Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
NPHP4	261734	broad.mit.edu	37	1	5965732	5965732	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:5965732G>A	uc001alq.1	-	14	1989	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA|NPHP4_uc009vlu.1_5'Flank	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	575					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		GCATGCAAAGGCGTGAACGGC	0.592													5	22					0	0	0.001168	0	0	
KIF1B	23095	broad.mit.edu	37	1	10321979	10321979	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:10321979T>G	uc001aqx.3	+	5	582	c.380T>G	c.(379-381)TTT>TGT	p.F127C	KIF1B_uc001aqv.3_Missense_Mutation_p.F127C|KIF1B_uc001aqw.3_Missense_Mutation_p.F127C|KIF1B_uc001aqy.2_Missense_Mutation_p.F127C|KIF1B_uc001aqz.2_Missense_Mutation_p.F127C|KIF1B_uc001ara.2_Missense_Mutation_p.F127C|KIF1B_uc001arb.2_Missense_Mutation_p.F127C|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	127	Kinesin-motor.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GAAGAACTTTTTGAGAAAATC	0.418													22	30					0	0	0.014323	0	0	
PRAMEF1	65121	broad.mit.edu	37	1	12855915	12855915	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:12855915C>T	uc001auj.1	+	4	1298	c.1195C>T	c.(1195-1197)CGC>TGC	p.R399C		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	399											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGACCTGCTGCGCCACACCAG	0.557													14	141					0	0	0.002450	0	0	
CELA2A	63036	broad.mit.edu	37	1	15793956	15793956	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:15793956T>G	uc001awk.2	+	7	741	c.715T>G	c.(715-717)TCT>GCT	p.S239A		NM_033440	NP_254275	P08217	CEL2A_HUMAN	elastase 2A preproprotein	239	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAGCTTCGGGTCTCGCCTCGG	0.602													13	21					0	0	0.013537	0	0	
PAX7	5081	broad.mit.edu	37	1	19062421	19062421	+	Missense_Mutation	SNP	C	A	A	rs142059630		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:19062421C>A	uc001bay.2	+	8	2049	c.1451C>A	c.(1450-1452)ACC>AAC	p.T484N	PAX7_uc001baz.2_Missense_Mutation_p.T482N|PAX7_uc010oct.1_Intron	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	484					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		CCTTCTCCCACCCCCAGGGCC	0.433			T	FOXO1A	alveolar rhabdomyosarcoma								6	31					0.00198382	0.00203119	0.001984	1	0	
PQLC2	54896	broad.mit.edu	37	1	19653095	19653095	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:19653095G>T	uc001bby.2	+	7	948	c.596G>T	c.(595-597)CGG>CTG	p.R199L	PQLC2_uc001bbz.2_Missense_Mutation_p.R134L|PQLC2_uc001bca.2_Missense_Mutation_p.R199L|PQLC2_uc001bcb.2_Missense_Mutation_p.R88L|PQLC2_uc001bcc.2_Missense_Mutation_p.R88L	NM_017765	NP_060235	Q6ZP29	PQLC2_HUMAN	PQ loop repeat containing 2 isoform 1	199	PQ-loop 2.|Helical; (Potential).					integral to membrane					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;1.89e-05)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTGCTTTCCCGGCTGCCTCAG	0.652													14	64					5.3912e-06	5.68979e-06	0.006122	1	0	
PLA2G2E	30814	broad.mit.edu	37	1	20249202	20249202	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:20249202C>G	uc001bct.1	-	2	145	c.87G>C	c.(85-87)GAG>GAC	p.E29D		NM_014589	NP_055404	Q9NZK7	PA2GE_HUMAN	phospholipase A2, group IIE precursor	29					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|GBM - Glioblastoma multiforme(114;0.000146)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTCATCTTCTCGATCATCA	0.522													35	82					0	0	0.006999	0	0	
EPHA8	2046	broad.mit.edu	37	1	22927279	22927279	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:22927279C>T	uc001bfx.1	+	14	2639	c.2514C>T	c.(2512-2514)CCC>CCT	p.P838P		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	838	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGGAGCGGCCCTACTGGAACA	0.692													26	78					0	0	0.008361	0	0	
ASAP3	55616	broad.mit.edu	37	1	23763691	23763691	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:23763691G>C	uc001bha.2	-	14	1398	c.1274C>G	c.(1273-1275)ACA>AGA	p.T425R	ASAP3_uc001bgy.1_5'Flank|ASAP3_uc001bgz.1_5'Flank|ASAP3_uc010odz.1_Missense_Mutation_p.T294R|ASAP3_uc010oea.1_Missense_Mutation_p.T416R|ASAP3_uc001bhb.2_5'UTR	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	425					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAGCAGCTTTGTGAGGTCGTG	0.716													5	13					0	0	0.000602	0	0	
GRHL3	57822	broad.mit.edu	37	1	24663062	24663062	+	Silent	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:24663062A>G	uc001biy.2	+	4	418	c.372A>G	c.(370-372)GGA>GGG	p.G124G	GRHL3_uc001bix.2_Silent_p.G119G|GRHL3_uc001biz.2_Silent_p.G26G	NM_021180	NP_067003	Q8TE85	GRHL3_HUMAN	sister-of-mammalian grainyhead protein isoform	119					regulation of actin cytoskeleton organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.00171)|all_lung(284;0.00226)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;8.72e-25)|Colorectal(126;4.38e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|GBM - Glioblastoma multiforme(114;0.000132)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00377)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.143)		ACGTGTCTGGAACCCCAGAGT	0.562													22	133					0	0	0.002780	0	0	
