Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf173	127254	broad.mit.edu	37	1	75114999	75114999	+	Silent	SNP	C	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:75114999C>A	uc001dgg.2	-	2	243	c.24G>T	c.(22-24)GGG>GGT	p.G8G		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	8										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CAGCAAGTAACCTAAAATACA	0.353000													23	43					1.22574e-08	1.53869e-08	0.014323	1	0
INTS3	65123	broad.mit.edu	37	1	153736638	153736638	+	Silent	SNP	A	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:153736638A>G	uc009wom.2	+	19	2087	c.1866A>G	c.(1864-1866)CTA>CTG	p.L622L	INTS3_uc001fct.2_Silent_p.L622L|INTS3_uc001fcu.2_Silent_p.L314L|INTS3_uc001fcv.2_Silent_p.L416L|INTS3_uc010peb.1_Silent_p.L416L|INTS3_uc001fcw.2_Silent_p.L135L|INTS3_uc010pec.1_Silent_p.L135L|INTS3_uc001fcy.2_5'Flank|INTS3_uc001fcx.2_5'Flank	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	623					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CTTCCTGCCTACAGGAGCTCT	0.572000													39	49					0	0	0.007835	0	0
DCAF6	55827	broad.mit.edu	37	1	167962583	167962583	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:167962583G>A	uc001gew.2	+	7	1050	c.808G>A	c.(808-810)GTT>ATT	p.V270I	DCAF6_uc001gev.2_Missense_Mutation_p.V270I|DCAF6_uc001gex.2_Missense_Mutation_p.V270I|DCAF6_uc010plk.1_Missense_Mutation_p.V239I|DCAF6_uc001gey.2_Missense_Mutation_p.V123I	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	270	WD 5.				positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGAGATTCTCGTTAGTTACTC	0.408000													11	41					0	0	0.008291	0	0
FAIM3	9214	broad.mit.edu	37	1	207085119	207085119	+	Silent	SNP	G	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:207085119G>C	uc001hey.2	-	4	845	c.666C>G	c.(664-666)CCC>CCG	p.P222P	FAIM3_uc010prz.1_Silent_p.P110P|FAIM3_uc010psa.1_Silent_p.P131P|FAIM3_uc010psb.1_Silent_p.P222P	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	222	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					TGGGCGTCTGGGGCTTGAGCA	0.542000											OREG0014185	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	60					0	0	0.003330	0	0
PIGR	5284	broad.mit.edu	37	1	207105817	207105817	+	Silent	SNP	C	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:207105817C>G	uc001hez.2	-	8	2176	c.1992G>C	c.(1990-1992)CGG>CGC	p.R664R	PIGR_uc009xbz.2_Silent_p.R664R	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	664	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCTTCCTGTGCCGGGCTCTGG	0.647000													28	56					0	0	0.008361	0	0
SF3B2	10992	broad.mit.edu	37	11	65829382	65829382	+	Silent	SNP	C	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr11:65829382C>A	uc001ogy.1	+	16	1930	c.1890C>A	c.(1888-1890)CCC>CCA	p.P630P		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	630					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						AGGTCCCTCCCCCATGGCTGA	0.562000													16	17					1.67942e-08	2.06428e-08	0.006122	1	0
ARAP1	116985	broad.mit.edu	37	11	72406598	72406598	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr11:72406598T>C	uc001osu.2	-	25	3685	c.3496A>G	c.(3496-3498)AGT>GGT	p.S1166G	ARAP1_uc001osv.2_Missense_Mutation_p.S1166G|ARAP1_uc001osr.2_Missense_Mutation_p.S926G|ARAP1_uc001oss.2_Missense_Mutation_p.S921G|ARAP1_uc009yth.2_Missense_Mutation_p.S860G|ARAP1_uc010rre.1_Missense_Mutation_p.S921G	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1166					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						TGGGTCCCACTGGCAGTGCCA	0.647000													12	18					0	0	0.010729	0	0
CAPZA3	93661	broad.mit.edu	37	12	18892035	18892035	+	Missense_Mutation	SNP	T	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr12:18892035T>A	uc001rdy.2	+	1	991	c.833T>A	c.(832-834)CTG>CAG	p.L278Q	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	278					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GACTTGAATCTGGTGATGTAT	0.393000													32	40					0	0	0.010818	0	0
