.3	+	13	1142	c.1086C>T	c.(1084-1086)AAC>AAT	p.N362N		NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	362	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1						GCGTCATGAACAAAGTCATCC	0.522000													37	57					0	0	0.00375469	0	0
GP1BA	2811	broad.mit.edu	37	17	4837738	4837738	+	Silent	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr17:4837738A>G	uc010vsq.1	+	3	1875	c.1800A>G	c.(1798-1800)GTA>GTG	p.V600V	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	613											0						TCCTGTGGGTACGGCCTAATG	0.627000											OREG0024109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	82					0	0	0.00361006	0	0
ODF4	146852	broad.mit.edu	37	17	8243446	8243446	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr17:8243446A>G	uc002gle.1	+	1	259	c.77A>G	c.(76-78)GAA>GGA	p.E26G		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	26					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						CCTGGAAAGGAAAGGAAGAGT	0.552000													3	57					0	0	0.00024832	0	0
FAM83G	644815	broad.mit.edu	37	17	18881233	18881233	+	Missense_Mutation	SNP	T	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr17:18881233T>A	uc002guw.2	-	5	1913	c.1746A>T	c.(1744-1746)GAA>GAT	p.E582D	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	582										ovary(1)|central_nervous_system(1)	2						CGTCATCATCTTCTTCTTCCA	0.657000													37	73					0	0	0.00111076	0	0
CDK5R1	8851	broad.mit.edu	37	17	30815101	30815101	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr17:30815101C>T	uc002hhn.2	+	2	684	c.463C>T	c.(463-465)CTG>TTG	p.L155L	CDK5R1_uc010wca.1_Silent_p.L155L|CDK5R1_uc010ctc.2_5'UTR	NM_003885	NP_003876	Q15078	CD5R1_HUMAN	cyclin-dependent kinase 5, regulatory subunit 1	155					axon guidance|axonal fasciculation|brain development|cell proliferation|embryo development|ionotropic glutamate receptor signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of transcription, DNA-dependent|neuron cell-cell adhesion|neuron migration|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of neuron apoptosis|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation	axon|contractile fiber|cyclin-dependent protein kinase 5 holoenzyme complex|cytosol|dendritic spine|growth cone|neuromuscular junction|neuronal cell body|perinuclear region of cytoplasm|plasma membrane	cadherin binding|calcium ion binding|protein kinase binding			ovary(1)	1		Breast(31;0.159)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.0938)			GCTTCGCTGCCTGGGTGAGTT	0.667000													23	37					0	0	0.00278032	0	0
ZNF700	90592	broad.mit.edu	37	19	12060395	12060395	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr19:12060395C>G	uc002msu.2	+	4	1682	c.1556C>G	c.(1555-1557)TCT>TGT	p.S519C	ZNF700_uc010xme.1_Missense_Mutation_p.S537C|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	519	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGCTTTTATTCTGCCAAGTCA	0.383000													28	29					0	0	0.000878237	0	0
ZNF99	7652	broad.mit.edu	37	19	22940022	22940022	+	Missense_Mutation	SNP	C	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr19:22940022C>G	uc010xrh.1	-	6	2309	c.2309G>C	c.(2308-2310)GGG>GCG	p.G770A		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGGTTTCTTCCCAGTATAAAT	0.373000													3	71					0	0	6.4e-05	0	0
IL4I1	259307	broad.mit.edu	37	19	50393785	50393785	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr19:50393785C>T	uc002pqt.1	-	8	924	c.846G>A	c.(844-846)CTG>CTA	p.L282L	IL4I1_uc002pqv.1_Silent_p.L291L|IL4I1_uc010eno.1_Silent_p.L290L|IL4I1_uc002pqw.1_Silent_p.L290L|IL4I1_uc002pqu.1_Silent_p.L304L	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	282						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		GCGCGTTCAACAGCACAAGCC	0.711000											OREG0025629	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	21					0	0	0.000958276	0	0