RPS6KA1	6195	broad.mit.edu	37	1	26888123	26888123	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:26888123G>A	uc001bmr.1	+	17	1722	c.1559G>A	c.(1558-1560)GGC>GAC	p.G520D	RPS6KA1_uc010ofe.1_Missense_Mutation_p.G428D|RPS6KA1_uc010off.1_Missense_Mutation_p.G504D|RPS6KA1_uc001bms.1_Missense_Mutation_p.G529D|RPS6KA1_uc009vsl.1_Missense_Mutation_p.G363D	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	520	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CACACCATTGGCAAAACTGTG	0.567													28	82					0	0	0.006320	0	0	
CSMD2	114784	broad.mit.edu	37	1	34554768	34554768	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:34554768C>T	uc001bxn.1	-	2	123	c.94G>A	c.(94-96)GGT>AGT	p.G32S	CSMD2_uc001bxm.1_Missense_Mutation_p.G72S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	32	CUB 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCATTGGGACCGTGCAGTTGG	0.527													10	25					0	0	0.006214	0	0	
COL8A2	1296	broad.mit.edu	37	1	36564121	36564121	+	Silent	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:36564121T>A	uc001bzv.1	-	2	1168	c.1161A>T	c.(1159-1161)CCA>CCT	p.P387P	COL8A2_uc001bzw.1_Silent_p.P322P	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	387	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CAGGCACTCCTGGGGGTCCTC	0.692													4	9					0	0	0.009096	0	0	
CSF3R	1441	broad.mit.edu	37	1	36932035	36932035	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:36932035C>A	uc001caw.1	-	17	2612	c.2434G>T	c.(2434-2436)GTC>TTC	p.V812F	MRPS15_uc001cas.2_5'Flank|CSF3R_uc001cat.1_Missense_Mutation_p.V374F|CSF3R_uc009vvc.1_Missense_Mutation_p.V341F|CSF3R_uc001cau.1_Missense_Mutation_p.V212F|CSF3R_uc001cav.1_Intron|CSF3R_uc001cax.1_Missense_Mutation_p.V839F|CSF3R_uc001cay.1_3'UTR	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	812	Cytoplasmic (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	GGCCCAAAGACACAGTCGTCC	0.647													10	30					2.74318e-10	3.06486e-10	0.006214	1	0	
CSF3R	1441	broad.mit.edu	37	1	36938253	36938254	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:36938253_36938254GT>AC	uc001caw.1	-	7	885_886	c.707_708AC>GT	c.(706-708)GAC>GGT	p.D236G	CSF3R_uc001cat.1_5'Flank|CSF3R_uc009vvc.1_5'Flank|CSF3R_uc001cau.1_5'Flank|CSF3R_uc001cav.1_Missense_Mutation_p.D236G|CSF3R_uc001cax.1_Missense_Mutation_p.D236G|CSF3R_uc001cay.1_Missense_Mutation_p.D236G	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	236	Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CAGGGCTGGGGTCCATGGTCCG	0.639													5	14					0	0	0.004672	0	0	
EPHA10	284656	broad.mit.edu	37	1	38227298	38227298	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:38227298T>G	uc009vvi.2	-	3	715	c.629A>C	c.(628-630)CAG>CCG	p.Q210P	EPHA10_uc001cbw.3_Missense_Mutation_p.Q210P	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	210	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCGCGGCACTGCTTGTAGTA	0.697													11	32					0	0	0.010729	0	0	
EPHA10	284656	broad.mit.edu	37	1	38227300	38227300	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:38227300C>G	uc009vvi.2	-	3	713	c.627G>C	c.(625-627)AAG>AAC	p.K209N	EPHA10_uc001cbw.3_Missense_Mutation_p.K209N	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	209	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGCGGCACTGCTTGTAGTAGA	0.697													12	32					0	0	0.013537	0	0	
TMEM53	79639	broad.mit.edu	37	1	45120509	45120509	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:45120509C>G	uc001cmc.2	-	3	592	c.556G>C	c.(556-558)GTC>CTC	p.V186L	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Missense_Mutation_p.V113L|TMEM53_uc009vxh.1_Missense_Mutation_p.V69L|TMEM53_uc010ola.1_Missense_Mutation_p.V69L	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	186	Helical; (Potential).					integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					GCAAGCAGGACGTGGAACAGG	0.667													6	34					0	0	0.001168	0	0	
DMBX1	127343	broad.mit.edu	37	1	46976756	46976756	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:46976756G>T	uc001cpx.2	+	3	513	c.498G>T	c.(496-498)CAG>CAT	p.Q166H	DMBX1_uc001cpw.2_Missense_Mutation_p.Q161H	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	166					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACACTGAGCAGCCCCCACGTC	0.647													8	91					2.17888e-05	2.282e-05	0.006214	1	0	
C1orf168	199920	broad.mit.edu	37	1	57258129	57258129	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:57258129T>C	uc001cym.3	-	2	763	c.357A>G	c.(355-357)CAA>CAG	p.Q119Q	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.Q119Q	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	119										ovary(3)|skin(2)	5						CAACATTTGATTGAGTCACCT	0.408													17	138					0	0	0.004990	0	0	
