Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AASS	10157	broad.mit.edu	37	7	121766286	121766286	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685435	20685435	+	5'Flank	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20762554	20762554	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17464436	17464436	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39994248	39994248	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179112279	179112279	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35691601	35691601	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35766360	35766360	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132056351	132056351	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185687190	185687190	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTB	60	broad.mit.edu	37	7	5568402	5568402	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158622312	158622312	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175897288	175897288	+	Silent	SNP	C	G	G	rs114696296	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175899307	175899307	+	3'UTR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106307427	106307427	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444992	106444992	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106631537	106631537	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41220467	41220467	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7414680	7414680	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112043035	112043035	+	Nonsense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12340269	12340269	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	981920	981920	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878079	32878079	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AICDA	57379	broad.mit.edu	37	12	8758239	8758239	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106991259	106991259	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832529	4832529	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5038112	5038112	+	Intron	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137792171	137792172	+	Silent	DNP	TC	AG	AG			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH18A1	5832	broad.mit.edu	37	10	97370991	97370991	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMH	268	broad.mit.edu	37	19	2249448	2249448	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38530513	38530513	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61832818	61832818	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54445526	54445526	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54534412	54534412	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67965185	67965186	+	Intron	INS	-	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37442662	37442662	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197985972	197985972	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55412547	55412547	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66585528	66585528	+	RNA	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115202418	115202421	+	Frame_Shift_Del	DEL	AAGA	-	-	rs80118146		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35224745	35224745	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119013825	119013825	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3B	10620	broad.mit.edu	37	15	74836314	74836316	+	In_Frame_Del	DEL	CAA	-	-	rs8043032	byFrequency;by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23257169	23257169	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX1	51309	broad.mit.edu	37	X	100807894	100807894	+	5'UTR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27538411	27538411	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC3	57561	broad.mit.edu	37	5	90669504	90669504	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPDH	554235	broad.mit.edu	37	19	51016102	51016103	+	Intron	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194154401	194154401	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42482021	42482021	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130656409	130656409	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40642418	40642418	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1H	51606	broad.mit.edu	37	8	54714430	54714430	+	Silent	SNP	G	A	A	rs139364478		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50235517	50235517	+	Silent	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76763965	76763965	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28845407	28845407	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7	6314	broad.mit.edu	37	3	63981400	63981400	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70236556	70236556	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT1	27087	broad.mit.edu	37	11	134252846	134252846	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9L	283149	broad.mit.edu	37	11	118771514	118771514	+	Missense_Mutation	SNP	C	A	A	rs150094487		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70818153	70818153	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLNK	29760	broad.mit.edu	37	10	97969624	97969624	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD3	8019	broad.mit.edu	37	9	136899808	136899808	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9785450	9785450	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1459521	1459521	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A2	11118	broad.mit.edu	37	6	26370529	26370529	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180377285	180377285	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118084607	118084607	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122817536	122817536	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101951914	101951914	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34638362	34638362	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf48	56985	broad.mit.edu	37	17	10608747	10608747	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf57	124989	broad.mit.edu	37	17	45507065	45507065	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf18	147685	broad.mit.edu	37	19	58477923	58477923	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL3	389941	broad.mit.edu	37	10	16556392	16556392	+	3'UTR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179425864	179425864	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75139260	75139260	+	5'UTR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf160	140706	broad.mit.edu	37	20	30602764	30602764	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf70	85395	broad.mit.edu	37	21	46363592	46363592	+	Intron	DEL	A	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295088	29295088	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPB	725	broad.mit.edu	37	1	207271381	207271381	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175735630	175735630	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97677084	97677084	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121605039	121605039	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073210	74073210	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf57	135154	broad.mit.edu	37	6	71298356	71298357	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28A	51622	broad.mit.edu	37	7	5963388	5963388	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15578885	15578885	+	Silent	SNP	C	A	A	rs34754760	byFrequency;by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA14	23632	broad.mit.edu	37	1	150234455	150234455	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA8	767	broad.mit.edu	37	8	61121321	61121321	+	3'UTR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAB39L	81617	broad.mit.edu	37	13	49918472	49918472	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2742881	2742881	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54905661	54905661	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18823253	18823253	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54444923	54444924	+	Intron	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7339643	7339643	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48735020	48735020	+	Missense_Mutation	SNP	T	C	C	rs146319637		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90572233	90572234	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105400605	105400605	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66564739	66564739	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57734232	57734232	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130900723	130900723	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169030907	169030907	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNDBP1	23582	broad.mit.edu	37	15	43486931	43486931	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158326285	158326285	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67563198	67563198	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60776389	60776389	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137527079	137527079	