Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-21-1075-01A-01D-0687-06	TCGA-21-1075-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1011-01A-01D-0687-06	TCGA-22-1011-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1012-01A-01D-0687-06	TCGA-22-1012-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1078-01A-01D-0687-06	TCGA-21-1078-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1071-01A-01D-0687-06	TCGA-21-1071-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1017-01A-01D-0687-06	TCGA-22-1017-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1082-01A-01D-0687-06	TCGA-21-1082-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1002-01A-01D-0687-06	TCGA-22-1002-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1083-01A-01D-0687-06	TCGA-21-1083-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1080-01A-01D-0687-06	TCGA-21-1080-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1076-01A-02D-0687-06	TCGA-21-1076-01A-02D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1081-01A-01D-0687-06	TCGA-21-1081-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-0940-01A-01D-0687-06	TCGA-22-0940-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1005-01A-01D-0687-06	TCGA-22-1005-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1079-01A-01D-0687-06	TCGA-21-1079-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1016-01A-01D-0687-06	TCGA-22-1016-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1072-01A-01D-0687-06	TCGA-21-1072-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-1000-01A-01D-0687-06	TCGA-22-1000-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-22-0944-01A-01D-0687-06	TCGA-22-0944-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1070-01A-01D-0687-06	TCGA-21-1070-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-56-1622-01A-01D-0687-06	TCGA-56-1622-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
TCGA-21-1077-01A-01D-0687-06	TCGA-21-1077-01A-01D-0687-06	hudsonalpha.org_LUSC.Human1MDuo.1.0.0.loh.txt	hudsonalpha.org_LUSC.Human1MDuo.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg_2013071500	LUSC.snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUSC.Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg.Level_3.2013071500.0.0	yes
