Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7629729	7629729	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARSD1	80755	broad.mit.edu	37	17	41106915	41106915	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107589148	107589148	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48244989	48244989	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48162431	48162431	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554719	150554719	+	Silent	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123342571	123342571	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39607136	39607136	+	Intron	DEL	A	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106733559	106733559	+	RNA	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107057494	107057494	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5146599	5146599	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100673398	100673398	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956583	128956583	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18636108	18636108	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100197757	100197757	+	3'UTR	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105414449	105414449	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP14	158798	broad.mit.edu	37	X	119037159	119037159	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45891251	45891251	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38516385	38516385	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41552962	41552962	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114269409	114269409	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	62023496	62023496	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851554	14851554	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2M1	1173	broad.mit.edu	37	3	183897989	183897989	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29398932	29398932	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26800771	26800771	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40824085	40824085	+	Intron	SNP	C	T	T	rs147543620	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APEX2	27301	broad.mit.edu	37	X	55029451	55029451	+	Missense_Mutation	SNP	C	A	A	rs75862529		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA1	335	broad.mit.edu	37	11	116707679	116707679	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58556404	58556404	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27462251	27462251	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115350954	115350954	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141059290	141059290	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24964411	24964411	+	Intron	SNP	C	A	A	rs144428074	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63852047	63852047	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL8A	127829	broad.mit.edu	37	1	202103614	202103614	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27556474	27556474	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002623	3002623	+	Missense_Mutation	SNP	G	T	T	rs148764513		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2951409	2951409	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983744	176983744	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47527626	47527626	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119500677	119500677	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349361	69349361	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215593379	215593379	+	3'UTR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171501462	171501462	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BATF2	116071	broad.mit.edu	37	11	64756651	64756651	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160546765	160546765	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15543335	15543335	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLA2	552900	broad.mit.edu	37	16	29645164	29645164	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW1	9689	broad.mit.edu	37	2	201683537	201683537	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40020230	40020230	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf70	341346	broad.mit.edu	37	12	27651566	27651566	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95903363	95903363	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf10	25941	broad.mit.edu	37	18	34385477	34385477	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44237426	44237426	+	Intron	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75107166	75107166	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55111082	55111082	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf36	80111	broad.mit.edu	37	3	133647605	133647605	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113505306	113505306	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5	727	broad.mit.edu	37	9	123776384	123776384	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073068	74073068	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf97	80129	broad.mit.edu	37	6	151936917	151936917	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69552813	69552813	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf50	375759	broad.mit.edu	37	9	132382763	132382763	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf82	79886	broad.mit.edu	37	9	26842781	26842781	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39L	81617	broad.mit.edu	37	13	49957151	49957151	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54496139	54496139	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93065484	93065484	+	Splice_Site	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD10	29775	broad.mit.edu	37	22	37893099	37893099	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197594195	197594195	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC22	28952	broad.mit.edu	37	X	49106213	49106214	+	Intron	DNP	CC	AG	AG			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74497246	74497246	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157804581	157804581	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48209380	48209380	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42EP1	11135	broad.mit.edu	37	22	37964470	37964470	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC45	8318	broad.mit.edu	37	22	19502215	19502215	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981349	64981349	+	3'UTR	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473547	19473547	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1588717	1588717	+	Intron	SNP	G	A	A	rs61774959	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20649696	20649696	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46780524	46780524	+	Missense_Mutation	SNP	C	A	A	rs149238203		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214837204	214837204	+	3'UTR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50833700	50833700	+	Splice_Site	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40118274	40118274	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700194	136700194	+	Silent	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST15	51363	broad.mit.edu	37	10	125780989	125780989	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154508243	154508243	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154508244	154508244	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150690460	150690460	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75830910	75830910	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75840460	75840460	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105819578	105819578	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109784494	109784494	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110817048	110817048	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70944245	70944245	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	346516	346516	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211480961	211480961	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5868302	5868302	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAC1	55118	broad.mit.edu	37	10	99661210	99661210	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGN	155051	broad.mit.edu	37	7	151135181	151135181	+	Silent	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2	1437	broad.mit.edu	37	5	131409603	131409603	+	Silent	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645811	4645811	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSE	1510	broad.mit.edu	37	1	206320422	206320422	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16990535	16990535	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL1	8454	broad.mit.edu	37	7	148481085	148481085	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237490078	237490078	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35985704	35985704	