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA3	83461	broad.mit.edu	37	12	6959654	6959654	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73270112	73270112	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26890073	26890073	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37646907	37646908	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40041692	40041692	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	35145565	35145565	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERK	64781	broad.mit.edu	37	22	47116947	47116947	+	Intron	SNP	C	A	A	rs116840095	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55900000	55900000	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49539928	49539928	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146747843	146747843	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21895652	21895652	+	Intron	SNP	A	G	G	rs12885609		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKA	1119	broad.mit.edu	37	11	67833423	67833423	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM1	1128	broad.mit.edu	37	11	62677090	62677090	+	3'UTR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120214157	120214157	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170613432	170613432	+	Silent	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN5	1184	broad.mit.edu	37	X	49840388	49840388	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKB	1188	broad.mit.edu	37	1	16375653	16375653	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC6A	93978	broad.mit.edu	37	12	8612384	8612385	+	Intron	DEL	TG	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95696400	95696400	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN5	1203	broad.mit.edu	37	13	77570114	77570114	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57758217	57758217	+	Intron	DEL	C	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN1	1264	broad.mit.edu	37	19	11657313	11657313	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY2	10330	broad.mit.edu	37	12	56708901	56708901	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3084066	3084066	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914688	147914688	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46067470	46067470	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33156855	33156855	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101788262	101788262	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105811939	105811939	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7559679	7559679	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47418255	47418255	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160268767	160268767	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160275308	160275308	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148559606	148559606	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69263298	69263298	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211447431	211447431	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211515049	211515049	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137567363	137567363	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L2	64764	broad.mit.edu	37	7	137600571	137600571	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75924633	75924633	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84906837	84906837	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1317310	1317310	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1325341	1325341	+	RNA	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1325460	1325460	+	RNA	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAD	51380	broad.mit.edu	37	12	53563881	53563881	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1413472	1413472	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34128333	34128333	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113253965	113253965	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9L	128821	broad.mit.edu	37	20	23546737	23546737	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSE	1510	broad.mit.edu	37	1	206327587	206327587	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16989184	16989184	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17061814	17061814	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17089512	17089512	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C18	1562	broad.mit.edu	37	10	96443609	96443609	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96541656	96541656	+	Missense_Mutation	SNP	G	A	A	rs72558185		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47279668	47279668	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117824950	117824950	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162745571	162745571	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15758456	15758456	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169336592	169336592	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169169232	169169232	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126641232	126641232	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100646424	100646424	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14217622	14217622	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42784849	42784849	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137308271	137308271	+	Silent	SNP	A	G	G	rs112061731		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182836207	182836207	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	13356859	13356859	+	Missense_Mutation	SNP	G	T	T	rs149776829		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245835	84245835	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170597953	170597953	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLST	1743	broad.mit.edu	37	14	75365238	75365238	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172966302	172966302	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124378843	124378844	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	36003604	36003604	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52426819	52426819	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7705165	7705165	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13894780	13894780	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196605668	196605668	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11608469	11608469	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230453149	230453149	+	Missense_Mutation	SNP	C	A	A	rs139114799		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101716274	101716274	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111368372	111368372	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	340074	340074	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPRX	503834	broad.mit.edu	37	19	54139992	54139992	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56350220	56350220	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP7	1849	broad.mit.edu	37	3	52087929	52087929	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57669876	57669876	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4711545	4711545	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25902344	25902344	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21560098	21560098	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172534392	172534392	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68836236	68836237	+	Frame_Shift_Ins	INS	-	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHHADH	1962	broad.mit.edu	37	3	184910072	184910072	+	Frame_Shift_Del	DEL	C	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E	1977	broad.mit.edu	37	4	99812280	99812280	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EME1	146956	broad.mit.edu	37	17	48453005	48453005	+	Frame_Shift_Del	DEL	C	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101200605	101200605	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14856931	14856931	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD2	954	broad.mit.edu	37	9	139945864	139945864	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101445742	101445742	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5488977	5488977	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L5	57669	broad.mit.edu	37	2	120776812	120776812	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89521835	89521835	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22902781	22902781	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESR2	2100	broad.mit.edu	37	14	64726975	64726975	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5747075	5747075	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66115212	66115212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6248564	6248564	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197030094	197030094	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57318978	57318978	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82439309	82439309	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113A	64773	broad.mit.edu	37	20	2819264	2819264	