Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA13	154664	broad.mit.edu	37	7	48335346	48335346	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107618201	107618201	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67018060	67018060	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20782586	20782586	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20784894	20784894	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48204199	48204199	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101604056	101604056	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44065024	44065024	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134131236	134131236	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32366877	32366877	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20556392	20556392	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81545819	81545819	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL9	284382	broad.mit.edu	37	19	8807981	8807981	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69347641	69347641	+	Silent	SNP	C	T	T	rs139138798	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39525483	39525483	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156936222	156936222	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39604102	39604102	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106188645	106188645	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106631211	106631211	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106757685	106757685	+	RNA	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106801301	106801301	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107057630	107057630	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107170344	107170344	+	RNA	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77369845	77369845	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88027134	88027134	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919249	147919249	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP11	119385	broad.mit.edu	37	10	88769446	88769446	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58128353	58128353	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL5	60509	broad.mit.edu	37	2	27291499	27291499	+	Splice_Site	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62297219	62297219	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91708472	91708472	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112229818	112229819	+	Intron	DEL	TT	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233323244	233323244	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38514960	38514960	+	Silent	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41522310	41522310	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278296	114278296	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114279468	114279468	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37488665	37488665	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO9	338440	broad.mit.edu	37	11	431688	431688	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28506503	28506503	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21242051	21242051	+	Intron	DEL	A	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21255222	21255222	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPL2	55198	broad.mit.edu	37	12	105589110	105589110	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35240533	35240533	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156928983	156928983	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF16	27237	broad.mit.edu	37	1	3390029	3390029	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157502244	157502244	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC5	79798	broad.mit.edu	37	16	31476451	31476451	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSE	415	broad.mit.edu	37	X	2876491	2876491	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197091438	197091438	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176837984	176837984	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3910966	3910966	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64664164	64664164	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25265298	25265298	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25285542	25285542	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194182842	194182842	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89997942	89997942	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55329662	55329662	+	Intron	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79389319	79389319	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32196651	32196651	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1394115	1394115	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31601479	31601479	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31601483	31601483	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN2	51411	broad.mit.edu	37	12	51685752	51685776	+	Frame_Shift_Del	DEL	GCTGCCCTGAAGGGCTCAGGGCTCC	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11412771	11412771	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIX1	55299	broad.mit.edu	37	5	34922317	34922317	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49692179	49692179	+	Silent	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76158106	76158106	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf54	121273	broad.mit.edu	37	12	48882868	48882868	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46946499	46946499	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf166B	145497	broad.mit.edu	37	14	77297578	77297578	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf90	646174	broad.mit.edu	37	16	3544801	3544801	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf28	283987	broad.mit.edu	37	17	72952106	72952106	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179426078	179426078	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf162	128346	broad.mit.edu	37	1	112018547	112018547	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf85	112770	broad.mit.edu	37	1	156264460	156264460	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf31	79625	broad.mit.edu	37	4	121961148	121961148	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37107805	37107805	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183222	37183222	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41186284	41186284	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf125	84300	broad.mit.edu	37	6	33679251	33679251	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57347348	57347348	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39308254	39308254	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39331766	39331766	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50212395	50212395	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86180892	86180892	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2666138	2666138	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2788840	2788840	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53821131	53821131	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181690810	181690810	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201030103	201030103	+	Intron	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64873625	64873625	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44274141	44274141	+	Intron	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44274206	44274206	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44286819	44286819	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76834862	76834862	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARKD	55739	broad.mit.edu	37	13	111274657	111274657	+	Silent	SNP	T	A	A	rs142423406	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10713962	10713962	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC61	729440	broad.mit.edu	37	19	46506741	46506741	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86125711	86125711	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88B	283234	broad.mit.edu	37	11	64111949	64111949	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL23	6368	broad.mit.edu	37	17	34344822	34344822	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNE1	898	broad.mit.edu	37	19	30313082	30313082	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43866423	43866423	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5	921	broad.mit.edu	37	11	60893345	60893345	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD69	969	broad.mit.edu	37	12	9906180	9906180	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174223872	174223872	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66432427	66432427	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31305419	31305419	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55794669	55794669	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55907857	55907857	+	Missense_Mutation	SNP	C	A	A	rs140017746	byFrequency;by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151503155	151503155	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50863273	