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15791312	15791312	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16640098	16640098	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45410235	45410235	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50595820	50595820	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118572496	118572496	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX55	57696	broad.mit.edu	37	12	124097858	124097858	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA1B	728358	broad.mit.edu	37	8	6873990	6873990	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197704956	197704956	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185997925	185997925	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX16	8449	broad.mit.edu	37	6	30624976	30624976	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32591628	32591628	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32614063	32614063	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116573229	116573229	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116593992	116593992	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102902556	102902556	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74751023	74751023	+	Intron	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28609407	28609407	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117303888	117303888	+	Silent	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56506674	56506675	+	Intron	INS	-	TTCC	TTCC			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167086710	167086710	+	Missense_Mutation	SNP	C	A	A	rs146625016	byFrequency	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183978895	183978895	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB7	84455	broad.mit.edu	37	1	63999765	63999765	+	Splice_Site	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2S3	1968	broad.mit.edu	37	X	24078375	24078375	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL3	80237	broad.mit.edu	37	15	44067862	44067862	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107514510	107514510	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP3	55140	broad.mit.edu	37	8	28015992	28015992	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMD	2010	broad.mit.edu	37	X	153609469	153609469	+	Missense_Mutation	SNP	G	T	T	rs141732118		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27303041	27303041	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120629664	120629664	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132014711	132014711	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTHD1	150350	broad.mit.edu	37	22	40216867	40216867	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAP1	51752	broad.mit.edu	37	5	96130966	96130966	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50732305	50732305	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA3	2140	broad.mit.edu	37	1	28319944	28319944	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66013965	66013965	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57419833	57419833	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190234280	190234280	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11991287	11991287	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCC	2176	broad.mit.edu	37	9	98054987	98054987	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161479887	161479887	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95528453	95528453	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72710650	72710650	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKTN	2218	broad.mit.edu	37	9	108377491	108377491	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286011	152286011	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89103938	89103938	+	RNA	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147084864	147084864	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216285363	216285363	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172070576	172070576	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89391963	89391963	+	5'Flank	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXE1	2304	broad.mit.edu	37	9	100617383	100617383	+	3'UTR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29624058	29624058	+	5'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT6	2528	broad.mit.edu	37	19	5831491	5831491	+	3'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46042821	46042821	+	3'UTR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27271912	27271912	+	Missense_Mutation	SNP	G	T	T	rs79497756		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171687701	171687701	+	Silent	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155208062	155208062	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34120697	34120697	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCSH	2653	broad.mit.edu	37	16	81121309	81121309	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46184989	46184989	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA9	81025	broad.mit.edu	37	1	39340384	39340384	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA9	81025	broad.mit.edu	37	1	39341674	39341674	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTSCR2	29997	broad.mit.edu	37	19	48260234	48260234	+	Intron	SNP	A	T	T	rs889143	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155753967	155753967	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142729338	142729338	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30968955	30968955	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47440723	47440723	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658394	72658394	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H19	283120	broad.mit.edu	37	11	2017262	2017262	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48665048	48665048	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41038742	41038742	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41065625	41065625	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBCH	26275	broad.mit.edu	37	2	191175535	191175535	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3J	8356	broad.mit.edu	37	6	27861000	27861000	+	5'Flank	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186022872	186022872	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS2ST1	9653	broad.mit.edu	37	1	87511802	87511802	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13338714	13338714	+	RNA	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTN1	3346	broad.mit.edu	37	4	70921171	70921174	+	Intron	DEL	TCTC	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183776413	183776413	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53560897	53560897	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148579523	148579523	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27441334	27441334	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSM1	3642	broad.mit.edu	37	20	20349775	20349775	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12957004	12957004	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107976487	107976487	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107978335	107978335	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2749503	2749503	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7763666	7763666	+	Missense_Mutation	SNP	C	T	T	rs144713735		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZALD1	81621	broad.mit.edu	37	10	102824352	102824352	+	Missense_Mutation	SNP	G	T	T	rs36116329	byFrequency;by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40332734	40332734	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123128593	123128593	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24834654	24834654	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95508758	95508758	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1671	85379	broad.mit.edu	37	22	25575364	25575364	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1967	57805	broad.mit.edu	37	8	22463258	22463258	+	5'UTR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73962891	73962891	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17898352	17898352	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39735196	39735196	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901864	51901864	+	Silent	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173703539	173703539	+	Intron	DEL	A	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA3	3839	broad.mit.edu	37	13	50280167	50280167	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52646311	52646311	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153130024	153130024	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250580	129250580	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP2	3920	broad.mit.edu	37	X	119576232	119576232	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107416	55107416	