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154A	158297	broad.mit.edu	37	9	18941806	18941806	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118969934	118969934	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM183B	340286	broad.mit.edu	37	7	38725603	38725603	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67575922	67575922	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM8A1	51439	broad.mit.edu	37	6	17602966	17602966	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14862910	14862910	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45970490	45970490	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936565	15936565	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO11	80204	broad.mit.edu	37	2	48040230	48040230	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO39	162517	broad.mit.edu	37	17	6683889	6683889	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO8	26269	broad.mit.edu	37	4	175162417	175162417	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137774413	137774413	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1B	10116	broad.mit.edu	37	15	68583378	68583378	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192125779	192125779	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123310986	123310986	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84608828	84608828	+	Missense_Mutation	SNP	C	T	T	rs139613817	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128481051	128481051	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240492752	240492752	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216284104	216284104	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216284112	216284112	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49618894	49618894	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49684359	49684359	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172096132	172096132	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB2	442425	broad.mit.edu	37	9	79634737	79634737	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO3	2309	broad.mit.edu	37	6	108985209	108985209	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79360062	79360062	+	Silent	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79440334	79440337	+	Intron	DEL	TAAG	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79455668	79455668	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48566058	48566058	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32869204	32869204	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127235632	127235632	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABARAPL1	23710	broad.mit.edu	37	12	10374401	10374401	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976211	46976211	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27188545	27188545	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580443	161580443	+	3'UTR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26562572	26562572	+	Frame_Shift_Del	DEL	G	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	898403	898403	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA1	2623	broad.mit.edu	37	X	48650964	48650964	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163000563	163000563	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72631409	72631409	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75275351	75275351	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117849209	117849209	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42465800	42465800	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150437875	150437875	+	Intron	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102962446	102962446	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUD2	2747	broad.mit.edu	37	X	120181414	120181414	+	5'Flank	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155735336	155735336	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORAB	92344	broad.mit.edu	37	1	170521505	170521505	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN1	11321	broad.mit.edu	37	2	27855515	27855515	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR132	29933	broad.mit.edu	37	14	105518574	105518574	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131439012	131439012	+	Missense_Mutation	SNP	T	A	A	rs144264048		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043226	20043226	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87898668	87898668	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13716171	13716171	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121182855	121182855	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27802749	27802749	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26505811	26505811	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5290652	5290652	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45645554	45645554	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73945385	73945385	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43048962	43048962	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12122960	12122960	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185834871	185834871	+	Splice_Site	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185984418	185984418	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186064444	186064444	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54448708	54448708	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS1	3257	broad.mit.edu	37	10	100203101	100203101	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18330609	18330609	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152188299	152188299	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152191001	152191001	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152191909	152191909	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122930584	122930584	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53585707	53585707	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBSP	3381	broad.mit.edu	37	4	88732418	88732418	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM3	3385	broad.mit.edu	37	19	10445249	10445249	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L1	122509	broad.mit.edu	37	14	94568260	94568260	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI35	3430	broad.mit.edu	37	17	41166314	41166314	+	Nonstop_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65678177	65678177	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23509712	23509712	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151166370	151166370	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130412660	130412660	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113738817	113738817	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155227421	155227421	+	5'UTR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMT	10989	broad.mit.edu	37	2	86378641	86378641	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPAD1	54928	broad.mit.edu	37	8	57878924	57878924	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80B	83444	broad.mit.edu	37	2	74682700	74682700	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227659915	227659915	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3600678	3600678	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISG20L2	81875	broad.mit.edu	37	1	156697502	156697502	+	5'UTR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31429545	31429545	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46326735	46326735	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52816082	52816082	+	Splice_Site	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7786869	7786869	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156673184	156673184	+	Intron	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPK1	3705	broad.mit.edu	37	14	93412788	93412788	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33636533	33636533	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170359635	170359635	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA3	3738	broad.mit.edu	37	1	111216208	111216208	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5154911	5154911	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120373135	120373135	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61623123	61623123	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555401	155555401	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36641964	36641964	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36766921	36766921	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD13	253980	broad.mit.edu	37	16	29934481	29934481	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36640042	36640042	+	Nonsense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58941426	58941426	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128696922	128696922	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101814923	101814923	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59878389	59878389	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1715	80856	broad.mit.edu	37	2	