Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7680494	7680494	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7726663	7726663	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	8991675	8991675	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125570743	125570743	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125618604	125618604	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADACL3	126767	broad.mit.edu	37	1	12776415	12776415	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAK1	22848	broad.mit.edu	37	2	69709947	69709947	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44270894	44270894	+	Missense_Mutation	SNP	G	A	A	rs145436818	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48563921	48563921	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2331550	2331550	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67111003	67111003	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1053779	1053779	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66873755	66873755	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169791861	169791861	+	Silent	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87195392	87195392	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87199405	87199405	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87340017	87340017	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87043132	87043132	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20666195	20666195	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698593	20698593	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698714	20698714	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48167849	48167849	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48745768	48745768	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17457472	17457472	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43707970	43707970	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119024942	119024942	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89736526	89736526	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204193298	204193298	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABTB2	25841	broad.mit.edu	37	11	34218874	34218874	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35501283	35501283	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89399982	89399982	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO2	50	broad.mit.edu	37	22	41923336	41923336	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTB	60	broad.mit.edu	37	7	5568741	5568741	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18153020	18153020	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236881170	236881170	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236890981	236890981	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236898989	236898989	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR5	79913	broad.mit.edu	37	20	37400088	37400088	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT2	140625	broad.mit.edu	37	1	2938328	2938328	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123317361	123317361	+	Intron	SNP	G	C	C	rs116315422	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156889996	156889996	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207408076	207408076	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24193068	24193068	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39624743	39624743	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444795	106444795	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106512170	106512170	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106830032	106830032	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107178872	107178872	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8656629	8656629	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33535001	33535001	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33614501	33614501	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28302316	28302316	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS8	11095	broad.mit.edu	37	11	130275413	130275413	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154571062	154571062	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167844442	167844442	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7626256	7626256	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690964	7690964	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131792968	131792968	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AES	166	broad.mit.edu	37	19	3055757	3055757	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L1	134265	broad.mit.edu	37	5	148715098	148715098	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88048119	88048119	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919180	147919180	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100623934	100623934	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150840704	150840704	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP7	653268	broad.mit.edu	37	10	51465342	51465342	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100361836	100361836	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPS	8540	broad.mit.edu	37	2	178326701	178326701	+	Silent	SNP	C	T	T	rs146526791		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27877209	27877209	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105420104	105420104	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105420649	105420649	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832465	4832465	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77752625	77752625	+	Splice_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96904116	96904116	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19866107	19866107	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86251228	86251228	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49957633	49957633	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91625048	91625049	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91641910	91641910	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91667800	91667800	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137776546	137776546	+	Silent	SNP	C	A	A	rs113371817		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105290786	105290786	+	3'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34175307	34175307	+	5'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG9	79796	broad.mit.edu	37	11	111680426	111680426	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29497970	29497970	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73786094	73786094	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113346929	113346929	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113353610	113353610	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85383141	85383141	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233272591	233272591	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202625565	202625565	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1	146861	broad.mit.edu	37	17	33520879	33520879	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118071460	118071460	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115220534	115220534	+	Missense_Mutation	SNP	G	C	C	rs144014236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC2	29882	broad.mit.edu	37	9	140075363	140075364	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT2	285	broad.mit.edu	37	8	6360598	6360598	+	3'UTR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61844360	61844360	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908217	139908217	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67968379	67968379	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69423642	69423642	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14799120	14799120	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD35	148741	broad.mit.edu	37	1	145561457	145561457	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82905784	82905784	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55455694	55455694	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77817832	77817832	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99478723	99478723	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99837669	99837669	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5687254	5687254	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101437376	101437376	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101477326	101477326	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101477368	101477368	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22272253	22272253	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90349374	90349374	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69330136	69330136	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA4	307	broad.mit.edu	37	2	70015301	70015301	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36571722	36571722	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36571916	36571916	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71808516	71808516	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G2	8906	broad.mit.edu	37	14	24035553	24035553	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115230739	115230739	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27354704	27354704	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58430752	58430752	+	5'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115335573	115335573	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35168171	35168171	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARG1	383	broad.mit.edu	37	6	131894469	131894469	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP18	93663	broad.mit.edu	37	6	129959400	129959400	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119134833	119134833	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57869642	57869642	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156928511	156928511	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7511867	7511867	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155931973	155931973	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135825841	135825841	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23297664	23297664	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC1A	10552	broad.mit.edu	37	7	98951489	98951489	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750461	35750461	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131128061	131128061	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131140239	131140239	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP3	55616	broad.mit.edu	37	1	23769112	23769112	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123267198	123267198	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76397818	76397818	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155319424	155319424	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPA	443	broad.mit.edu	37	17	3386869	3386869	+	Missense_Mutation	SNP	T	C	C	rs144321760	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324221	31324221	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117067469	117067469	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124383045	124383045	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161751777	161751777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64665575	64665575	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4B	23192	broad.mit.edu	37	2	242607954	242607955	+	Splice_Site	DNP	GG	CT	CT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160029594	160029594	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113485908	113485908	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42471568	42471568	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160151363	160151363	+	Intron	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10417183	10417183	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10452270	10452270	+	Intron	SNP	G	T	T	rs7627180	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203671373	203671373	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203693068	203693068	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124235838	124235838	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26535737	26535737	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	77119331	77119331	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142253921	142253921	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28842090	28842090	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7L3	56970	broad.mit.edu	37	17	42274518	42274518	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN2	8313	broad.mit.edu	37	17	63526224	63526224	+	Intron	DEL	A	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79163449	79163449	+	3'UTR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71571616	71571616	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAALC	79870	broad.mit.edu	37	8	104225192	104225192	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039057	11039057	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69665848	69665848	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70065661	70065661	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2L1	55971	broad.mit.edu	37	7	97935713	97935713	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33384214	33384214	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33545228	33545228	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156617860	156617860	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136582537	136582537	+	Missense_Mutation	SNP	G	T	T	rs34541670	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18192350	18192350	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70049505	70049505	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60548154	60548154	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60577385	60577385	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32639837	32639837	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43315903	43315903	+	Intron	SNP	G	C	C	rs3982203		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43318782	43318782	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16419108	16419108	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLL	66037	broad.mit.edu	37	2	198621146	198621146	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32841622	32841622	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36936026	36936026	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSDC1	55108	broad.mit.edu	37	1	32859677	32859677	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49694957	49694957	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD16	118663	broad.mit.edu	37	10	124090663	124090663	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BVES	11149	broad.mit.edu	37	6	105581345	105581345	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BVES	11149	broad.mit.edu	37	6	105581378	105581378	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf72	196740	broad.mit.edu	37	10	50315879	50315879	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf42	160298	broad.mit.edu	37	11	6231041	6231041	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf61	79684	broad.mit.edu	37	11	124661392	124661392	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294562	109294562	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf4	57102	broad.mit.edu	37	12	4639286	4639286	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf4	57102	broad.mit.edu	37	12	4645226	4645226	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97082874	97082874	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf74	338809	broad.mit.edu	37	12	93100961	93100961	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81227931	81227931	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf166B	145497	broad.mit.edu	37	14	77297798	77297798	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74206175	74206175	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76463288	76463288	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34647571	34647571	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf74	201243	broad.mit.edu	37	17	7330141	7330141	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf98	388381	broad.mit.edu	37	17	36993570	36993570	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30503514	30503514	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179339085	179339085	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170964579	170964579	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf161	126868	broad.mit.edu	37	1	116669952	116669952	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037434	75037434	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf88	128344	broad.mit.edu	37	1	111890448	111890448	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20226730	20226730	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17566788	17566788	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf57	54059	broad.mit.edu	37	21	47716153	47716153	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf81	391267	broad.mit.edu	37	21	15347454	15347454	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14418448	14418448	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14418566	14418566	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf25	128989	broad.mit.edu	37	22	20040998	20040998	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf28	51493	broad.mit.edu	37	22	32784091	32784099	+	Intron	DEL	AGGAGAGGA	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD2L	9854	broad.mit.edu	37	11	118983090	118983090	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37469944	37469944	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10158233	10158233	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119232592	119232592	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf35	339883	broad.mit.edu	37	3	37458897	37458897	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4A	720	broad.mit.edu	37	6	31962229	31962229	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113541196	113541196	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf33	132321	broad.mit.edu	37	4	130030422	130030422	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf23	79614	broad.mit.edu	37	5	32789467	32789467	+	5'UTR	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf106	64771	broad.mit.edu	37	6	34558264	34558264	+	3'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165714104	165714104	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53989729	53989729	+	Intron	SNP	G	A	A	rs138875104	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54025355	54025355	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31746724	31746724	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf45	136263	broad.mit.edu	37	7	129853326	129853326	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120781037	120781037	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120876814	120876814	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57349153	57349153	+	Splice_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57420396	57420396	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57422239	57422239	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf170	401535	broad.mit.edu	37	9	89771610	89771610	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf5	23731	broad.mit.edu	37	9	111808480	111808480	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf6	54942	broad.mit.edu	37	9	111701527	111701527	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf84	158401	broad.mit.edu	37	9	114454850	114454850	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf91	203197	broad.mit.edu	37	9	117405346	117405346	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15593956	15593956	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49824903	49824904	+	Intron	DNP	CC	AT	AT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86171659	86171659	+	Missense_Mutation	SNP	G	T	T	rs151178960	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA6	765	broad.mit.edu	37	1	9009559	9009559	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA6	765	broad.mit.edu	37	1	9019111	9019111	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566788	2566788	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2711159	2711159	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2711212	2711212	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53766839	53766839	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181452842	181452842	+	5'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49074177	49074177	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48649379	48649379	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48649536	48649536	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48678635	48678635	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1245923	1245923	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18816463	18816463	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062433	86062433	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7341682	7341682	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188225499	188225499	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93065249	93065249	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93090242	93090242	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134617840	134617840	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALY	50632	broad.mit.edu	37	10	135139522	135139522	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12870705	12870705	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209776697	209776697	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110820197	110820197	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7528088	7528088	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARNS1	57571	broad.mit.edu	37	11	67191766	67191766	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44581416	44581416	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN2	57513	broad.mit.edu	37	17	73503731	73503731	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96064929	