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMK1	3984	broad.mit.edu	37	7	73535051	73535051	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197701401	197701401	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146481	146481	broad.mit.edu	37	16	34713866	34713866	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132258937	132258937	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7154792	7154792	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441089	441089	broad.mit.edu	37	5	79647182	79647182	+	RNA	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644172	644172	broad.mit.edu	37	17	43679183	43679183	+	3'UTR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645332	645332	broad.mit.edu	37	11	67565443	67565443	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50379758	50379758	+	RNA	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22517149	22517149	+	Intron	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR4	2846	broad.mit.edu	37	X	78010311	78010311	+	5'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51022505	51022505	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26211857	26211857	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51640246	51640246	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75649284	75649284	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGIX	79917	broad.mit.edu	37	X	49021003	49021003	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128083187	128083187	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE2	10982	broad.mit.edu	37	18	32720352	32720352	+	3'UTR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110143	165110143	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82045204	82045204	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTS1	28985	broad.mit.edu	37	X	119744788	119744788	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168833655	168833655	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70342079	70342079	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70347043	70347043	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED14	9282	broad.mit.edu	37	X	40572356	40572356	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141740024	141740024	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519A2	574500	broad.mit.edu	37	19	54264556	54264556	+	5'Flank	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLKL	197259	broad.mit.edu	37	16	74729467	74729467	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23306131	23306131	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL3	25843	broad.mit.edu	37	2	198412993	198412993	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50580512	50580512	+	Silent	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13150447	13150448	+	Intron	INS	-	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41956498	41956498	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64958325	64958325	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149902342	149902342	+	Missense_Mutation	SNP	C	T	T	rs145659444	byFrequency	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63526191	63526191	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124626900	124626900	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100681801	100681801	+	Silent	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1017909	1017909	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3229155	3229155	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16703317	16703317	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26164635	26164635	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12642628	12642628	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ1	58529	broad.mit.edu	37	10	75394386	75394386	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACA	4666	broad.mit.edu	37	12	57110315	57110315	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19735193	19735193	+	5'UTR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19970595	19970595	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144824381	144824381	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144824396	144824396	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152426796	152426796	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46128958	46128959	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB1	4790	broad.mit.edu	37	4	103517299	103517299	+	Silent	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN3	54413	broad.mit.edu	37	X	70389605	70389605	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120611908	120611908	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34263367	34263367	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115423195	115423195	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2940123	2940123	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT13	25961	broad.mit.edu	37	10	74879877	74879877	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56866268	56866268	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123697634	123697634	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203467770	203467770	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159283909	159283909	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248099980	248099980	+	5'Flank	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22333100	22333100	+	Intron	SNP	G	T	T	rs145157294	by1000genomes	TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023456	6023456	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579435	55579435	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6M1	390261	broad.mit.edu	37	11	123676277	123676277	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL11	114885	broad.mit.edu	37	3	125257138	125257138	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21819151	21819151	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89505590	89505590	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25449497	25449497	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226576294	226576294	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150840817	150840817	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91066150	91066150	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67799571	67799571	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140725827	140725827	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF1	84759	broad.mit.edu	37	2	74734045	74734045	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31864647	31864647	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGRMC1	10857	broad.mit.edu	37	X	118370574	118370574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35088992	35088992	+	3'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8789784	8789784	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIM2	11040	broad.mit.edu	37	X	48771550	48771550	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47988007	47988007	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75672862	75672862	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK2	26499	broad.mit.edu	37	14	67862037	67862038	+	Intron	INS	-	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK2	10769	broad.mit.edu	37	5	57751609	57751609	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72157612	72157612	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNP	4860	broad.mit.edu	37	14	20942825	20942825	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50906152	50906152	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE4	56655	broad.mit.edu	37	2	75187431	75187431	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89865208	89865209	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79741441	79741441	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14543225	14543225	+	5'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16256609	16256609	+	3'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPA1	5464	broad.mit.edu	37	10	71963053	71963053	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIE	10450	broad.mit.edu	37	1	40207434	40207434	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIE	10450	broad.mit.edu	37	1	40207573	40207573	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170470922	170470925	+	Intron	DEL	TTTG	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R2	5535	broad.mit.edu	37	9	104356628	104356628	+	3'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42854161	42854161	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIMA1	145270	broad.mit.edu	37	14	94203551	94203551	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA2	5563	broad.mit.edu	37	1	57170209	57170209	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53564527	53564527	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53893506	53893506	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR19	284338	broad.mit.edu	37	19	42813664	42813664	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTER	9317	