Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52595851	52595851	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66878079	66878079	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66925424	66925424	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169850327	169850327	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87035723	87035723	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195063225	195063225	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP2	23527	broad.mit.edu	37	3	195063241	195063241	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89212437	89212437	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20482505	20482505	+	Nonsense_Mutation	SNP	C	A	A	rs142316126		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127760135	127760135	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87762154	87762154	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106815883	106815883	+	RNA	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43945021	43945021	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84539716	84539716	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123044228	123044228	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123137357	123137357	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100125328	100125328	+	3'UTR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67372798	67372798	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK2	157	broad.mit.edu	37	22	26012819	26012819	+	Intron	SNP	C	T	T	rs139556944	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236502070	236502071	+	Intron	DEL	AG	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87065972	87065972	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50052697	50052697	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129272693	129272693	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134222956	134222956	+	Missense_Mutation	SNP	G	T	T	rs149850087		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134261847	134261847	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137789996	137789996	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38469436	38469436	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2A	279	broad.mit.edu	37	1	104160474	104160474	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114279001	114279001	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114294269	114294269	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5698896	5698896	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101352869	101352869	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40997144	40997144	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26790049	26790049	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40940040	40940040	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144421430	144421430	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43473996	43473996	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32582785	32582785	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155921420	155921420	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111898474	111898474	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69500067	69500067	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPRV1	151516	broad.mit.edu	37	2	70284862	70284862	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177036703	177036703	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119497182	119497182	+	Intron	SNP	C	A	A	rs114939979	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATE1	11101	broad.mit.edu	37	10	123650944	123650944	+	Intron	SNP	T	A	A	rs114534832	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH8	84913	broad.mit.edu	37	2	85992335	85992335	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11081298	11081298	+	Intron	SNP	A	G	G	rs78302590		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11081308	11081308	+	Intron	SNP	A	T	T	rs79256376		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102753976	102753976	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34182746	34182746	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A2	11118	broad.mit.edu	37	6	26370770	26370770	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf94	143678	broad.mit.edu	37	11	45928366	45928366	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112740211	112740211	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81259233	81259233	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf28	122525	broad.mit.edu	37	14	45369771	45369771	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf70	80262	broad.mit.edu	37	16	67168097	67168097	+	Silent	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56621484	56621484	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf57	79173	broad.mit.edu	37	19	13996797	13996797	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73844655	73844655	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf83	56918	broad.mit.edu	37	2	228476173	228476173	+	Silent	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf22	152065	broad.mit.edu	37	3	126272292	126272292	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192517357	192517357	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf79	152118	broad.mit.edu	37	3	153202422	153202422	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99729010	99729010	+	3'UTR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151917799	151917799	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58236708	58236708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708193	181708193	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201038378	201038378	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55085889	55085889	+	Intron	SNP	G	A	A	rs112060417	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062823	86062823	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48733807	48733807	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC114	93233	broad.mit.edu	37	19	48801477	48801477	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL20	6364	broad.mit.edu	37	2	228681922	228681922	+	3'UTR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL5	6352	broad.mit.edu	37	17	34199360	34199360	+	3'UTR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50053799	50053799	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73569700	73569700	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323011	31323011	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61760956	61760956	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61854758	61854758	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26905931	26905931	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM8	1088	broad.mit.edu	37	19	43097501	43097501	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17618883	17618883	+	3'UTR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122713858	122713858	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29251995	29251995	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120214777	120214777	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86957029	86957029	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74445432	74445432	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	139780043	139780043	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57758640	57758640	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57759112	57759112	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	6990108	6990108	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88238981	88238981	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72226650	72226650	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6265516	6265516	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87679272	87679272	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58572121	58572121	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41436291	41436291	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74334749	74334749	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99827596	99827596	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146818111	146818111	+	Silent	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147336343	147336343	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147880868	147880868	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125000026	125000026	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	106870997	106870997	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101802744	101802744	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70745809	70745809	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94057501	94057501	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139707044	139707044	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47422372	47422372	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175307073	175307074	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131261683	131261683	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE9	151835	broad.mit.edu	37	3	9758690	9758690	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211452942	211452942	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125590394	125590394	+	Intron	SNP	G	C	C	rs71474793		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197404113	197404113	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28735775	28735775	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5862927	5862927	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGS	1427	broad.mit.edu	37	3	186256671	186256671	+	Silent	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3257093	3257093	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11098731	11098731	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25043762	25043762	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148496483	148496483	