KRT75	9119	broad.mit.edu	37	12	52827640	52827640	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr12:52827640C>T	uc001saj.2	-	1	471	c.449G>A	c.(448-450)CGC>CAC	p.R150H		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	150	Coil 1A.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GATCTGCTCGCGCTCCTCGGC	0.562000													52	77					0	0	0.014410	0	0
MLXIP	22877	broad.mit.edu	37	12	122616846	122616846	+	Silent	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr12:122616846C>T	uc001ubq.2	+	8	1008	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	MLXIP_uc001ubr.2_Silent_p.F87F|MLXIP_uc001ubs.1_Intron|MLXIP_uc001ubt.2_5'Flank	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	336	Transactivation domain.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CAGACCTCTTCTCTTCTAGCC	0.468000													8	8					0	0	0.003080	0	0
MTUS2	23281	broad.mit.edu	37	13	29600351	29600351	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr13:29600351G>A	uc001usl.3	+	1	1604	c.1546G>A	c.(1546-1548)GTT>ATT	p.V516I		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	506						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CACCACATCTGTTGCTGAAAA	0.507000													22	30					0	0	0.010504	0	0
NBEA	26960	broad.mit.edu	37	13	35733740	35733740	+	Silent	SNP	A	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr13:35733740A>C	uc001uvb.2	+	23	3638	c.3432A>C	c.(3430-3432)ACA>ACC	p.T1144T	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1144						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATAGTAGTACATCATTTCTCT	0.333000													5	24					0	0	0.000602	0	0
TXNDC16	57544	broad.mit.edu	37	14	52907333	52907333	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr14:52907333G>C	uc001wzs.2	-	19	2401	c.1952C>G	c.(1951-1953)ACA>AGA	p.T651R	TXNDC16_uc010tqu.1_Missense_Mutation_p.T646R|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	651					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					CTTTACCAGTGTCAATATTGC	0.308000													3	33					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	28600108	28600108	+	Silent	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr15:28600108C>T	uc010uaf.1	-	3	240	c.222G>A	c.(220-222)GAG>GAA	p.E74E						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		TCACCTCTAGCTCCCTCCTTA	0.512000													8	32					0	0	0.013537	0	0
MORF4L1	10933	broad.mit.edu	37	15	79185887	79185887	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr15:79185887T>C	uc002bel.2	+	10	852	c.664T>C	c.(664-666)TAT>CAT	p.Y222H	MORF4L1_uc002bem.2_Missense_Mutation_p.Y183H|MORF4L1_uc010une.1_Missense_Mutation_p.Y95H	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	222	Sufficient for interaction with PHF12.|Sufficient for interaction with SIN3A.|Interaction with RB1-1.				double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						ATAGCTCTTTTATCTTCCTGC	0.299000													29	55					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	15	102294715	102294715	+	Silent	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr15:102294715C>T	uc010usj.1	+	5	602	c.543C>T	c.(541-543)GAC>GAT	p.D181D	uc002bxo.2_5'Flank|uc002bxq.2_5'Flank|uc002bxr.2_5'Flank|uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank|uc002bys.2_5'Flank|uc002byv.2_5'Flank|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank|uc002bzr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		AGCAGGCAGACCAAGGAGTTC	0.587000													3	9					0	0	0.004672	0	0