broad.mit.edu	37	10	16528718	16528718	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH	5741	broad.mit.edu	37	11	13513995	13513995	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44069399	44069399	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15702194	15702194	+	Intron	DEL	T	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PWP1	11137	broad.mit.edu	37	12	108086464	108086464	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAC2	5880	broad.mit.edu	37	22	37627429	37627429	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51C	5889	broad.mit.edu	37	17	56810040	56810040	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48941648	48941648	+	Nonsense_Mutation	SNP	C	T	T	rs121913300		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48383953	48383953	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312722	79312722	+	Missense_Mutation	SNP	C	A	A	rs141167987		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385627	79385627	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117240577	117240577	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72818766	72818766	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152318776	152318776	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104581160	104581160	+	Intron	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73803249	73803249	+	3'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROGDI	79641	broad.mit.edu	37	16	4851175	4851175	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	60907032	60907032	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORC	6097	broad.mit.edu	37	1	151789563	151789563	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38129066	38129066	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26898443	26898443	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57261339	57261339	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237620086	237620086	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34072642	34072642	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A13	6284	broad.mit.edu	37	1	153591323	153591323	+	3'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50408809	50408809	+	Silent	SNP	C	A	A	rs141479802		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS2	54938	broad.mit.edu	37	19	39421424	39421424	+	5'UTR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18278317	18278317	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102286656	102286656	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9318642	9318643	+	Intron	INS	-	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48058726	48058726	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94930931	94930931	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26690555	26690555	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGRL	6451	broad.mit.edu	37	X	80552722	80552722	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM3	57619	broad.mit.edu	37	4	77675663	77675663	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1517678	1517678	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159923714	159923714	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A6	345274	broad.mit.edu	37	4	87746812	87746812	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A1	6556	broad.mit.edu	37	2	219255992	219255992	+	Silent	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44676787	44676787	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122787417	122787417	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50818821	50818821	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64366232	64366232	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A1	6580	broad.mit.edu	37	6	160551313	160551313	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85461673	85461673	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32445602	32445602	+	Silent	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A1	10559	broad.mit.edu	37	6	88218324	88218324	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61510329	61510329	+	Intron	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC46A3	283537	broad.mit.edu	37	13	29285090	29285090	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108608719	108608719	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20905513	20905513	+	3'UTR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142716995	142716995	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLK	9748	broad.mit.edu	37	10	105752422	105752422	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67473513	67473513	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17949974	17949974	+	Intron	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPX	23676	broad.mit.edu	37	X	21755846	21755846	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88408090	88408090	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX3	6658	broad.mit.edu	37	X	139586817	139586818	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231307844	231307844	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118579413	118579413	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337068	144337068	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK14	408187	broad.mit.edu	37	5	147550669	147550669	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41019462	41019462	+	Splice_Site	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38063048	38063048	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54694095	54694095	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52661666	52661666	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32C	282974	broad.mit.edu	37	10	134137916	134137916	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36483072	36483072	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT2B1	6820	broad.mit.edu	37	19	49055445	49055445	+	5'UTR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152560552	152560552	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64487950	64487950	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB3	257397	broad.mit.edu	37	X	30877604	30877604	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13561718	13561718	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D24	57465	broad.mit.edu	37	16	2546726	2546726	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67402588	67402588	+	Missense_Mutation	SNP	G	A	A	rs147388176		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30699884	30699884	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30700551	30700551	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133475542	133475542	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151820329	151820329	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM17B	10245	broad.mit.edu	37	X	48754090	48754090	+	Silent	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394896	164394896	+	5'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM47	83604	broad.mit.edu	37	X	34675059	34675059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90A	646658	broad.mit.edu	37	14	74876544	74876544	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP1	7141	broad.mit.edu	37	2	217724210	217724210	+	3'UTR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L2	7165	broad.mit.edu	37	20	62514218	62514218	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144245755	144245755	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209946492	209946492	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC4	51399	broad.mit.edu	37	11	118889791	118889791	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141310603	141310603	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67039426	67039426	+	5'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM71	131405	broad.mit.edu	37	3	32933252	32933252	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	904345	904345	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234915401	234915401	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130356550	130356550	+	Silent	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL13	440307	broad.mit.edu	37	15	90794645	90794645	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179447076	179447076	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	93941	93941	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22848330	22848330	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34790899	34790899	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58469206	58469206	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP40	55230	broad.mit.edu	37	2	234405289	234405289	+	Intron	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144999406	144999406	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113258258	113258258	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131930459	131930459	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42767373	42767373	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64514851	64514851	