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35944189	35944189	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf66	347487	broad.mit.edu	37	X	139038398	139038398	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105768118	105768118	+	3'UTR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57476947	57476947	+	Splice_Site	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90262462	90262462	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175743	159175743	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298905	125298905	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCK	1633	broad.mit.edu	37	4	71863875	71863875	+	Silent	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX52	11056	broad.mit.edu	37	17	35984347	35984347	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117266459	117266459	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14353595	14353595	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37617507	37617507	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124382375	124382375	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38866152	38866152	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11696813	11696813	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172292456	172292456	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111418396	111418396	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83846908	83846908	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162894882	162894882	+	Silent	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35223881	35223881	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29038273	29038273	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4705493	4705493	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25716037	25716037	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42930009	42930009	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140657119	140657119	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79403637	79403637	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100380643	100380643	+	Splice_Site	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132522304	132522304	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134967157	134967157	+	Splice_Site	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51854721	51854721	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAP2	64167	broad.mit.edu	37	5	96239250	96239250	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212589829	212589829	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76905572	76905572	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5729244	5729244	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108398907	108398907	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	65753507	65753507	+	Intron	SNP	G	A	A	rs78643016	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66104668	66104668	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157832	154157832	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM105A	54491	broad.mit.edu	37	5	14601519	14601519	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411301	63411301	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139187542	139187542	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89912230	89912230	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15331090	15331090	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM180A	389558	broad.mit.edu	37	7	135433137	135433137	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM20B	9917	broad.mit.edu	37	1	179012885	179012885	+	5'UTR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962649	34962649	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12082420	12082420	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12155716	12155716	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12237322	12237322	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12237324	12237324	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12403286	12403286	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12404543	12404543	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12404825	12404825	+	Intron	SNP	A	G	G	rs3989801		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163075644	163075644	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBL	2091	broad.mit.edu	37	19	40330629	40330629	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55396733	55396733	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157738454	157738454	+	Silent	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102915437	102915437	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123243279	123243279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60015627	60015627	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328290	152328290	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281902	152281902	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281970	152281970	+	Silent	SNP	G	T	T	rs149105551	byFrequency	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58116292	58116292	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ1	2302	broad.mit.edu	37	17	74134191	74134191	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114294037	114294037	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	51960187	51960188	+	Intron	DNP	TA	AT	AT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52194798	52194798	+	3'UTR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12276036	12276036	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318874	71318874	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47213261	47213261	+	Intron	SNP	T	C	C	rs113264388	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060352	46060352	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26581331	26581331	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101018250	101018250	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109069519	109069519	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCET2	257144	broad.mit.edu	37	3	111846713	111846713	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72631341	72631341	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42689086	42689086	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIN1	54826	broad.mit.edu	37	5	102444222	102444222	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69204659	69204659	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175580430	175580430	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRB	2743	broad.mit.edu	37	4	158041792	158041792	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLPH3	64083	broad.mit.edu	37	5	32126858	32126858	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794329	37794329	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176835414	176835414	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22449198	22449198	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87534206	87534206	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690496	94690496	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88695982	88695982	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657818	72657818	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUF1	60558	broad.mit.edu	37	4	44688028	44688028	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240016682	240016682	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73985886	73985886	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65214798	65214798	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427988	65427988	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42016975	42016975	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB2	3120	broad.mit.edu	37	6	32729391	32729391	+	Intron	SNP	G	T	T	rs142608686	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29944500	29944500	+	Intron	SNP	G	T	T	rs149053842	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1B	6928	broad.mit.edu	37	17	36059379	36059379	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER1	9456	broad.mit.edu	37	5	78752776	78752776	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193257	152193257	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST2	9956	broad.mit.edu	37	16	22844854	22844854	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA1	5654	broad.mit.edu	37	10	124249156	124249156	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA10	3446	broad.mit.edu	37	9	21206859	21206859	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA10	3446	broad.mit.edu	37	9	21206861	21206861	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP2	10644	broad.mit.edu	37	3	185414480	185414480	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117188927	117188927	+	Intron	SNP	G	A	A	rs144784443	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114245561	114245561	+	Intron	DEL	A	-	-	rs17095041		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113786663	113786663	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29472454	29472454	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29935735	29935735	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL2	8808	broad.mit.edu	37	2	102828581	102828581	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166904656	166904656	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120607779	120607779	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128615246	128615246	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30848603	30848603	+	5'UTR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182339745	182339745	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15561253	15561254	+	Intron	DNP	TC	CT	CT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15649500	15649500	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31309111	31309111	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7785098	7785098	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26492257	