50863273	+	Silent	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61749322	61749322	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16631280	16631280	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHTF18	63922	broad.mit.edu	37	16	843997	843997	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170610353	170610353	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74447649	74447649	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74451961	74451961	+	Missense_Mutation	SNP	G	T	T	rs151079980	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87674070	87674070	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147259226	147259226	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76528859	76528859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23456226	23456226	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103481273	103481273	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121243689	121243689	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139706689	139706689	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139819813	139819813	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139833359	139833359	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111083126	111083126	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107438145	107438145	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137713784	137713784	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3691245	3691245	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX18	285521	broad.mit.edu	37	4	73931122	73931122	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3L	54973	broad.mit.edu	37	1	1247190	1247190	+	3'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197191557	197191557	+	Intron	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151904630	151904630	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2820157	2820157	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34011858	34011858	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34209244	34209244	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1	1452	broad.mit.edu	37	5	148929563	148929563	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23472293	23472293	+	5'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP1	1487	broad.mit.edu	37	4	1207166	1207166	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10794644	10794644	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSD	1509	broad.mit.edu	37	11	1780047	1780047	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25044046	25044046	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R4	51167	broad.mit.edu	37	6	84650320	84650320	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105767708	105767708	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994419	143994420	+	Intron	INS	-	G	G	rs149081590	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27852651	27852651	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59787177	59787177	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57489281	57489281	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86070992	86070992	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122075668	122075668	+	5'UTR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50977051	50977051	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50994220	50994220	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155180838	155180838	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110644577	110644577	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC7	91614	broad.mit.edu	37	11	33047270	33047270	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117168530	117168530	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1626372	1626372	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32827695	32827695	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53930525	53930525	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21775402	21775402	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52426820	52426820	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13829602	13829602	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302410	186302410	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB14	79982	broad.mit.edu	37	4	100851498	100851498	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172007681	172007681	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169509999	169509999	+	3'UTR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	441749	441749	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37584192	37584192	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57671826	57671826	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL1	1855	broad.mit.edu	37	1	1273345	1273345	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38884551	38884551	+	Frame_Shift_Del	DEL	C	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71817452	71817452	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108353817	108353817	+	Nonsense_Mutation	SNP	C	T	T	rs151046961	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E4F1	1877	broad.mit.edu	37	16	2278460	2278460	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236572482	236572482	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67913844	67913844	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28386771	28386771	+	Intron	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55227926	55227926	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117657218	117657218	+	3'UTR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELFN2	114794	broad.mit.edu	37	22	37771193	37771193	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27306318	27306318	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR4P	326342	broad.mit.edu	37	19	6990889	6990889	+	5'Flank	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX2	2018	broad.mit.edu	37	10	119307833	119307833	+	3'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185038299	185038299	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134514683	134514683	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270748	56270748	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37868201	37868201	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128046549	128046549	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP1	54845	broad.mit.edu	37	8	95677302	95677302	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS2	2114	broad.mit.edu	37	21	40186898	40186898	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5564436	5564436	+	3'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133059653	133059654	+	Frame_Shift_Ins	INS	-	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH1	2145	broad.mit.edu	37	17	40857122	40857122	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM115C	285966	broad.mit.edu	37	7	143421909	143421909	+	3'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM118A	55007	broad.mit.edu	37	22	45718430	45718430	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520566	131520566	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521626	131521626	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM180A	389558	broad.mit.edu	37	7	135418863	135418863	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672737	10672737	+	Silent	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50A	9130	broad.mit.edu	37	X	153674682	153674682	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55D	54827	broad.mit.edu	37	11	114441716	114441716	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626819	43626819	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90534188	90534188	+	Missense_Mutation	SNP	C	A	A	rs138369848		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR1	84188	broad.mit.edu	37	11	13729762	13729762	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242418425	242418425	+	Intron	SNP	A	T	T	rs113449463		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80046702	80046702	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126373678	126373678	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48818508	48818508	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48905428	48905428	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO24	26261	broad.mit.edu	37	7	100190489	100190489	+	Frame_Shift_Del	DEL	T	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157767630	157767630	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIP1L1	81608	broad.mit.edu	37	4	54294193	54294193	+	Splice_Site	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ33360	401172	broad.mit.edu	37	5	6337389	6337389	+	5'UTR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240255649	240255649	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTA	2339	broad.mit.edu	37	8	42927177	42927177	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169535247	169535247	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79103289	79103289	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39455020	39455021	+	3'UTR	DNP	TG	AT	AT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4312058	4312058	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52781061	52781061	