176794913	176794913	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8888086	8888086	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10412785	10412785	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34255868	34255868	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55599403	55599403	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86924398	86924398	+	3'UTR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL8	57563	broad.mit.edu	37	4	88091354	88091354	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC3	3823	broad.mit.edu	37	12	10588693	10588694	+	5'Flank	DNP	GT	TA	TA			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241725411	241725411	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135020282	135020282	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135020832	135020832	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135024344	135024344	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38859775	38859775	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52845781	52845781	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6C	286887	broad.mit.edu	37	12	52863627	52863627	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT77	374454	broad.mit.edu	37	12	53090181	53090181	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-5	85289	broad.mit.edu	37	17	39305910	39305910	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	117962721	117962721	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21531775	21531775	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	149982925	149982925	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150001145	150001145	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136587152	136587152	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS13	29124	broad.mit.edu	37	19	40097767	40097767	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48915895	48915895	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54754668	54754668	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRP2	79166	broad.mit.edu	37	19	55222023	55222023	+	RNA	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73566349	73566349	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283922	283922	broad.mit.edu	37	16	74372908	74372908	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5071472	5071472	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440563	440563	broad.mit.edu	37	1	13183458	13183458	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC493754	493754	broad.mit.edu	37	7	66041764	66041764	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932828	148932828	+	RNA	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23247248	23247248	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF2	164832	broad.mit.edu	37	2	100915221	100915221	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160932075	160932075	+	RNA	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160968971	160968971	+	Splice_Site	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62849254	62849254	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99762234	99762234	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771306	99771306	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170007412	170007412	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85518342	85518342	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54959111	54959111	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1940308	1940308	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56879313	56879313	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235968001	235968001	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39798844	39798844	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39929350	39929350	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166990843	166990843	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151900357	151900357	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136904872	136904872	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137018361	137018361	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP1	9479	broad.mit.edu	37	11	45925464	45925464	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1817800	1817801	+	Intron	DNP	CC	TA	TA			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3783108	3783108	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54527775	54527775	+	3'UTR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN3	55283	broad.mit.edu	37	1	85498523	85498523	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30679383	30679383	+	Intron	DEL	C	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42866259	42866259	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15652162	15652162	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL10	399818	broad.mit.edu	37	10	126477687	126477687	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4B	11282	broad.mit.edu	37	5	179228997	179228997	+	Intron	DEL	G	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43206960	43206960	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7612858	7612858	+	Frame_Shift_Del	DEL	G	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50925883	50925883	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50925985	50925985	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPEP	4285	broad.mit.edu	37	13	24449047	24449047	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLF2	8079	broad.mit.edu	37	12	6861263	6861263	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49437167	49437167	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118344632	118344632	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118371889	118371889	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD2	221938	broad.mit.edu	37	7	4965101	4965101	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132322635	132322635	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132326125	132326125	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5012419	5012419	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102709892	102709892	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49576222	49576222	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC4	79710	broad.mit.edu	37	X	106221360	106221360	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOS	4342	broad.mit.edu	37	8	57025678	57025678	+	Nonsense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL4	51073	broad.mit.edu	37	19	10363029	10363029	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRTO4	51154	broad.mit.edu	37	1	19585128	19585128	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60559974	60559974	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60070118	60070118	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31721239	31721239	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48026387	48026387	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF2	22823	broad.mit.edu	37	1	93580228	93580228	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD2	10797	broad.mit.edu	37	2	74441241	74441241	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149905932	149905932	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30611550	30611550	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236990115	236990115	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046507	9046507	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1247870	1247870	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71346978	71346978	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42769609	42769609	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10354322	10354322	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10356616	10356616	+	Silent	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36712613	36712613	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18059689	18059689	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109826823	109826823	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26377216	26377216	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171239525	171239525	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76566994	76566994	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12656522	12656522	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95097717	95097717	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31141569	31141569	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31141970	31141970	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST2	11143	broad.mit.edu	37	17	47875785	47875785	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164085484	164085484	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIP	4671	broad.mit.edu	37	5	70308489	70308489	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NANOS3	342977	broad.mit.edu	37	19	13987854	13987855	+	5'Flank	DEL	GC	-	-	rs149586075	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78415581	78415581	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183860348	183860348	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124812069	124812069	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124832795	