26492257	+	3'UTR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15487658	15487658	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124117372	124117372	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG3	170850	broad.mit.edu	37	2	42671148	42671148	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178488999	178488999	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73904438	73904438	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650431	142650431	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114233787	114233787	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154524536	154524536	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79749995	79749995	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24471289	24471289	+	Intron	SNP	C	T	T	rs114652569	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108298114	108298114	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17873668	17873668	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28057916	28057916	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200967546	200967546	+	Silent	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245848849	245848849	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245848860	245848860	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173735542	173735542	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39644564	39644564	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253488	32253488	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7055980	7055980	+	Intron	SNP	G	A	A	rs147657188	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136561575	136561575	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66074555	66074556	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51442961	51442961	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107290	55107290	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPK	643414	broad.mit.edu	37	10	90497582	90497582	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNA	4000	broad.mit.edu	37	1	156104971	156104971	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165182944	165182944	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133050	100133050	broad.mit.edu	37	5	99721195	99721195	+	Intron	SNP	G	A	A	rs141284576	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133669	100133669	broad.mit.edu	37	8	144077636	144077636	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94855787	94855787	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285768	285768	broad.mit.edu	37	6	1102098	1102098	+	5'Flank	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728855	728855	broad.mit.edu	37	1	149614738	149614738	+	Intron	SNP	C	T	T	rs76803539		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146502592	146502592	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82002234	82002234	+	Intron	SNP	A	G	G	rs115210610	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188327400	188327400	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141665553	141665553	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063225	170063225	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16B	90668	broad.mit.edu	37	14	24538410	24538410	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861612	52861613	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70494020	70494020	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTV1	84946	broad.mit.edu	37	6	144167209	144167209	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235973558	235973558	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30261234	30261234	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78496207	78496207	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21214934	21214934	+	Intron	SNP	G	C	C	rs36218908		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48241649	48241649	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94356767	94356767	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED28	80306	broad.mit.edu	37	4	17616422	17616422	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED7	9443	broad.mit.edu	37	5	156566062	156566062	+	Silent	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126676045	126676045	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28188269	28188269	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT3	4248	broad.mit.edu	37	22	39884033	39884033	+	Silent	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168349199	168349199	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102667963	102667963	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76262571	76262571	+	5'Flank	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFS	10588	broad.mit.edu	37	15	80167000	80167000	+	Intron	DEL	A	-	-	rs71453468		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11175493	11175493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237013866	237013866	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9085343	9085343	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77661808	77661808	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH10	4628	broad.mit.edu	37	17	8526461	8526461	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10400674	10400674	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10416884	10416884	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26168281	26168281	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72193500	72193500	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48634240	48634240	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANOS3	342977	broad.mit.edu	37	19	13991251	13991251	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20099035	20099035	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36188729	36188729	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145214857	145214857	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145251035	145251035	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16904449	16904449	+	Intron	SNP	G	A	A	rs80258438		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145100672	145100672	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145111361	145111361	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145114673	145114673	+	Intron	SNP	G	A	A	rs112458770		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19338661	19338661	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158438169	158438169	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	132998521	132998521	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84035364	84035364	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204966249	204966249	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77732642	77732642	+	3'UTR	SNP	G	C	C	rs116897063	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52486794	52486794	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124979487	124979487	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63830988	63830988	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7067906	7067906	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588857	247588857	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOSTRIN	115677	broad.mit.edu	37	2	169713332	169713332	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32184944	32184944	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100928838	100928838	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A3	8013	broad.mit.edu	37	9	102596526	102596526	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG4	145957	broad.mit.edu	37	15	76243174	76243174	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206590765	206590765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80164064	80164064	+	Silent	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80176219	80176219	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131781542	131781542	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131926689	131926690	+	Intron	DNP	CC	TT	TT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87325897	87325897	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131752435	131752435	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128707237	128707238	+	Intron	INS	-	A	A	rs11440167		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIT3	170392	broad.mit.edu	37	10	74658669	74658669	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133057854	133057854	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F2P	26184	broad.mit.edu	37	16	3266034	3266034	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248128876	248128876	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138483	248138483	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367065	248367065	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436331	248436331	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58126571	58126571	+	5'Flank	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761734	55761734	+	Missense_Mutation	SNP	T	A	A	rs140060499	byFrequency	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983440	97983440	+	Silent	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C1	26664	broad.mit.edu	37	19	14910178	14910178	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL11	114885	broad.mit.edu	37	3	125250663	125250664	+	Intron	DNP	CC	AT	AT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179250197	179250197	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76904574	76904574	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26693553	26693553	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555341	17555341	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALMD	54873	broad.mit.edu	37	1	100154979	100154979	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35455829	35455829	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX5	5079	broad.mit.edu	37	9	36882059	36882059	+	Silent	SNP	G	A	A	rs144574685	