Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7645406	7645406	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215848493	215848493	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215848493	215848493	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	153006227	153006227	+	Intron	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30545854	30545854	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12B	145447	broad.mit.edu	37	14	51352570	51352570	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD12B	145447	broad.mit.edu	37	14	51352570	51352570	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148616889	148616889	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148616889	148616889	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20557512	20557512	+	Intron	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152549330	152549330	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152549330	152549330	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156957808	156957808	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156957808	156957808	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24181281	24181281	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131812891	131812891	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131812891	131812891	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919118	147919118	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147924509	147924509	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919118	147919118	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147924509	147924509	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100349737	100349737	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100349737	100349737	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241812439	241812439	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241812439	241812439	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62284180	62284181	+	3'UTR	DEL	TA	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96954783	96954783	+	3'UTR	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55183490	55183490	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55183490	55183490	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118081271	118081271	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118081271	118081271	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112054471	112054471	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112054471	112054471	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114290996	114290996	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114290996	114290996	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4751201	4751201	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118439	165118439	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118439	165118439	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2	302	broad.mit.edu	37	15	60643886	60643898	+	Intron	DEL	CTGATGTCTACCA	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2	302	broad.mit.edu	37	15	60643886	60643898	+	Intron	DEL	CTGATGTCTACCA	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201468820	201468820	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201468820	201468820	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99059317	99059317	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32915726	32915726	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32915726	32915726	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL5A	26225	broad.mit.edu	37	2	152663470	152663470	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL5A	26225	broad.mit.edu	37	2	152663470	152663470	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100880216	100880216	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100880216	100880216	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66863200	66863200	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66863200	66863200	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62492264	62492264	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF1	466	broad.mit.edu	37	12	51203179	51203183	+	Intron	DEL	TTATT	-	-	rs62928564		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193272693	193272693	+	5'UTR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193272693	193272693	+	5'UTR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42482025	42482025	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84486767	84486767	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77286941	77286941	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77286941	77286941	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142274739	142274740	+	Frame_Shift_Ins	INS	-	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168726189	168726189	+	Silent	SNP	C	A	A	rs144099662	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168726189	168726189	+	Silent	SNP	C	A	A	rs144099662	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32221746	32221746	+	Missense_Mutation	SNP	G	C	C	rs149675901		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69640468	69640468	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69640468	69640468	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31619606	31619606	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFAR	51283	broad.mit.edu	37	16	14738526	14738526	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP1	662	broad.mit.edu	37	5	172578550	172578550	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13604663	13604663	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13604663	13604663	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33589604	33589604	+	Intron	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf60	283677	broad.mit.edu	37	15	73766253	73766253	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1R	715	broad.mit.edu	37	12	7187784	7187785	+	3'UTR	INS	-	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192516153	192516153	+	3'UTR	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50212178	50212178	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86386660	86386660	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1950119	1950119	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44144256	44144256	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19683282	19683282	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZB	832	broad.mit.edu	37	1	19683282	19683282	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL1	883	broad.mit.edu	37	9	131605043	131605043	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL1	883	broad.mit.edu	37	9	131605043	131605043	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102A	92922	broad.mit.edu	37	16	57546617	57546617	+	3'UTR	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58312467	58312467	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58312467	58312467	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26581649	26581649	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26581649	26581649	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88B	283234	broad.mit.edu	37	11	64117013	64117013	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL8	6355	broad.mit.edu	37	17	32646553	32646553	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL8	6355	broad.mit.edu	37	17	32646553	32646553	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158301090	158301090	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7810454	7810454	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7810454	7810454	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD37	951	broad.mit.edu	37	19	49843570	49843570	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD37	951	broad.mit.edu	37	19	49843570	49843570	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50830084	50830085	+	Intron	INS	-	AGA	AGA	rs138783927	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST12	55501	broad.mit.edu	37	7	2473023	2473023	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST12	55501	broad.mit.edu	37	7	2473023	2473023	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4E	26253	broad.mit.edu	37	12	8692341	8692341	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140265316	140265316	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140265316	140265316	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99931800	99931800	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75848105	75848105	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75848105	75848105	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71716763	71716763	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61938806	61938806	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10081540	10081541	+	Intron	INS	-	A	A	rs2287815		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B	1349	broad.mit.edu	37	X	77155038	77155038	+	5'UTR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B	1349	broad.mit.edu	37	X	77155038	77155038	+	5'UTR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115260851	