96064929	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38861100	38861100	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119146999	119146999	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBWD6	644019	broad.mit.edu	37	9	69205514	69205514	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14024011	14024011	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219869225	219869225	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC114	93233	broad.mit.edu	37	19	48800267	48800284	+	In_Frame_Del	DEL	GGGCCAGTGCTGGAGGCA	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33444457	33444457	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16594080	16594080	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC14	64770	broad.mit.edu	37	3	123633788	123633788	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC28A	25901	broad.mit.edu	37	6	139100986	139100986	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND1	595	broad.mit.edu	37	11	69458580	69458580	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND3	896	broad.mit.edu	37	6	41907959	41907959	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2485898	2485898	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR5	1234	broad.mit.edu	37	3	46415173	46415173	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCS	9973	broad.mit.edu	37	11	66367901	66367901	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73478236	73478236	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17073111	17073111	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7586276	7586276	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7654058	7654059	+	Splice_Site	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158227158	158227158	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158147036	158147036	+	5'Flank	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325960	158325960	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35828663	35828663	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167402220	167402220	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2	914	broad.mit.edu	37	1	117302948	117302948	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51729250	51729250	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157806002	157806002	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD82	3732	broad.mit.edu	37	11	44640631	44640631	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD84	8832	broad.mit.edu	37	1	160535278	160535279	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24488132	24488132	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537495	24537495	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22078828	22078828	+	5'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95164334	95164334	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95189928	95189928	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19838966	19838966	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64178899	64178899	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH1	999	broad.mit.edu	37	16	68835521	68835521	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44815276	44815276	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73330613	73330613	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73462174	73462174	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73468968	73468968	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26885662	26885662	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26885712	26885712	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176001214	176001214	+	Intron	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDNF	441549	broad.mit.edu	37	10	14870272	14870273	+	Splice_Site	INS	-	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT15	146822	broad.mit.edu	37	17	14139564	14139564	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEBPZ	10153	broad.mit.edu	37	2	37428995	37428995	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEBPZ	10153	broad.mit.edu	37	2	37429980	37429980	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789916	15789916	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789989	15789989	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15794056	15794056	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11047317	11047317	+	5'UTR	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135940545	135940545	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPC1	1060	broad.mit.edu	37	4	68374577	68374577	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104061898	104061898	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170L	645455	broad.mit.edu	37	4	119444550	119444550	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	644705	644705	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERCAM	51148	broad.mit.edu	37	9	131196681	131196681	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182403786	182403786	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31916238	31916238	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50830205	50830205	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50863202	50863202	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK2	11200	broad.mit.edu	37	22	29095762	29095762	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5903186	5903186	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	361435	361435	+	5'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23767683	23767683	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233394577	233394577	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19655881	19655881	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1511719	1511719	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16352635	16352635	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74447062	74447062	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4A	50856	broad.mit.edu	37	12	8289466	8289466	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71043307	71043307	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122794255	122794255	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN3	1201	broad.mit.edu	37	16	28498850	28498850	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10502976	10502976	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7303702	7303702	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57728627	57728627	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87951745	87951745	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88365868	88365868	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47939841	47939841	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32767154	32767154	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135048010	135048010	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTD1	124817	broad.mit.edu	37	17	40950804	40950804	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTD1	124817	broad.mit.edu	37	17	40959840	40959840	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17466925	17466925	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205027166	205027166	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74420485	74420485	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74535768	74535768	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3078979	3078979	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100141943	100141943	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99715985	99715985	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1445042	1445042	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997419	146997419	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147092811	147092811	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914500	147914500	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76509954	76509954	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	107204325	107204325	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103399993	103399993	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103461371	103461371	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71683578	71683578	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121209165	121209165	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121216051	121216051	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121228556	121228556	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121295871	121295871	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121353530	121353530	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70851890	70851890	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A1	1277	broad.mit.edu	37	17	48272060	48272060	+	Intron	SNP	G	A	A	rs76121182		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61937179	61937179	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86307879	86307879	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86426884	86426884	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7420475	7420475	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189868724	189868724	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189870139	189870139	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110831280	110831280	+	Silent	SNP	C	A	A	rs144401828	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111082234	111082234	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137677084	137677084	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189933473	189933473	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10091538	10091538	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238267099	238267099	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238271697	238271697	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48603953	48603953	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48613683	48613683	+	Missense_Mutation	SNP	G	T	T	rs149267939	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48623721	48623721	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3665302	3665302	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130298512	130298512	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPZ1	22818	broad.mit.edu	37	12	54744395	54744395	+	3'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47765383	47765383	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX5B	1329	broad.mit.edu	37	2	98263846	98263846	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68346330	68346330	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131418774	131418774	+	Silent	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24544505	24544505	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211447320	211447320	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211476856	211476856	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211518747	211518747	+	Splice_Site	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211539552	211539552	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29103855	29103856	+	Intron	INS	-	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207871002	207871002	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207782630	207782630	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRCP	27297	broad.mit.edu	37	7	65579910	65579910	+	5'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRCP	27297	broad.mit.edu	37	7	65592833	65592833	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49700890	49700890	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75944444	75944444	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153924976	153924976	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115269042	115269042	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19315840	19315840	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	33998682	33998682	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113254028	113254028	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113332155	113332155	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347732	113347732	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113364583	113364583	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113420618	113420618	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113648989	113648989	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75968002	75968002	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75968734	75968734	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166451769	166451769	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18123564	18123564	+	Splice_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST1	1469	broad.mit.edu	37	20	23729586	23729586	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCF	10664	broad.mit.edu	37	16	67650625	67650625	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68525985	68525985	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11199641	11199641	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11236895	11236895	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49018699	49018699	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CL1	6376	broad.mit.edu	37	16	57413650	57413650	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44871437	44871437	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44873158	44873158	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL1	2919	broad.mit.edu	37	4	74735479	74735479	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL2	2920	broad.mit.edu	37	4	74963511	74963511	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36163104	36163104	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBRD1	79901	broad.mit.edu	37	2	172398356	172398356	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105765459	105765459	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50811792	50811793	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143958031	143958031	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994820	143994820	+	Silent	SNP	G	T	T	rs140463031		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143995724	143995725	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104593791	104593791	+	Splice_Site	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP20A1	57404	broad.mit.edu	37	2	204116833	204116833	+	Splice_Site	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A6	1548	broad.mit.edu	37	19	41349862	41349862	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41533259	41533259	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2U1	113612	broad.mit.edu	37	4	108866742	108866742	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99332708	99332708	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4Z1	199974	broad.mit.edu	37	1	47582406	47582406	+	Splice_Site	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYR61	3491	broad.mit.edu	37	1	86047600	86047600	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58522129	58522129	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAK	26007	broad.mit.edu	37	11	61110055	61110055	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4B	80174	broad.mit.edu	37	17	42818803	42818803	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117864321	117864321	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD2	131566	broad.mit.edu	37	3	98600294	98600294	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155278470	155278470	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14976668	14976668	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	85787122	85787122	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110725922	110725922	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118577319	118577319	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX46	9879	broad.mit.edu	37	5	134126186	134126186	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA6	1671	broad.mit.edu	37	8	6783308	6783308	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179322515	179322515	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14620435	14620435	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137080403	137080403	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137154483	137154483	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHDDS	79947	broad.mit.edu	37	1	26784343	26784343	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX16	8449	broad.mit.edu	37	6	30630700	30630700	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40660703	40660703	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19625313	19625313	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK1	22943	broad.mit.edu	37	10	54074333	54074333	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83344203	83344203	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83525540	83525540	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1581246	1581246	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32662374	32662374	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32868006	32868006	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118556759	118556759	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21750234	21750234	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21048249	21048249	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21053462	21053462	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	84800703	84800703	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196821991	196821991	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11522936	11522937	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11532817	11532817	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11651011	11651011	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302410	186302410	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183624097	183624097	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC2	27000	broad.mit.edu	37	7	102965044	102965044	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	66989047	66989048	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP1	116092	broad.mit.edu	37	20	44437722	44437722	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111484736	111484736	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111638539	111638539	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62979532	62979532	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67266800	67266800	+	Intron	SNP	G	T	T	rs111341291	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73159612	73159612	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116538601	116538601	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66276615	66276615	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379709	154379709	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154684244	154684244	+	3'UTR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64020321	64020321	+	Intron	DEL	C	-	-	rs7310030	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32944168	32944168	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27148031	27148031	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113295192	113295192	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113890532	113890532	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117299216	117299216	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56470661	56470661	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096014	167096014	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44010770	44010770	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80584462	80584462	+	3'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71838328	71838328	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F5	1875	broad.mit.edu	37	8	86124414	86124414	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EARS2	124454	broad.mit.edu	37	16	23544097	23544097	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158523984	158523984	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172474738	172474738	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19975080	19975080	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132958799	132958799	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63206217	63206217	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31472333	31472333	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1B	10289	broad.mit.edu	37	3	40352459	40352459	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37368691	37368691	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45444147	45444147	+	Intron	DEL	A	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2402301	2402301	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99980853	99980853	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL3	80237	broad.mit.edu	37	15	44090525	44090525	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EME2	197342	broad.mit.edu	37	16	1826131	1826131	+	Silent	SNP	G	T	T	rs151082077	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101091001	101091001	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14740861	14740861	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120630631	120630631	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120631544	120631544	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131979581	131979582	+	Intron	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77705138	77705138	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132515720	132515720	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46609494	46609494	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPGN	255324	broad.mit.edu	37	4	75178861	75178861	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89498500	89498500	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93965525	93965525	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22913015	22913015	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22924292	22924292	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134967203	134967203	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100416023	100416023	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142560926	142560926	+	5'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPO	2056	broad.mit.edu	37	7	100319086	100319086	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14020371	14020371	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14024784	14024784	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102814692	