RBBP6	5930	broad.mit.edu	37	16	24582258	24582258	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr16:24582258A>C	uc002dmh.2	+	18	4911	c.3871A>C	c.(3871-3873)ACT>CCT	p.T1291P	RBBP6_uc002dmi.2_Missense_Mutation_p.T1257P|RBBP6_uc010bxr.2_Missense_Mutation_p.T451P|RBBP6_uc002dmk.2_Missense_Mutation_p.T1124P	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1291					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TACAAAGCGAACTGTGATTAA	0.333000													21	33					0	0	0.003330	0	0
KIAA0664	23277	broad.mit.edu	37	17	2601830	2601830	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr17:2601830C>T	uc002fuy.1	-	10	1293	c.1207G>A	c.(1207-1209)GGC>AGC	p.G403S	KIAA0664_uc002fux.1_Missense_Mutation_p.G335S	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	403							binding			breast(2)	2						ATCACGTTGCCGTCAATGACG	0.622000													5	12					0	0	0.000602	0	0
NPTX1	4884	broad.mit.edu	37	17	78444656	78444656	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr17:78444656C>A	uc002jyp.1	-	5	1414	c.1256G>T	c.(1255-1257)GGG>GTG	p.G419V		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	419	Pentaxin.				central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			CTTGGTGGCCCCTCCGTAGAT	0.657000													7	49					2.17888e-05	2.52066e-05	0.006214	1	0
ZNF700	90592	broad.mit.edu	37	19	12060128	12060128	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:12060128C>T	uc002msu.2	+	4	1415	c.1289C>T	c.(1288-1290)GCC>GTC	p.A430V	ZNF700_uc010xme.1_Missense_Mutation_p.A448V|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	430	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGATCTGCCTCACAGCTT	0.473000													23	36					0	0	0.012319	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39914552	39914552	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:39914552C>G	uc010xuz.1	+	19	3104	c.2779C>G	c.(2779-2781)CTT>GTT	p.L927V	PLEKHG2_uc010xuy.1_Missense_Mutation_p.L868V|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Missense_Mutation_p.L705V	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	927					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TAAGCAAGACCTTCCGGGCAT	0.577000													29	40					0	0	0.007291	0	0
ZNF45	7596	broad.mit.edu	37	19	44418234	44418234	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:44418234C>T	uc002oxu.1	-	4	1453	c.1354G>A	c.(1354-1356)GGC>AGC	p.G452S	ZNF45_uc002oxw.1_Missense_Mutation_p.G452S|ZNF45_uc002oxv.1_Missense_Mutation_p.G452S	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	452	C2H2-type 11.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGGCTGAAGCCCTTGCCACAC	0.483000													22	41					0	0	0.012319	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969527	47969527	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:47969527C>T	uc002pgx.2	-	2	412	c.134G>A	c.(133-135)GGG>GAG	p.G45E	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.G45E	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	45	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		GCGGTAGGACCCCTGGCAGCC	0.731000													6	2					0	0	0.001984	0	0
ZNF814	730051	broad.mit.edu	37	19	58385762	58385762	+	Silent	SNP	C	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:58385762C>G	uc002qqo.2	-	3	1268	c.996G>C	c.(994-996)TCG>TCC	p.S332S	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	332	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						ATTTGCTAAACGATTTCCCAC	0.358000													4	7					0	0	0.009096	0	0
ZNF606	80095	broad.mit.edu	37	19	58490170	58490170	+	Silent	SNP	A	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr19:58490170A>G	uc002qqw.2	-	7	2496	c.1878T>C	c.(1876-1878)TGT>TGC	p.C626C	ZNF606_uc010yhp.1_Silent_p.C536C	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	626	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		CACATTTATTACATTCATAGG	0.383000													4	102					0	0	0.009096	0	0