C8B	732	broad.mit.edu	37	1	57411524	57411524	+	Missense_Mutation	SNP	C	T	T	rs148695486	by1000genomes	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:57411524C>T	uc001cyp.2	-	7	1142	c.1075G>A	c.(1075-1077)GTT>ATT	p.V359I	C8B_uc010oon.1_Missense_Mutation_p.V297I|C8B_uc010ooo.1_Missense_Mutation_p.V307I	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	359	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TTGTTCATAACGAGGGTGTAT	0.468													30	40					0	0	0.007291	0	0	
ROR1	4919	broad.mit.edu	37	1	64515551	64515551	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:64515551A>G	uc001dbj.2	+	3	751	c.352A>G	c.(352-354)ATT>GTT	p.I118V	ROR1_uc001dbi.3_Missense_Mutation_p.I118V	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	118	Ig-like C2-type.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						TCGGCTGCGGATTAGAAACCT	0.552													28	144					0	0	0.008361	0	0	
LEPR	3953	broad.mit.edu	37	1	66102502	66102502	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:66102502C>T	uc001dci.2	+	20	3504	c.3302C>T	c.(3301-3303)TCG>TTG	p.S1101L	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1101	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TCAAGGGTATCGTGCCCATTC	0.403													12	59					0	0	0.010729	0	0	
CTH	1491	broad.mit.edu	37	1	70904487	70904487	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:70904487T>C	uc001dfd.2	+	11	1313	c.1169T>C	c.(1168-1170)CTA>CCA	p.L390P	CTH_uc001dfe.2_Missense_Mutation_p.L346P|CTH_uc010oqq.1_Missense_Mutation_p.L358P	NM_001902	NP_001893	P32929	CGL_HUMAN	cystathionase isoform 1	390					cysteine biosynthetic process|hydrogen sulfide biosynthetic process|protein homotetramerization|protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine	cytoplasm|nucleus	cystathionine gamma-lyase activity|L-cysteine desulfhydrase activity|pyridoxal phosphate binding			lung(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	CTGGAAGATCTAGATCAAGCT	0.363													27	40					0	0	0.006320	0	0	
SYDE2	84144	broad.mit.edu	37	1	85648626	85648626	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:85648626G>A	uc009wcm.2	-	3	1748	c.1699C>T	c.(1699-1701)CGA>TGA	p.R567*	SYDE2_uc001dku.3_Nonsense_Mutation_p.R567*	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	567					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		TGAACTTCTCGGCAGTTATAT	0.398													107	133					0	0	0.014410	0	0	
COL24A1	255631	broad.mit.edu	37	1	86591326	86591326	+	Silent	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:86591326A>C	uc001dlj.2	-	3	735	c.693T>G	c.(691-693)TCT>TCG	p.S231S	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.S231S	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	231					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		AGTAGTCTGCAGATGCTTCTG	0.358													23	42					0	0	0.014323	0	0	
FNDC7	163479	broad.mit.edu	37	1	109270518	109270518	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:109270518G>C	uc001dvx.2	+	7	1200	c.1200G>C	c.(1198-1200)CTG>CTC	p.L400L	FNDC7_uc010ova.1_Silent_p.L167L	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	401	Fibronectin type-III 5.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		GTGCCGAACTGTATGAAACCA	0.507													17	96					0	0	0.004007	0	0	
SLC6A17	388662	broad.mit.edu	37	1	110714700	110714700	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:110714700A>T	uc009wfq.2	+	3	766	c.305A>T	c.(304-306)TAC>TTC	p.Y102F		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	102	Helical; Name=2; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CTGGTGCCCTACCTGGTGCTG	0.617													6	20					0	0	0.001984	0	0	
CTTNBP2NL	55917	broad.mit.edu	37	1	112998804	112998804	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:112998804G>T	uc001ebx.2	+	6	918	c.690G>T	c.(688-690)CAG>CAT	p.Q230H	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	230	Potential.					actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAGGCTTGCAGACTGAGGCCC	0.502													12	65					5.16669e-11	5.8104e-11	0.010729	1	0	
NOTCH2	4853	broad.mit.edu	37	1	120497838	120497838	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:120497838C>G	uc001eik.2	-	13	2300	c.2044G>C	c.(2044-2046)GAC>CAC	p.D682H	NOTCH2_uc001eil.2_Missense_Mutation_p.D682H|NOTCH2_uc001eim.3_Missense_Mutation_p.D599H	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	682	EGF-like 18; calcium-binding (Potential).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCATCAATGTCAATGTTACAT	0.483			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				6	48					0	0	0.001168	0	0	
