Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7743287	7743287	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125613889	125613889	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67283904	67283904	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48226557	48226557	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC6P2	730013	broad.mit.edu	37	16	14916786	14916786	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43705992	43705992	+	Silent	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44065079	44065079	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44065837	44065837	+	5'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100568829	100568829	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179095584	179095584	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134131327	134131327	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31439050	31439050	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61566523	61566523	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT7	11332	broad.mit.edu	37	1	6399565	6399565	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132086442	132086442	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20565074	20565074	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTBL2	345651	broad.mit.edu	37	5	56777979	56777979	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69354646	69354646	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207435496	207435496	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39089468	39089468	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106054658	106054658	+	RNA	SNP	T	G	G	rs114771275	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106054663	106054663	+	RNA	SNP	C	T	T	rs116634885	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106237802	106237802	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106539483	106539483	+	RNA	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106725498	106725498	+	RNA	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107170426	107170426	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33637671	33637671	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33649781	33649781	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33662170	33662170	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5200460	5200460	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956599	128956599	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28212681	28212681	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28302123	28302123	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7804849	7804849	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70919661	70919661	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100131598	100131598	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112106586	112106586	+	5'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17375401	17375401	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSP	51327	broad.mit.edu	37	16	31539549	31539549	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIMP2	7965	broad.mit.edu	37	7	6054707	6054707	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77763165	77763165	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5041214	5041214	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C4	1109	broad.mit.edu	37	10	5248376	5248376	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A2	8574	broad.mit.edu	37	1	19634651	19634651	+	Splice_Site	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105268885	105268885	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH16A1	126133	broad.mit.edu	37	19	49967301	49967301	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125831601	125831601	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112223000	112223000	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOXE3	59344	broad.mit.edu	37	17	8006652	8006652	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21887620	21887620	+	Missense_Mutation	SNP	G	T	T	rs121918003		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112048227	112048227	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104116939	104116939	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL4	51129	broad.mit.edu	37	19	8438541	8438541	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61815745	61815745	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14798275	14798275	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20A4	728747	broad.mit.edu	37	9	69390954	69390954	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95522727	95522727	+	RNA	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33110134	33110134	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37453988	37453988	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82917013	82917013	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69271872	69271872	+	Splice_Site	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124724986	124724986	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA7	310	broad.mit.edu	37	10	75156236	75156236	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201473801	201473801	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6423818	6423818	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC2	344	broad.mit.edu	37	19	45452505	45452505	+	Nonstop_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116701581	116701581	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOE	348	broad.mit.edu	37	19	45412464	45412465	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36179480	36179481	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47630428	47630428	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP1	392	broad.mit.edu	37	11	46702649	46702649	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49662077	49662077	+	Intron	SNP	G	T	T	rs41311230		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120329011	120329011	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135827292	135827293	+	Intron	DNP	GG	TC	TC			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL16	339231	broad.mit.edu	37	17	79650870	79650870	+	Translation_Start_Site	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23270395	23270395	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28151320	28151320	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT	405	broad.mit.edu	37	1	150801768	150801768	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSK	153642	broad.mit.edu	37	5	94922387	94922387	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	100978896	100978896	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNSD1	54529	broad.mit.edu	37	2	190532188	190532188	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62430585	62430585	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197055854	197055854	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197073257	197073257	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119858343	119858343	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124373909	124373909	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64665151	64665151	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL2	64225	broad.mit.edu	37	2	38536571	38536571	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160105558	160105558	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28893745	28893745	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1B1	525	broad.mit.edu	37	2	71187162	71187162	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52539088	52539088	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32969823	32969823	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT3	8703	broad.mit.edu	37	1	161142001	161142001	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT5	9334	broad.mit.edu	37	20	48252783	48252783	+	3'UTR	DEL	A	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHD1	22893	broad.mit.edu	37	15	40757633	40757633	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32203823	32203823	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102942739	102942739	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171492687	171492687	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L11	10018	broad.mit.edu	37	2	111881467	111881467	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136594278	136594278	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18234682	18234682	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN3	55909	broad.mit.edu	37	8	22494503	22494503	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31609550	31609550	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65882262	65882262	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49700582	49700582	+	Missense_Mutation	SNP	G	T	T	rs140013456	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107937905	107937905	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108042999	108042999	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTD	686	broad.mit.edu	37	3	15677058	15677058	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BYSL	705	broad.mit.edu	37	6	41897940	41897940	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16744381	16744381	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf1	64776	broad.mit.edu	37	11	111750182	111750182	+	5'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40114727	40114727	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf34	79866	broad.mit.edu	37	13	73320191	73320191	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91626659	91626659	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34190551	34190551	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8138501	8138501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf99	100141515	broad.mit.edu	37	17	76153422	76153422	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55670878	55670878	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1GALT1	56913	broad.mit.edu	37	7	7283154	7283154	+	Splice_Site	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179497545	179497545	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75086563	75086563	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf166	128826	broad.mit.edu	37	20	61167750	61167750	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31652244	31652244	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26663341	26663341	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf31	79625	broad.mit.edu	37	4	121966792	121966792	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165713992	165713992	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165714099	165714099	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47847511	47847511	