124832795	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73285924	73285924	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB2	4708	broad.mit.edu	37	7	140402688	140402688	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB3	4709	broad.mit.edu	37	2	201950245	201950245	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170359226	170359226	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21135337	21135337	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143269	22143269	+	RNA	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101573416	101573416	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC4	283948	broad.mit.edu	37	16	617995	617995	+	5'UTR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777748	63777749	+	Intron	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN2	57555	broad.mit.edu	37	17	7317997	7317997	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55452324	55452324	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117662801	117662801	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108057298	108057298	+	Splice_Site	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPS	594857	broad.mit.edu	37	10	129350835	129350835	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115356706	115356706	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105153552	105153552	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206587503	206587503	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163295923	163295923	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP35	129401	broad.mit.edu	37	2	184022094	184022094	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62569036	62569036	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM	654231	broad.mit.edu	37	7	5923426	5923426	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128694569	128694569	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123787697	123787697	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183696312	183696312	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78399145	78399145	+	Silent	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900648	123900648	+	Frame_Shift_Del	DEL	G	-	-	rs146241525		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D2	4991	broad.mit.edu	37	17	2996027	2996027	+	Missense_Mutation	SNP	A	C	C	rs137876385		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925333	27925333	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694974	247694974	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166596	248166596	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248403108	248403108	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789557	248789557	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436738	248436738	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59282669	59282669	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404336	20404336	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22368951	22368951	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5363926	5363926	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B6	340980	broad.mit.edu	37	11	5602711	5602711	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541338	55541338	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761554	55761554	+	Frame_Shift_Del	DEL	G	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875404	247875404	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123813616	123813616	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624563	123624563	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873453	55873453	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56125432	56125432	+	5'Flank	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17599784	17599784	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176762792	176762792	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25453396	25453396	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12530097	12530097	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242054368	242054368	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128697856	128697856	+	Silent	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCB	5096	broad.mit.edu	37	3	136019969	136019970	+	Intron	INS	-	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4925348	4925348	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5075524	5075524	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138452918	138452918	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30732466	30732466	+	3'UTR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263026	140263026	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140627391	140627391	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140812327	140812327	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138035	56138035	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNA	5111	broad.mit.edu	37	20	5096118	5096118	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233190059	233190059	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65385568	65385568	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65385575	65385575	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65402863	65402863	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK9	255738	broad.mit.edu	37	1	55521646	55521646	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCL3	79031	broad.mit.edu	37	2	101192998	101192998	+	3'UTR	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66713197	66713197	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144880587	144880587	+	Intron	SNP	C	G	G	rs145545546	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59064319	59064319	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	650595	650595	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP2	114770	broad.mit.edu	37	19	15586207	15586207	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGS1	9489	broad.mit.edu	37	17	76392386	76392386	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160001425	160001425	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8793452	8793452	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM1	9600	broad.mit.edu	37	11	67259578	67259578	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKM2	5315	broad.mit.edu	37	15	72499545	72499545	+	Nonsense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32996339	32996339	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18890379	18890379	+	5'UTR	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242270866	242270866	+	Intron	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20335798	20335798	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131815253	131815253	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74337110	74337110	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6759312	6759312	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133245323	133245323	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134382666	134382666	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP1	10940	broad.mit.edu	37	8	99162872	99162872	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38144680	38144680	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131984548	131984548	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARD	5467	broad.mit.edu	37	6	35393585	35393585	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104205214	104205214	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113558626	113558626	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5D	5528	broad.mit.edu	37	6	42974720	42974720	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9550049	9550049	+	Splice_Site	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103908224	103908224	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12884889	12884889	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF5	343068	broad.mit.edu	37	1	13052875	13052875	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3328888	3328888	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14108797	14108797	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23518003	23518003	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151265708	151265708	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53227490	53227491	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53667197	53667197	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROZ	8858	broad.mit.edu	37	13	113814507	113814507	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79320297	79320297	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRX	57716	broad.mit.edu	37	19	40900895	40900895	+	Nonsense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD4	23550	broad.mit.edu	37	2	113942967	113942967	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87060752	87060752	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME3	10197	broad.mit.edu	37	17	40985780	40985780	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD1	26024	broad.mit.edu	37	7	99049973	99049973	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD2	79810	broad.mit.edu	37	5	71622351	71622351	