115260851	+	Intron	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046573	3046573	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046573	3046573	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694836	113694836	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113694836	113694836	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75985532	75985532	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41268677	41268678	+	Intron	DEL	AT	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC27	10283	broad.mit.edu	37	5	64081463	64081463	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC27	10283	broad.mit.edu	37	5	64081463	64081463	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85949915	85949915	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAP3	7818	broad.mit.edu	37	1	155671942	155671943	+	Intron	INS	-	A	A	rs143247576		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16646788	16646788	+	5'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16646788	16646788	+	5'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBH	1621	broad.mit.edu	37	9	136517528	136517528	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBH	1621	broad.mit.edu	37	9	136517528	136517528	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBR1	51163	broad.mit.edu	37	3	137880741	137880743	+	In_Frame_Del	DEL	TCG	-	-	rs150114751	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100676288	100676288	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100676288	100676288	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104439295	104439295	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104439295	104439295	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69520532	69520532	+	3'UTR	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714107	110714107	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714107	110714107	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169348574	169348574	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHPS	1725	broad.mit.edu	37	19	12791237	12791237	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61541330	61541330	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61541330	61541330	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51065071	51065071	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51065071	51065071	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172376970	172376970	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172376970	172376970	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101731618	101731618	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68012576	68012576	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63976137	63976137	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63976137	63976137	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCC1	79075	broad.mit.edu	37	8	120856022	120856022	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207564875	207564875	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207583007	207583007	+	5'UTR	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65359397	65359397	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21307744	21307744	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101386442	101386442	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41	2035	broad.mit.edu	37	1	29314234	29314234	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41	2035	broad.mit.edu	37	1	29314234	29314234	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47606164	47606164	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47606164	47606164	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66201731	66201731	+	Missense_Mutation	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66201731	66201731	+	Missense_Mutation	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144940513	144940513	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB3	2065	broad.mit.edu	37	12	56492212	56492212	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44135768	44135768	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44135768	44135768	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46254740	46254740	+	Intron	DEL	C	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068054	190068054	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068054	190068054	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM7A3	89837	broad.mit.edu	37	15	30406088	30406089	+	Intron	INS	-	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	191861713	191861713	+	3'UTR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	191861713	191861713	+	3'UTR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466086	164466086	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164466086	164466086	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279897	152279897	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279897	152279897	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB1	27023	broad.mit.edu	37	15	60297987	60297987	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80544277	80544278	+	Intron	INS	-	A	A	rs149999499	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48512057	48512057	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48512057	48512057	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61898135	61898135	+	Intron	DEL	C	-	-	rs2665836	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151393197	151393197	+	Intron	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976150	46976150	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976150	46976150	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89888768	89888768	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89888768	89888768	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89979017	89979017	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	Intron	INS	-	TAT	TAT			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	907492	907492	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	907492	907492	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89618472	89618472	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCA	25801	broad.mit.edu	37	2	163208879	163208879	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCA	25801	broad.mit.edu	37	2	163208879	163208879	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA2	23062	broad.mit.edu	37	16	23486188	23486188	+	Intron	DEL	A	-	-	rs66856380		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14708814	14708815	+	Intron	DEL	TC	-	-	rs113205021		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6B	55889	broad.mit.edu	37	15	72954797	72954797	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR137B	7107	broad.mit.edu	37	1	236343183	236343183	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR137B	7107	broad.mit.edu	37	1	236343183	236343183	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101969872	101969872	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101969872	101969872	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156533576	156533576	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153214721	153214721	+	3'UTR	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50534448	50534448	+	3'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50534448	50534448	+	3'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83819969	83819969	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83819969	83819969	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGFAC	3083	broad.mit.edu	37	4	3449367	3449367	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210536178	210536179	+	Intron	INS	-	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3D	8351	broad.mit.edu	37	6	26199202	26199202	+	Translation_Start_Site	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3D	8351	broad.mit.edu	37	6	26199202	26199202	+	Translation_Start_Site	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71142250	71142250	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71142250	71142250	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPA1	3113	broad.mit.edu	37	6	33036399	33036400	+	Intron	INS	-	T	T	rs144832637	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26240191	26240191	+	Intron	SNP	C	A	A	rs112694138		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26240191	26240191	+	Intron	SNP	C	A	A	rs112694138		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113965913	113965913	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113965913	113965913	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM1	8519	broad.mit.edu	37	11	314373	314373	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFITM1	8519	broad.mit.edu	37	11	314373	314373	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23381816	23381816	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23381816	23381816	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68675468	68675469	+	Intron	INS	-	T	T	rs34242855		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP1L	196294	broad.mit.edu	37	11	31482158	31482158	