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88125318	88125318	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf70	55780	broad.mit.edu	37	6	170160108	170160108	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40899957	40899957	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906573	120906573	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89897597	89897597	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39308436	39308436	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf119	375757	broad.mit.edu	37	9	131050954	131050954	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf30	91283	broad.mit.edu	37	9	103213257	103213257	+	3'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf95	54981	broad.mit.edu	37	9	77692296	77692296	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227153532	227153532	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140968192	140968192	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40059639	40059639	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62450996	62450996	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209779580	209779580	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1L1	23271	broad.mit.edu	37	1	200819110	200819110	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30881654	30881655	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35910605	35910605	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78175572	78175572	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48733993	48733993	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN2	57513	broad.mit.edu	37	17	73497241	73497241	+	Missense_Mutation	SNP	C	A	A	rs146703288		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL1	883	broad.mit.edu	37	9	131597812	131597812	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66721318	66721318	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179720986	179720986	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16612677	16612677	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144A	9720	broad.mit.edu	37	17	16612733	16612733	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC61	729440	broad.mit.edu	37	19	46519634	46519634	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74A	90557	broad.mit.edu	37	2	132289308	132289308	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130898051	130898051	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118753763	118753763	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2499029	2499029	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR8	1237	broad.mit.edu	37	3	39374724	39374724	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74512935	74512935	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7528081	7528081	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66481710	66481710	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135741115	135741115	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100950007	100950007	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227257519	227257519	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24498415	24498415	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44869576	44869576	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73548714	73548714	+	Silent	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73548780	73548780	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176022636	176022636	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15792622	15792622	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48680562	48680562	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135942538	135942538	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117279605	117279605	+	Splice_Site	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	179989875	179989875	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117149094	117149094	+	Missense_Mutation	SNP	G	T	T	rs121909025		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50854760	50854760	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6170448	6170448	+	Intron	DEL	A	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40161981	40161981	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKB	1120	broad.mit.edu	37	22	51019830	51019830	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184106762	184106762	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671151	45671151	+	3'UTR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46806337	46806337	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLC	1178	broad.mit.edu	37	19	40225731	40225731	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN8	9073	broad.mit.edu	37	21	31587816	31587816	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4E	26253	broad.mit.edu	37	12	8688715	8688715	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155233697	155233697	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLOCK	9575	broad.mit.edu	37	4	56336954	56336954	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	98996631	98996631	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74350797	74350797	+	Splice_Site	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997225	146997225	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125671579	125671579	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101759435	101759435	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32138038	32138038	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32155342	32155342	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70847569	70847569	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139790736	139790736	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137716553	137716554	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238245036	238245036	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48619722	48619722	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61459369	61459369	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160287171	160287171	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS3	8533	broad.mit.edu	37	17	17152296	17152296	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS5	10987	broad.mit.edu	37	8	67970272	67970272	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7A	50813	broad.mit.edu	37	12	6840277	6840277	+	3'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ4	51117	broad.mit.edu	37	9	131095742	131095742	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47625744	47625744	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2A	7464	broad.mit.edu	37	9	100893276	100893276	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4466427	4466427	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130027667	130027667	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596504	148596504	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83221230	83221230	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69279726	69279726	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50204052	50204052	+	Silent	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT2	1376	broad.mit.edu	37	1	53676038	53676038	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49698963	49698963	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNN	49860	broad.mit.edu	37	1	152382335	152382335	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153923813	153923813	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGB	1419	broad.mit.edu	37	2	209010452	209010452	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43650878	43650878	+	Missense_Mutation	SNP	G	T	T	rs150048164		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34554703	34554703	+	Silent	SNP	C	A	A	rs144913200	byFrequency;by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113348905	113348905	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113599546	113599546	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN1S1	1446	broad.mit.edu	37	4	70802196	70802196	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1L	122011	broad.mit.edu	37	13	37679325	37679325	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75983101	75983101	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77455261	77455261	+	Silent	SNP	G	T	T	rs139441883		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57564429	57564429	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11412268	11412268	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSF	8722	broad.mit.edu	37	11	66335003	66335003	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432096	117432097	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL2	8453	broad.mit.edu	37	10	35338533	35338533	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101842076	101842076	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf27	25763	broad.mit.edu	37	X	37850387	37850387	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96612523	96612523	+	Missense_Mutation	SNP	G	T	T	rs138112316		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135368948	135368948	+	3'UTR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47466782	47466782	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59409192	59409192	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72249456	72249456	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6449551	6449551	+	Missense_Mutation	SNP	G	A	A	rs138713047	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122075514	122075514	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176887426	176887426	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8	50717	broad.mit.edu	37	1	160210023	160210023	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31329387	31329387	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38110567	38110567	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908282	103908282	+	Silent	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49226401	49226401	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74123487	74123487	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF6	50619	broad.mit.edu	37	6	35280244	35280244	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6794243	6794243	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB127	140850	broad.mit.edu	37	20	138186	138186	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	65998352	65998352	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41590875	41590875	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61526555	61526555	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178675	223178676	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBX1	127343	broad.mit.edu	37	1	46976740	46976740	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88580762	