ITGA10	8515	broad.mit.edu	37	1	145530340	145530340	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:145530340G>C	uc001eoa.2	+	6	631	c.555G>C	c.(553-555)CAG>CAC	p.Q185H	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.Q54H|ITGA10_uc009wiw.2_Missense_Mutation_p.Q42H|ITGA10_uc010oyw.1_Missense_Mutation_p.Q130H	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	185	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTGAAGTTCAGACCTTCCTAC	0.488													60	143					0	0	0.014410	0	0	
GJA5	2702	broad.mit.edu	37	1	147231318	147231318	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:147231318A>C	uc001eps.1	-	2	170	c.29T>G	c.(28-30)TTC>TGC	p.F10C	GJA5_uc001ept.1_Missense_Mutation_p.F10C	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	10	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			TTCCTCCAGGAAATTTCCCAG	0.517													21	62					0	0	0.012319	0	0	
SMCP	4184	broad.mit.edu	37	1	152856909	152856909	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:152856909A>T	uc001fat.2	+	2	156	c.11A>T	c.(10-12)CAG>CTG	p.Q4L		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	4					penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ATGTGTGACCAGACAAAACAC	0.448													4	57					0	0	0.000602	0	0	
DCST2	127579	broad.mit.edu	37	1	155005612	155005612	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:155005612G>C	uc001fgm.2	-	2	477	c.397C>G	c.(397-399)CAG>GAG	p.Q133E	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	133	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TCGGCGGTCTGGTTCAGGGCC	0.627													4	16					0	0	0.009096	0	0	
RHBG	57127	broad.mit.edu	37	1	156339103	156339103	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:156339103C>T	uc010pho.1	+	1	101	c.63C>T	c.(61-63)TTC>TTT	p.F21F	RHBG_uc010phm.1_Silent_p.F21F|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_5'UTR|RHBG_uc009wrz.2_5'UTR|RHBG_uc001for.2_5'UTR	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	21	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TGTGCCTCTTCCTCCAGGGCG	0.662													16	58					0	0	0.004990	0	0	
OR10Z1	128368	broad.mit.edu	37	1	158577100	158577100	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:158577100G>T	uc010pio.1	+	1	872	c.872G>T	c.(871-873)AGT>ATT	p.S291I		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					ATTGTTTATAGTCTAAGGAAT	0.463													36	276					1.04594e-18	1.20997e-18	0.006230	1	0	
ATP1A2	477	broad.mit.edu	37	1	160104959	160104959	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:160104959C>T	uc001fvc.2	+	15	2121	c.1989C>T	c.(1987-1989)CAC>CAT	p.H663H	ATP1A2_uc001fvb.2_Silent_p.H663H|ATP1A2_uc001fvd.2_Silent_p.H399H	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	663	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GCGTGGTGCACGGCTCTGACC	0.597													12	51					0	0	0.001855	0	0	
OLFML2B	25903	broad.mit.edu	37	1	161953891	161953891	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:161953891G>C	uc001gbu.2	-	8	2251	c.1827C>G	c.(1825-1827)GCC>GCG	p.A609A	OLFML2B_uc001gbt.2_Silent_p.A92A|OLFML2B_uc010pkq.1_Silent_p.A610A	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	609	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GCCAGGGGGTGGCCTCCTCGT	0.617													8	51					0	0	0.004482	0	0	
C1orf49	84066	broad.mit.edu	37	1	178489991	178489991	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:178489991T>A	uc001glt.1	+	7	637	c.525T>A	c.(523-525)CAT>CAA	p.H175Q	C1orf49_uc001glu.1_Missense_Mutation_p.H175Q|C1orf49_uc001glv.1_RNA|C1orf49_uc001glw.1_Missense_Mutation_p.H183Q	NM_032126	NP_115502	Q5T0J7	CA049_HUMAN	hypothetical protein LOC84066	175						microtubule cytoskeleton					0						ATCCCCTTCATCACTGTGGGA	0.577													22	51					0	0	0.014323	0	0	
ZNF648	127665	broad.mit.edu	37	1	182026102	182026102	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:182026102C>T	uc001goz.2	-	2	1252	c.1044G>A	c.(1042-1044)TCG>TCA	p.S348S		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	348	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCGCAGGTCCGAAGAGCGCA	0.632													5	22					0	0	0.000602	0	0	
HMCN1	83872	broad.mit.edu	37	1	185894223	185894223	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:185894223C>G	uc001grq.1	+	9	1559	c.1330C>G	c.(1330-1332)CTG>GTG	p.L444V		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	444	Ig-like C2-type 1.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGGATACTATCTGCAGCCGGG	0.393													4	40					0	0	0.009096	0	0	
HMCN1	83872	broad.mit.edu	37	1	186056779	186056779	+	Splice_Site	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:186056779T>A	uc001grq.1	+	60	9592	c.9363_splice	c.e60+2	p.E3121_splice		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor						response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAAGCTGAGGTGCATCTTTTA	0.403													9	131					0	0	0.006214	0	0	
KIF14	9928	broad.mit.edu	37	1	200559309	200559309	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:200559309G>T	uc010ppk.1	-	17	3344	c.2905C>A	c.(2905-2907)CTT>ATT	p.L969I	KIF14_uc010ppj.1_Missense_Mutation_p.L478I	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	969	Potential.|Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TGAGAAGAAAGCTCTTGCTGA	0.368													94	125					5.48297e-45	6.48503e-45	0.014410	1	0	