PLEKHB2	55041	broad.mit.edu	37	2	131897791	131897791	+	Missense_Mutation	SNP	G	C	C	rs143964327		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr2:131897791G>C	uc002tsg.3	+	7	1035	c.475G>C	c.(475-477)GTT>CTT	p.V159L	PLEKHB2_uc002tsh.2_Intron|PLEKHB2_uc002tsj.3_Missense_Mutation_p.V158L|PLEKHB2_uc002tsf.3_Missense_Mutation_p.V167L|PLEKHB2_uc010zao.1_Missense_Mutation_p.V109L|PLEKHB2_uc010zap.1_Intron|PLEKHB2_uc010zaq.1_Missense_Mutation_p.K114N|PLEKHB2_uc002tsi.3_Missense_Mutation_p.V200L	NM_001100623	NP_001094093	Q96CS7	PKHB2_HUMAN	pleckstrin homology domain containing, family B	159						membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.0828)		AGGAACTCAAGTTGTCTACGC	0.512000													14	24					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179567316	179567316	+	Nonsense_Mutation	SNP	C	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr2:179567316C>A	uc010zfg.1	-	104	26790	c.26566G>T	c.(26566-26568)GAA>TAA	p.E8856*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E5517*|TTN_uc010fre.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9783							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGACACTTCACACTCAAAG	0.438000													41	41					9.62906e-15	1.23503e-14	0.006230	1	0
HSPE1	3336	broad.mit.edu	37	2	198365946	198365946	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr2:198365946C>G	uc002uul.2	+	2	592	c.152C>G	c.(151-153)TCG>TGG	p.S51W	HSPD1_uc002uui.2_5'Flank|HSPD1_uc002uuj.2_5'Flank|HSPD1_uc010zgx.1_5'Flank|HSPD1_uc010fsm.2_5'Flank|HSPD1_uc002uuk.2_5'Flank|HSPD1_uc010zgy.1_5'Flank	NM_002157	NP_002148	P61604	CH10_HUMAN	heat shock 10kDa protein 1	51					activation of caspase activity|protein folding|response to unfolded protein	mitochondrial matrix	ATP binding|chaperone binding|unfolded protein binding				0			Epithelial(96;0.225)			GCTGTTGGATCGGGTTCTAAA	0.408000													9	11					0	0	0.004482	0	0
NAPB	63908	broad.mit.edu	37	20	23370612	23370612	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr20:23370612A>G	uc002wta.2	-	7	649	c.532T>C	c.(532-534)TAC>CAC	p.Y178H	NAPB_uc002wtc.2_Missense_Mutation_p.Y84H|NAPB_uc002wtb.2_Missense_Mutation_p.Y182H|NAPB_uc002wtd.3_RNA|NAPB_uc010zss.1_Missense_Mutation_p.Y65H|NAPB_uc010zst.1_Missense_Mutation_p.Y139H	NM_022080	NP_071363	Q9H115	SNAB_HUMAN	N-ethylmaleimide-sensitive factor attachment	178					intracellular protein transport|vesicle-mediated transport	membrane				ovary(1)	1	Lung NSC(19;0.0646)|Colorectal(13;0.0993)|all_lung(19;0.143)					GCTTTCTGGTACTGCTCAAGC	0.398000													41	53					0	0	0.014410	0	0
RIPK4	54101	broad.mit.edu	37	21	43161570	43161570	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr21:43161570C>A	uc002yzn.1	-	8	1831	c.1783G>T	c.(1783-1785)GTG>TTG	p.V595L		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	595						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						TTCACACTCACCCCCGGCTGC	0.682000													25	57					1.5548e-18	2.03852e-18	0.005443	1	0
CCT8L2	150160	broad.mit.edu	37	22	17073382	17073382	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr22:17073382C>T	uc002zlp.1	-	1	319	c.59G>A	c.(58-60)AGG>AAG	p.R20K		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	20					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CGGGCTCTCCCTTGGGTTCAG	0.657000													21	5					0	0	0.014323	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58179114	58179114	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr3:58179114T>C	uc003djo.1	-	7	854	c.757A>G	c.(757-759)AGT>GGT	p.S253G	DNASE1L3_uc011bfd.1_Missense_Mutation_p.S223G|DNASE1L3_uc003djp.1_Missense_Mutation_p.S253G|DNASE1L3_uc003djq.1_Missense_Mutation_p.S253G	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	253					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		TCAAAAACACTGTTTGACTTG	0.418000													15	30					0	0	0.006122	0	0