ZNF615	284370	broad.mit.edu	37	19	52496292	52496292	+	Silent	SNP	C	A	A	rs146634089		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr19:52496292C>A	uc002pye.1	-	6	2329	c.2037G>T	c.(2035-2037)CCG>CCT	p.P679P	ZNF615_uc002pyf.1_Silent_p.P690P|ZNF615_uc002pyg.1_Silent_p.P571P|ZNF615_uc002pyh.1_Silent_p.P690P|ZNF615_uc010epi.1_Silent_p.P686P|ZNF615_uc010ydg.1_Silent_p.P684P	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	679					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TGCATTTGTACGGTTTCTCTC	0.408000													73	103					2.94884e-30	2.88331e-29	0.00361006	1	0
TRIM28	10155	broad.mit.edu	37	19	59057198	59057198	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr19:59057198G>A	uc002qtg.1	+	3	810	c.521G>A	c.(520-522)TGT>TAT	p.C174Y	TRIM28_uc010eut.1_Intron|TRIM28_uc002qth.1_5'Flank	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	174	RBCC domain.|B box-type 1; atypical.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GAGCCTCTGTGTGAGACCTGT	0.577000													31	49					0	0	0.0024448	0	0
ACTG2	72	broad.mit.edu	37	2	74128513	74128513	+	Silent	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr2:74128513T>C	uc002sjw.2	+	2	197	c.75T>C	c.(73-75)GAT>GAC	p.D25D	ACTG2_uc010fex.1_Silent_p.D25D|ACTG2_uc010fey.2_Silent_p.D25D|ACTG2_uc010yrn.1_Silent_p.D25D	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	25					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TCGCAGGAGATGATGCCCCCC	0.622000													28	54					0	0	0.001512	0	0
SULT1C4	27233	broad.mit.edu	37	2	108994906	108994906	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr2:108994906T>C	uc002tea.1	+	1	486	c.113T>C	c.(112-114)ATC>ACC	p.I38T	SULT1C4_uc002tdz.2_Missense_Mutation_p.I38T|SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.I38T	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	38					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TGGGATAAGATCTGGAACTTC	0.473000													111	143					0	0	0.00361006	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692296	31692296	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr21:31692296G>A	uc002ynw.2	-	1	312	c.58C>T	c.(58-60)CGC>TGC	p.R20C		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	20						intermediate filament				ovary(1)	1						GGAATATGGCGGGAGGTTCTG	0.532000													5	57					0	0	0.000602214	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654232	46654232	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr22:46654232A>T	uc003bhh.2	-	1	4988	c.4988T>A	c.(4987-4989)ATG>AAG	p.M1663K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1663	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ATGCATACGCATTCCATCCAA	0.418000													38	55					0	0	0.00111076	0	0
SSR3	6747	broad.mit.edu	37	3	156266708	156266708	+	Missense_Mutation	SNP	C	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr3:156266708C>A	uc003fau.2	-	3	402	c.345G>T	c.(343-345)AAG>AAT	p.K115N	SSR3_uc011bop.1_Missense_Mutation_p.K115N	NM_007107	NP_009038	Q9UNL2	SSRG_HUMAN	signal sequence receptor gamma subunit	115	Lumenal (Potential).				cotranslational protein targeting to membrane	integral to endoplasmic reticulum membrane|microsome|Sec61 translocon complex	protein binding|signal sequence binding				0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CATCTTTCTCCTTCCGAGACA	0.363000													24	73					6.44725e-10	5.81906e-09	0.00229938	1	0
HELQ	113510	broad.mit.edu	37	4	84342848	84342848	+	Silent	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr4:84342848A>G	uc003hom.2	-	15	2996	c.2817T>C	c.(2815-2817)TTT>TTC	p.F939F	HELQ_uc010ikb.2_Silent_p.F872F|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	939							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						TATAAAGAACAAAAGACAGAT	0.343000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					22	23					0	0	0.00229938	0	0
BHMT	635	broad.mit.edu	37	5	78415091	78415091	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr5:78415091T>C	uc003kfu.3	+	3	281	c.176T>C	c.(175-177)CTT>CCT	p.L59P	BHMT_uc011cti.1_Intron	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	59	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	GTTCGCCAGCTTCATCGAGAG	0.438000													33	57					0	0	0.00111076	0	0