LOC148709	148709	broad.mit.edu	37	1	202843373	202843373	+	RNA	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:202843373G>C	uc001gyk.1	+	3		c.1325G>C				NR_002929				Homo sapiens cDNA FLJ31247 fis, clone KIDNE2005296, weakly similar to ACTIN, CYTOPLASMIC 1.												0						GCACCATCCTGGCCGCCTTCC	0.537													8	5					0	0	0.004482	0	0	
MYBPH	4608	broad.mit.edu	37	1	203144770	203144770	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:203144770G>A	uc001gzh.1	-	1	173	c.114C>T	c.(112-114)TCC>TCT	p.S38S	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	38					cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		CTTCTCTGGTGGACTCTGATA	0.632													21	216					0	0	0.014323	0	0	
NFASC	23114	broad.mit.edu	37	1	204943805	204943805	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:204943805G>A	uc001hbj.2	+	14	1740	c.1412G>A	c.(1411-1413)AGC>AAC	p.S471N	NFASC_uc001hbh.2_Missense_Mutation_p.S471N|NFASC_uc010pqz.1_Missense_Mutation_p.S465N|NFASC_uc010pra.1_Missense_Mutation_p.S482N|NFASC_uc001hbi.2_Missense_Mutation_p.S482N|NFASC_uc009xbg.1_3'UTR|NFASC_uc010prb.1_Missense_Mutation_p.S482N|NFASC_uc010prc.1_Missense_Mutation_p.S38N|NFASC_uc001hbk.1_Missense_Mutation_p.S292N	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	471	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGGCAAGGAAGCAACCTGGAT	0.517													28	194					0	0	0.005443	0	0	
TMCC2	9911	broad.mit.edu	37	1	205210856	205210856	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:205210856G>A	uc001hbz.1	+	3	875	c.431G>A	c.(430-432)CGG>CAG	p.R144Q	TMCC2_uc010prf.1_Missense_Mutation_p.R66Q	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	144						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CTGCCCGCCCGGCCCACCGCC	0.582													7	36					0	0	0.001984	0	0	
IKBKE	9641	broad.mit.edu	37	1	206647762	206647762	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:206647762T>C	uc001hdz.1	+	4	544	c.176T>C	c.(175-177)CTG>CCG	p.L59P	IKBKE_uc009xbu.1_Missense_Mutation_p.L59P|IKBKE_uc009xbv.1_Missense_Mutation_p.L59P|IKBKE_uc001hea.1_5'UTR	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	59	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					TTTGAGGTCCTGCGGAAGCTG	0.562													5	46					0	0	0.001984	0	0	
CR1L	1379	broad.mit.edu	37	1	207850787	207850787	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:207850787G>A	uc001hga.3	+	2	272	c.151G>A	c.(151-153)GAT>AAT	p.D51N	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	51	Sushi 1.					cytoplasm|extracellular region|membrane					0						CAACCTAACTGATGACTTTGA	0.458													47	136					0	0	0.013114	0	0	
LAMB3	3914	broad.mit.edu	37	1	209799127	209799127	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:209799127C>G	uc001hhg.2	-	13	2232	c.1842G>C	c.(1840-1842)GGG>GGC	p.G614G	LAMB3_uc009xco.2_Silent_p.G614G|LAMB3_uc001hhh.2_Silent_p.G614G|LAMB3_uc010psl.1_Intron|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	614	Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		GGTCCTCCAGCCCAGGCCCTG	0.632													47	43					0	0	0.013114	0	0	
USH2A	7399	broad.mit.edu	37	1	215844540	215844540	+	Missense_Mutation	SNP	G	T	T	rs150600947		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:215844540G>T	uc001hku.1	-	64	14294	c.13907C>A	c.(13906-13908)CCC>CAC	p.P4636H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4636	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATGTGGAGGGGGTTGCATCAA	0.483										HNSCC(13;0.011)			12	108					3.07112e-06	3.25121e-06	0.010729	1	0	
SLC30A10	55532	broad.mit.edu	37	1	220091794	220091794	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:220091794A>T	uc001hlw.2	-	3	972	c.761T>A	c.(760-762)GTT>GAT	p.V254D	SLC30A10_uc001hlu.1_RNA|SLC30A10_uc001hlv.2_Missense_Mutation_p.V9D|SLC30A10_uc001hlx.2_Missense_Mutation_p.V29D	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	254	Helical; (Potential).|Poly-Val.				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GATGACCACAACCACGGACCC	0.527													72	104					0	0	0.014410	0	0	
DEGS1	8560	broad.mit.edu	37	1	224377672	224377672	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:224377672A>G	uc001hoj.2	+	2	587	c.476A>G	c.(475-477)AAG>AGG	p.K159R	DEGS1_uc001hoi.2_Missense_Mutation_p.K138R	NM_144780	NP_659004	O15121	DEGS1_HUMAN	degenerative spermatocyte homolog 1, lipid	159	Helical; (Potential).				sphingolipid metabolic process|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	electron carrier activity|protein binding|sphingolipid delta-4 desaturase activity				0	Breast(184;0.193)			GBM - Glioblastoma multiforme(131;0.00643)		GCTTTCAGAAAGTTTATATGG	0.438													6	286					0	0	0.001984	0	0	