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67296795	67296795	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138640	56138640	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56140518	56140518	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6	10016	broad.mit.edu	37	5	290896	290896	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165806002	165806002	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178524776	178524776	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10571737	10571737	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66837971	66837971	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144866543	144866543	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76627406	76627406	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31848204	31848204	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77378447	77378447	+	Splice_Site	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58348252	58348252	+	Intron	SNP	G	C	C	rs150484938	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85685740	85685740	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIF1	80119	broad.mit.edu	37	15	65110438	65110438	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204393646	204393647	+	3'UTR	DNP	CA	AG	AG			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204415206	204415206	+	Silent	SNP	C	G	G	rs115140514	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142836317	142836317	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94316459	94316459	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81157418	81157418	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51514062	51514062	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9391819	9391819	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9400527	9400527	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95927480	95927480	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM3	389072	broad.mit.edu	37	2	208866199	208866199	+	Silent	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131925726	131925726	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124510999	124510999	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19559036	19559036	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23803432	23803432	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82564320	82564320	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57327689	57327690	+	Intron	INS	-	A	A	rs142591900	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57404489	57404489	+	Intron	SNP	G	A	A	rs111838745		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	169999060	169999060	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48689457	48689457	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME2	5721	broad.mit.edu	37	14	24614789	24614789	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99031021	99031021	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8376867	8376867	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8518184	8518184	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44070747	44070747	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QDPR	5860	broad.mit.edu	37	4	17510852	17510852	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122250793	122250793	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82750819	82750819	+	Intron	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB33A	9363	broad.mit.edu	37	X	129306262	129306262	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87882916	87882916	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6A	5870	broad.mit.edu	37	11	73388763	73388763	+	3'UTR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76254798	76254798	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1G	353091	broad.mit.edu	37	6	150240955	150240955	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34818995	34818995	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109369414	109369414	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131351168	131351168	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS3	27303	broad.mit.edu	37	3	29453095	29453095	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86572587	86572587	+	3'UTR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192150409	192150409	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOH	399	broad.mit.edu	37	4	40196975	40196975	+	5'Flank	SNP	T	C	C	rs57184118		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7396953	7396953	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182555970	182555970	+	5'UTR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF180	285671	broad.mit.edu	37	5	63553344	63553344	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78934012	78934012	+	Intron	SNP	C	T	T	rs71899188		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP2	79871	broad.mit.edu	37	1	92846455	92846455	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83419510	83419510	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4197386	4197386	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33962577	33962577	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33988396	33988396	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55231118	55231118	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35559122	35559122	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166125285	166125285	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52184304	52184304	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167151251	167151251	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43617230	43617230	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110454962	110454962	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERP2	387923	broad.mit.edu	37	13	44953886	44953886	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95029772	95029772	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN2	83667	broad.mit.edu	37	1	28599220	28599220	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47098912	47098912	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCB	6443	broad.mit.edu	37	4	52899847	52899847	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72633294	72633294	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70670212	70670212	+	Intron	SNP	G	A	A	rs138407245	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70803432	70803432	+	Intron	SNP	G	A	A	rs78330727	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13297311	13297311	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAE	54414	broad.mit.edu	37	11	124535206	124535206	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113300170	113300170	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748533	164748533	+	Silent	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A1	6556	broad.mit.edu	37	2	219251378	219251378	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247994	43247994	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99336994	99336994	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35298234	35298234	+	Intron	SNP	C	A	A	rs116382328	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A1	6580	broad.mit.edu	37	6	160557015	160557015	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A4	6583	broad.mit.edu	37	5	131667365	131667365	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40458331	40458331	+	Intron	DEL	T	-	-	rs35540200		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	71023484	71023484	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18292099	18292099	+	Splice_Site	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74557753	74557754	+	Intron	INS	-	T	T	rs139880064		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A4	6545	broad.mit.edu	37	22	21384605	21384605	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173502880	173502880	+	Silent	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A7	84679	broad.mit.edu	37	X	46591668	46591668	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585416	70585416	+	Silent	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585515	70585515	+	Silent	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112361781	112361781	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70490074	70490074	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1349414	1349414	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130780051	130780051	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24017225	24017225	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24565124	24565124	+	Intron	SNP	T	C	C	rs78786738	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP4	6671	broad.mit.edu	37	7	21527378	21527383	+	Intron	DEL	TGATGG	-	-	rs111895818		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52961111	52961111	+	3'UTR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55911012	55911012	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596608	158596608	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612347	158612347	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158655168	158655168	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP72	6731	broad.mit.edu	37	4	57357634	57357634	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX2	27286	broad.mit.edu	37	X	99920696	99920696	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSR1	6745	broad.mit.edu	37	6	7290123	7290128	+	In_Frame_Del	DEL	TCTGTG	-	-	rs138203075		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48053732	48053732	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76774481	76774481	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77074290	77074290	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC5	81849	broad.mit.edu	37	1	77510321	77510321	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116637754	116637754	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74080750	74080750	+	