88580762	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTA2	63950	broad.mit.edu	37	1	50885323	50885323	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70231550	70231550	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124350393	124350393	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7662780	7662780	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132218620	132218620	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC22	79962	broad.mit.edu	37	12	49742639	49742639	+	5'UTR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM2	1785	broad.mit.edu	37	19	10916669	10916669	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68026107	68026107	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116497264	116497264	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116497481	116497481	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116535446	116535446	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154519680	154519680	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154684566	154684566	+	3'UTR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	63977672	63977672	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32902281	32902281	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56468675	56468675	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56765373	56765373	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP10	11221	broad.mit.edu	37	1	221912759	221912759	+	Missense_Mutation	SNP	T	A	A	rs148718278		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95657482	95657482	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4708160	4708160	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108373221	108373221	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	183967486	183967486	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233347707	233347707	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1G	1937	broad.mit.edu	37	11	62340229	62340229	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB10	100130771	broad.mit.edu	37	7	105223131	105223131	+	5'Flank	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28417673	28417673	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38352151	38352151	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184043360	184043360	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC2	60528	broad.mit.edu	37	17	12905609	12905609	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50661108	50661108	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107535729	107535729	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6937694	6937694	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENKUR	219670	broad.mit.edu	37	10	25284575	25284575	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132054698	132054698	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5395092	5395092	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5443878	5443878	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920438	134920438	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX4	253152	broad.mit.edu	37	1	92511124	92511125	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESF1	51575	broad.mit.edu	37	20	13756763	13756763	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242042435	242042435	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	633069	633069	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC3	11336	broad.mit.edu	37	5	466932	466932	+	Silent	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133682312	133682312	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL1	2134	broad.mit.edu	37	1	26349661	26349661	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133802480	133802480	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159197436	159197436	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14816193	14816193	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131A	131408	broad.mit.edu	37	3	184060021	184060021	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153C	653316	broad.mit.edu	37	5	177468724	177468724	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29222107	29222107	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68194544	68194544	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45A	404636	broad.mit.edu	37	10	120889070	120889070	+	Silent	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73B	84895	broad.mit.edu	37	9	131825932	131825932	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43625471	43625471	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33820696	33820696	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10106096	10106096	+	Silent	SNP	C	T	T	rs138189144	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45669130	45669130	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187522452	187522452	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150911188	150911188	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126411064	126411064	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92344055	92344055	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48744717	48744717	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48755419	48755419	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48776235	48776235	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102608486	102608486	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL21	26223	broad.mit.edu	37	5	135276978	135276978	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147793698	147793698	+	Splice_Site	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO41	150726	broad.mit.edu	37	2	73490964	73490964	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD1	89848	broad.mit.edu	37	5	141019878	141019878	+	3'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157771368	157771368	+	Splice_Site	SNP	C	A	A	rs148618017	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	60091726	60091726	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97063749	97063749	+	3'UTR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325867	152325867	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276015	152276015	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286475	152286475	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40504	284085	broad.mit.edu	37	17	26604298	26604298	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307799	240307799	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159653826	159653826	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114304340	114304340	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272055	52272055	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79458272	79458272	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29632904	29632904	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135440223	135440223	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13712593	13712594	+	Intron	DEL	AC	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTCD	10841	broad.mit.edu	37	21	47571634	47571634	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTMT	94033	broad.mit.edu	37	5	121187547	121187547	+	5'Flank	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ2	29960	broad.mit.edu	37	7	2278757	2278757	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39170376	39170376	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46009082	46009082	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD10	11211	broad.mit.edu	37	12	130648268	130648268	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G6PC3	92579	broad.mit.edu	37	17	42153250	42153250	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47408631	47408631	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	898374	898374	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPDH	2597	broad.mit.edu	37	12	6646577	6646577	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8105946	8105946	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163004007	163004007	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163004009	163004009	+	Silent	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48414410	48414410	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN4	50628	broad.mit.edu	37	17	650508	650508	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995316	61995316	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L	79411	broad.mit.edu	37	2	220107620	220107620	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42187809	42187809	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183909713	183909713	+	Splice_Site	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFB	2764	broad.mit.edu	37	14	54948825	54948825	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220366738	220366738	+	Frame_Shift_Del	DEL	T	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT1	2779	broad.mit.edu	37	3	50232090	50232090	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131019541	131019541	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC2	221914	broad.mit.edu	37	7	99773471	99773471	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23299726	23299726	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR109A	338442	broad.mit.edu	37	12	123186931	123186931	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM2	29899	broad.mit.edu	37	1	109445818	109445818	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153029928	153029928	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31066121	31066121	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13720066	13720066	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104449572	104449572	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130777851	130777851	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52700880	52700880	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110212024	110212024	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108628439	108628439	+	Missense_Mutation	SNP	G	T	T	rs55735218		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189452679	189452679	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMB	3002	broad.mit.edu	37	14	25103412	25103412	+	Translation_Start_Site	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39880994	39880994	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCCS	3052	broad.mit.edu	37	X	11136729	11136729	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121356146	121356146	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43508595	43508595	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124739887	124739887	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92848879	92848879	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P2	400322	broad.mit.edu	37	15	