CNIH3	149111	broad.mit.edu	37	1	224922345	224922345	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:224922345G>T	uc001hos.1	+	5	1090	c.392G>T	c.(391-393)TGT>TTT	p.C131F		NM_152495	NP_689708	Q8TBE1	CNIH3_HUMAN	cornichon homolog 3	131	Cytoplasmic (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|postsynaptic membrane					0	Breast(184;0.218)			GBM - Glioblastoma multiforme(131;0.073)		TTGAGTTACTGTCAGAAGGAG	0.522													45	121					2.35958e-20	2.74817e-20	0.009718	1	0	
C1orf55	163859	broad.mit.edu	37	1	226175773	226175773	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:226175773G>C	uc001hpu.3	-	6	1011	c.958C>G	c.(958-960)CAG>GAG	p.Q320E	C1orf55_uc001hpv.2_Missense_Mutation_p.Q320E	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	320										lung(1)	1	Breast(184;0.197)					TTCTTCTCCTGGGTCTCTTCT	0.488													78	115					0	0	0.014410	0	0	
GALNT2	2590	broad.mit.edu	37	1	230379172	230379172	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:230379172A>C	uc010pwa.1	+	7	800	c.728A>C	c.(727-729)GAG>GCG	p.E243A	GALNT2_uc010pvy.1_Missense_Mutation_p.E205A|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	243	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				AGGGTGGCGGAGGTGAGATGA	0.642													9	48					0	0	0.004482	0	0	
ADSS	159	broad.mit.edu	37	1	244582180	244582180	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:244582180A>T	uc001iaj.2	-	9	1121	c.827T>A	c.(826-828)GTT>GAT	p.V276D		NM_001126	NP_001117	P30520	PURA2_HUMAN	adenylosuccinate synthase	276					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol|plasma membrane	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(2)|kidney(1)	3	all_cancers(71;2.17e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)	all_cancers(173;0.0896)|all_epithelial(177;0.172)	all cancers(7;9.71e-08)|GBM - Glioblastoma multiforme(7;1.28e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.0014)		L-Aspartic Acid(DB00128)	AACACCTCCAACAGTACAATT	0.353													13	39					0	0	0.013537	0	0	
PPPDE1	51029	broad.mit.edu	37	1	244849945	244849945	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:244849945A>C	uc001iao.2	+	2	353	c.89A>C	c.(88-90)CAT>CCT	p.H30P	PPPDE1_uc001iap.2_Missense_Mutation_p.H30P	NM_016076	NP_057160	Q9BSY9	PPDE1_HUMAN	PPPDE peptidase domain containing 1	30	PPPDE peptidase.									breast(3)	3						GGAGTTTTTCATTCAGGAATT	0.328													32	71					0	0	0.003755	0	0	
OR14A16	284532	broad.mit.edu	37	1	247978674	247978674	+	Missense_Mutation	SNP	G	A	A	rs147527565		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:247978674G>A	uc001idm.1	-	1	358	c.358C>T	c.(358-360)CGC>TGC	p.R120C		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCAGTATAGCGGTCAAAGGAC	0.493													48	80					0	0	0.013114	0	0	
ITIH5	80760	broad.mit.edu	37	10	7618424	7618424	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:7618424G>A	uc001ijq.2	-	10	2049	c.1970C>T	c.(1969-1971)ACG>ATG	p.T657M	ITIH5_uc001ijp.2_Missense_Mutation_p.T443M|ITIH5_uc001ijr.1_Missense_Mutation_p.T657M	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	657					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ACCTGGCTGCGTGCCAGCTCC	0.682													6	13					0	0	0.001168	0	0	
DHTKD1	55526	broad.mit.edu	37	10	12136219	12136219	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:12136219A>T	uc001ild.3	+	7	1406	c.1307A>T	c.(1306-1308)AAT>ATT	p.N436I		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	436					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			TGGGGCCACAATGAGCTGGAT	0.453													8	84					0	0	0.008291	0	0	
BEND7	222389	broad.mit.edu	37	10	13523094	13523094	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:13523094C>T	uc001imm.2	-	6	1009	c.712G>A	c.(712-714)GTG>ATG	p.V238M	BEND7_uc001imn.2_Translation_Start_Site|BEND7_uc001imo.3_Missense_Mutation_p.V251M	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	290	BEN.						protein binding			ovary(1)|breast(1)	2						GGCATAAACACGTCAAAGCCT	0.398													7	57					0	0	0.003080	0	0	
PTF1A	256297	broad.mit.edu	37	10	23481531	23481531	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:23481531C>T	uc001irp.2	+	1	72	c.72C>T	c.(70-72)GAC>GAT	p.D24D		NM_178161	NP_835455	Q7RTS3	PTF1A_HUMAN	pancreas specific transcription factor, 1a	24					endocrine pancreas development|exocrine pancreas development|regulation of transcription, DNA-dependent|tissue development|transcription, DNA-dependent	cytoplasm|transcription factor complex				pancreas(1)|skin(1)	2						TCGACGAGGACGACTTCTTCA	0.657													18	50					0	0	0.006122	0	0	
NRP1	8829	broad.mit.edu	37	10	33481257	33481257	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:33481257T>C	uc001iwx.3	-	13	2537	c.2014A>G	c.(2014-2016)AAG>GAG	p.K672E	NRP1_uc001iwv.3_Missense_Mutation_p.K672E|NRP1_uc009xlz.2_Missense_Mutation_p.K665E|NRP1_uc001iww.3_Missense_Mutation_p.K484E|NRP1_uc001iwy.3_Missense_Mutation_p.K665E	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	672	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	ACACTCCACTTGAGCTGCACG	0.488													108	277					0	0	0.014410	0	0	