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209309587	209309587	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136938296	136938296	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18759572	18759572	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40713284	40713284	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40827639	40827639	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42974015	42974015	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37154091	37154091	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5921393	5921393	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP2	10235	broad.mit.edu	37	11	64496314	64496314	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP9	10741	broad.mit.edu	37	20	18476640	18476640	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM18	92400	broad.mit.edu	37	9	125004274	125004274	+	Silent	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM3	5935	broad.mit.edu	37	X	48435356	48435356	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS1	5937	broad.mit.edu	37	2	161160110	161160110	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL4	9401	broad.mit.edu	37	8	145742036	145742036	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313951	79313951	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103113393	103113393	+	Intron	DEL	G	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8420609	8420609	+	Silent	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111697523	111697523	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111737651	111737651	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX2	5990	broad.mit.edu	37	19	6042002	6042002	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGP1	9827	broad.mit.edu	37	9	35752769	35752769	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF1	64285	broad.mit.edu	37	16	109338	109338	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152273319	152273319	+	Splice_Site	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK1	8737	broad.mit.edu	37	6	3085519	3085519	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87116262	87116262	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87404380	87404380	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF130	55819	broad.mit.edu	37	5	179393914	179393914	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77666811	77666811	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	60795017	60795017	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE	6120	broad.mit.edu	37	2	210881307	210881307	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38129166	38129166	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS10	6204	broad.mit.edu	37	6	34386050	34386050	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS3	6188	broad.mit.edu	37	11	75115888	75115888	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6	6194	broad.mit.edu	37	9	19380082	19380082	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RQCD1	9125	broad.mit.edu	37	2	219449448	219449448	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43906398	43906398	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93026810	93026810	+	Silent	SNP	T	A	A	rs34991280	byFrequency;by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165378824	165378824	+	Silent	SNP	G	A	A	rs149401256		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38954167	38954167	+	Silent	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39070591	39070591	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A16	140576	broad.mit.edu	37	1	153580197	153580197	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR4	8698	broad.mit.edu	37	19	3180007	3180008	+	3'UTR	DNP	GG	CT	CT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9983593	9983593	+	Frame_Shift_Del	DEL	C	-	-	rs138410095		TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBK2	646643	broad.mit.edu	37	19	56042603	56042603	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	53751949	53751949	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38812604	38812604	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144890968	144890968	+	Silent	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76894544	76894544	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L3	23231	broad.mit.edu	37	4	25831720	25831720	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT2	4735	broad.mit.edu	37	2	242283022	242283022	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN2	83667	broad.mit.edu	37	1	28598891	28598891	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B4	10262	broad.mit.edu	37	1	149898396	149898396	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81372234	81372234	+	Intron	DEL	C	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPD	6441	broad.mit.edu	37	10	81701312	81701313	+	Intron	INS	-	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67142838	67142838	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72633154	72633154	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130507147	130507147	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130536144	130536144	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41083199	41083199	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT2	6472	broad.mit.edu	37	12	57626863	57626863	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51656446	51656446	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT2	22933	broad.mit.edu	37	19	39371248	39371248	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160589496	160589496	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48541816	48541816	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44672631	44672631	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44674597	44674597	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45242166	45242166	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25812052	25812052	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103038558	103038558	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45565056	45565056	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5327649	5327649	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118596768	118596768	+	Nonsense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54929793	54929793	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A2	146802	broad.mit.edu	37	17	19610092	19610092	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108622628	108622628	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20570537	20570537	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906248	164906248	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11151948	11151948	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2740835	2740835	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2752505	2752505	+	Missense_Mutation	SNP	A	G	G	rs151002873	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI1	6615	broad.mit.edu	37	20	48604461	48604461	+	Silent	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84269834	84269834	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-13	100033450	broad.mit.edu	37	15	25438301	25438301	+	RNA	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25472319	25472319	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS3	10174	broad.mit.edu	37	8	22415693	22415693	+	Silent	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23893822	23893823	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231033760	231033760	+	3'UTR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231118158	231118158	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140357481	140357482	+	Intron	DNP	GG	AT	AT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139322350	139322350	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2E	6704	broad.mit.edu	37	1	153066017	153066017	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY3	10251	broad.mit.edu	37	X	155004005	155004005	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53468892	53468892	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRM	6723	broad.mit.edu	37	1	11116146	11116146	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM1	10250	broad.mit.edu	37	1	24979550	24979550	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17373541	17373541	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52546905	52546905	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104123896	104123896	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104151918	104151918	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17737234	17737234	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17737257	17737257	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1203337	1203337	+	5'Flank	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK17B	9262	broad.mit.edu	37	2	197028050	197028050	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	169020319	169020319	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK40	83931	broad.mit.edu	37	1	36824331	36824331	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOM	2040	broad.mit.edu	37	9	124116915	124116915	