102814692	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5624341	5624341	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133834083	133834083	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F10	2159	broad.mit.edu	37	13	113803629	113803629	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169487546	169487546	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138612909	138612909	+	Translation_Start_Site	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138612921	138612921	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50291695	50291695	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113B	91523	broad.mit.edu	37	12	47629393	47629393	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153413916	153413916	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM116B	414918	broad.mit.edu	37	22	50752226	50752226	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM122B	159090	broad.mit.edu	37	X	133923049	133923049	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM122B	159090	broad.mit.edu	37	X	133923194	133923194	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63406053	63406053	+	3'UTR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124A	220108	broad.mit.edu	37	13	51854668	51854668	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	22985856	22985856	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151289	139151289	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74130338	74130338	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150396183	150396183	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198A	729085	broad.mit.edu	37	3	43078960	43078960	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68194445	68194445	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826180	21826180	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826202	21826202	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46A	55603	broad.mit.edu	37	6	82461348	82461348	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961437	34961437	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37027551	37027551	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16734382	16734382	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190203637	190203637	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12039134	12039134	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128371247	128371247	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43625488	43625488	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86B1	85002	broad.mit.edu	37	8	12049226	12049226	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM86C	55199	broad.mit.edu	37	11	71507233	71507233	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13061929	13061929	+	Translation_Start_Site	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163070536	163070536	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187540161	187540161	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616178	92616178	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127653834	127653834	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127664519	127664519	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127800495	127800495	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8130912	8130912	+	Missense_Mutation	SNP	C	A	A	rs139098536		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8194190	8194190	+	Silent	SNP	G	T	T	rs150195254		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102614193	102614193	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15500716	15500716	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153244298	153244298	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159272177	159272177	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137801797	137801797	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718463	157718463	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157489488	157489488	+	Intron	SNP	T	A	A	rs3811032	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157504517	157504517	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159778733	159778733	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125029803	125029803	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125058189	125058189	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT2	10979	broad.mit.edu	37	14	53326524	53326524	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108387304	108387304	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108388038	108388038	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125325977	125325977	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF2	55079	broad.mit.edu	37	3	62358243	62358243	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38272335	38272335	+	Missense_Mutation	SNP	C	T	T	rs67268517		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHDC1	85462	broad.mit.edu	37	4	153896824	153896824	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72483750	72483750	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP8	23770	broad.mit.edu	37	19	18650647	18650647	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55766895	55766895	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282982	152282982	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283359	152283359	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904849	21904849	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142469373	142469373	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84531559	84531559	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607685	84607685	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128478309	128478309	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128480748	128480748	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180043331	180043331	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180057260	180057260	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89424270	89424270	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXA3	3171	broad.mit.edu	37	19	46376291	46376291	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2977717	2977717	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114269749	114269749	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272376	52272376	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR3	2359	broad.mit.edu	37	19	52327946	52327946	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79393416	79393416	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79403484	79403484	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79403838	79403838	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14797585	14797585	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52186887	52186887	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32836597	32836597	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975130	44975130	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49217632	49217632	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162459330	162459330	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78432683	78432683	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39169720	39169720	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD4	8322	broad.mit.edu	37	11	86663276	86663276	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29599302	29599302	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27141328	27141328	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161292658	161292658	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46314713	46314713	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151560648	151560648	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46125848	46125848	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161520789	161520789	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27586155	27586155	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26581701	26581701	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30891521	30891521	+	Silent	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT11	63917	broad.mit.edu	37	7	151800146	151800146	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155158135	155158135	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172735944	172735944	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173301491	173301491	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173803979	173803979	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL	51083	broad.mit.edu	37	11	68455648	68455648	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPDHS	26330	broad.mit.edu	37	19	36033775	36033775	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9828710	9828710	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89657192	89657192	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109087055	109087056	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44186253	44186253	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79118035	79118035	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154271039	154271039	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154284034	154284034	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1	2672	broad.mit.edu	37	1	92941703	92941703	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	118030298	118030298	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA3	2676	broad.mit.edu	37	5	137593648	137593648	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38880851	38880851	+	5'Flank	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42718755	42718755	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF1	64599	broad.mit.edu	37	7	100283029	100283029	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417236	150417236	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150384081	150384081	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP2	26157	broad.mit.edu	37	7	150389421	150389421	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP4	55303	broad.mit.edu	37	7	150270151	150270151	+	3'UTR	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3586949	3586950	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30714350	30714350	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLA	2717	broad.mit.edu	37	X	100656609	100656609	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57859079	57859079	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39033698	39033698	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58715346	58715346	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58606978	58606978	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYCTK	132158	broad.mit.edu	37	3	52324424	52324424	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131020133	131020133	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121386524	121386524	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167747118	167747118	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155822978	155822978	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOPC	57120	broad.mit.edu	37	6	117896421	117896421	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORASP2	26003	broad.mit.edu	37	2	171822343	171822343	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH4	54865	broad.mit.edu	37	1	156565192	156565192	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42477130	42477130	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176622961	176622961	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826211	46826211	+	Silent	SNP	C	A	A	rs142588297	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134940764	134940764	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22390301	22390301	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043477	20043477	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25701168	25701168	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25861766	25861766	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR17	2840	broad.mit.edu	37	2	128408648	128408648	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105859086	105859086	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150348995	150348995	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89933775	89933775	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101969999	101969999	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117121902	117121902	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117150232	117150232	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176026902	176026902	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM2	29899	broad.mit.edu	37	1	109465136	109465136	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113634792	113634792	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37903227	37903227	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765194	11765194	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158234056	158234057	+	Intron	DNP	CC	AG	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158257770	158257770	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37271748	37271748	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37324781	37324781	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14019043	14019044	+	Frame_Shift_Ins	INS	-	G	G	rs77738206		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432860	104432860	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14564532	14564532	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86416434	86416434	+	Splice_Site	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34007929	34007929	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7348029	7348029	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173711	126173711	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRPR	2925	broad.mit.edu	37	X	16170416	16170416	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119720926	119720926	+	Silent	SNP	G	A	A	rs141817453	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2P1	442245	broad.mit.edu	37	6	111368494	111368494	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTT2	2953	broad.mit.edu	37	22	24323075	24323075	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127453740	127453740	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZF1	64412	broad.mit.edu	37	20	23350848	23350848	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26502085	26502085	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN2	60484	broad.mit.edu	37	1	156593565	156593565	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30676371	30676371	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55113470	55113470	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC10	83933	broad.mit.edu	37	22	50684601	50684601	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18684215	18684215	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18975620	18975620	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242192683	242192683	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31789588	31789588	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58120873	58120873	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65409587	65409587	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65423337	65423337	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32163911	32163911	+	5'Flank	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28359782	28359782	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72639969	72639969	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91728125	91728125	+	Silent	SNP	C	A	A	rs148254635		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91781705	91781705	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGD	3081	broad.mit.edu	37	3	120389380	120389380	+	Splice_Site	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGD	3081	broad.mit.edu	37	3	120389445	120389445	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIC2	23119	broad.mit.edu	37	22	21801073	21801073	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71103759	71103759	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75113390	75113390	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75118049	75118049	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186077855	186077855	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMOX1	3162	broad.mit.edu	37	22	35783020	35783020	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76452231	76452231	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK2	29911	broad.mit.edu	37	19	12878325	12878325	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD1	84072	broad.mit.edu	37	1	150689710	150689711	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB6	3216	broad.mit.edu	37	17	46673903	46673903	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193135	152193135	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3A1	9955	broad.mit.edu	37	17	13503879	13503879	+	Missense_Mutation	SNP	G	C	C	rs78372491		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22157584	22157584	+	Splice_Site	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88039932	88039932	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53576030	53576030	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53619354	53619354	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HVCN1	84329	broad.mit.edu	37	12	111088015	111088015	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71012710	71012710	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71061506	71061506	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1	3382	broad.mit.edu	37	7	8167340	8167340	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44	10561	broad.mit.edu	37	1	79120848	79120848	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNB1	3456	broad.mit.edu	37	9	21077760	21077760	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129225199	129225199	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65681620	65681620	+	Splice_Site	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP2	10644	broad.mit.edu	37	3	185407541	185407541	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23390963	23390963	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL4	444882	broad.mit.edu	37	19	46543514	46543514	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130413205	130413205	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18691926	18691926	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160061886	160061886	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42166634	42166634	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13	3596	broad.mit.edu	37	5	131995337	131995337	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81582955	81582955	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18R1	8809	broad.mit.edu	37	2	102997948	102997948	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113742535	113742535	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RN	3557	broad.mit.edu	37	2	113875636	113875636	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207074989	207074989	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28513325	28513325	+	Missense_Mutation	SNP	C	T	T	rs149151528	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62504737	62504737	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120595501	120595501	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41739824	41739824	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41740001	41740001	+	5'UTR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143129581	143129581	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143191873	143191873	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS10	55174	broad.mit.edu	37	8	19681564	19681565	+	Intron	DNP	TA	AT	AT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153745702	153745702	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS9	55756	broad.mit.edu	37	8	28654167	28654167	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPP	3652	broad.mit.edu	37	1	46206734	46206734	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCH	64799	broad.mit.edu	37	15	67677159	67677159	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75885525	75885525	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66638250	66638250	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50679571	50679571	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182347350	182347350	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15559167	15559167	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760582	15760582	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37627227	37627227	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422758	31422758	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31335940	31335940	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336248	31336248	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31371127	31371127	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374572	31374572	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102231721	102231721	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52820932	52820932	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156649804	156649804	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24533500	24533500	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882228	152882228	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IZUMO1	284359	broad.mit.edu	37	19	49247528	49247528	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42747054	42747054	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH4	84502	broad.mit.edu	37	14	24040242	24040242	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD5	131377	broad.mit.edu	37	3	42730269	42730269	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033354	30033354	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112318702	112318702	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21305369	21305369	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21698890	21698890	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155566362	155566362	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711814	155711814	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215259917	215259917	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154821910	154821910	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138606571	138606571	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196398984	