CDH23	64072	broad.mit.edu	37	10	73544812	73544812	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:73544812C>A	uc001jrx.3	+	41	6044	c.5667C>A	c.(5665-5667)AAC>AAA	p.N1889K		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1889	Cadherin 18.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TCACCTTCAACATCACTGCGG	0.582													54	30					1.17673e-23	1.37754e-23	0.014410	1	0	
CDH23	64072	broad.mit.edu	37	10	73553038	73553038	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:73553038T>A	uc001jrx.3	+	46	6730	c.6353T>A	c.(6352-6354)ATT>AAT	p.I2118N	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2118	Cadherin 20.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CGCTTCCTCATTCATCTGGTC	0.587													12	45					0	0	0.013537	0	0	
DNAJB12	54788	broad.mit.edu	37	10	74098034	74098034	+	Silent	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:74098034G>T	uc010qjv.1	-	6	1011	c.861C>A	c.(859-861)ATC>ATA	p.I287I	DNAJB12_uc001jsz.2_Silent_p.I287I|DNAJB12_uc001jta.2_Silent_p.I287I	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	253	Helical; (Potential).				protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						TCAGGATGAGGATAGGCATCA	0.587													40	43					7.66079e-34	9.01424e-34	0.010771	1	0	
KIF11	3832	broad.mit.edu	37	10	94405294	94405294	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:94405294G>C	uc001kic.2	+	18	2750	c.2442G>C	c.(2440-2442)GAG>GAC	p.E814D	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	814					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TATCTCAAGAGACTGAACAGA	0.353													33	29					0	0	0.012213	0	0	
TCTN3	26123	broad.mit.edu	37	10	97423868	97423868	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:97423868G>C	uc001klb.3	-	14	2024	c.1780C>G	c.(1780-1782)CTG>GTG	p.L594V	TCTN3_uc001kla.3_Missense_Mutation_p.L438V|TCTN3_uc010qoi.1_Missense_Mutation_p.L446V	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	594	Helical; (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		AAGAGGCACAGGATAAGGATG	0.423													24	241					0	0	0.002780	0	0	
ABCC2	1244	broad.mit.edu	37	10	101565153	101565153	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:101565153G>A	uc001kqf.2	+	11	1618	c.1479G>A	c.(1477-1479)AAG>AAA	p.K493K		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	493	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AAAATATGAAGAATAAAGACA	0.423													33	77					0	0	0.003271	0	0	
ARL3	403	broad.mit.edu	37	10	104459163	104459163	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:104459163G>C	uc001kwa.2	-	3	389	c.231C>G	c.(229-231)TAC>TAG	p.Y77*		NM_004311	NP_004302	P36405	ARL3_HUMAN	ADP-ribosylation factor-like 3	77					cell cycle|cytokinesis|small GTPase mediated signal transduction	centrosome|cytoplasmic microtubule|Golgi membrane|midbody|nucleus|photoreceptor connecting cilium|spindle microtubule	GDP binding|GTP binding|metal ion binding|microtubule binding				0		Colorectal(252;0.122)		Epithelial(162;4.88e-09)|all cancers(201;1.29e-07)|BRCA - Breast invasive adenocarcinoma(275;0.22)		AATTCTTCCAGTATGGTCTGA	0.363													7	28					0	0	0.001984	0	0	
NEURL	9148	broad.mit.edu	37	10	105331527	105331527	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:105331527G>A	uc001kxh.2	+	3	1007	c.597G>A	c.(595-597)CCG>CCA	p.P199P		NM_004210	NP_004201	O76050	NEU1A_HUMAN	neuralized-like	199	NHR 1.				nervous system development	perinuclear region of cytoplasm	zinc ion binding				0				Epithelial(162;2.12e-09)|all cancers(201;6.99e-08)|BRCA - Breast invasive adenocarcinoma(275;0.125)		CGGCCGACCCGCTCTGGGCCC	0.662													13	66					0	0	0.001855	0	0	
SORCS3	22986	broad.mit.edu	37	10	107016591	107016591	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:107016591T>C	uc001kyi.1	+	25	3579	c.3352T>C	c.(3352-3354)TCC>CCC	p.S1118P		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1118	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATTGGTGGACTCCAGTGCTGG	0.448													31	24					0	0	0.012213	0	0	
MKI67	4288	broad.mit.edu	37	10	129908757	129908757	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:129908757C>T	uc001lke.2	-	12	2496	c.2301G>A	c.(2299-2301)CCG>CCA	p.P767P	MKI67_uc001lkf.2_Silent_p.P407P|MKI67_uc009yav.1_Silent_p.P342P|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	767					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTGTCAACTGCGGTTGCTCCT	0.403													17	150					0	0	0.006122	0	0	
GPR123	84435	broad.mit.edu	37	10	134896275	134896275	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr10:134896275G>A	uc001llw.2	+	7	1287	c.1287G>A	c.(1285-1287)CCG>CCA	p.P429P				Q86SQ6	GP123_HUMAN	RecName: Full=Probable G-protein coupled receptor 123;	Error:Variant_position_missing_in_Q86SQ6_after_alignment						integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		ACCCTGTGCCGTCCCCCTGTA	0.667													13	9					0	0	0.002450	0	0	