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP1L	196294	broad.mit.edu	37	11	31482158	31482158	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62349930	62349930	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62349930	62349930	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41364266	41364266	+	Intron	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGQ	126298	broad.mit.edu	37	19	44096008	44096008	+	3'UTR	DEL	A	-	-	rs150726789		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG2	3714	broad.mit.edu	37	14	105609331	105609331	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG2	3714	broad.mit.edu	37	14	105609331	105609331	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17954485	17954485	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17954485	17954485	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JRKL	8690	broad.mit.edu	37	11	96125307	96125307	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170366496	170366496	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA6	3742	broad.mit.edu	37	12	4920464	4920464	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA6	3742	broad.mit.edu	37	12	4920464	4920464	+	Silent	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120385968	120385969	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120385968	120385969	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693778	88693778	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88693778	88693778	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342563	215342563	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342563	215342563	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD2	23510	broad.mit.edu	37	17	73045381	73045381	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD2	23510	broad.mit.edu	37	17	73045381	73045381	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610285	10610285	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610285	10610285	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650765	142650765	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650765	142650765	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	97000342	97000342	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24820812	24820812	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72293713	72293713	+	Missense_Mutation	SNP	C	G	G	rs12764399	byFrequency;by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109707159	109707159	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109707159	109707159	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39325224	39325224	+	Intron	DEL	C	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55340832	55340832	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL31	401265	broad.mit.edu	37	6	53518838	53518838	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136957874	136957874	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136957874	136957874	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51518734	51518734	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51518734	51518734	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51483661	51483661	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51483661	51483661	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54870255	54870255	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54870255	54870255	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182871967	182871967	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP3	27074	broad.mit.edu	37	3	182871967	182871967	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT1	51451	broad.mit.edu	37	16	25143446	25143446	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169677664	169677664	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169677664	169677664	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226075411	226075411	+	Intron	DEL	C	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70411385	70411385	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148008506	148008506	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5023360	5023360	+	5'UTR	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5023360	5023360	+	5'UTR	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23154716	23154716	+	RNA	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23154716	23154716	+	RNA	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141709451	141709451	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141709451	141709451	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861066	52861067	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861066	52861067	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133623535	133623535	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133623535	133623535	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRSAM1	90678	broad.mit.edu	37	9	130263350	130263350	+	Silent	SNP	T	C	C	rs140336379		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34712504	34712504	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34712504	34712504	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33359878	33359878	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33359878	33359878	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235904814	235904814	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235904814	235904814	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15480556	15480556	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26211971	26211971	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26211971	26211971	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114186352	114186352	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70354597	70354597	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70354597	70354597	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42190313	42190313	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42190313	42190313	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEMO1	51072	broad.mit.edu	37	2	32157106	32157106	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEMO1	51072	broad.mit.edu	37	2	32157106	32157106	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT5D1	196074	broad.mit.edu	37	11	28349811	28349811	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR487A	619555	broad.mit.edu	37	14	101515997	101515997	+	5'Flank	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR487A	619555	broad.mit.edu	37	14	101515997	101515997	+	5'Flank	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54238240	54238240	+	5'Flank	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54238240	54238240	+	5'Flank	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891A	100126341	broad.mit.edu	37	X	145109318	145109318	+	RNA	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891A	100126341	broad.mit.edu	37	X	145109318	145109318	+	RNA	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891B	100126304	broad.mit.edu	37	X	145082660	145082660	+	5'Flank	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR891B	100126304	broad.mit.edu	37	X	145082660	145082660	+	5'Flank	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44642008	44642031	+	In_Frame_Del	DEL	CAGCTGGCCCCACAGGTCCCCCCT	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28194109	28194109	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28194109	28194109	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108746502	108746502	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108746502	108746502	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59863194	59863194	+	3'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59863194	59863194	+	3'UTR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1091579	1091579	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101444	81101444	+	5'Flank	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101444	81101444	+	5'Flank	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16699743	16699743	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145310995	145310995	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF15	284565	broad.mit.edu	37	1	148594621	148594621	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16890853	16890853	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891942	16891942	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144815011	144815011	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73251296	73251296	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52507564	52507564	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52507564	52507564	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821243	5821243	+	Silent	SNP	C	T	T	rs9785605		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821249	5821249	+	Silent	SNP	A	G	G	rs9785509		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56463813	56463813	+	Intron	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15177527	15177529	+	Intron	DEL	TCC	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15177527	15177529	+	Intron	DEL	TCC	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79580446	