196398984	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110984554	110984554	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143586702	143586702	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD17	79734	broad.mit.edu	37	22	37453354	37453354	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62611152	62611152	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106369571	106369571	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15703455	15703455	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27786399	27786399	+	Silent	SNP	G	T	T	rs146629703		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39880114	39880114	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155895871	155895871	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29454784	29454784	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79748634	79748634	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118228100	118228100	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57182816	57182817	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94039267	94039267	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95505129	95505129	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108278872	108278872	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868868	36868868	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8930077	8930077	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72348399	72348399	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91522499	91522499	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF22	3835	broad.mit.edu	37	16	29809685	29809685	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF25	3834	broad.mit.edu	37	6	168445706	168445706	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900791	51900791	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51902231	51902231	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45232525	45232525	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26174779	26174779	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341634	55341634	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55246701	55246701	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74289627	74289627	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC8A	55220	broad.mit.edu	37	1	205312293	205312293	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70293455	70293455	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL23	151230	broad.mit.edu	37	2	170592412	170592412	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86877207	86877207	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733252	152733252	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38910148	38910148	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38953178	38953178	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39118699	39118699	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52911613	52911613	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52985302	52985302	+	Silent	SNP	G	A	A	rs112771714	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253398	32253398	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-1	337882	broad.mit.edu	37	21	31852685	31852685	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-1	85285	broad.mit.edu	37	17	39346669	39346670	+	Intron	DNP	CC	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-2	85291	broad.mit.edu	37	17	39334263	39334263	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201352158	201352158	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6975928	6975928	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129637025	129637025	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129723403	129723403	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129777622	129777622	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21513790	21513790	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112462651	112462651	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183190027	183190027	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133967067	133967067	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM5	7805	broad.mit.edu	37	1	31212862	31212862	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP6	55323	broad.mit.edu	37	15	71124814	71124814	+	Silent	SNP	C	T	T	rs148356697		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAT2	7462	broad.mit.edu	37	7	73631307	73631307	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAYN	143903	broad.mit.edu	37	11	111420459	111420460	+	Missense_Mutation	DNP	GG	AT	AT	rs143228822		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46716266	46716266	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46724979	46724979	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136564990	136564990	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHAL6A	160287	broad.mit.edu	37	11	18487393	18487393	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL2	10536	broad.mit.edu	37	12	6939836	6939836	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LFNG	3955	broad.mit.edu	37	7	2559920	2559920	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LFNG	3955	broad.mit.edu	37	7	2566617	2566617	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38523600	38523600	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087675	55087675	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55174924	55174924	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105404964	105404964	+	5'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97832850	97832850	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX1	84708	broad.mit.edu	37	4	54347885	54347885	+	Splice_Site	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444309	150444309	+	5'Flank	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64313133	64313133	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936517	21936517	+	RNA	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936764	21936764	+	RNA	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	37202075	37202075	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22558346	22558346	+	5'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728323	728323	broad.mit.edu	37	2	243037287	243037287	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC93432	93432	broad.mit.edu	37	7	141833798	141833798	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23011092	23011092	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23011113	23011113	+	RNA	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23104852	23104852	+	RNA	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOR	4014	broad.mit.edu	37	1	153233535	153233536	+	In_Frame_Ins	INS	-	CGG	CGG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160998131	160998131	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160998401	160998401	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161025950	161025950	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161027706	161027706	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1490065	1490065	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82409232	82409232	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82446566	82446566	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19813334	19813334	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99470110	99470110	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85982459	85982459	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105507492	105507492	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105510050	105510051	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141113955	141113955	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141143691	141143691	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141680576	141680576	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141762874	141762874	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141777508	141777508	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57572789	57572789	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170024984	170024984	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170048350	170048350	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68193386	68193386	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12336871	12336871	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25605014	25605015	+	Intron	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC43	254050	broad.mit.edu	37	12	122669147	122669147	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC43	254050	broad.mit.edu	37	12	122676147	122676147	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136679	40136679	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC58	116064	broad.mit.edu	37	3	120050100	120050100	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92170289	92170289	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70488916	70488916	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70505055	70505055	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37163247	37163247	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40651089	40651089	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40657724	40657724	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40671873	40671873	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204586854	204586854	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54958983	54958983	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23417697	23417697	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6K	54742	broad.mit.edu	37	8	143782017	143782017	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160728993	160728993	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6589040	6589040	+	Missense_Mutation	SNP	A	G	G	rs75006006		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235901345	235901345	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235901984	235901984	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235938430	235938430	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20199950	20199950	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2262452	2262452	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75649135	75649135	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65344638	65344638	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179193482	179193482	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149671454	149671454	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161530900	161530900	+	Silent	SNP	G	T	T	rs138952496		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K2	5871	broad.mit.edu	37	11	64566364	64566364	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45927281	45927281	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK9	5601	broad.mit.edu	37	5	179691800	179691800	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16091000	16091000	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220777327	220777327	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82045298	82045298	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	99019307	99019307	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC2R	4158	broad.mit.edu	37	18	13885377	13885377	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90387476	90387476	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90491468	90491468	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED10	84246	broad.mit.edu	37	5	6378684	6378684	+	5'Flank	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151148114	151148114	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70348686	70348686	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116420924	116420924	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37576205	37576205	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131902533	131902533	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED24	9862	broad.mit.edu	37	17	38187709	38187709	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126667256	126667256	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126674923	126674923	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112779280	112779280	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116381097	116381097	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP5	8076	broad.mit.edu	37	12	8813495	8813495	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFN2	9927	broad.mit.edu	37	1	12061527	12061527	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD6	54842	broad.mit.edu	37	2	191353516	191353516	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141752054	141752054	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141805626	141805626	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42042588	42042588	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517B	574483	broad.mit.edu	37	19	54224279	54224279	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14355355	14355355	+	3'UTR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56290356	56290356	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLF2	8079	broad.mit.edu	37	12	6861144	6861144	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104722248	104722248	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168352255	168352255	+	Silent	SNP	G	T	T	rs145659193	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118363985	118363985	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154884655	154884655	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89087062	89087062	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89180030	89180030	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55536706	55536706	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44637694	44637694	+	Missense_Mutation	SNP	G	C	C	rs142807270		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100841620	100841620	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50546716	50546716	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132619061	132619061	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132693911	132693911	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71367020	71367020	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24689511	24689511	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24705184	24705184	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30439186	30439186	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	18129791	18129791	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRI1	84245	broad.mit.edu	37	19	13883024	13883024	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL2	51069	broad.mit.edu	37	6	43023909	43023909	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS30	10884	broad.mit.edu	37	5	44815242	44815242	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS6	64968	broad.mit.edu	37	21	35514856	35514856	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A15	219995	broad.mit.edu	37	11	60543016	60543016	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A7	58475	broad.mit.edu	37	11	60152572	60152572	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76313920	76313920	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76363740	76363740	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55709162	55709162	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLN	10232	broad.mit.edu	37	16	814223	814223	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLN	10232	broad.mit.edu	37	16	814999	814999	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB2	22921	broad.mit.edu	37	10	23399293	23399293	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17085041	17085041	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49933886	49933886	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151413614	151413614	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55473345	55473345	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR3	8897	broad.mit.edu	37	22	30416000	30416000	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR6	9107	broad.mit.edu	37	13	25840328	25840328	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1B	4544	broad.mit.edu	37	11	92714849	92714849	+	Missense_Mutation	SNP	C	T	T	rs148152472		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009842	9009842	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9012535	9012535	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9019538	9019538	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046404	9046404	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046491	9046491	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048898	9048899	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9072226	9072226	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100681105	100681105	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683741	100683741	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100696199	100696199	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC1	4582	broad.mit.edu	37	1	155161953	155161953	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1082257	1082257	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1097313	1097313	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113490978	113490978	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45797911	45797911	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42762704	42762704	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3242297	3242297	+	Missense_Mutation	SNP	C	G	G	rs149921437		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3248372	3248372	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA8	54587	broad.mit.edu	37	1	1289900	1289900	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH10	4628	broad.mit.edu	37	17	8415964	8415964	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15893863	15893863	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10231126	10231127	+	Intron	DEL	CC	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10258329	10258329	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108173064	108173064	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399727	10399727	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10424587	10424587	+	3'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10440587	10440587	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10555781	10555781	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10360870	10360870	+	Silent	SNP	G	T	T	rs145461988	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10363238	10363238	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23866151	23866151	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23896172	23896172	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10309716	10309716	+	Splice_Site	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36691697	36691697	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101265420	101265421	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30418532	30418532	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYNN	55892	broad.mit.edu	37	3	169498321	169498321	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109704903	109704903	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27401235	27401235	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27493336	27493336	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34862490	34862490	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31094607	31094607	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52609193	52609193	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52646197	52646197	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128338352	128338352	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12642536	12642536	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2021609	2021609	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62836921	62836921	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89868097	89868097	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89885701	89885701	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896172	89896172	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101727035	101727035	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101944568	101944568	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARG2	79664	broad.mit.edu	37	15	60768354	60768354	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400636	78400636	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78531021	78531021	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78552936	78552936	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204001388	204001388	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA4	8031	broad.mit.edu	37	10	51584632	51584632	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152410462	152410462	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152487558	152487558	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152534675	152534675	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21555752	21555752	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21592478	21592478	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70416195	70416195	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70451078	70451078	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD6	63974	broad.mit.edu	37	7	31378156	31378156	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77221367	77221367	+	Splice_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233759415	233759415	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25481599	25481599	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63769118	63769118	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1037913	1037913	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821357	5821357	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54327411	54327411	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56416265	56416265	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7063623	7063623	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587214	247587214	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160951236	160951236	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151784176	151784176	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50744652	50744652	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL11	