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	110697193	110697193	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114826186	114826186	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134857495	134857495	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15009418	15009418	+	IGR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49013123	49013123	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483722	51483722	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55111747	55111747	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58117050	58117050	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59666212	59666212	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6016256	6016256	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7805866	7805866	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79699519	79699519	+	IGR	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	121545187	121545187	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40842476	40842477	+	IGR	INS	-	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58788545	58788545	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19747022	19747022	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73610965	73610965	+	IGR	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476081	19476081	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31130126	31130126	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21388168	21388168	+	IGR	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489570	32489570	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490115	32490115	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33630248	33630248	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48752760	48752760	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	32857643	32857643	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12056922	12056922	+	IGR	DEL	C	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29305076	29305076	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37723974	37723974	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	14962823	14962823	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20990110	20990111	+	IGR	INS	-	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24014584	24014584	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7731352	7731352	+	IGR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111550546	111550546	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158746306	158746306	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	57085076	57085076	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15135818	15135818	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349534	132349534	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71282480	71282480	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423522	81423522	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424056	81424056	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92118563	92118563	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125454101	125454101	+	IGR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132106726	132106726	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	156432811	156432811	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194711835	194711835	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87680787	87680787	+	IGR	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88367114	88367114	+	IGR	DEL	A	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	113659776	113659776	+	IGR	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825672	28825672	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3891954	3891954	+	IGR	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	99662061	99662061	+	IGR	SNP	T	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	122571950	122571950	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	68150645	68150645	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86180096	86180096	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	90475758	90475758	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109648642	109648642	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25273713	25273713	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41220544	41220544	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44482765	44482765	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112378098	112378098	+	IGR	SNP	T	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118591359	118591359	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152142771	152142771	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55003179	55003179	+	IGR	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372546	56372546	+	IGR	SNP	C	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33580089	33580089	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84703167	84703167	+	IGR	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134326811	134326811	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48076750	48076750	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48136869	48136869	+	IGR	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55987891	55987891	+	IGR	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65276377	65276377	+	IGR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294103	89294103	+	IGR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77902399	77902399	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79929509	79929509	+	Silent	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150082472	150082472	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65242472	65242472	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119575446	119575446	+	3'UTR	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70800688	70800688	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY2	115825	broad.mit.edu	37	13	52277841	52277841	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55493492	55493492	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241964606	241964606	+	3'UTR	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27614072	27614072	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT5B	81029	broad.mit.edu	37	12	1754922	1754922	+	Intron	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT6	7475	broad.mit.edu	37	2	219736487	219736487	+	Silent	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIAP	331	broad.mit.edu	37	X	123019558	123019558	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168098276	168098276	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128902567	128902567	+	3'UTR	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183432945	183432945	+	5'UTR	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF4	84272	broad.mit.edu	37	2	32523203	32523203	+	Intron	DEL	G	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100389676	100389676	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100389686	100389686	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB32	27033	broad.mit.edu	37	19	36207448	36207448	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203798755	203798755	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64722832	64722832	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC6	64429	broad.mit.edu	37	10	114194168	114194168	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68249317	68249317	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64415065	64415065	+	Intron	SNP	A	G	G			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF410	57862	broad.mit.edu	37	14	74390003	74390003	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53344722	53344722	+	Silent	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71591198	71591198	+	Silent	SNP	A	T	T	rs141783047		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91402869	91402869	+	Intron	SNP	T	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56973727	56973727	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23926607	23926607	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57770709	57770709	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20362911	20362911	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20682400	20682400	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32607230	32607230	+	Intron	SNP	C	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070557	32070557	+	RNA	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78290711	78290711	+	Intron	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89378260	89378260	+	Intron	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90048170	90048170	+	Intron	SNP	C	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013252	142013252	+	Intron	SNP	A	C	C			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69440109	69440109	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48163861	48163861	+	Intron	SNP	A	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