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT10	84750	broad.mit.edu	37	8	33311196	33311196	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160763740	160763740	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAR1	54433	broad.mit.edu	37	4	110739126	110739126	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	100973874	100973874	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22729380	22729380	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GET4	51608	broad.mit.edu	37	7	926184	926184	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134217327	134217327	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6602206	6602206	+	Splice_Site	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	3932421	3932421	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14622549	14622549	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4855202	4855202	+	3'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220364542	220364542	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220371440	220371440	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT1	2779	broad.mit.edu	37	3	50231851	50231851	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR1	9527	broad.mit.edu	37	17	28808315	28808315	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333929	27333929	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25840182	25840182	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25886786	25886786	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR4	2828	broad.mit.edu	37	19	46095096	46095096	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5D	55507	broad.mit.edu	37	12	13095310	13095310	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11716647	11716647	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158284035	158284035	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105732855	105732855	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720582	146720582	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86468104	86468104	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSC2	2928	broad.mit.edu	37	22	19136549	19136549	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130774813	130774813	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C5	9328	broad.mit.edu	37	9	135932240	135932240	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19380736	19380736	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5290732	5290732	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73617717	73617717	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236732404	236732404	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41004585	41004585	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84353495	84353495	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65479883	65479883	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28459892	28459892	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89414140	89414140	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BE	8349	broad.mit.edu	37	1	149857805	149857805	+	3'UTR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120302034	120302034	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26235526	26235526	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27147988	27147988	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27181467	27181467	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21083527	21083527	+	Intron	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS6	79803	broad.mit.edu	37	10	103826164	103826164	+	Silent	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS6	79803	broad.mit.edu	37	10	103826182	103826182	+	Silent	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192637	152192637	+	Missense_Mutation	SNP	C	T	T	rs138042599	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82923773	82923773	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICOSLG	23308	broad.mit.edu	37	21	45655295	45655295	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI44L	10964	broad.mit.edu	37	1	79094107	79094107	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99459900	99459900	+	Splice_Site	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47122386	47122386	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130411723	130411723	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130419503	130419503	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81578230	81578230	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55210621	55210621	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15200004	15200004	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15212428	15212428	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL6	11172	broad.mit.edu	37	9	5185499	5185499	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS12	57117	broad.mit.edu	37	4	106621161	106621161	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61922992	61922992	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCH	64799	broad.mit.edu	37	15	67713788	67713788	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123101441	123101441	+	Frame_Shift_Del	DEL	T	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF4	3662	broad.mit.edu	37	6	396952	396952	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107977956	107977956	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145533105	145533105	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15701091	15701091	+	Intron	DEL	C	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54780336	54780336	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7679144	7679144	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD4	65094	broad.mit.edu	37	1	227920042	227920042	+	3'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124436269	124436269	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150646173	150646173	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40312060	40312060	+	Nonstop_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440425	99440425	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99441777	99441777	+	3'UTR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196309547	196309547	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV2	169522	broad.mit.edu	37	9	2719074	2719074	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215781360	215781374	+	In_Frame_Del	DEL	CTGTGCAGATAATAA	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	422056	422056	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5D	8284	broad.mit.edu	37	Y	21869168	21869168	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55980531	55980531	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659146	142659146	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75557714	75557714	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17817334	17817334	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34242123	34242123	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57975751	57975752	+	Intron	DNP	GG	TT	TT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC1	3833	broad.mit.edu	37	6	33374668	33374668	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55341916	55341916	+	3'UTR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55354426	55354426	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44596259	44596259	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF6	1316	broad.mit.edu	37	10	3821782	3821782	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86868947	86868947	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86869414	86869414	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123089424	123089424	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122152480	122152480	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT14	3861	broad.mit.edu	37	17	39742587	39742587	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT4	3851	broad.mit.edu	37	12	53202335	53202335	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-11	386678	broad.mit.edu	37	21	46067109	46067109	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-7	386675	broad.mit.edu	37	21	46021524	46021524	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744152	31744152	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914169	31914169	+	5'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107600786	107600786	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183099666	183099666	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48624242	48624242	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400794	400794	broad.mit.edu	37	1	165551577	165551577	+	5'Flank	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55714092	55714092	+	RNA	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3426172	3426172	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653544	653544	broad.mit.edu	37	4	190989652	190989652	+	5'Flank	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22453478	22453478	+	RNA	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF2	164832	broad.mit.edu	37	2	100906893	100906896	+	Intron	DEL	AGTT	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160905137	160905137	+	RNA	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62758579	62758579	