Intron	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33687050	33687050	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191898461	191898461	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK33	65975	broad.mit.edu	37	11	8513817	8513817	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK33	65975	broad.mit.edu	37	11	8513851	8513851	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74477424	74477424	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUB1	10923	broad.mit.edu	37	5	32591623	32591623	+	Intron	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUB1	10923	broad.mit.edu	37	5	32591625	32591625	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67925067	67925067	+	3'UTR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113231346	113231346	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152631798	152631798	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33545234	33545234	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85409015	85409015	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75296690	75296690	+	Intron	DEL	A	-	-	rs113561222		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160020027	160020027	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61391823	61391823	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R42	353164	broad.mit.edu	37	12	11338720	11338720	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72312367	72312367	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX21	30009	broad.mit.edu	37	17	45821478	45821478	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139565518	139565518	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139565522	139565522	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96178830	96178830	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65275158	65275158	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTB	6975	broad.mit.edu	37	10	114044408	114044408	+	Missense_Mutation	SNP	C	A	A	rs146576556		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27169644	27169644	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20837598	20837598	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50686809	50686809	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP2	83591	broad.mit.edu	37	12	72068146	72068146	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128151040	128151040	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137990703	137990703	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43777628	43777628	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60650587	60650587	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120466837	120466837	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75446850	75446850	+	Intron	SNP	A	G	G	rs79317704		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20063897	20063897	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32956216	32956216	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM182	130827	broad.mit.edu	37	2	103414410	103414410	+	Silent	SNP	C	T	T	rs140175654	byFrequency	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15405278	15405278	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM20	159371	broad.mit.edu	37	10	95691149	95691149	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74874966	74874966	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578555	7578556	+	Splice_Site	DNP	CT	AA	AA			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42398464	42398464	+	Intron	SNP	G	A	A	rs147905235	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30131594	30131594	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM35	23087	broad.mit.edu	37	8	27151106	27151106	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6472762	6472762	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035787	55035787	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116632198	116632198	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130363912	130363912	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768661	31768661	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179442618	179442618	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179446579	179446579	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179587009	179587009	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179636129	179636129	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179644622	179644622	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBBP5	643224	broad.mit.edu	37	9	141045164	141045164	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15542126	15542126	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19484211	19484211	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346367	70346367	+	Silent	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70361152	70361152	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35965369	35965369	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT8	7368	broad.mit.edu	37	4	115585300	115585300	+	Intron	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35588838	35588838	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215931888	215931888	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10664273	10664273	+	IGR	SNP	A	G	G	rs75160575	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111440749	111440749	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	12107766	12107766	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	135464278	135464278	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	33697177	33697177	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38285538	38285538	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006380	39006380	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42640908	42640908	+	IGR	DEL	G	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42643706	42643706	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42648212	42648212	+	IGR	SNP	C	A	A	rs80138688		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42648231	42648231	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42667759	42667759	+	IGR	SNP	A	G	G	rs144142117	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54172659	54172659	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	58902493	58902496	+	IGR	DEL	ACAC	-	-	rs34340473		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	59438050	59438050	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	78571973	78571973	+	IGR	SNP	C	T	T	rs78980489	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	87160965	87160965	+	IGR	SNP	T	C	C	rs114472866	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94967563	94967563	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	100537586	100537586	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104075517	104075517	+	IGR	SNP	A	G	G	rs77767837	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	10811774	10811774	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115599147	115599147	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124330759	124330759	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127906322	127906322	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131200274	131200274	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	42010411	42010411	+	IGR	SNP	A	G	G	rs1828897		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4263615	4263616	+	IGR	DNP	CC	AA	AA			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55979166	55979166	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6094954	6094954	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71214854	71214854	+	IGR	SNP	G	A	A	rs115521134	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71888674	71888674	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79723798	79723798	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80125800	80125800	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89499984	89499984	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114155536	114155536	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127549253	127549253	+	IGR	SNP	A	G	G	rs112930217		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127851110	127851110	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128319823	128319823	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19242501	19242501	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30209621	30209621	+	IGR	SNP	C	A	A	rs142723303	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37877083	37877084	+	IGR	INS	-	A	A	rs76079002		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3870795	3870795	+	IGR	SNP	T	C	C	rs116706182	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	46482981	46482984	+	IGR	DEL	TTCT	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55805704	55805704	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58413246	58413246	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	72547448	72547448	+	IGR	SNP	A	G	G	rs141447955	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9280697	9280697	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94422100	94422100	+	IGR	SNP	G	T	T	rs75483188	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110340737	110340737	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	43737149	43737149	+	IGR	SNP	C	T	T	rs78298938		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52087750	52087750	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52087758	52087758	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57064281	57064281	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68949449	68949449	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86927779	86927779	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137327	20137327	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20228527	20228527	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20749467	20749467	