PGGT1B	5229	broad.mit.edu	37	5	114573574	114573574	+	Missense_Mutation	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr5:114573574G>A	uc003kqw.3	-	4	481	c.460C>T	c.(460-462)CTT>TTT	p.L154F	PGGT1B_uc003kqx.3_Missense_Mutation_p.L31F|PGGT1B_uc010jch.2_Missense_Mutation_p.L154F	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	154	PFTB 1.				protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	TCCAGCTGAAGGGCTCTCAAG	0.383000													55	83					0	0	0.00361006	0	0
WDR55	54853	broad.mit.edu	37	5	140049032	140049032	+	Silent	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr5:140049032T>C	uc003lgr.3	+	7	1059	c.945T>C	c.(943-945)CAT>CAC	p.H315H	WDR55_uc011czl.1_Intron	NM_017706	NP_060176	Q9H6Y2	WDR55_HUMAN	WD repeat domain 55	315	WD 7.				rRNA processing	cytoplasm|nucleolus				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTAGTGGCCATGACCAGCGCC	0.632000													16	24					0	0	0.00400662	0	0
FGFR4	2264	broad.mit.edu	37	5	176522539	176522539	+	Silent	SNP	C	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr5:176522539C>T	uc003mfl.2	+	13	1803	c.1636C>T	c.(1636-1638)CTG>TTG	p.L546L	FGFR4_uc003mfm.2_Silent_p.L546L|FGFR4_uc011dfu.1_Silent_p.L478L|FGFR4_uc003mfo.2_Silent_p.L506L	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	546	Protein kinase.|Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	TGCAGGGCCCCTGTACGTGAT	0.716000										TSP Lung(9;0.080)			3	9					0	0	6.4e-05	0	0
REV3L	5980	broad.mit.edu	37	6	111632330	111632330	+	Missense_Mutation	SNP	A	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr6:111632330A>T	uc003puy.3	-	29	9060	c.8737T>A	c.(8737-8739)TAC>AAC	p.Y2913N	REV3L_uc003pux.3_Missense_Mutation_p.Y2835N|REV3L_uc003puz.3_Missense_Mutation_p.Y2835N|REV3L_uc003pva.1_RNA|REV3L_uc003puw.3_5'Flank	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2913					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		CTTCCTCTGTATTCCTTGGCA	0.408000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					78	154					0	0	0.00361006	0	0
ACTB	60	broad.mit.edu	37	7	5567465	5567465	+	Missense_Mutation	SNP	A	G	G			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr7:5567465A>G	uc003sos.3	-	5	1078	c.1042T>C	c.(1042-1044)TCG>CCG	p.S348P	ACTB_uc003sor.3_Missense_Mutation_p.S226P|ACTB_uc003sot.3_Missense_Mutation_p.S348P|ACTB_uc003soq.3_Missense_Mutation_p.S226P|ACTB_uc010ksy.2_Missense_Mutation_p.S226P	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	348					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		GTGGACAGCGAGGCCAGGATG	0.592000													50	72					0	0	0.00361006	0	0
MET	4233	broad.mit.edu	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	C	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr7:116423474T>C	uc003vij.2	+	19	3936	c.3749T>C	c.(3748-3750)ATG>ACG	p.M1250T	MET_uc010lkh.2_Missense_Mutation_p.M1268T|MET_uc011knj.1_Missense_Mutation_p.M820T	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1250	Protein kinase.|Interaction with RANBP9.|Cytoplasmic (Potential).		M -> T (in RCCP; somatic mutation).|M -> I (in HCC).		axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.M1268T(4)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTGAAGTGGATGGCTTTGGAA	0.393000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				23	28					0	0	0.00229938	0	0
TOPORS	10210	broad.mit.edu	37	9	32543270	32543270	+	Missense_Mutation	SNP	T	C	C			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr9:32543270T>C	uc003zrb.2	-	3	1420	c.1253A>G	c.(1252-1254)GAT>GGT	p.D418G	TOPORS_uc003zrc.2_Missense_Mutation_p.D351G	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	418					DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		TGGAGTTTCATCATCCCATGG	0.423000													52	69					0	0	0.00361006	0	0
SPTAN1	6709	broad.mit.edu	37	9	131361264	131361264	+	Missense_Mutation	SNP	G	T	T			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr9:131361264G>T	uc004bvl.3	+	26	3655	c.3542G>T	c.(3541-3543)AGG>ATG	p.R1181M	SPTAN1_uc011mbg.1_Missense_Mutation_p.R1161M|SPTAN1_uc011mbh.1_Missense_Mutation_p.R1193M|SPTAN1_uc004bvm.3_Missense_Mutation_p.R1181M|SPTAN1_uc004bvn.3_Missense_Mutation_p.R1161M	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1181					actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ATGATGCCCAGGGTAAGTTTC	0.398000													45	51					2.0833e-19	1.98195e-18	0.00361006	1	0