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUDS3	64426	broad.mit.edu	37	12	118838381	118838381	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29776234	29776234	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115417054	115417054	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152826578	152826578	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119944806	119944806	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC1	6867	broad.mit.edu	37	8	38700953	38700953	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1D	79101	broad.mit.edu	37	11	93464220	93464220	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32630923	32630923	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8051319	8051319	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF6	6878	broad.mit.edu	37	7	99705159	99705159	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100531506	100531506	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61489214	61489214	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPBP	6892	broad.mit.edu	37	6	33272134	33272134	+	Missense_Mutation	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R39	259285	broad.mit.edu	37	7	142881086	142881086	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100029218	100029218	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX21	30009	broad.mit.edu	37	17	45811197	45811198	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114832619	114832619	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF20	6942	broad.mit.edu	37	22	42609585	42609585	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179659996	179659996	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46661230	46661230	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70411522	70411522	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX9	374618	broad.mit.edu	37	15	56704497	56704497	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10410284	10410284	+	Silent	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177451	89177451	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44951740	44951740	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP1	55145	broad.mit.edu	37	8	42693223	42693223	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155571995	155571995	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAGL1	64129	broad.mit.edu	37	1	32044664	32044664	+	Intron	SNP	A	G	G	rs139778483	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153548987	153548987	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166910513	166910513	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98180945	98180945	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35698007	35698007	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63000635	63000635	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38776144	38776144	+	Silent	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM2D3	80213	broad.mit.edu	37	15	102191816	102191816	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125946343	125946343	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32959718	32959718	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36231430	36231430	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150B	284417	broad.mit.edu	37	19	55832010	55832010	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68810213	68810213	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19775744	19775744	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29709742	29709742	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117849201	117849201	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152226549	152226549	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF10	8743	broad.mit.edu	37	3	172227000	172227000	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578175	7578175	+	Splice_Site	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1491667	1491667	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20012237	20012237	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35747414	35747414	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189065212	189065212	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189012520	189012520	+	3'UTR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14390957	14390957	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72987658	72987658	+	5'UTR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73168009	73168009	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73442648	73442648	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81609452	81609453	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769680	31769680	+	Missense_Mutation	SNP	G	T	T	rs147659074	byFrequency	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3200875	3200875	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3261239	3261239	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23L	153657	broad.mit.edu	37	5	34867061	34867062	+	Missense_Mutation	DNP	GT	TA	TA			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147830161	147830161	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC33	23548	broad.mit.edu	37	5	40730417	40730417	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15177755	15177755	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117634357	117634357	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179453980	179453980	+	Silent	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179629587	179629587	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54941973	54941973	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751266	19751266	+	Missense_Mutation	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751284	19751284	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19738178	19738178	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34929438	34929438	+	Intron	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA3	9039	broad.mit.edu	37	3	69124610	69124610	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156967516	156967516	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2A	165324	broad.mit.edu	37	2	24222558	24222558	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33475291	33475291	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33507682	33507682	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215953238	215953238	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216052334	216052334	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55598123	55598123	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP30	84749	broad.mit.edu	37	12	109510068	109510068	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144116948	144116948	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP3	9960	broad.mit.edu	37	15	63829318	63829318	+	Missense_Mutation	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22021556	22021556	+	Intron	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11531052	11531052	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144812236	144812236	+	Missense_Mutation	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38185437	38185437	+	IGR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45742681	45742681	+	IGR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46208355	46208355	+	IGR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	72813276	72813276	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8556425	8556425	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474707	119474707	+	IGR	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48970681	48970682	+	IGR	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103871	49103871	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119145699	119145699	+	IGR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318292	34318292	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77561902	77561902	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	50517541	50517541	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23155355	23155355	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31127476	31127476	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33372674	33372674	+	IGR	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404776	33404776	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	84704470	84704470	+	IGR	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18967156	18967156	+	IGR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	88391	88391	+	IGR	DEL	A	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	9020575	9020575	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20067457	20067457	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	49525993	49525993	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7056601	7056601	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903228	148903228	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065216	149065216	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153409343	153409344	+	IGR	DNP	GG	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222435949	222435949	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224051514	224051514	