79580446	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79580446	79580446	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139232196	139232196	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG2	9542	broad.mit.edu	37	5	139232196	139232196	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51056660	51056660	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2289637	2289637	+	Missense_Mutation	SNP	G	A	A	rs115556911	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2289637	2289637	+	Missense_Mutation	SNP	G	A	A	rs115556911	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163313696	163313696	+	Intron	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131726634	131726634	+	Intron	SNP	A	C	C	rs148521271	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62CL	54830	broad.mit.edu	37	X	106396371	106396371	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62CL	54830	broad.mit.edu	37	X	106396371	106396371	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5317415	5317415	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5317415	5317415	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLA1	29789	broad.mit.edu	37	2	174946518	174946518	+	Intron	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10P1	121130	broad.mit.edu	37	12	56031203	56031203	+	Silent	SNP	G	T	T	rs147317388	byFrequency	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10P1	121130	broad.mit.edu	37	12	56031203	56031203	+	Silent	SNP	G	T	T	rs147317388	byFrequency	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789746	6789746	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789746	6789746	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89472722	89472722	+	Intron	DEL	T	-	-	rs148721342		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD6B	84612	broad.mit.edu	37	20	49366455	49366455	+	Silent	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD6B	84612	broad.mit.edu	37	20	49366455	49366455	+	Silent	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127255616	127255616	+	5'UTR	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140616088	140616088	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140616088	140616088	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554370	140554370	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554370	140554370	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93038129	93038129	+	3'UTR	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93038129	93038129	+	3'UTR	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144881004	144881004	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144881004	144881004	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15198524	15198524	+	Intron	SNP	T	C	C	rs62039524		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEPD	5184	broad.mit.edu	37	19	33984175	33984175	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100962496	100962496	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100962496	100962496	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33794405	33794405	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC2	1912	broad.mit.edu	37	1	33794405	33794405	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47894610	47894610	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47894610	47894610	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8626924	8626924	+	Intron	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96081830	96081830	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96081830	96081830	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA3	65977	broad.mit.edu	37	2	179358664	179358664	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA3	65977	broad.mit.edu	37	2	179358664	179358664	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131949243	131949243	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131949243	131949243	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103044228	103044228	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103045419	103045419	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103044228	103044228	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103045419	103045419	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153696766	153696766	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153696766	153696766	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6759163	6759164	+	Intron	DEL	AG	-	-	rs71010912		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24906176	24906176	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24906176	24906176	+	Silent	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103855	53103855	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19571463	19571463	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103906777	103906777	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB3	5544	broad.mit.edu	37	12	11420396	11420396	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB3	5544	broad.mit.edu	37	12	11420396	11420396	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14142945	14142945	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14142945	14142945	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38A	84950	broad.mit.edu	37	1	52871234	52871234	+	Intron	SNP	C	T	T	rs140763730	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31161493	31161493	+	5'Flank	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD13	5719	broad.mit.edu	37	11	237178	237178	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27289032	27289032	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27289032	27289032	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96859541	96859541	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112915395	112915395	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112915395	112915395	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48153035	48153035	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48153035	48153035	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220345342	220345342	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220345342	220345342	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36218054	36218055	+	Intron	INS	-	G	G	rs74042821		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109371850	109371850	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM11	54033	broad.mit.edu	37	21	15596757	15596757	+	Splice_Site	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238729761	238729761	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM44	375316	broad.mit.edu	37	2	238729761	238729761	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELA	5970	broad.mit.edu	37	11	65427296	65427296	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERG	85004	broad.mit.edu	37	12	15370324	15370325	+	Intron	DEL	CA	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108488692	108488692	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108488692	108488692	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63803508	63803509	+	Intron	INS	-	A	A	rs146741816		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN1	114822	broad.mit.edu	37	8	144463542	144463542	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152300263	152300263	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155874531	155874532	+	In_Frame_Ins	INS	-	GTATCCAAA	GTATCCAAA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT1	6016	broad.mit.edu	37	1	155874531	155874532	+	In_Frame_Ins	INS	-	GTATCCAAA	GTATCCAAA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF113A	7737	broad.mit.edu	37	X	119005016	119005016	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF113A	7737	broad.mit.edu	37	X	119005016	119005016	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124756661	124756661	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124756661	124756661	+	Silent	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470626	10470626	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470626	10470626	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11931885	11931885	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11931885	11931885	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY2	55680	broad.mit.edu	37	10	70156583	70156583	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS	6301	broad.mit.edu	37	1	109779253	109779253	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166900385	166900385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166900385	166900385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76878723	76878723	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76878723	76878723	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81953969	81953969	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L	6400	broad.mit.edu	37	14	81953969	81953969	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPSECS	51091	broad.mit.edu	37	4	25158358	25158358	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPSECS	51091	broad.mit.edu	37	4	25160732	25160733	+	Intron	INS	-	A	A	rs34423002		