GPC4	2239	broad.mit.edu	37	X	132458560	132458560	+	Silent	SNP	G	A	A			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chrX:132458560G>A	uc004exc.1	-	3	536	c.324C>T	c.(322-324)TTC>TTT	p.F108F	GPC4_uc011mvg.1_Silent_p.F38F	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	108					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GTTCTTTGAAGAATTCTGAAA	0.284000													10	106					0	0	0.000978159	0	0
SPRED2	200734	broad.mit.edu	37	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr2:65561771delC	uc002sdr.3	-	3	876	c.341delG	c.(340-342)GGAfs	p.G114fs	SPRED2_uc010fcw.2_Frame_Shift_Del_p.G111fs|SPRED2_uc010fcx.1_Intron	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	114	WH1.				inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTTCCTTACTCCCCTGTCAAA	0.413													68	124	---	---	---	---					
LRP2	4036	broad.mit.edu	37	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr2:170145584delA	uc002ues.2	-	9	1207	c.994delT	c.(994-996)TGTfs	p.C332fs	LRP2_uc010zdf.1_Frame_Shift_Del_p.C332fs	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	332	EGF-like 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCTGGGGGACAAAAACACGCT	0.483													41	102	---	---	---	---					
NFE2L3	9603	broad.mit.edu	37	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	g.chr7:26223344_26223347delTTCT	uc003sxq.2	+	3	1046_1049	c.774_777delTTCT	c.(772-777)ACTTCTfs	p.T258fs		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	258_259					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GGACAGATACTTCTTTCTCTCTGG	0.402													39	92	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106405448	106405448	+	RNA	DEL	C	-	-	rs77404616		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr14:106405448delC	uc010tyt.1	-	2359		c.42471delG								Parts of antibodies, mostly variable regions.												0						aaaaaaaaaacaacaaCAGTT	0.259													2	4	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106919168	106919168	+	RNA	DEL	C	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr14:106919168delC	uc010tyt.1	-	245		c.10611delG			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ACGTTAACCTCCCCCTCACTG	0.557													4	5	---	---	---	---					
SPRED2	200734	broad.mit.edu	37	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr2:65561771delC	uc002sdr.3	-	3	876	c.341delG	c.(340-342)GGAfs	p.G114fs	SPRED2_uc010fcw.2_Frame_Shift_Del_p.G111fs|SPRED2_uc010fcx.1_Intron	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	114	WH1.				inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTTCCTTACTCCCCTGTCAAA	0.413													68	124	---	---	---	---					
LRP2	4036	broad.mit.edu	37	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr2:170145584delA	uc002ues.2	-	9	1207	c.994delT	c.(994-996)TGTfs	p.C332fs	LRP2_uc010zdf.1_Frame_Shift_Del_p.C332fs	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	332	EGF-like 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCTGGGGGACAAAAACACGCT	0.483													41	102	---	---	---	---					
GUSBL1	387036	broad.mit.edu	37	6	26856964	26856964	+	RNA	DEL	T	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr6:26856964delT	uc003nim.2	-	4		c.409delA				NR_003504				Homo sapiens glucuronidase, beta-like 1, mRNA (cDNA clone IMAGE:4809612).												0						GGAGATCTGGTAATTCACCAG	0.542													2	4	---	---	---	---					
NFE2L3	9603	broad.mit.edu	37	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	-	-			TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	555a55c5-0299-42ea-b192-fd3595ea0aec	9f300007-0c7a-4c79-a2b9-55a9edf8333b	g.chr7:26223344_26223347delTTCT	uc003sxq.2	+	3	1046_1049	c.774_777delTTCT	c.(772-777)ACTTCTfs	p.T258fs		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	258_259					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GGACAGATACTTCTTTCTCTCTGG	0.402													39	92	---	---	---	---					