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141609389	141609389	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51021452	51021452	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70505515	70505515	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40618848	40618848	+	5'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRWD1	222229	broad.mit.edu	37	7	102108993	102108993	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	118057337	118057338	+	Intron	DEL	GA	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96034410	96034410	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43822177	43822177	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43351999	43351999	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61769568	61769568	+	Intron	DEL	C	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66406002	66406002	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94882710	94882710	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3299678	3299678	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA2	117153	broad.mit.edu	37	14	39716257	39716257	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31465927	31465927	+	5'UTR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR218-1	407000	broad.mit.edu	37	4	20529935	20529935	+	RNA	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882648	90882648	+	5'Flank	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132329613	132329613	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55539369	55539369	+	3'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575710	49575710	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71357871	71357871	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41958710	41958710	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60159970	60159970	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLN	10232	broad.mit.edu	37	16	816879	816879	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56670939	56670939	+	5'Flank	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29598882	29598882	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675680	100675681	+	Frame_Shift_Ins	INS	-	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1096273	1096273	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10223651	10223651	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10358324	10358324	+	Missense_Mutation	SNP	G	A	A	rs143572602	byFrequency	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23858607	23858607	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23897918	23897918	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18022483	18022483	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26299684	26299684	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192272962	192272962	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76900500	76900500	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12639576	12639576	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24400733	24400733	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101936242	101936242	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101936320	101936320	+	Silent	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101936390	101936390	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36158090	36158090	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH2	29781	broad.mit.edu	37	22	50956587	50956587	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKIPSD	51517	broad.mit.edu	37	3	48719041	48719041	+	Silent	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33330872	33330872	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16056804	16056804	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23931842	23931842	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115998178	115998178	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91962079	91962079	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45269002	45269002	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70502465	70502465	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL4	84461	broad.mit.edu	37	17	7220798	7220798	+	Nonsense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29560147	29560147	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24839463	24839463	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52493964	52493964	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52535776	52535776	+	5'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIP7	51388	broad.mit.edu	37	16	69375417	69375417	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151784306	151784306	+	Silent	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC4L	79050	broad.mit.edu	37	12	132636667	132636668	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32188210	32188210	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164271983	164271983	+	Silent	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64428366	64428366	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3L	115024	broad.mit.edu	37	17	39988776	39988776	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156841342	156841342	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP2	57532	broad.mit.edu	37	17	27621146	27621146	+	5'UTR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13361196	13361196	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102332504	102332504	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97619394	97619394	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123556615	123556615	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50964932	50964932	+	Silent	SNP	G	T	T	rs140510079		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A3	26496	broad.mit.edu	37	11	7960723	7960723	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10C1	442194	broad.mit.edu	37	6	29408140	29408140	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57971146	57971146	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A1	346528	broad.mit.edu	37	7	144015469	144015469	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143747363	143747363	+	5'Flank	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247398	248247399	+	Intron	INS	-	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153920	248153920	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112550	248112550	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436673	248436673	+	Silent	SNP	G	A	A	rs150467351		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248437039	248437039	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637546	248637546	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084397	248084397	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180582227	180582228	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974153	49974153	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248603	20248603	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55418741	55418741	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4869784	4869784	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59189984	59189984	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B3	441608	broad.mit.edu	37	11	58169967	58169967	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579095	55579095	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725087	158725087	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872729	55872729	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873168	55873168	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55890059	55890059	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179260133	179260133	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26739541	26739541	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUB2	78990	broad.mit.edu	37	14	94510858	94510858	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146076983	146076983	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149919162	149919162	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVGP1	5016	broad.mit.edu	37	1	111964312	111964312	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK6	56924	broad.mit.edu	37	15	40564327	40564327	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25453313	25453313	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150839503	150839503	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52651531	52651531	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073342	134073342	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30725202	30725202	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67801090	67801090	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140167783	140167783	+	Silent	SNP	C	G	G	rs146713367		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712593	140712593	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773060	140773060	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82456082	82456082	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47831066	47831066	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1A	5130	broad.mit.edu	37	3	195969348	195969348	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105173722	105173722	+	Splice_Site	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105204594	105204594	