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26020563	26020563	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30576993	30576993	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40531771	40531771	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43733804	43733804	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59365698	59365698	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83900866	83900866	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96321278	96321278	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20393619	20393619	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31712441	31712441	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	54941052	54941052	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60099306	60099306	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84753008	84753008	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87798731	87798731	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96985002	96985002	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	99101330	99101330	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13561445	13561445	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18192322	18192322	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25066156	25066156	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32094250	32094250	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629839	33629839	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34327666	34327666	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34570094	34570094	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52789074	52789074	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	53044260	53044260	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66147730	66147730	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79998120	79998120	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8213655	8213655	+	IGR	SNP	C	G	G	rs144014244	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25286243	25286243	+	IGR	SNP	G	A	A	rs142543436	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25303210	25303210	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	49018957	49018957	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	6252977	6252977	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78483416	78483416	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38669137	38669137	+	IGR	SNP	A	G	G	rs140006445	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45310589	45310589	+	IGR	SNP	A	G	G	rs74419186	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49115043	49115043	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58611660	58611660	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75694009	75694009	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76775206	76775206	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16363481	16363481	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688003	23688003	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32195893	32195893	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	45036630	45036630	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9130700	9130700	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9130704	9130704	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107087312	107087312	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116623325	116623325	+	IGR	SNP	C	T	T	rs147813579	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120647533	120647533	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120801511	120801511	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142545954	142545954	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143422588	143422588	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143516547	143516547	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143540282	143540282	+	IGR	SNP	A	G	G	rs9629353		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146472794	146472794	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148872206	148872206	+	IGR	SNP	G	A	A	rs149882137	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149091692	149091692	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163861155	163861155	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	169883687	169883687	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191865205	191865205	+	IGR	DEL	A	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	216659112	216659112	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	239266243	239266243	+	IGR	SNP	C	T	T	rs113001307	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242752162	242752162	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	246839034	246839034	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31070459	31070459	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31323117	31323117	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4924374	4924374	+	IGR	SNP	G	A	A	rs140548444	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68125896	68125896	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89793334	89793334	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10869120	10869120	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361939	12361939	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24366046	24366047	+	IGR	DEL	TG	-	-	rs72223468		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26114576	26114576	+	IGR	SNP	C	A	A	rs116046075	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29592921	29592921	+	IGR	SNP	T	C	C	rs79083419	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29593233	29593233	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4490223	4490223	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4552173	4552174	+	IGR	DNP	TG	GT	GT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47094239	47094239	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6822550	6822550	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	8031872	8031872	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10429186	10429186	+	IGR	SNP	A	G	G	rs4116095		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10441727	10441727	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10442767	10442767	+	IGR	SNP	C	T	T	rs141029474	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10720885	10720885	+	IGR	SNP	A	G	G	rs147317074		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10890439	10890439	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11127925	11127925	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11143013	11143013	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11155464	11155464	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14916848	14916848	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617758	20617758	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26660594	26660596	+	IGR	DEL	GTT	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9576746	9576746	+	IGR	SNP	C	A	A	rs146953695	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9857282	9857282	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16955494	16955494	+	IGR	SNP	T	C	C	rs80292769		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17374213	17374213	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34826471	34826471	+	IGR	SNP	C	T	T	rs114718621	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39199140	39199140	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105819694	105819694	+	IGR	SNP	G	A	A	rs79058579	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108831922	108831923	+	IGR	DEL	AC	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116852838	116852838	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128006141	128006141	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132125124	132125124	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132773435	132773435	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13317656	13317656	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	135540916	135540916	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14323451	14323451	+	IGR	SNP	G	C	C	rs79342930	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143612809	143612809	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	153740445	153740446	+	IGR	DNP	GG	TT	TT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156822461	156822461	+	IGR	SNP	C	G	G	rs138479333	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162357539	162357539	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17114155	17114155	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	18034296	18034296	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186872664	186872664	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188107987	188107987	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188430360	188430360	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	19615347	19615347	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209769902	209769902	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21064004	21064004	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229640833	229640833	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35461804	35461805	+	IGR	DNP	CA	TG	TG			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83967748	83967748	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91784818	91784818	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92068181	92068181	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92081524	92081524	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	106386221	106386221	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109648969	109648969	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109985132	109985132	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380568	122380568	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125453230	125453230	