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228637268	228637268	+	IGR	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247901919	247901919	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361196	12361196	+	IGR	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15199832	15199832	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24763018	24763018	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	30370129	30370129	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132591856	132591856	+	IGR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164009221	164009221	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862409	33862409	+	IGR	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67241348	67241348	+	IGR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92068164	92068164	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177015099	177015099	+	IGR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75397766	75397766	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111337749	111337749	+	IGR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138369374	138369374	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9423961	9423961	+	IGR	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144608375	144608375	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	65868217	65868217	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	144521927	144521927	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160134557	160134557	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27978443	27978443	+	IGR	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78497307	78497307	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778391	80778391	+	IGR	DEL	A	-	-			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121164350	121164350	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141512035	141512035	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910239	62910239	+	IGR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020677	63020677	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125934041	125934041	+	IGR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43126287	43126287	+	IGR	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43298242	43298242	+	IGR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48076641	48076641	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801878	88801878	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89499237	89499237	+	IGR	SNP	T	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44174535	44174535	+	IGR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106516508	106516508	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115828032	115828032	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25048063	25048063	+	IGR	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74961265	74961265	+	IGR	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74965884	74965884	+	IGR	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	91931709	91931709	+	IGR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92478381	92478381	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92748666	92748666	+	IGR	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155169516	155169516	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77896819	77896819	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135638770	135638770	+	3'UTR	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2635500	2635500	+	Missense_Mutation	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100115121	100115121	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12327926	12327926	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26A	9559	broad.mit.edu	37	10	70931060	70931060	+	3'UTR	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38829524	38829524	+	Intron	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR12	55759	broad.mit.edu	37	2	203749310	203749310	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167272641	167272641	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74951893	74951893	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33663430	33663430	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC12	128488	broad.mit.edu	37	20	43752613	43752613	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC2	10406	broad.mit.edu	37	20	44108308	44108308	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WLS	79971	broad.mit.edu	37	1	68611506	68611506	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	939105	939105	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32410783	32410783	+	Intron	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61705820	61705820	+	3'UTR	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180794176	180794176	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX2	51087	broad.mit.edu	37	17	7193049	7193049	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183493769	183493769	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75230867	75230867	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135743482	135743482	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38120333	38120333	+	3'UTR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764222	77764222	+	Missense_Mutation	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766190	77766190	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81036851	81036851	+	Intron	SNP	A	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81065187	81065187	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70462880	70462880	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM6	9204	broad.mit.edu	37	1	35496222	35496222	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF181	339318	broad.mit.edu	37	19	35231797	35231797	+	Missense_Mutation	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF211	10520	broad.mit.edu	37	19	58152630	58152631	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52192873	52192873	+	Silent	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74606978	74606978	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF259	8882	broad.mit.edu	37	11	116657265	116657265	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF266	10781	broad.mit.edu	37	19	9526280	9526280	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF277	11179	broad.mit.edu	37	7	111846828	111846828	+	Silent	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF295	49854	broad.mit.edu	37	21	43412010	43412010	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43310547	43310547	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54080224	54080224	+	Missense_Mutation	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58437834	58437834	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF436	80818	broad.mit.edu	37	1	23688996	23688996	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF571	51276	broad.mit.edu	37	19	38056034	38056034	+	Missense_Mutation	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208178	53208178	+	3'UTR	SNP	T	A	A	rs140758614	by1000genomes	TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182026889	182026889	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151262666	151262666	+	Silent	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF709	163051	broad.mit.edu	37	19	12577468	12577468	+	Intron	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF808	388558	broad.mit.edu	37	19	53057748	53057748	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829393	57829393	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF844	284391	broad.mit.edu	37	19	12187275	12187275	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048467	238048467	+	Missense_Mutation	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050184	238050184	+	Intron	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050591	238050591	+	Intron	SNP	C	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53282163	53282163	+	Intron	SNP	A	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24736571	24736571	+	RNA	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8048203	8048203	+	Silent	SNP	G	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28734444	28734444	+	3'UTR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20362731	20362731	+	5'UTR	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62552350	62552350	+	5'Flank	SNP	T	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133076283	133076283	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442481	89442481	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22423273	22423273	+	5'Flank	SNP	G	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187249962	187249962	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142139579	142139579	+	Intron	SNP	T	C	C			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471641	142471641	+	Intron	SNP	G	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407253	38407253	+	Intron	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84677037	84677037	+	5'Flank	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51151406	51151406	+	3'UTR	SNP	C	T	T			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