23316097	23316097	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28491134	28491134	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81374493	81374493	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858490	149858490	+	5'Flank	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858839	149858839	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176981700	176981700	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6458780	6458780	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193051	152193051	+	Nonsense_Mutation	SNP	C	A	A	rs140445785		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193307	152193307	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114378474	114378474	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119988122	119988122	+	3'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B7	80270	broad.mit.edu	37	16	30999168	30999168	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161577761	161577761	+	3'UTR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92502209	92502209	+	3'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYOU1	10525	broad.mit.edu	37	11	118926190	118926190	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220287811	220287811	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	94985761	94985761	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82922532	82922532	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94267435	94267435	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65681001	65681001	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102811579	102811579	+	3'UTR	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23401270	23401270	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160469384	160469384	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP1	3484	broad.mit.edu	37	7	45930284	45930284	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201182572	201182572	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118621429	118621429	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133799727	133799727	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1A	3552	broad.mit.edu	37	2	113539432	113539432	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55201862	55201862	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10787707	10787707	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10787726	10787726	+	Intron	SNP	G	T	T	rs113871773		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10794136	10794136	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38341286	38341286	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234072310	234072310	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47296908	47296908	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45363775	45363775	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH3	3699	broad.mit.edu	37	3	52836352	52836352	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54776442	54776442	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35183319	35183319	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5029787	5029787	+	Silent	SNP	C	T	T	rs139093384	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP3	282973	broad.mit.edu	37	10	133948583	133948583	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27066137	27066137	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5153913	5153913	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444222	75444222	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444888	75444888	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88654247	88654247	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342594	215342594	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440470	99440470	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36693935	36693935	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV1	27012	broad.mit.edu	37	8	110984922	110984922	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM1A	23028	broad.mit.edu	37	1	23382500	23382500	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55968293	55968293	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319L	79932	broad.mit.edu	37	1	35940567	35940567	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24582479	24582479	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0895	23366	broad.mit.edu	37	7	36373515	36373515	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72292490	72292490	+	Silent	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1644	85352	broad.mit.edu	37	22	44681232	44681232	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8919884	8919884	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72347062	72347062	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10421840	10421840	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57974797	57974797	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169993778	169993778	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55287049	55287049	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55270415	55270415	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136969802	136969802	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK11	11012	broad.mit.edu	37	19	51530735	51530735	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51381196	51381196	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK9	284366	broad.mit.edu	37	19	51506892	51506892	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT36	8689	broad.mit.edu	37	17	39644973	39644973	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT37	8688	broad.mit.edu	37	17	39580631	39580631	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52941574	52941574	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-7	337974	broad.mit.edu	37	21	31933420	31933420	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP8-1	337879	broad.mit.edu	37	21	32185435	32185435	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25924462	25924462	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130399809	130399809	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129511227	129511227	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107572810	107572810	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183091404	183091404	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133914126	133914126	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	37005423	37005423	+	3'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3A	353142	broad.mit.edu	37	1	152595394	152595394	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32745303	32745303	+	Silent	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD1	388633	broad.mit.edu	37	1	54474854	54474854	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226075392	226075392	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156763046	156763046	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197881490	197881490	+	5'Flank	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55112042	55112042	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143933	55143933	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55146786	55146786	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB3	11025	broad.mit.edu	37	19	54721148	54721148	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55177730	55177730	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55179365	55179365	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50589612	50589612	+	Splice_Site	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58834830	58834830	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPE	3991	broad.mit.edu	37	19	42912283	42912283	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO3	55885	broad.mit.edu	37	12	16704097	16704097	+	3'UTR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45625367	45625367	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC254559	254559	broad.mit.edu	37	15	89911361	89911361	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC402644	402644	broad.mit.edu	37	7	28319036	28319036	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78215226	78215226	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62775293	62775293	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400795	40400795	+	Missense_Mutation	SNP	C	A	A	rs149939756		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141291575	141291575	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141299393	141299393	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12353089	12353089	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196388616	196388616	+	3'UTR	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC55	219527	broad.mit.edu	37	11	56954605	56954605	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21196363	21196363	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41799232	41799232	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	239215	239215	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24750622	24750622	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160732242	160732242	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD5	284348	broad.mit.edu	37	19	44301984	44301984	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYSMD3	116068	broad.mit.edu	37	5	89815303	89815303	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL1	84569	broad.mit.edu	37	10	29599235	29599235	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39844975	39844975	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAK	4117	broad.mit.edu	37	6	10764813	10764813	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67520947	67520947	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK1IP1L	93487	broad.mit.edu	37	14	55518564	55518564	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12975596	12975596	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47802004	47802004	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD3	53615	broad.mit.edu	37	19	1578464	1578464	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138680577	138680577	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47695345	47695345	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94050456	94050456	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42854214	42854214	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158543761	158543761	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141784296	141784296	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103547259	103547259	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18347536	18347536	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1246	100302142	broad.mit.edu	37	2	177465790	177465790	+	5'Flank	SNP	G	T	T	rs111548281	