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129886927	129886927	+	IGR	SNP	C	G	G	rs143049371	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135408538	135408538	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142895405	142895405	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15187183	15187183	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	154724679	154724679	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172878686	172878686	+	IGR	SNP	C	G	G	rs139690132	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187074656	187074656	+	IGR	SNP	G	T	T	rs76745571	byFrequency;by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187582386	187582386	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	32130838	32130838	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36333859	36333859	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	44742564	44742564	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	571036	571036	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72394443	72394443	+	IGR	SNP	C	T	T	rs113200161	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75913355	75913355	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	78513896	78513896	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	78550354	78550354	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88271259	88271259	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88271269	88271269	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94226296	94226296	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068532	96068532	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96496628	96496628	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104477395	104477395	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109175436	109175436	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125116542	125116542	+	IGR	SNP	A	G	G	rs147047080	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128484344	128484344	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128484346	128484346	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135620600	135620600	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145072318	145072318	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168780939	168780939	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168780968	168780968	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171526310	171526310	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17312942	17312942	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179830116	179830117	+	IGR	DEL	TA	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18838825	18838825	+	IGR	SNP	T	C	C	rs143600076	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24710449	24710449	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27082261	27082262	+	IGR	INS	-	CTT	CTT	rs137920964	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27453	27453	+	IGR	SNP	T	A	A	rs149429939	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45736846	45736846	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49512263	49512263	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	56966055	56966055	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68266594	68266595	+	IGR	INS	-	A	A	rs112070146		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70280632	70280632	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	95117593	95117593	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	102735411	102735411	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10941445	10941446	+	IGR	DNP	GG	TT	TT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	129181157	129181157	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	131579739	131579739	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451953	15451953	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154676734	154676734	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154867999	154867999	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15494028	15494028	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15979614	15979614	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16058623	16058623	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16234555	16234555	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16235244	16235244	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164876304	164876304	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173756590	173756590	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173813788	173813788	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20106026	20106026	+	IGR	DEL	T	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25474574	25474574	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29600824	29600824	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31043024	31043024	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32944465	32944465	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34108185	34108185	+	IGR	SNP	T	A	A	rs117569075	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4586578	4586578	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5646225	5646225	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	83819829	83819829	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84289490	84289491	+	IGR	INS	-	GA	GA	rs139906886	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87462631	87462631	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97107340	97107340	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97361580	97361580	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104750115	104750115	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112938728	112938728	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115888849	115888849	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126032398	126032398	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	141774443	141774443	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150336329	150336329	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150336335	150336335	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19634810	19634810	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27705824	27705824	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	2826888	2826888	+	IGR	SNP	C	G	G	rs149531379	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57568824	57568824	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57568827	57568827	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57728663	57728663	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58582359	58582359	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	61902252	61902252	+	IGR	SNP	A	G	G	rs144110191	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63572056	63572056	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63589411	63589411	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66506159	66506159	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67486504	67486504	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	75629604	75629604	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86467599	86467599	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	89180258	89180258	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	89260686	89260686	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100396771	100396771	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109562459	109562459	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	115064250	115064250	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118275794	118275794	+	IGR	DEL	A	-	-	rs34685894		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121802127	121802127	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	127127024	127127024	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	13293763	13293763	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	134412152	134412152	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136398872	136398872	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145667661	145667661	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21260675	21260675	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25277575	25277575	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	34937909	34937909	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52961378	52961378	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53189527	53189527	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57299926	57299926	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57377807	57377807	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61066633	61066633	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61078562	61078562	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61088301	61088301	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61099884	61099884	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032531	63032531	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	66920474	66920474	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67826417	67826417	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93962300	93962300	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102105194	102105194	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	103537676	103537676	+	IGR	SNP	C	T	T	rs79336635	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114586298	114586298	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116855007	116855007	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127421805	127421805	+	IGR	SNP	G	A	A	rs144206385	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130451795	130451795	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130655978	130655978	+	IGR	DEL	T	-	-			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130692051	130692051	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	135398551	135398551	+	IGR	SNP	G	A	A	