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103814199	103814199	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70172802	70172802	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDSS2	57107	broad.mit.edu	37	6	107551226	107551226	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31908632	31908632	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57325767	57325767	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179597586	179597586	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6262674	6262674	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46913645	46913645	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64421087	64421087	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	77026761	77026761	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX2	5308	broad.mit.edu	37	4	111539234	111539234	+	3'UTR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51612586	51612586	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51655914	51655914	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51921691	51921691	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51934392	51934392	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59812353	59812353	+	Intron	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42036484	42036484	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8769149	8769149	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD1	5333	broad.mit.edu	37	3	38050062	38050062	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144997574	144997574	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23691650	23691650	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20290768	20290768	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNP	4860	broad.mit.edu	37	14	20944820	20944820	+	3'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86255764	86255764	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7416687	7416687	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57873091	57873091	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79773475	79773475	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3C	10623	broad.mit.edu	37	1	145609339	145609339	+	5'UTR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38160135	38160135	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124503667	124503667	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542598	14542598	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58733925	58733925	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63863343	63863343	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9594955	9594955	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG3	10394	broad.mit.edu	37	11	57145327	57145327	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62202177	62202177	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64142763	64142763	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCQ	5588	broad.mit.edu	37	10	6527020	6527020	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKX	5613	broad.mit.edu	37	X	3530236	3530236	+	3'UTR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3692378	3692378	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95941810	95941810	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93593251	93593251	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150321643	150321643	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459544	142459544	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43687515	43687515	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209309305	209309305	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96860849	96860849	+	Silent	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN1	5770	broad.mit.edu	37	20	49196154	49196154	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8518298	8518299	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8518457	8518457	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8633141	8633141	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157361513	157361513	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691350	157691350	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64519396	64519396	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136433176	136433176	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66270545	66270545	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD17	5884	broad.mit.edu	37	5	68689368	68689383	+	Intron	DEL	TCCTTAGAATTAAGAA	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4861956	4861956	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17701269	17701269	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36217805	36217805	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85774498	85774498	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173830169	173830169	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22349539	22349539	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASIP1	54922	broad.mit.edu	37	19	49223990	49223990	+	3'UTR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM22	55696	broad.mit.edu	37	5	150073581	150073581	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48381910	48381910	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCC2	55920	broad.mit.edu	37	1	17747100	17747100	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCVRN	5957	broad.mit.edu	37	17	9801290	9801290	+	3'UTR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP1	65055	broad.mit.edu	37	2	86459766	86459766	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100050907	100050907	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107114570	107114570	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248782	117248782	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108487260	108487260	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS10	6001	broad.mit.edu	37	10	121287108	121287108	+	5'Flank	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3388075	3388075	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116269565	116269565	+	Splice_Site	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72921308	72921308	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240978134	240978134	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOB	388	broad.mit.edu	37	2	20647421	20647421	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT1	55288	broad.mit.edu	37	17	30502272	30502274	+	Intron	DEL	TAG	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33517469	33517469	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72678738	72678738	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31401639	31401639	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31421442	31421442	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31529239	31529239	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	142053706	142053706	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF43	54894	broad.mit.edu	37	17	56439904	56439904	+	Splice_Site	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201969089	201969089	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79638902	79638902	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124742335	124742335	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38132728	38132728	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KB1	6198	broad.mit.edu	37	17	57992021	57992021	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KL1	83694	broad.mit.edu	37	14	75377882	75377882	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114309076	114309076	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237756990	237756990	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802538	237802538	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130466428	130466428	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50832575	50832575	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68377238	68377238	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200173488	200173488	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP3	10067	broad.mit.edu	37	1	155228817	155228817	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38967098	38967098	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166245809	166245810	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123509035	123509035	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38639474	38639474	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43605996	43605996	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71427594	71427594	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83774606	83774606	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2L	9728	broad.mit.edu	37	15	49304865	49304865	+	Nonsense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101080669	101080669	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155077	67155077	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP5L	80851	broad.mit.edu	37	1	249118957	249118957	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113303643	113303643	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3672024	3672024	+	Silent	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72200383	72200383	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLBP	7884	broad.mit.edu	37	4	1695555	1695555	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100774746	100774746	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A11	55867	broad.mit.edu	37	11	64337061	64337061	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38355521	38355521	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116569709	116569709	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A18	83733	broad.mit.edu	37	22	18063888	18063888	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A2	1836	broad.mit.edu	37	5	149360432	149360434	+	In_Frame_Del	DEL	ATC	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28548546	28548546	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98766421	98766421	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84455614	84455614	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA4	6597	broad.mit.edu	37	19	11169547	11169547	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56563453	56563453	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130912943	130912943	+	Intron	SNP	T	C	C	rs146406975	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246093297	246093297	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231367883	231367883	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214794784	214794784	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938325	52938325	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147491409	147491409	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167658520	167658520	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR4	163778	broad.mit.edu	37	1	152944454	152944454	+	Frame_Shift_Del	DEL	C	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66475714	66475714	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53049136	53049136	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53076715	53076715	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104099502	104099502	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191841514	191841514	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN4	81551	broad.mit.edu	37	8	27099177	27099177	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53237247	53237247	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46294926	46294926	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO3	6612	broad.mit.edu	37	21	46228916	46228916	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149881043	149881043	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113212226	113212226	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23836250	23836250	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23873416	23873416	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5	6877	broad.mit.edu	37	10	105139624	105139624	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115120648	115120648	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1B	9623	broad.mit.edu	37	14	96152712	96152712	+	5'Flank	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96137713	96137713	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90489427	90489427	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100190940	100190940	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121008270	121008270	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20859920	20859920	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648695	169648695	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11513938	11513938	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164393680	164393680	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167012328	167012328	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98146791	98146791	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	62989999	62990000	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM6SF1	53346	broad.mit.edu	37	15	83791516	83791516	+	Nonsense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED8	283578	broad.mit.edu	37	14	77808117	77808117	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	128899811	128899811	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM202	338949	broad.mit.edu	37	15	72699322	72699322	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM214	54867	broad.mit.edu	37	2	27259358	27259358	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37470786	37470786	+	Intron	SNP	G	A	A	rs12484305		TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2408684	2408684	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF12A	51330	broad.mit.edu	37	16	3071600	3071600	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP2	7142	broad.mit.edu	37	16	11362767	11362768	+	Frame_Shift_Ins	INS	-	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47384334	47384334	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59851894	59851894	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578246	7578247	+	Frame_Shift_Ins	INS	-	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154155629	154155629	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211534210	211534210	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119996524	119996524	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30113788	30113788	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55036743	55036743	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67062332	67062332	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320578	38320578	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31294908	31294908	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31354818	31354818	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142625965	142625965	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179501461	179501462	+	Frame_Shift_Ins	INS	-	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3B	84959	broad.mit.edu	37	11	122680631	122680631	+	3'UTR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q2	92912	broad.mit.edu	37	15	76183198	76183198	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5530631	5530631	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103354653	103354653	+	Intron	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70066085	70066085	+	3'UTR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35954589	35954589	+	Intron	SNP	G	T	T	rs117185659	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41504779	41504779	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654414	210654414	+	Intron	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780792	73780792	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	11978664	11978664	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216052523	216052523	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216219956	216219956	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55547285	55547285	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640928	57640928	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49329950	49329950	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30226772	30226772	+	Intron	SNP	T	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	121756827	121756827	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130262804	130262804	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	21683368	21683368	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116989765	116989765	+	IGR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124109324	124109324	+	IGR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124235855	124235855	+	IGR	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48249297	48249297	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55258847	55258847	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57995268	57995269	+	IGR	DNP	GG	TT	TT			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58116879	58116879	+	IGR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59974346	59974346	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98436585	98436585	+	IGR	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	131776841	131776841	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	22161761	22161761	+	IGR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	27276170	27276170	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105466707	105466707	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19299407	19299407	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87871532	87871532	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097319	20097319	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20446100	20446100	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23500602	23500602	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34782005	34782005	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20605108	20605108	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31985227	31985227	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31985666	31985666	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33373358	33373358	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380038	33380038	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412751	33412751	+	IGR	DEL	C	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	71455367	71455367	