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1283-2	100302205	broad.mit.edu	37	19	54260099	54260099	+	5'Flank	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129905011	129905011	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129913540	129913540	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151945170	151945170	+	Silent	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21903708	21903708	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118370256	118370256	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108719519	108719519	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL55	128308	broad.mit.edu	37	1	228294558	228294558	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS27	23107	broad.mit.edu	37	5	71516727	71516727	+	3'UTR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSX1	4487	broad.mit.edu	37	4	4864535	4864535	+	Missense_Mutation	SNP	C	A	A	rs104893850		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532599	100532599	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9013855	9013855	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9084723	9084723	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1263496	1263496	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42752078	42752078	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70162611	70162611	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3240552	3240552	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77779653	77779653	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYD88	4615	broad.mit.edu	37	3	38182678	38182678	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15815397	15815397	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10433111	10433111	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10450698	10450698	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10545805	10545805	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23876300	23876300	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10322075	10322076	+	Frame_Shift_Ins	INS	-	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46899711	46899711	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45291053	45291053	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLIP	29116	broad.mit.edu	37	6	16145361	16145361	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26423257	26423257	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26434414	26434414	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26463396	26463396	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2088653	2088653	+	Nonsense_Mutation	SNP	A	T	T	rs76960308	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201757598	201757598	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBL1	4681	broad.mit.edu	37	1	19934752	19934752	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16911788	16911788	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134063940	134063941	+	Missense_Mutation	DNP	CC	GA	GA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158456862	158456862	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF4	4689	broad.mit.edu	37	22	37268330	37268330	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCSTN	23385	broad.mit.edu	37	1	160313247	160313247	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDE1	54820	broad.mit.edu	37	16	15761018	15761018	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	206994878	206994878	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27204002	27204002	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101574101	101574101	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGRN	51335	broad.mit.edu	37	15	90808965	90808965	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236189475	236189475	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777333	63777333	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50664048	50664048	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD1	85407	broad.mit.edu	37	16	50667195	50667195	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7065314	7065314	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55493713	55493713	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56228067	56228068	+	Intron	INS	-	A	A	rs117307800	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15183394	15183394	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26087144	26087144	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36326473	36326473	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115412813	115412813	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107799647	107799647	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105168969	105168969	+	Silent	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11802031	11802031	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131735483	131735483	+	Silent	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134073026	134073026	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP54	53371	broad.mit.edu	37	4	77057381	77057381	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL2	11097	broad.mit.edu	37	7	23221741	23221741	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102339665	102339665	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101096645	101096645	+	Splice_Site	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228479799	228479799	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131246279	131246279	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78381548	78381548	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H5	284433	broad.mit.edu	37	19	15905246	15905246	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158389821	158389821	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390091	158390091	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450078	158450078	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450652	158450652	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123847504	123847504	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920769	247920769	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A2	442361	broad.mit.edu	37	7	143807463	143807463	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436663	248436663	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525228	248525228	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A4	390756	broad.mit.edu	37	17	3214440	3214440	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974366	49974366	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340043	55340043	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413472	22413472	+	5'Flank	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382452	22382452	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4944910	4944910	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080148	5080148	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59132182	59132182	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944982	55944982	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517803	158517803	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8S1	341568	broad.mit.edu	37	12	48919525	48919525	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55523851	55523851	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL2	9885	broad.mit.edu	37	20	60859328	60859328	+	Intron	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL2	9885	broad.mit.edu	37	20	60864347	60864347	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24874132	24874132	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21690098	21690098	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17664568	17664568	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900009	112900009	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52268474	52268474	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51532176	51532176	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP16	54956	broad.mit.edu	37	15	65553264	65553264	+	Silent	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91715112	91715112	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873602	91873602	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663320	99663320	+	Silent	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215061	140215061	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB19P	84054	broad.mit.edu	37	5	140621076	140621076	+	3'UTR	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140482066	140482066	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531059	140531059	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559195	140559195	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56140241	56140241	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82538271	82538271	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82584133	82584133	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82764398	82764398	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233225832	233225832	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5534886	5534886	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66384348	66384348	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	619540	619540	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95421882	95421882	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44151935	44151935	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122825780	122825781	+	Intron	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31847681	31847681	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57327815	57327815	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153270495	153270495	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153277377	153277377	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC1	1911	broad.mit.edu	37	12	9089500	9089500	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKG1	5260	broad.mit.edu	37	7	56149336	56149336	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26890333	26890333	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71605890	71605890	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47921703	47921703	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2141950	2141950	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2147731	2147731	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950220	198950220	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171395446	171395446	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD2	5338	broad.mit.edu	37	17	4720173	4720173	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA4	57664	broad.mit.edu	37	19	49351253	49351253	+	Silent	SNP	C	A	A	rs148488396		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16838765	16838765	