25926	broad.mit.edu	37	17	65731993	65731993	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33468330	33468330	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14976435	14976435	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14989539	14989539	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26108258	26108258	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150698836	150698836	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32168733	32168733	+	Missense_Mutation	SNP	G	A	A	rs138572849		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26917440	26917440	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155749817	155749817	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66191476	66191476	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44575406	44575406	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44579392	44579392	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPNT	255743	broad.mit.edu	37	4	106890090	106890090	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153655054	153655054	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34867094	34867094	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY2R	4887	broad.mit.edu	37	4	156135639	156135639	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1D1	9572	broad.mit.edu	37	17	38252783	38252783	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200017512	200017512	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107871601	107871601	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84738815	84738815	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50733708	50733708	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51254924	51254924	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6620303	6620303	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603588	5603588	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131240574	131240574	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132180009	132180009	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156845387	156845387	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849069	156849069	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849732	156849732	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD2	134492	broad.mit.edu	37	5	162887142	162887142	+	5'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD3	23386	broad.mit.edu	37	7	44467155	44467155	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69124946	69124946	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229596337	229596337	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13427867	13427867	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62	23636	broad.mit.edu	37	19	50411471	50411471	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092312	101092312	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8475303	8475303	+	5'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228469926	228469926	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228486332	228486332	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28195735	28195735	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123517813	123517813	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167674040	167674040	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50953624	50953624	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDH	4967	broad.mit.edu	37	7	44736903	44736903	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953963	161953963	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML3	56944	broad.mit.edu	37	1	114524191	114524191	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894150	123894150	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158548798	158548798	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14J1	442191	broad.mit.edu	37	6	29274975	29274975	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29555777	29555777	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248097596	248097596	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153610	248153610	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285304	248285304	+	5'Flank	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A1	4994	broad.mit.edu	37	17	3195613	3195613	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135624	55135624	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A47	403253	broad.mit.edu	37	11	48511074	48511074	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322128	55322128	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271426	59271426	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389623	20389623	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389719	20389719	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5345399	5345399	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4945727	4945727	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4511052	4511052	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4825233	4825233	+	Nonsense_Mutation	SNP	G	T	T	rs75407816	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A5	390084	broad.mit.edu	37	11	5989222	5989222	+	Missense_Mutation	SNP	C	A	A	rs150470399	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A5	390084	broad.mit.edu	37	11	5989550	5989550	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B1	387748	broad.mit.edu	37	11	5758106	5758106	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K2	402135	broad.mit.edu	37	3	98217148	98217148	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310500	56310500	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56257998	56257998	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230358	56230358	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725187	158725187	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123813850	123813850	+	Silent	SNP	A	T	T	rs76651236	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6V1	346517	broad.mit.edu	37	7	142749302	142749302	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H1	219469	broad.mit.edu	37	11	56058272	56058272	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55889871	55889871	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141618565	141618565	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958655	57958655	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OS9	10956	broad.mit.edu	37	12	58089584	58089584	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR1	130497	broad.mit.edu	37	2	19553257	19553257	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTC	5009	broad.mit.edu	37	X	38280369	38280369	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26687945	26687945	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72920736	72920736	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146067520	146067520	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29648297	29648297	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3594362	3594362	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3599033	3599033	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131539899	131539899	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131543623	131543623	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17570704	17570704	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17668497	17668497	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAEP	5047	broad.mit.edu	37	9	138454790	138454790	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103260500	103260500	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9520304	9520304	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9546647	9546647	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169632897	169632897	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112694329	112694329	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176679089	176679089	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176739120	176739120	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145057392	145057392	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP16	54956	broad.mit.edu	37	15	65559014	65559014	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226576435	226576435	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP6	56965	broad.mit.edu	37	15	72543436	72543436	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122264292	122264292	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127253575	127253575	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX8	7849	broad.mit.edu	37	2	113993208	113993208	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071803	134071803	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91368232	91368232	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55586972	55586972	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55839091	55839091	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56367613	56367613	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207106	58207106	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99605778	99605778	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140237095	140237095	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256759	140256759	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140262802	140262802	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140168129	140168129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605057	140605057	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140625580	140625580	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140625593	140625593	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140626431	140626432	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140615779	140615779	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140615835	140615835	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432667	140432667	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502399	140502399	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140530549	140530549	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559495	140559495	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC3	5098	broad.mit.edu	37	5	140856219	140856219	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82474669	82474669	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52733173	52733173	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71524403	71524403	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK4	54760	broad.mit.edu	37	19	1483271	1483271	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD2	5134	broad.mit.edu	37	6	170889182	170889182	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178879235	178879235	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183032866	183032866	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31855492	31855492	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31867988	31867988	+	Splice_Site	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72291955	72291955	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72295737	72295737	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144922182	144922182	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149247556	149247556	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA1	5160	broad.mit.edu	37	X	19375914	19375914	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761513	96761513	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA4	9601	broad.mit.edu	37	7	148701330	148701330	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK3	5165	broad.mit.edu	37	X	24512948	24512948	+	Missense_Mutation	SNP	C	T	T	rs112864206		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967276	41967276	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156874558	156874558	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEMT	10400	broad.mit.edu	37	17	17412723	17412723	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEPD	5184	broad.mit.edu	37	19	33953822	33953822	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92118631	92118631	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX3	8504	broad.mit.edu	37	6	143792077	143792077	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX7	5191	broad.mit.edu	37	6	137146476	137146476	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD2	267002	broad.mit.edu	37	1	249211025	249211025	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754060	49754060	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153312856	153312856	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR2	9749	broad.mit.edu	37	6	144074871	144074871	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHB	5245	broad.mit.edu	37	17	47489238	47489238	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133823337	133823337	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47630502	47630502	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KB	5298	broad.mit.edu	37	1	151298722	151298722	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98388154	98388154	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98469379	98469379	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204435933	204435933	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106507902	106507902	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99950544	99950544	+	Intron	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1A	8394	broad.mit.edu	37	1	151205138	151205138	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142829235	142829235	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47867068	47867068	+	Splice_Site	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110432808	110432808	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110463175	110463175	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476838	110476838	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110483284	110483284	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51751937	51751937	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51892578	51892578	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51892619	51892619	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155264023	155264023	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKMYT1	9088	broad.mit.edu	37	16	3024067	3024067	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKMYT1	9088	broad.mit.edu	37	16	3025738	3025738	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131479051	131479051	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G16	11145	broad.mit.edu	37	11	63357420	63357420	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186862044	186862044	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186946793	186946794	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807827	59807827	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC8	51316	broad.mit.edu	37	4	84028935	84028935	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC9	219348	broad.mit.edu	37	10	81903902	81903902	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75671409	75671409	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8630054	8630054	+	Silent	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95791988	95791988	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95930865	95930865	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81960704	81960704	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA2	59339	broad.mit.edu	37	8	38810807	38810807	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132093204	132093204	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	155260	155260	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43926908	43926908	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM3	389072	broad.mit.edu	37	2	208795744	208795744	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161139844	161139844	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161158002	161158002	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23695312	23695312	+	Missense_Mutation	SNP	G	A	A	rs146806568		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128816214	128816214	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145806427	145806427	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131865973	131865973	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131870132	131870132	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153039513	153039513	+	Missense_Mutation	SNP	G	T	T	rs146891755	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMF1	11243	broad.mit.edu	37	1	156183039	156183039	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76632645	76632645	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L4	5382	broad.mit.edu	37	7	66760680	66760680	+	RNA	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160221982	160221982	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA3	80339	broad.mit.edu	37	22	44342691	44342691	+	3'UTR	SNP	T	A	A	rs41278873	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7625548	7625548	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84563165	84563165	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT2	23275	broad.mit.edu	37	21	46703410	46703410	+	Missense_Mutation	SNP	C	A	A	rs73910608	byFrequency;by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2H	5437	broad.mit.edu	37	3	184082795	184082795	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2H	5437	broad.mit.edu	37	3	184084660	184084660	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121C	100101267	broad.mit.edu	37	7	75050746	75050746	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124532501	124532501	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14537826	14537826	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130869562	130869562	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287898	16287898	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7642305	7642305	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPID	5481	broad.mit.edu	37	4	159632048	159632048	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL2	23759	broad.mit.edu	37	22	22039174	22039176	+	In_Frame_Del	DEL	AGA	-	-	rs140641317		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94539978	94539978	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9B	84687	broad.mit.edu	37	17	48221106	48221106	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52729033	52729033	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1B	5519	broad.mit.edu	37	11	111614263	111614263	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	26212038	26212038	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6349667	6349667	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12919018	12919018	+	Missense_Mutation	SNP	C	A	A	rs150885452	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43231009	43231009	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM15	63977	broad.mit.edu	37	21	43291760	43291760	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527537	23527537	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX6	9588	broad.mit.edu	37	1	173457095	173457095	+	3'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62193473	62193473	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE3	4007	broad.mit.edu	37	X	49035627	49035627	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	590070	590070	+	Silent	SNP	G	C	C	rs140518538		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	624175	624175	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23848547	23848547	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24196453	24196453	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3701127	3701127	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138738769	138738769	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRT3	285368	broad.mit.edu	37	3	9991809	9991809	+	5'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS16	10279	broad.mit.edu	37	6	27216585	27216585	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460317	142460317	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460411	142460411	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79465437	79465437	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233356	43233356	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43708535	43708535	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43258366	43258366	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43259311	43259311	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB4	5692	broad.mit.edu	37	1	151373127	151373127	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD12	5718	broad.mit.edu	37	17	65340847	65340847	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD3	374308	broad.mit.edu	37	10	27700774	27700774	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89711767	89711767	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89711769	89711769	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71318473	71318473	+	3'UTR	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71418573	71418573	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER4	5734	broad.mit.edu	37	5	40692538	40692538	+	3'UTR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48140741	48140741	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125141116	125141116	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209271772	209271772	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209345847	209345847	+	Missense_Mutation	SNP	G	T	T	rs151296979		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120723086	120723086	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7064446	7064446	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44083587	44083587	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62118378	62118378	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55696802	55696802	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48185982	48185982	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157341681	157341681	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157414103	157414103	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691364	157691364	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157985049	157985049	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40747085	40747085	+	Silent	SNP	G	T	T	rs34284587		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40770818	40770818	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29651669	