LOC729375	729375	broad.mit.edu	37	3	129822591	129822591	+	RNA	SNP	A	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr3:129822591A>G	uc003ene.2	-	1		c.130T>C			LOC729375_uc011ble.1_Intron					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						TACCTGCTGTAATGACAACAT	0.587000													8	10					0	0	0.004482	0	0
HERC3	8916	broad.mit.edu	37	4	89575198	89575198	+	Nonsense_Mutation	SNP	G	T	T	rs35418561		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr4:89575198G>T	uc003hrw.1	+	7	857	c.691G>T	c.(691-693)GAA>TAA	p.E231*	HERC3_uc003hrv.2_Nonsense_Mutation_p.E231*|HERC3_uc011cdn.1_Nonsense_Mutation_p.E113*	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	231	RCC1 5.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TCTAGATCGAGAATCTCCATG	0.338000													22	10					4.4004e-07	5.29844e-07	0.003330	1	0
MYOZ3	91977	broad.mit.edu	37	5	150050078	150050078	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr5:150050078G>A	uc003lss.2	+	3	681	c.94G>A	c.(94-96)GTG>ATG	p.V32M	MYOZ3_uc003lsr.2_Missense_Mutation_p.V32M	NM_001122853	NP_001116325	Q8TDC0	MYOZ3_HUMAN	myozenin 3	32						sarcomere	protein binding			skin(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAGCTGAGCGTGCCCCAGGA	0.612000													15	7					0	0	0.003163	0	0
KCNK5	8645	broad.mit.edu	37	6	39159334	39159334	+	Nonsense_Mutation	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr6:39159334G>A	uc003oon.2	-	5	1196	c.832C>T	c.(832-834)CAG>TAG	p.Q278*		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	278	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CCCTTCACCTGCAGGGCCTTC	0.547000													47	97					0	0	0.010771	0	0
C6orf150	115004	broad.mit.edu	37	6	74135070	74135070	+	Silent	SNP	A	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr6:74135070A>G	uc003pgx.1	-	5	1588	c.1449T>C	c.(1447-1449)TAT>TAC	p.Y483Y		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	483											0						CAGGAATAAAATAATTCTCAA	0.373000													17	19					0	0	0.004007	0	0
DNAH11	8701	broad.mit.edu	37	7	21630624	21630624	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr7:21630624G>A	uc003svc.2	+	13	2289	c.2258G>A	c.(2257-2259)AGG>AAG	p.R753K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	753	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTCAAGAAAAGGAACACTATT	0.259000									Kartagener_syndrome				5	2					0	0	0.001168	0	0
C7orf58	79974	broad.mit.edu	37	7	120629777	120629777	+	Silent	SNP	C	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr7:120629777C>G	uc003vjq.3	+	2	549	c.102C>G	c.(100-102)ACC>ACG	p.T34T	C7orf58_uc003vjr.1_Silent_p.T34T|C7orf58_uc003vjs.3_Silent_p.T34T	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	34						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AGACTCTGACCCTCCGAGGGT	0.587000													36	47					0	0	0.013726	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121679512	121679512	+	Missense_Mutation	SNP	A	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr7:121679512A>T	uc003vjy.2	+	20	5902	c.5507A>T	c.(5506-5508)AAA>ATA	p.K1836I	PTPRZ1_uc003vjz.2_Missense_Mutation_p.K969I|PTPRZ1_uc011knt.1_Missense_Mutation_p.K426I	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1836	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TTGCAGAGAAAATGTGATCAG	0.423000													30	25					0	0	0.012213	0	0
Unknown	0	broad.mit.edu	37	9	68413570	68413570	+	RNA	SNP	G	A	A			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr9:68413570G>A	uc004aex.2	+	1		c.125G>A								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		CCCCAGTGGCGCCGGATCTAG	0.562000													3	7					0	0	0.009096	0	0