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	161838	161838	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1P	440456	broad.mit.edu	37	17	62796430	62796430	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131866447	131866447	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192544	132192544	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMM1	5372	broad.mit.edu	37	22	41974915	41974915	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L3	5387	broad.mit.edu	37	7	75145275	75145275	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160240112	160240112	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118305676	118305677	+	Intron	DNP	TG	CT	CT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118314905	118314905	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84614519	84614519	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2159472	2159474	+	Intron	DEL	AAG	-	-	rs71644319		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42603794	42603794	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIAL4G	644591	broad.mit.edu	37	1	143767783	143767783	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL1	51645	broad.mit.edu	37	6	36839473	36839473	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPPDE1	51029	broad.mit.edu	37	1	244849997	244849997	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12888640	12888640	+	5'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12939843	12939843	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524368	23524368	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68992817	68992817	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRF1	5551	broad.mit.edu	37	10	72360525	72360525	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG3	53632	broad.mit.edu	37	2	219689207	219689207	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062549	76062549	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4	9128	broad.mit.edu	37	9	116052669	116052669	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458475	142458475	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43349541	43349541	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43702175	43702175	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679369	43679369	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43414671	43414671	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43529212	43529212	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43601551	43601551	+	Intron	SNP	C	A	A	rs149650882	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA7	5688	broad.mit.edu	37	20	60715998	60715998	+	Silent	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMG1	8624	broad.mit.edu	37	21	40550484	40550484	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96863802	96863802	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96863808	96863808	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPDC1	138639	broad.mit.edu	37	9	96863839	96863839	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112166750	112166750	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18771101	18771102	+	Intron	DNP	CC	AA	AA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44019070	44019070	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158334246	158334246	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15747809	15747809	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40710730	40710730	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29606249	29606249	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651876	121651876	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109381205	109381205	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204305195	204305195	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25611292	25611292	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33783856	33783856	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP5	83758	broad.mit.edu	37	12	7280929	7280929	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103205757	103205757	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103338439	103338439	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117249929	117249929	+	Silent	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11527319	11527319	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGN	9104	broad.mit.edu	37	X	46949284	46949284	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3429845	3429845	+	Silent	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227773518	227773518	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN1	114822	broad.mit.edu	37	8	144464814	144464814	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILPL2	196383	broad.mit.edu	37	12	123915011	123915011	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105906	105105906	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43384672	43384672	+	3'UTR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF130	55819	broad.mit.edu	37	5	179440335	179440335	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF151	146310	broad.mit.edu	37	16	2017007	2017007	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74150404	74150404	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF183	138065	broad.mit.edu	37	9	116060272	116060272	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24618772	24618772	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77671594	77671594	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467736	10467736	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21795868	21795868	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113303159	113303159	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114354885	114354885	+	Silent	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12142251	12142251	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38997148	38997148	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39001357	39001357	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39034477	39034477	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237813134	237813134	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237872184	237872184	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33905465	33905465	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34093136	34093136	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA2	6289	broad.mit.edu	37	11	18269519	18269519	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB2	9667	broad.mit.edu	37	19	5612565	5612565	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55751268	55751268	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCIN	85477	broad.mit.edu	37	7	12679892	12679892	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166908495	166908495	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166245393	166245393	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38648368	38648368	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCPEP1	59342	broad.mit.edu	37	17	55065245	55065245	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35208301	35208301	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139360558	139360558	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELL	6402	broad.mit.edu	37	1	169680614	169680614	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185347571	185347571	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42385435	42385435	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43142612	43142613	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61305132	61305132	+	Missense_Mutation	SNP	C	A	A	rs144633926	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61166612	61166612	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57367632	57367640	+	In_Frame_Del	DEL	CAGATTCTC	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47162939	47162939	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29899882	29899882	+	Missense_Mutation	SNP	C	A	A	rs143818590	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198274523	198274523	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70602365	70602365	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52000183	52000183	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC14	100049587	broad.mit.edu	37	19	52146749	52146749	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51650594	51650594	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75668239	75668239	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232564324	232564324	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735354	164735354	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160604432	160604432	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43249369	43249369	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19520789	19520789	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A2	83884	broad.mit.edu	37	5	140683346	140683346	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45564935	45564935	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5339968	5339968	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A4	222962	broad.mit.edu	37	7	5340083	5340083	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42340294	42340294	+	5'UTR	SNP	C	A	A	rs75489266	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18922736	18922736	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85285712	85285712	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A6	6533	broad.mit.edu	37	3	14489072	14489072	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70146911	70146911	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33749524	33749524	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328487	88328487	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18826800	18826800	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTNL1	219537	broad.mit.edu	37	11	57313402	57313402	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF1	57154	broad.mit.edu	37	7	98655033	98655033	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF2	64750	broad.mit.edu	37	17	62543649	62543649	+	Intron	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84417477	84417477	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCA	6622	broad.mit.edu	37	4	90743475	90743476	+	Missense_Mutation	DNP	TG	CC	CC			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25460802	25460802	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPG	6637	broad.mit.edu	37	2	70520730	70520730	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130781567	130781567	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108366912	108366912	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64939753	64939753	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4356383	