29651669	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121637934	121637934	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384753	52384753	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58383464	58383464	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100154820	100154820	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH2	84074	broad.mit.edu	37	17	74288578	74288578	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42972166	42972166	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37728847	37728856	+	Frame_Shift_Del	DEL	GTCTCCGAGG	-	-	rs75558150	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB41	347517	broad.mit.edu	37	X	69502146	69502146	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB43	339122	broad.mit.edu	37	3	128849008	128849008	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174726138	174726138	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66240233	66240233	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66273869	66273869	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTA	5875	broad.mit.edu	37	14	24738353	24738353	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46727024	46727024	+	Silent	SNP	G	A	A	rs58878309		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD9A	5883	broad.mit.edu	37	11	67161065	67161065	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4917651	4917651	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAF1	5894	broad.mit.edu	37	3	12626588	12626588	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANGAP1	5905	broad.mit.edu	37	22	41657438	41657438	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48145152	48145152	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22349558	22349558	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130970735	130970735	+	5'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1B	153020	broad.mit.edu	37	4	82369249	82369249	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF3	283349	broad.mit.edu	37	12	65088402	65088402	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155145395	155145395	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM45	129831	broad.mit.edu	37	2	178981037	178981037	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM9	23543	broad.mit.edu	37	22	36177704	36177704	+	Silent	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139181102	139181102	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDBP	7936	broad.mit.edu	37	6	31923094	31923094	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55559583	55559583	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384548	79384548	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79255422	79255422	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG4	83998	broad.mit.edu	37	1	120341036	120341037	+	Intron	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103130329	103130329	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103180972	103180972	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103302073	103302073	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8418093	8418093	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETNLB	84666	broad.mit.edu	37	3	108474748	108474748	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100052327	100052327	+	Silent	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111695285	111695285	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73649990	73649990	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN1	23180	broad.mit.edu	37	3	16358231	16358231	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109695410	109695410	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240986600	240986600	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227779021	227779021	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74473340	74473340	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90020724	90020724	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33487164	33487164	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12859164	12859164	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38982069	38982069	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152289847	152289847	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152322272	152322272	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152322735	152322735	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43383069	43383069	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93118589	93118589	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK3	11035	broad.mit.edu	37	14	24807533	24807533	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87042852	87042852	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE12	493901	broad.mit.edu	37	14	21058517	21058517	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE7	84659	broad.mit.edu	37	14	21511112	21511112	+	5'UTR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEH2A	10535	broad.mit.edu	37	19	12923878	12923878	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEH2A	10535	broad.mit.edu	37	19	12923894	12923894	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF111	54778	broad.mit.edu	37	15	59323058	59323058	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF123	63891	broad.mit.edu	37	3	49739887	49739887	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF138	51444	broad.mit.edu	37	18	29709131	29709131	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25341404	25341404	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1073450	1073450	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78331231	78331231	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124764058	124764058	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124764957	124764957	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124765005	124765005	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257434	77257434	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10473975	10473976	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3AL	9501	broad.mit.edu	37	17	69607	69607	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL32P3	132241	broad.mit.edu	37	3	129115205	129115205	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3	6122	broad.mit.edu	37	22	39714363	39714363	+	Intron	SNP	C	T	T	rs78882338		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35867091	35867091	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGC	64121	broad.mit.edu	37	1	39317235	39317235	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRH	10692	broad.mit.edu	37	4	110756484	110756484	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4132861	4132861	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4159367	4159367	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3	54700	broad.mit.edu	37	16	15165037	15165037	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1B	23076	broad.mit.edu	37	21	45096559	45096559	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108972928	108972928	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108995373	108995373	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTL1	388015	broad.mit.edu	37	14	101349423	101349423	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67718785	67718785	+	Splice_Site	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179023586	179023586	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237604834	237604834	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237663946	237663946	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237791358	237791358	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237893570	237893570	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947412	237947412	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947550	237947550	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988005	134988005	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174165	51174165	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174492	51174492	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130465632	130465632	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130465809	130465809	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130535394	130535395	+	Intron	DNP	CC	AG	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92732395	92732395	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92732470	92732470	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44368651	44368651	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44377228	44377228	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44392410	44392410	+	3'UTR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30L	79685	broad.mit.edu	37	5	153830579	153830579	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200245120	200245120	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9980644	9980644	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36018397	36018397	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	77134323	77134324	+	Intron	DNP	GG	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38766748	38766748	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166903468	166903468	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166168555	166168555	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166210846	166210846	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166229923	166229923	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165948857	165948857	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL1	57410	broad.mit.edu	37	11	65303778	65303778	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL1	57410	broad.mit.edu	37	11	65304157	65304157	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100676756	100676756	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC1	6382	broad.mit.edu	37	2	20402564	20402564	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHA	6389	broad.mit.edu	37	5	228396	228396	+	Missense_Mutation	SNP	G	C	C	rs1041946		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L1	6397	broad.mit.edu	37	17	75212739	75212739	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30862426	30862426	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177902465	177902465	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12206397	12206397	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169562818	169562818	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83634612	83634612	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83036465	83036465	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	83119341	83119341	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9337790	9337790	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48022844	48022844	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55929611	55929611	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT1	1731	broad.mit.edu	37	16	30392730	30392730	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56604506	56604506	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT7	989	broad.mit.edu	37	7	35912232	35912232	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT8	23176	broad.mit.edu	37	5	132100012	132100012	+	Missense_Mutation	SNP	C	A	A	rs76417071	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158571537	158571537	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61390485	61390485	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264336	61264336	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61570585	61570585	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61323236	61323236	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI1	5274	broad.mit.edu	37	3	167508117	167508117	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167183440	167183440	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERTAD2	9792	broad.mit.edu	37	2	64863326	64863326	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42618459	42618459	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB2	83852	broad.mit.edu	37	13	50062844	50062844	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29891116	29891117	+	Intron	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26746907	26746907	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS4	6429	broad.mit.edu	37	1	29476680	29476680	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTA2	389376	broad.mit.edu	37	6	30899730	30899730	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN3	81855	broad.mit.edu	37	10	102797064	102797064	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67091481	67091481	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67105415	67105415	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155934	67155934	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHF	90525	broad.mit.edu	37	15	45491056	45491056	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57623458	57623458	+	5'Flank	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOC2	8036	broad.mit.edu	37	10	112764372	112764372	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAH3	283514	broad.mit.edu	37	13	46358215	46358215	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50455139	50455139	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51960654	51960654	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51628974	51628974	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1616967	1616967	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164697235	164697235	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA2	348235	broad.mit.edu	37	17	57208721	57208721	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46233746	46233746	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160458757	160458757	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48539564	48539564	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56906304	56906304	+	Silent	SNP	C	A	A	rs78870559		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664168	44664168	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A2	9058	broad.mit.edu	37	17	26817894	26817894	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43314340	43314340	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43248289	43248289	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25771138	25771138	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15082552	15082552	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160677683	160677683	+	Missense_Mutation	SNP	A	G	G	rs8177509		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107408247	107408247	+	Silent	SNP	C	T	T	rs142908255	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107323753	107323753	+	Missense_Mutation	SNP	G	T	T	rs138816005	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107355824	107355824	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92301299	92301299	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92352886	92352886	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92381933	92381933	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86912205	86912205	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40158324	40158324	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC33A1	9197	broad.mit.edu	37	3	155571806	155571806	+	5'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A2	10568	broad.mit.edu	37	4	25664259	25664259	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A2	219855	broad.mit.edu	37	11	124950697	124950697	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140064334	140064334	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A2	54407	broad.mit.edu	37	12	46758407	46758407	+	Intron	DEL	A	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331687	18331687	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33706788	33706788	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57185132	57185132	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57193057	57193057	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31838834	31838834	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75684224	75684224	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76047832	76047832	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42335196	42335196	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A4	6527	broad.mit.edu	37	22	32650025	32650025	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101581208	101581208	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101584289	101584289	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48708153	48708153	+	Missense_Mutation	SNP	C	T	T	rs138580488		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20639565	20639565	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87229801	87229801	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23249156	23249156	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40405780	40405780	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655643	40655643	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40657458	40657458	+	5'Flank	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70633906	70633906	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	476783	476783	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	484838	484838	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135084373	135084373	+	Splice_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21370275	21370275	+	Intron	SNP	G	T	T	rs77112190		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20858877	20858877	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74913994	74913994	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617541	70617541	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718399	142718399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56583120	56583120	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72965329	72965329	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18839541	18839541	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	168910593	168910593	+	Splice_Site	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3A	26952	broad.mit.edu	37	4	71232741	71232741	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3B	10879	broad.mit.edu	37	4	71250145	71250145	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTN	6525	broad.mit.edu	37	22	31484540	31484540	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246493915	246493915	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10286935	10286935	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127721577	127721577	+	Intron	SNP	G	C	C	rs116267987	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNIP1	79753	broad.mit.edu	37	1	38019721	38019721	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25476225	25476225	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51465849	51465849	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX10	29887	broad.mit.edu	37	7	26400482	26400482	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX12	29934	broad.mit.edu	37	X	70280996	70280996	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130776630	130776630	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65620493	65620493	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158353193	158353193	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34923708	34923708	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186573905	186573905	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS3	10174	broad.mit.edu	37	8	22429318	22429318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108431126	108431126	+	Splice_Site	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106602650	106602650	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106675737	106675737	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106970900	106970900	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106970934	106970934	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121477578	121477578	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121483623	121483623	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPA17	53340	broad.mit.edu	37	11	124561532	124561532	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118570892	118570892	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101178126	101178126	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151046061	151046061	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172737191	172737191	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217822358	217822358	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52945942	52945942	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATC1	375686	broad.mit.edu	37	8	145095317	145095317	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64940262	64940262	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35753652	35753652	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35795874	35795874	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220326798	220326798	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16261133	16261133	+	Missense_Mutation	SNP	G	C	C	rs140025266	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHK1	8877	broad.mit.edu	37	17	74382929	74382929	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	229046399	229046399	+	5'Flank	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136448319	136448319	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY1	10252	broad.mit.edu	37	4	124322828	124322828	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653101	55653101	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158639388	158639388	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644338	158644338	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54852019	54852019	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54852032	54852032	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801738	45801738	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCRB4D	136853	broad.mit.edu	37	7	76019533	76019533	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64456851	64456851	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18L1	26039	broad.mit.edu	37	20	60754170	60754170	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17373458	17373458	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52544096	52544096	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104054169	104054169	