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI1	5274	broad.mit.edu	37	3	167508124	167508124	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI1	5274	broad.mit.edu	37	3	167508124	167508124	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70599479	70599479	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70599479	70599479	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95838116	95838116	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95838116	95838116	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A1	10559	broad.mit.edu	37	6	88210864	88210864	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A1	10559	broad.mit.edu	37	6	88210864	88210864	+	Intron	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E2B	728661	broad.mit.edu	37	1	1599899	1599899	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A2	153201	broad.mit.edu	37	5	150696301	150696302	+	3'UTR	INS	-	AA	AA	rs33912867		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205760707	205760707	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205760707	205760707	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904436	144904436	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904436	144904436	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328297	88328297	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328860	88328860	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328297	88328297	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328860	88328860	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57846577	57846577	+	Intron	DEL	C	-	-	rs113521063		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160141159	160141159	+	Intron	SNP	G	T	T	rs79553148		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNUPN	10073	broad.mit.edu	37	15	75901825	75901825	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX24	28966	broad.mit.edu	37	5	122281813	122281813	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX24	28966	broad.mit.edu	37	5	122281813	122281813	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12571499	12571500	+	Intron	INS	-	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107022018	107022018	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107022018	107022018	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101232722	101232724	+	Intron	DEL	CTT	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49048274	49048274	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64491003	64491003	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSU72	29101	broad.mit.edu	37	1	1479105	1479106	+	Intron	INS	-	CT	CT	rs5772046		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220685	1220685	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220685	1220685	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48848037	48848037	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48848037	48848037	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134925508	134925508	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134925508	134925508	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRC	161497	broad.mit.edu	37	15	43892287	43892287	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRC	161497	broad.mit.edu	37	15	43892287	43892287	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152770832	152770832	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152770832	152770832	+	Intron	SNP	A	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52901847	52901847	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	52901847	52901847	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133473595	133473595	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133473595	133473595	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88485519	88485519	+	Silent	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TH	7054	broad.mit.edu	37	11	2189322	2189322	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TH	7054	broad.mit.edu	37	11	2189322	2189322	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167021887	167021888	+	Intron	DNP	CC	AA	AA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167021887	167021888	+	Intron	DNP	CC	AA	AA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF5	9032	broad.mit.edu	37	17	4675060	4675061	+	5'Flank	INS	-	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226034840	226034842	+	In_Frame_Del	DEL	CTG	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15B	286527	broad.mit.edu	37	X	103216789	103216789	+	5'Flank	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15B	286527	broad.mit.edu	37	X	103216789	103216789	+	5'Flank	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93621998	93621998	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43720172	43720172	+	Intron	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578536	7578536	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578536	7578536	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710459	113710459	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710467	113710467	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710675	113710675	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710973	113710973	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711029	113711029	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711154	113711154	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715134	113715134	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715147	113715147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715184	113715184	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715249	113715249	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715290	113715290	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715970	113715970	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113717796	113717796	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113717996	113717996	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113718056	113718056	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113722337	113722337	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728670	113728670	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728733	113728733	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728836	113728836	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113729532	113729532	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113729841	113729841	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710459	113710459	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710467	113710467	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113710973	113710973	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711029	113711029	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711154	113711154	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113715970	113715970	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113717996	113717996	+	Silent	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113718056	113718056	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113722337	113722337	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728670	113728670	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728733	113728733	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113728836	113728836	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113729841	113729841	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72338007	72338007	+	Intron	SNP	A	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	13978103	13978103	+	5'Flank	SNP	C	A	A	rs148026806	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769002	31769002	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769002	31769002	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179432140	179432140	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179614601	179614601	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179432140	179432140	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179614601	179614601	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72178784	72178784	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72178784	72178784	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19448475	19448475	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19448475	19448475	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54793103	54793103	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54793103	54793103	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8993490	8993490	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8993490	8993490	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102751583	102751583	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50149461	50149461	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3416893	3416893	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66039732	66039732	+	IGR	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928239	86928239	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20250565	20250565	+	IGR	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33498016	33498016	