rs114434527	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136132918	136132918	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	28109998	28109998	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35954934	35954934	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	46338	46338	+	IGR	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	46840719	46840719	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5334462	5334462	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60294511	60294511	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7771398	7771398	+	IGR	SNP	G	A	A	rs146791619	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	80012470	80012470	+	IGR	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86396193	86396193	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86753273	86753273	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86753994	86753994	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88718220	88718220	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94351389	94351389	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658478	94658478	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	114637914	114637914	+	IGR	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120365091	120365091	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122355653	122355653	+	IGR	SNP	G	A	A	rs79126228	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122371532	122371532	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12824754	12824754	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16244275	16244275	+	IGR	SNP	A	C	C	rs71325957		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21183751	21183751	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27609525	27609525	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314215	43314215	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65979921	65979921	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68378664	68378664	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417917	68417917	+	IGR	SNP	A	T	T	rs66853417		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68419847	68419847	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68421469	68421469	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68424615	68424615	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84052310	84052310	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101034546	101034546	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101765300	101765300	+	IGR	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140914344	140914344	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144264900	144264900	+	IGR	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144264904	144264904	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145075792	145075792	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	18884189	18884189	+	IGR	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25427747	25427747	+	IGR	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27551349	27551349	+	IGR	SNP	A	G	G	rs149050075		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36518147	36518147	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36813025	36813025	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	42353913	42353913	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	42512984	42512984	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52640735	52640735	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	54759944	54759944	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75280360	75280360	+	IGR	SNP	A	G	G	rs149359051	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79827415	79827415	+	IGR	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80845638	80845638	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479966	92479966	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	94754694	94754694	+	IGR	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13469191	13469191	+	IGR	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59008832	59008832	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59009739	59009739	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59014437	59014437	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59019125	59019125	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59020231	59020231	+	IGR	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59020808	59020808	+	IGR	SNP	T	C	C	rs139763089		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9945182	9945182	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9964313	9964313	+	IGR	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101197962	101197962	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48238661	48238661	+	Silent	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38857280	38857280	+	Intron	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61026770	61026770	+	Silent	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241904971	241904971	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO5	57510	broad.mit.edu	37	6	43496918	43496918	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC4	7518	broad.mit.edu	37	5	82373276	82373276	+	5'Flank	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183446631	183446632	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1L	92092	broad.mit.edu	37	7	138713396	138713396	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145155914	145155914	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616704	77616704	+	Silent	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617862	77617862	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64167568	64167568	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64425875	64425875	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039643	31039643	+	Silent	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	68359	68359	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40784553	40784553	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF682	91120	broad.mit.edu	37	19	20117104	20117104	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81564665	81564665	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57529296	57529296	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	299280	299280	+	5'Flank	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF85	7639	broad.mit.edu	37	19	21132799	21132799	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053264	238053264	+	Silent	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856948	19856948	+	RNA	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20618429	20618429	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	75592360	75592360	+	5'Flank	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97316158	97316158	+	5'Flank	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070602	32070602	+	RNA	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5342036	5342036	+	Intron	SNP	A	C	C	rs147680962	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	90161556	90161556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	90269166	90269166	+	Intron	SNP	G	C	C	rs148258792		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39865947	39865947	+	Intron	SNP	T	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39810073	39810074	+	Intron	INS	-	CA	CA	rs138162232	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142636763	142636763	+	Intron	SNP	G	C	C	rs111520962		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142649227	142649227	+	Intron	SNP	G	A	A	rs146310575	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142791582	142791582	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142794327	142794327	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143147726	143147726	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146791038	146791038	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179557380	179557380	+	5'Flank	SNP	G	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99555718	99555718	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10459223	10459223	+	Intron	SNP	C	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326735	89326735	+	RNA	SNP	A	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89986364	89986364	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177610354	177610354	+	Intron	SNP	G	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195437554	195437554	+	Intron	SNP	T	C	C	rs77904679		TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	64831568	64831568	+	Intron	SNP	G	A	A	rs141852167	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67955560	67955560	+	Intron	SNP	C	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67955565	67955565	+	Intron	SNP	T	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20858296	20858296	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3484068	3484068	+	Intron	SNP	A	G	G			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8400262	8400262	+	Intron	SNP	C	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	147182798	147182798	+	Intron	SNP	T	C	C	rs138803892	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106236669	106236669	+	Intron	SNP	A	C	C			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161864	142161864	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142176801	142176801	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12443595	12443595	+	Intron	SNP	T	C	C	rs145248782	by1000genomes	TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128369407	128369407	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65291870	65291870	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109039883	109039883	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78938198	78938198	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17140453	17140453	+	Intron	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