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104125389	104125389	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36570495	36570495	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152992139	152992139	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152992141	152992142	+	Intron	DNP	TC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191865767	191865767	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11IP	114790	broad.mit.edu	37	2	220478856	220478856	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK25	10494	broad.mit.edu	37	2	242439726	242439726	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23775440	23775440	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134916819	134916819	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57234644	57234644	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57234648	57234649	+	Intron	DNP	TG	AT	AT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31004637	31004637	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STYX	6815	broad.mit.edu	37	14	53223377	53223377	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70516997	70516997	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70541706	70541706	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1E1	6783	broad.mit.edu	37	4	70709782	70709783	+	Intron	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF6	6838	broad.mit.edu	37	9	136198874	136198874	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD3	203328	broad.mit.edu	37	9	95841860	95841860	+	Missense_Mutation	SNP	C	T	T	rs149501399	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138313080	138313080	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109309473	109309473	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109332670	109332671	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12224792	12224792	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152599233	152599233	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152686025	152686025	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152712315	152712315	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152809592	152809592	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64608873	64608873	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA3	10474	broad.mit.edu	37	3	9831304	9831304	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99707759	99707759	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118619031	118619031	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R14	50840	broad.mit.edu	37	12	11091741	11091741	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9629177	9629177	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R38	5726	broad.mit.edu	37	7	141672473	141672473	+	3'UTR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27788319	27788319	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27827131	27827131	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D13	54662	broad.mit.edu	37	9	131553833	131553833	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47569087	47569087	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100020826	100020826	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3C	414060	broad.mit.edu	37	17	34611297	34611297	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36365184	36365184	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75901997	75901997	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1X	6907	broad.mit.edu	37	X	9656355	9656355	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162272897	162272897	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427774	119427774	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427872	119427872	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85446331	85446331	+	3'UTR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52943067	52943067	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN2	6948	broad.mit.edu	37	22	31013404	31013407	+	Frame_Shift_Del	DEL	ACAG	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167794552	167794552	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD1	7003	broad.mit.edu	37	11	12883843	12883843	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50786602	50786602	+	5'UTR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55204706	55204706	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50696780	50696780	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51500371	51500371	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEB	7942	broad.mit.edu	37	6	41658482	41658482	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI	7035	broad.mit.edu	37	2	188331706	188331706	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177383	89177383	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44943063	44943063	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552791	43552791	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	367050	367050	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11633280	11633280	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137917723	137917723	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138169484	138169484	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD2	80745	broad.mit.edu	37	2	39993217	39993217	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPIN	54962	broad.mit.edu	37	15	66641611	66641611	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP3	27134	broad.mit.edu	37	19	3735930	3735930	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70342695	70342695	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR2	7097	broad.mit.edu	37	4	154624696	154624696	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476798	120476798	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12904107	12904107	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52263595	52263595	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMBIM6	7009	broad.mit.edu	37	12	50152087	50152087	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2592925	2592925	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19485682	19485682	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC7	79905	broad.mit.edu	37	16	19070736	19070736	+	Splice_Site	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO7	79613	broad.mit.edu	37	16	68901248	68901248	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM104	54868	broad.mit.edu	37	17	72786483	72786483	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106A	113277	broad.mit.edu	37	17	41369229	41369229	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44605102	44605102	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98409464	98409464	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60695109	60695109	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129822241	129822241	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130185164	130185164	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32964723	32964723	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM136	219902	broad.mit.edu	37	11	120201131	120201131	+	Silent	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM186	25880	broad.mit.edu	37	16	8889820	8889820	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762082	130762082	+	Missense_Mutation	SNP	C	A	A	rs149308469		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39B	55116	broad.mit.edu	37	1	32566053	32566053	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226054364	226054364	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77685076	77685076	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94811942	94811942	+	Missense_Mutation	SNP	T	C	C	rs138508720		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM69	51249	broad.mit.edu	37	1	46159475	46159475	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42511790	42511790	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD1	388364	broad.mit.edu	37	17	28656342	28656342	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29709830	29709830	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29786291	29786291	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29904592	29904592	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12251948	12251948	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170784354	170784354	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74819086	74819086	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO2	30000	broad.mit.edu	37	19	12812375	12812375	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128696140	128696140	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355449	175355449	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218713154	218713154	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47468168	47468168	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32052440	32052440	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP3B	8940	broad.mit.edu	37	22	22318788	22318788	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133368720	133368720	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579373	7579373	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52	7163	broad.mit.edu	37	8	80976781	80976781	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144245652	144245652	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSD1	23430	broad.mit.edu	37	16	1308351	1308351	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998311	10998311	+	RNA	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF6	7189	broad.mit.edu	37	11	36513966	36513966	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138266582	138266582	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM27	5987	broad.mit.edu	37	6	28876835	28876835	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119998088	119998088	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM56	81844	broad.mit.edu	37	7	100732027	100732027	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14369665	14369665	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT12	55039	broad.mit.edu	37	8	125463762	125463762	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54954144	54954144	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72948757	72948757	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72975646	72975646	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72983849	72983849	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135692429	135692429	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31324994	31324994	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77376931	77376931	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99634668	99634668	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130356638	130356638	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130364188	130364188	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768572	31768572	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3341899	3341899	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43227075	43227075	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39178668	39178668	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80732225	80732225	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80745021	80745021	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167755004	167755004	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL8	164714	broad.mit.edu	37	22	50479757	50479757	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179416962	179416962	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179438511	179438511	+	Silent	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179451145	179451145	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179455772	179455772	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179489195	179489195	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179495427	179495427	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179516297	179516297	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179544998	179544998	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179550425	179550425	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179641550	179641551	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179647345	179647345	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBAL3	79861	broad.mit.edu	37	10	5446826	5446826	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57599398	57599399	+	Missense_Mutation	DNP	CG	GT	GT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141071862	141071862	+	3'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135106116	135106116	+	Silent	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151537034	151537034	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP2	7288	broad.mit.edu	37	19	49387023	49387023	+	Silent	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15531375	15531375	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48097133	48097133	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC6	347736	broad.mit.edu	37	3	138025395	138025395	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44513509	44513509	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162535877	162535877	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68488607	68488607	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2	55833	broad.mit.edu	37	9	33927878	33927878	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2A	7319	broad.mit.edu	37	X	118716549	118716549	+	Splice_Site	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10211596	10211596	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5530285	5530285	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A4	54657	broad.mit.edu	37	2	234627526	234627526	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69875592	69875592	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34831773	34831773	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33496792	33496792	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176295410	176295410	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73050706	73050706	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167711390	167711390	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK1A	11045	broad.mit.edu	37	19	36159322	36159322	+	Intron	SNP	C	T	T	rs144559702	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK3B	80761	broad.mit.edu	37	7	76140183	76140183	+	Missense_Mutation	SNP	G	A	A	rs111500882	byFrequency	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRB	7381	broad.mit.edu	37	8	97247751	97247751	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43916853	43916853	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126219001	126219001	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215960159	215960159	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373152	216373152	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP17L2	377630	broad.mit.edu	37	8	11995480	11995480	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55549430	55549430	+	Intron	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17164020	17164020	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP51	158880	broad.mit.edu	37	X	55514858	55514858	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	129322777	129322777	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36812980	36812980	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37283990	37283991	+	IGR	DEL	AC	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43221492	43221492	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47729087	47729087	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94428962	94428962	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9765427	9765427	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121109340	121109340	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18932821	18932821	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	26027119	26027119	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4233126	4233126	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49088637	49088637	+	IGR	SNP	G	T	T	rs117971854	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103911	49103911	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227984	50227984	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459286	51459286	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51527680	51527680	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156350	55156350	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234525	55234525	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234833	55234833	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55884298	55884298	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58116652	58116652	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259467	59259468	+	IGR	DNP	CT	AG	AG			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62815030	62815030	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89487255	89487255	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89591664	89591664	+	IGR	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98437092	98437092	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410778	106410778	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106565476	106565479	+	IGR	DEL	CAAG	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15408649	15408649	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19242192	19242192	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44000771	44000771	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53548372	53548372	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60206047	60206047	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68947002	68947002	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187311	79187311	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187721	79187721	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	92924490	92924490	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97296316	97296316	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19466583	19466583	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19701978	19701978	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21668499	21668499	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23270557	23270557	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59325831	59325831	+	IGR	SNP	A	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64385350	64385350	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64549990	64549990	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65884935	65884935	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65885172	65885172	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362158	66362158	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83397732	83397732	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	100431784	100431784	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147589	20147589	+	IGR	DEL	A	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147828	20147828	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20647437	20647437	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21631958	21631958	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	50517905	50517905	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62298789	62298789	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62332016	62332016	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77101337	77101337	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	89577287	89577287	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84749909	84749909	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97094711	97094711	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178127	32178127	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32182808	32182808	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32616161	32616161	+	IGR	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33379943	33379943	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402174	33402174	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33527743	33527743	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33544404	33544404	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647258	33647258	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33768502	33768502	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34582484	34582484	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34723595	34723595	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727091	34727091	+	IGR	SNP	C	T	T	rs147518396	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727287	34727287	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	17287263	17287263	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21828405	21828405	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	41026046	41026046	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	48925899	48925899	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52555446	52555446	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60320402	60320402	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	65781457	65781457	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10725033	10725033	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12246679	12246679	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919775	13919775	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919965	13919965	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14377936	14377936	+	IGR	SNP	C	A	A	rs149959991	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232295	26232295	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5002764	5002764	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7135173	7135173	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75148973	75148973	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	8546529	8546529	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22500175	22500175	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29283743	29283743	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209694	55209694	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121245261	121245261	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903775	148903775	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149064056	149064056	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101797	