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46403689	46403689	+	IGR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15004563	15004563	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4235950	4235950	+	IGR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873093	29873093	+	IGR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349647	16349647	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349649	16349649	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35898151	35898151	+	IGR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107087414	107087415	+	IGR	INS	-	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110766920	110766920	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052992	195052992	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91925075	91925075	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384302	125384302	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66960264	66960264	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451882	15451882	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23689440	23689440	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56613826	56613826	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598287	93598287	+	IGR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598311	93598311	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144706994	144706994	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148347303	148347303	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665233	56665233	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63391975	63391975	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84675172	84675172	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	101801798	101801798	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134743998	134743998	+	IGR	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149399384	149399384	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36229306	36229306	+	IGR	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97645466	97645466	+	IGR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	3416893	3416893	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66039732	66039732	+	IGR	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928239	86928239	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15457565	15457566	+	IGR	DEL	AC	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399771	32399772	+	IGR	DEL	TG	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823636	32823637	+	IGR	INS	-	C	C	rs112857933		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33498016	33498016	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33941856	33941856	+	IGR	DEL	G	-	-	rs75915968	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21518930	21518930	+	IGR	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19944259	19944260	+	IGR	DEL	GT	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20634038	20634039	+	IGR	DEL	TG	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121485233	121485234	+	IGR	INS	-	C	C	rs28970937		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192685812	192685812	+	IGR	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4235950	4235950	+	IGR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873093	29873093	+	IGR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349647	16349647	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349649	16349649	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110766920	110766920	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052992	195052992	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91925075	91925075	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384302	125384302	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66960264	66960264	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451882	15451882	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56613826	56613826	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160133724	160133725	+	IGR	INS	-	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598287	93598287	+	IGR	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93598311	93598311	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148347303	148347303	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665233	56665233	+	IGR	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68438558	68438560	+	IGR	DEL	CTT	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84675172	84675172	+	IGR	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149399384	149399384	+	IGR	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36229306	36229306	+	IGR	SNP	G	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97645466	97645466	+	IGR	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108303377	108303377	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108303377	108303377	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEZT	55591	broad.mit.edu	37	12	95656581	95656585	+	Intron	DEL	AAAAT	-	-	rs111271796		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH7P	653635	broad.mit.edu	37	1	14948	14948	+	Intron	SNP	G	A	A	rs148911281	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128879333	128879333	+	Intron	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61721151	61721151	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61721151	61721151	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO4	64328	broad.mit.edu	37	13	21374920	21374920	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO4	64328	broad.mit.edu	37	13	21374920	21374920	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB24	9841	broad.mit.edu	37	6	109802316	109802316	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB24	9841	broad.mit.edu	37	6	109802316	109802316	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138768512	138768512	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC13	54503	broad.mit.edu	37	11	19184974	19184974	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC13	54503	broad.mit.edu	37	11	19184974	19184974	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42717213	42717213	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42717213	42717213	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24310436	24310436	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24310436	24310436	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804461	22804462	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804461	22804462	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934762	30934762	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF600	162966	broad.mit.edu	37	19	53277711	53277712	+	Intron	INS	-	A	A	rs35098902		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF74	7625	broad.mit.edu	37	22	20760447	20760447	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57176832	57176832	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21211214	21211214	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21211214	21211214	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489372	20489372	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25485066	25485066	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741149	34741149	+	5'Flank	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45127332	45127332	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89378223	89378223	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89987207	89987207	+	Intron	SNP	C	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044446	90044446	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90047742	90047742	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259697	90259697	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31270080	31270081	+	In_Frame_Ins	INS	-	AAA	AAA	rs112314315		TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31289663	31289663	+	Intron	DEL	A	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489372	20489372	+	Intron	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25485066	25485066	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29110406	29110406	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741149	34741149	+	5'Flank	SNP	T	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45127332	45127332	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14218424	14218424	+	5'Flank	SNP	T	C	C	rs147131293	by1000genomes	TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17385500	17385500	+	5'Flank	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89378223	89378223	+	Intron	SNP	T	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044446	90044446	+	Intron	SNP	G	A	A			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90047742	90047742	+	Intron	SNP	C	G	G			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259697	90259697	+	Intron	SNP	C	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	154578866	154578866	+	Intron	DEL	T	-	-			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	229389	229390	+	5'Flank	INS	-	TACCCC	TACCCC			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