4356383	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2G	6706	broad.mit.edu	37	1	153122650	153122650	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158585228	158585228	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158648053	158648053	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13145412	13145412	+	Silent	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142741358	142741358	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30750800	30750800	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A3	79644	broad.mit.edu	37	4	56230429	56230429	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRI	6717	broad.mit.edu	37	7	87837825	87837825	+	Silent	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85113323	85113323	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74076333	74076333	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68472007	68472007	+	Intron	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC2	8614	broad.mit.edu	37	5	172755225	172755225	+	5'UTR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1207120	1207120	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5333033	5333033	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STL	7955	broad.mit.edu	37	6	125233437	125233437	+	RNA	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108875201	108875201	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75505485	75505485	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113194251	113194251	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109306415	109306415	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152470533	152470533	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33403145	33403145	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT11	23208	broad.mit.edu	37	1	155829722	155829722	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75425737	75425737	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104511146	104511146	+	Missense_Mutation	SNP	C	T	T	rs150288991		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32635604	32635604	+	5'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R20	259295	broad.mit.edu	37	12	11149674	11149674	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCCD1	55171	broad.mit.edu	37	3	186271936	186271936	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139636137	139636137	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145850158	145850158	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149743609	149743609	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20847169	20847169	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56650541	56650541	+	Splice_Site	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30705192	30705192	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121989684	121989693	+	Intron	DEL	TTTTGTTTTG	-	-	rs3835787		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100229466	100229466	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1	7040	broad.mit.edu	37	19	41854260	41854260	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218614594	218614594	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43819156	43819156	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79354471	79354471	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC6	79228	broad.mit.edu	37	16	3074344	3074344	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72050104	72050104	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32638252	32638252	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43777325	43777325	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56824590	56824590	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM50	92609	broad.mit.edu	37	19	39973856	39973856	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE1	7088	broad.mit.edu	37	9	84205676	84205676	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR9	54106	broad.mit.edu	37	3	52257634	52257634	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED9	54732	broad.mit.edu	37	5	177020659	177020659	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129559047	129559047	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5766178	5766178	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM176A	55365	broad.mit.edu	37	7	150501818	150501818	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM194A	23306	broad.mit.edu	37	12	57466491	57466491	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM218	219854	broad.mit.edu	37	11	124983922	124983922	+	5'Flank	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM85	51234	broad.mit.edu	37	15	34519984	34519984	+	Missense_Mutation	SNP	C	G	G	rs11544437		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSL3	7117	broad.mit.edu	37	X	12994777	12994777	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP2	7127	broad.mit.edu	37	14	103596402	103596402	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP2	7127	broad.mit.edu	37	14	103596404	103596404	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI2	7136	broad.mit.edu	37	11	1861809	1861809	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175334108	175334108	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47440553	47440553	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	53037910	53037910	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1	7150	broad.mit.edu	37	20	39746848	39746848	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579457	7579457	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPI1	7167	broad.mit.edu	37	12	6978185	6978185	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998232	10998232	+	RNA	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998277	10998277	+	RNA	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2B	6434	broad.mit.edu	37	3	185637312	185637312	+	Intron	SNP	C	A	A	rs59944908	by1000genomes	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAIP	10293	broad.mit.edu	37	3	49866942	49866942	+	Splice_Site	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202264117	202264117	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30124730	30124730	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM11	81559	broad.mit.edu	37	1	228589780	228589780	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM35	23087	broad.mit.edu	37	8	27147573	27147573	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57138479	57138479	+	Intron	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM43	129868	broad.mit.edu	37	2	96259801	96259801	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55037996	55037996	+	3'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89531684	89531684	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49671385	49671385	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234894455	234894455	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135266077	135266077	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179412935	179412935	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19748131	19748131	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6495433	6495433	+	Silent	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	93572	93573	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12693928	12693928	+	5'UTR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBL3	5412	broad.mit.edu	37	13	30423695	30423695	+	5'UTR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBOX5	22888	broad.mit.edu	37	20	3102805	3102805	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK3A	7380	broad.mit.edu	37	22	45689282	45689283	+	Intron	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229771836	229771836	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43927062	43927062	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55591166	55591166	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP35	57558	broad.mit.edu	37	11	77921493	77921493	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP37	57695	broad.mit.edu	37	2	219411562	219411562	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129040189	129040189	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120632047	120632047	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120632070	120632070	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30669372	30669372	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39076118	39076118	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43209888	43209888	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5165558	5165558	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52444915	52444915	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106181960	106181960	+	IGR	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49329450	49329450	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49897767	49897767	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55647205	55647205	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55782985	55782985	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143178	56143178	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6016341	6016341	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10658540	10658540	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38472481	38472481	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53547454	53547454	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80423066	80423066	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8787735	8787735	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98073513	98073513	+	IGR	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	26692147	26692147	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49785827	49785827	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411939	19411939	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35937565	35937566	+	IGR	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	68266243	68266243	+	IGR	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79021344	79021344	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32617070	32617070	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020677	33020677	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605431	33605431	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18554156	18554156	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3169784	3169784	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69617589	69617589	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613635	14613635	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57597402	57597402	+	IGR	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15027362	15027362	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19937996	19937996	