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25410406	25410406	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25981887	25981887	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	49579819	49579819	+	IGR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70286060	70286060	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20878184	20878184	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22792819	22792819	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23675741	23675741	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53263691	53263691	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53507504	53507504	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119157134	119157134	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262526	149262526	+	IGR	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179556291	179556291	+	IGR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215044232	215044232	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222435715	222435715	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605103	248605103	+	IGR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29862312	29862312	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47094123	47094123	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32114020	32114020	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32119225	32119225	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16346083	16346083	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176189944	176189944	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798527	52798527	+	IGR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81428168	81428168	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96244811	96244811	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1002883	1002883	+	IGR	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120524983	120524983	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96387023	96387023	+	IGR	DEL	C	-	-	rs3966829	by1000genomes	TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105918093	105918093	+	IGR	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111337108	111337108	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165864819	165864819	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	184250488	184250488	+	IGR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	387291	387291	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3904092	3904092	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43589453	43589453	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10665383	10665383	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126848465	126848465	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75216946	75216946	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85383663	85383663	+	IGR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27980193	27980193	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28700408	28700408	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52677006	52677006	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63171077	63171077	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121874725	121874725	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27531482	27531482	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942139	48942139	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56707524	56707524	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910323	62910323	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036061	63036061	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	97067091	97067091	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106208065	106208065	+	IGR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821865	111821865	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50653226	50653226	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77515744	77515744	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33614120	33614120	+	IGR	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34922599	34922599	+	IGR	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43400353	43400353	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115804159	115804159	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120002581	120002581	+	IGR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133406298	133406298	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43890003	43890003	+	IGR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44335820	44335820	+	IGR	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57960225	57960225	+	IGR	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61998761	61998761	+	IGR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65295281	65295281	+	IGR	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368781	89368781	+	IGR	SNP	A	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92643924	92643924	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	22891914	22891914	+	IGR	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177650634	177650634	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	157131778	157131778	+	Silent	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133070757	133070758	+	Intron	DNP	GC	AG	AG			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133044935	133044935	+	3'UTR	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79947017	79947017	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12348415	12348415	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134095109	134095109	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	52991147	52991147	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184648228	184648228	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS2	10352	broad.mit.edu	37	1	119575582	119575582	+	Silent	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177098356	177098356	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20131061	20131061	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1126223	1126223	+	Intron	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1171008	1171008	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241943424	241943424	+	Intron	SNP	T	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124138862	124138862	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR89	112840	broad.mit.edu	37	14	64066246	64066246	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC10B	280664	broad.mit.edu	37	20	44313498	44313498	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38162187	38162187	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108603914	108603914	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO5	57510	broad.mit.edu	37	6	43538674	43538674	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28145343	28145343	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228667	17228667	+	Intron	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF5	81555	broad.mit.edu	37	5	143541875	143541875	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89061323	89061323	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50769377	50769377	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF17	7565	broad.mit.edu	37	19	57932863	57932863	+	3'UTR	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3339736	3339736	+	Silent	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21606300	21606300	+	Intron	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49670145	49670145	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57187793	57187793	+	Silent	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22807089	22807089	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125987892	125987892	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53007912	53007912	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5085737	5085737	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF624	57547	broad.mit.edu	37	17	16527049	16527049	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF669	79862	broad.mit.edu	37	1	247267335	247267335	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF799	90576	broad.mit.edu	37	19	12502033	12502033	+	Silent	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZUFSP	221302	broad.mit.edu	37	6	116968505	116968505	+	Intron	SNP	G	C	C			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52390540	52390540	+	RNA	SNP	C	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31269933	31269933	+	Intron	SNP	A	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80752460	80752460	+	5'UTR	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101528241	101528242	+	5'Flank	DEL	AG	-	-			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22265677	22265677	+	Intron	SNP	A	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31290699	31290699	+	RNA	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	73079093	73079093	+	RNA	SNP	C	G	G			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84945549	84945549	+	RNA	SNP	C	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259840	90259840	+	Intron	SNP	G	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64321533	64321533	+	Intron	SNP	G	T	T			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