149101797	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262400	149262400	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152716932	152716932	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157606204	157606204	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158389682	158389682	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158424887	158424887	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	15931072	15931072	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164325998	164325998	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168179969	168179969	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222641929	222641929	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	226626295	226626296	+	IGR	DNP	GG	TA	TA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233971802	233971802	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247991429	247991429	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	32890325	32890325	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41405512	41405512	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77166048	77166049	+	IGR	DNP	GG	TC	TC			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987028	79987028	+	IGR	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81564063	81564063	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96912684	96912684	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96912763	96912763	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10315245	10315245	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	31278536	31278536	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	44236567	44236567	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862956	10862956	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899777	10899777	+	IGR	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14823933	14823933	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31720490	31720490	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9865680	9865680	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123762	16123762	+	IGR	SNP	C	T	T	rs148364109		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389648	16389648	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17402509	17402509	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25733188	25733188	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30442328	30442328	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	41460453	41460453	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104110773	104110773	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117484257	117484257	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132381667	132381667	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383711	132383711	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384513	132384513	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659432	139659432	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067356	158067356	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162360079	162360079	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162361026	162361026	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162361120	162361120	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162362718	162362718	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168572393	168572393	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180265201	180265201	+	IGR	SNP	G	C	C	rs3749125		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737554	181737554	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194595323	194595323	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994742	194994742	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044690	210044690	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426825	81426825	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81427443	81427443	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91766534	91766534	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872864	91872864	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11933118	11933118	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145402581	145402581	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148703991	148703991	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874214	192874214	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	29129801	29129801	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	32676799	32676799	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	39323060	39323060	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73697516	73697516	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73697681	73697681	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75388082	75388082	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90257458	90257458	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98378480	98378480	+	IGR	SNP	C	A	A	rs138627766	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104494209	104494209	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111866416	111866416	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496679	118496679	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139544760	139544760	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145767637	145767637	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165864811	165864811	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182827058	182827058	+	IGR	DEL	C	-	-			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	62971515	62971515	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70261343	70261343	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70265417	70265417	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	8983231	8983231	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9431534	9431534	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117114697	117114697	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136193731	136193731	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144608745	144608745	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162843686	162843686	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180542623	180542623	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304884	20304884	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44113499	44113499	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7296442	7296442	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84760525	84760525	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845229	84845229	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100499107	100499107	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112687262	112687262	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113543726	113543726	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	144521842	144521842	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	166478633	166478633	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47720731	47720731	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50865418	50865418	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50880540	50880540	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50880862	50880862	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51275228	51275228	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57842351	57842351	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71318246	71318246	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774246	80774246	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80779296	80779296	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	101978038	101978038	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492403	10492403	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108635073	108635073	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132855310	132855310	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138089098	138089098	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138374233	138374233	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140698164	140698164	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	154897719	154897719	+	IGR	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	16624302	16624302	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21169512	21169512	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32511854	32511854	+	IGR	SNP	C	A	A	rs75299553		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36010768	36010768	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45860547	45860547	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46037221	46037221	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930545	53930545	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55780103	55780104	+	IGR	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56359035	56359035	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56428100	56428100	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56570071	56570071	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56636611	56636611	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665110	56665110	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665752	56665752	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217836	57217836	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032763	63032763	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6965424	6965424	+	IGR	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613166	84613166	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766664	9766664	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821811	111821811	+	IGR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13880645	13880645	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62115072	62115072	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66289844	66289844	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70899797	70899797	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73142377	73142377	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80484026	80484026	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81471675	81471675	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204504	83204504	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	116613003	116613003	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	138557893	138557893	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141032017	141032017	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31254175	31254175	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314498	43314498	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45377006	45377006	+	IGR	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66963587	66963587	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90760418	90760418	+	IGR	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863813	110863813	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	119866979	119866979	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134775502	134775503	+	IGR	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136524015	136524015	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139114991	139114991	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161789	139161789	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701889	145701889	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25212587	25212587	+	IGR	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26705879	26705879	+	IGR	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27535927	27535928	+	IGR	DNP	TC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65014115	65014115	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	73095055	73095055	+	IGR	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294781	89294781	+	IGR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368592	89368592	+	IGR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101194849	101194849	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82815951	82815966	+	Frame_Shift_Del	DEL	TAATTATGCCTGATAA	-	-	rs138840154		TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCL	7414	broad.mit.edu	37	10	75842254	75842254	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	36943632	36943632	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133033073	133033073	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79835952	79835952	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79955575	79955575	+	Intron	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS28	51160	broad.mit.edu	37	8	145650095	145650095	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38791935	38791935	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38937680	38937680	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6167018	6167018	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853507	70853507	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036265	71036265	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85639672	85639672	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85678286	85678286	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR13	64743	broad.mit.edu	37	X	48458941	48458941	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128477639	128477639	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118492583	118492583	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158716322	158716323	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241907652	241907652	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124132400	124132400	+	Silent	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDYHV1	55093	broad.mit.edu	37	8	124442343	124442343	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141424063	141424063	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF1	7456	broad.mit.edu	37	2	175440024	175440024	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228210557	228210557	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5B	81029	broad.mit.edu	37	12	1741803	1741803	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT9A	7483	broad.mit.edu	37	1	228109340	228109340	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32417981	32417981	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167833147	167833147	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	79245433	79245433	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31628596	31628596	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106557	168106557	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183440026	183440026	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345219	100345219	+	Missense_Mutation	SNP	C	A	A	rs147364349	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100395410	100395410	+	3'UTR	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB45	84878	broad.mit.edu	37	19	59028649	59028649	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC14	79683	broad.mit.edu	37	6	157963732	157963732	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC16	84287	broad.mit.edu	37	10	99213631	99213631	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145156310	145156311	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145162626	145162627	+	Intron	DNP	GG	CT	CT			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135669873	135669874	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77620383	77620383	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764324	77764324	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP30	22835	broad.mit.edu	37	19	38126484	38126484	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106801053	106801053	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106801185	106801185	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147106587	147106587	+	3'UTR	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIK1	284307	broad.mit.edu	37	19	58096448	58096448	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57290678	57290678	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81053264	81053264	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF100	163227	broad.mit.edu	37	19	21909902	21909902	+	Silent	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58570603	58570603	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219520858	219520858	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6976880	6976880	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	19990929	19990929	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22272135	22272135	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF333	84449	broad.mit.edu	37	19	14829857	14829857	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21552286	21552286	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72353080	72353080	+	Splice_Site	SNP	T	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178369899	178369899	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57199975	57199975	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22775074	22775074	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935936	30935936	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123982290	123982290	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208717	53208717	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF629	23361	broad.mit.edu	37	16	30794693	30794693	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91402967	91402967	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182027224	182027224	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF652	22834	broad.mit.edu	37	17	47376242	47376242	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63720657	63720657	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63720698	63720698	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF740	283337	broad.mit.edu	37	12	53579879	53579879	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF740	283337	broad.mit.edu	37	12	53581253	53581253	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF747	65988	broad.mit.edu	37	16	30544384	30544384	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF826	664701	broad.mit.edu	37	19	20592786	20592786	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57769383	57769383	+	Silent	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149547490	149547490	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23544297	23544297	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941892	22941892	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050952	238050952	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58565273	58565273	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187698691	187698691	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM7	125150	broad.mit.edu	37	17	15881310	15881310	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58120017	58120017	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	27568116	27568116	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46195611	46195611	+	5'Flank	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065689	55065689	+	RNA	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8048236	8048236	+	Silent	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19904163	19904163	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91577544	91577544	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15023226	15023226	+	Silent	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35037295	35037295	+	5'Flank	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5313203	5313203	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15871568	15871568	+	Intron	SNP	T	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9806730	9806730	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148889662	148889662	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237167695	237167695	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	56063760	56063760	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16255896	16255896	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16255910	16255910	+	5'Flank	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133066906	133066906	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133075222	133075222	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186671509	186671509	+	Intron	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186672480	186672480	+	Intron	SNP	C	A	A	rs138135058	by1000genomes	TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89156827	89156827	+	RNA	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89231942	89231942	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89247247	89247247	+	RNA	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442617	89442617	+	RNA	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90248912	90248912	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180547517	180547517	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69313209	69313209	+	5'UTR	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88813117	88813117	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118347582	118347582	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139094657	139094657	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142021194	142021194	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045769	142045770	+	Intron	DNP	CC	AA	AA			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142162242	142162242	+	Intron	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206614	142206614	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142242291	142242291	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142379123	142379123	+	Intron	SNP	C	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471533	142471533	+	Intron	SNP	G	C	C			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471791	142471791	+	Intron	SNP	C	A	A			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38393411	38393411	+	Intron	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65228337	65228337	+	Intron	SNP	A	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73150379	73150379	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676589	84676589	+	Intron	SNP	G	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100699055	100699055	+	RNA	SNP	A	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	76225767	76225767	+	Intron	SNP	T	G	G			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