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20656046	20656046	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22321492	22321492	+	IGR	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37515949	37515949	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39734266	39734266	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53202211	53202211	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55119375	55119375	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12898107	12898107	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13172476	13172476	+	IGR	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13173146	13173146	+	IGR	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	162415557	162415557	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170339101	170339101	+	IGR	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187533033	187533033	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236275057	236275057	+	IGR	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79521252	79521252	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80749124	80749124	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23529512	23529512	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757005	14757005	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123243	16123243	+	IGR	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17395861	17395861	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103027784	103027784	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131258179	131258179	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204499850	204499850	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225036094	225036094	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800393	91800393	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	13501802	13501802	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147308794	147308794	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15915461	15915461	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	170670621	170670621	+	IGR	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90279200	90279200	+	IGR	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185832432	185832432	+	IGR	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69991556	69991556	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	141276153	141276153	+	IGR	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451330	15451330	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910121	25910121	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55134719	55134719	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18368063	18368063	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48181770	48181770	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53100702	53100702	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096405	97096405	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492676	10492676	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511440	12511440	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21260515	21260515	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695095	38695095	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256013	53256013	+	IGR	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256248	53256248	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55781006	55781006	+	IGR	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56358966	56358966	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665101	56665101	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63029370	63029370	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63924506	63924506	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64030567	64030567	+	IGR	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85010607	85010607	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	93544301	93544301	+	IGR	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134338250	134338250	+	IGR	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23340725	23340725	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43227704	43227704	+	IGR	SNP	T	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48012800	48012800	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34917483	34917483	+	IGR	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44118439	44118439	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45362575	45362575	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134808534	134808534	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23094900	23094900	+	IGR	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48136200	48136200	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718449	65718449	+	IGR	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294305	89294305	+	IGR	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294310	89294310	+	IGR	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177649043	177649043	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEPH1	79674	broad.mit.edu	37	3	156979109	156979109	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37036074	37036074	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100479783	100479783	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100479871	100479871	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12401967	12401967	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122729395	122729395	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6120900	6120901	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036294	71036294	+	Silent	SNP	G	T	T	rs144028983	byFrequency	TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85731418	85731418	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177067375	177067375	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR86	349136	broad.mit.edu	37	7	151079074	151079074	+	Intron	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141408876	141408876	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40939540	40939540	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32450106	32450106	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168098537	168098537	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC6	79670	broad.mit.edu	37	9	88967669	88967669	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC6	79670	broad.mit.edu	37	9	88967678	88967678	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207169854	207169854	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74649886	74649886	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145157401	145157401	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145187455	145187455	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP14	57677	broad.mit.edu	37	19	36831713	36831713	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106811100	106811100	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68256100	68256100	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147131311	147131311	+	Silent	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136650015	136650015	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44798859	44798859	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22157095	22157095	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF20	7568	broad.mit.edu	37	19	12246306	12246306	+	Intron	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF214	7761	broad.mit.edu	37	11	7022175	7022175	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF256	10172	broad.mit.edu	37	19	58455223	58455223	+	Intron	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005662	37005662	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280A	129025	broad.mit.edu	37	22	22869861	22869861	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44582429	44582429	+	Silent	SNP	C	A	A	rs145737287		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44590736	44590736	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53612605	53612605	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF436	80818	broad.mit.edu	37	1	23689281	23689281	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF439	90594	broad.mit.edu	37	19	11978327	11978327	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188235	57188235	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF483	158399	broad.mit.edu	37	9	114289741	114289741	+	Silent	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512B	57473	broad.mit.edu	37	20	62592741	62592741	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74154561	74154561	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	52978557	52978557	+	Intron	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF599	148103	broad.mit.edu	37	19	35258315	35258315	+	Silent	SNP	C	T	T	rs147712651		TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116770607	116770607	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF639	51193	broad.mit.edu	37	3	179051750	179051750	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF649	65251	broad.mit.edu	37	19	52394602	52394602	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF649	65251	broad.mit.edu	37	19	52399800	52399800	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40774879	40774879	+	Silent	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF74	7625	broad.mit.edu	37	22	20749693	20749693	+	Silent	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88847491	88847491	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58551840	58551840	+	Silent	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119291412	119291412	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	64660181	64660181	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22111421	22111421	+	Intron	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22564597	22564597	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102312405	102312405	+	5'Flank	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	72762494	72762494	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20331712	20331712	+	Intron	SNP	C	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37188142	37188142	+	RNA	SNP	G	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78280178	78280178	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89417044	89417045	+	RNA	DNP	GC	TT	TT			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90121800	90121800	+	Intron	SNP	A	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69332294	69332294	+	Intron	SNP	T	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69332533	69332533	+	Intron	SNP	C	A	A			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39894321	39894321	+	RNA	SNP	C	G	G			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