SHROOM2	357	broad.mit.edu	37	X	9863548	9863548	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chrX:9863548C>T	uc004csu.1	+	4	1690	c.1600C>T	c.(1600-1602)CGG>TGG	p.R534W		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	534					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				CGAGACAGGACGGTGTTACCC	0.692000													6	8					0	0	0.001168	0	0
MCF2	4168	broad.mit.edu	37	X	138684576	138684576	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chrX:138684576C>T	uc004fau.2	-	16	2119	c.1825G>A	c.(1825-1827)GCA>ACA	p.A609T	MCF2_uc004fav.2_Missense_Mutation_p.A625T|MCF2_uc011mwl.1_Missense_Mutation_p.A586T|MCF2_uc010nsh.1_Missense_Mutation_p.A609T|MCF2_uc011mwm.1_Missense_Mutation_p.A570T|MCF2_uc011mwn.1_Missense_Mutation_p.A754T|MCF2_uc004faw.2_Missense_Mutation_p.A669T|MCF2_uc011mwo.1_Missense_Mutation_p.A685T	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	609	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TGGAAAAATGCGCATTCTGAA	0.294000													57	122					0	0	0.014410	0	0
PCSK9	255738	broad.mit.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	CTG	CTG	rs67610340		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr1:55505552_55505553insCTG	uc001cyf.1	+	1	333_334	c.42_43insCTG	c.(40-45)insCTG	p.23_24insL	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_5'Flank	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	23_24					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						Ggccgctgccactgctgctgct	0.574													3	3	---	---	---	---					
FLYWCH2	114984	broad.mit.edu	37	16	2946454	2946456	+	In_Frame_Del	DEL	CCC	-	-			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr16:2946454_2946456delCCC	uc002csa.2	+	3	375_377	c.4_6delCCC	c.(4-6)CCCdel	p.P2del	FLYWCH2_uc010uwj.1_In_Frame_Del_p.P2del|FLYWCH2_uc010uwk.1_In_Frame_Del_p.P2del	NM_138439	NP_612448	Q96CP2	FWCH2_HUMAN	FLYWCH family member 2	2											0						TCCCGGGATGCCCCTGCCCGAGC	0.670													11	18	---	---	---	---					
HLA-DPB1	3115	broad.mit.edu	37	6	33048613	33048613	+	Frame_Shift_Del	DEL	A	-	-	rs41550319		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr6:33048613delA	uc003ocu.1	+	2	324	c.265delA	c.(265-267)AACfs	p.N89fs	HLA-DPA1_uc003oct.1_5'Flank|HLA-DPB1_uc011dqn.1_RNA|HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Frame_Shift_Del_p.N88fs|HLA-DPB1_uc011dqq.1_5'UTR	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	89	Extracellular (Potential).|Beta-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						GGAGTACTGGAACAGCCAGAA	0.657													12	44	---	---	---	---					
AIM1	202	broad.mit.edu	37	6	106960616	106960616	+	Frame_Shift_Del	DEL	C	-	-			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr6:106960616delC	uc003prh.2	+	1	887	c.400delC	c.(400-402)CCCfs	p.P134fs		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	134							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		GGAGTCCCCACCCAAGAGGGT	0.617													3	6	---	---	---	---					
C7orf59	389541	broad.mit.edu	37	7	99746597	99746598	+	Frame_Shift_Ins	INS	-	G	G			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chr7:99746597_99746598insG	uc003utq.2	+	1	68_69	c.2_3insG	c.(1-3)ATGfs	p.M1fs		NM_001008395	NP_001008396	Q0VGL1	CG059_HUMAN	hypothetical protein LOC389541	1											0						AAGACTGCGATGGTGAGTGAGG	0.658													23	61	---	---	---	---					
TRPC5	7224	broad.mit.edu	37	X	111090414	111090416	+	In_Frame_Del	DEL	TCA	-	-			TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	g.chrX:111090414_111090416delTCA	uc004epl.1	-	6	2545_2547	c.1626_1628delTGA	c.(1624-1629)TATGAA>TAA	p.542_543YE>*	TRPC5_uc004epm.1_In_Frame_Del_p.542_543YE>*	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	542_543	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGCTCTGGTTTCATAATAGAAGT	0.433													72	78	---	---	---	---					