UBQLN3	50613	broad.mit.edu	37	11	5529220	5529220	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:5529220G>C	uc001may.1	-	2	1655	c.1569C>G	c.(1567-1569)GCC>GCG	p.A523A	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	523										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGCCGCAGGGCTTGCAGGG	0.582													5	47					0	0	0.000602	0	0	
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5656043	5656043	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:5656043C>T	uc001mbf.2	+	10	2008	c.1764C>T	c.(1762-1764)ATC>ATT	p.I588I	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Silent_p.I234I|TRIM34_uc009yeq.2_5'UTR|TRIM34_uc001mbi.2_Silent_p.I234I|TRIM34_uc001mbj.2_Silent_p.I234I	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	588						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		GAGAGCTCATCTCAGATGTGG	0.488													14	34					0	0	0.003163	0	0	
NLRP10	338322	broad.mit.edu	37	11	7982669	7982669	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:7982669G>A	uc001mfv.1	-	2	507	c.490C>T	c.(490-492)CTG>TTG	p.L164L		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	164							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GATGGGGCCAGTGAGGGCTTT	0.577													6	45					0	0	0.003080	0	0	
AMPD3	272	broad.mit.edu	37	11	10516557	10516557	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:10516557T>G	uc001mio.1	+	8	1581	c.1246T>G	c.(1246-1248)TAC>GAC	p.Y416D	AMPD3_uc010rbz.1_Missense_Mutation_p.Y257D|AMPD3_uc001min.1_Missense_Mutation_p.Y425D|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.Y423D|AMPD3_uc009yfy.2_Missense_Mutation_p.Y416D	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	416					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GGGAGGAGAGTACTTTGCTCG	0.532													44	166					0	0	0.011902	0	0	
GALNTL4	374378	broad.mit.edu	37	11	11398919	11398919	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:11398919G>C	uc001mjo.2	-	5	1208	c.787C>G	c.(787-789)CCT>GCT	p.P263A		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	263	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		GTGAGTACAGGTTCAGCCCTG	0.507													15	33					0	0	0.007413	0	0	
SOX6	55553	broad.mit.edu	37	11	15994530	15994530	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:15994530G>T	uc001mme.2	-	16	2384	c.2351C>A	c.(2350-2352)CCC>CAC	p.P784H	SOX6_uc001mmd.2_Missense_Mutation_p.P747H|SOX6_uc001mmf.2_Missense_Mutation_p.P744H|SOX6_uc001mmg.2_Missense_Mutation_p.P751H	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	771					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						CGGGAGGCTGGGCTCCGGGCT	0.512													14	100					0.000219431	0.000227731	0.002450	1	0	
SLC5A12	159963	broad.mit.edu	37	11	26708084	26708084	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:26708084T>C	uc001mra.2	-	10	1474	c.1161A>G	c.(1159-1161)TTA>TTG	p.L387L	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	387	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						TCACGCCAAATAAGAGACCTG	0.448													8	37					0	0	0.003080	0	0	
CAPRIN1	4076	broad.mit.edu	37	11	34112103	34112103	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:34112103A>C	uc001mvh.1	+	14	1621	c.1432A>C	c.(1432-1434)ACT>CCT	p.T478P	CAPRIN1_uc001mvg.2_Missense_Mutation_p.T478P|CAPRIN1_uc001mvi.2_Missense_Mutation_p.T478P|CAPRIN1_uc001mvj.1_Missense_Mutation_p.T397P	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	478					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				TACAGACCAGACTACAGCATC	0.408													9	63					0	0	0.010729	0	0	
PRDM11	56981	broad.mit.edu	37	11	45204573	45204573	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:45204573G>A	uc001myo.2	+	5	736	c.487G>A	c.(487-489)GTG>ATG	p.V163M		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	163	SET.									upper_aerodigestive_tract(1)	1						AGAGAGTGACGTGCGATGTGT	0.607													14	35					0	0	0.003163	0	0	
PSMC3	5702	broad.mit.edu	37	11	47446159	47446159	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:47446159T>G	uc001nfh.2	-	4	583	c.389A>C	c.(388-390)CAG>CCG	p.Q130P	PSMC3_uc009ylr.1_Missense_Mutation_p.Q88P	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	130					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CACGCTCACCTGTCGTGTAGA	0.552													20	58					0	0	0.012319	0	0	
AGBL2	79841	broad.mit.edu	37	11	47712177	47712177	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:47712177T>C	uc001ngg.2	-	9	1182	c.1082A>G	c.(1081-1083)AAG>AGG	p.K361R	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.K323R|AGBL2_uc001ngh.1_Missense_Mutation_p.K305R	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	361					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						CTTGTAGTACTTGATTTCATT	0.473													52	134					0	0	0.014410	0	0	
OR4A15	81328	broad.mit.edu	37	11	55135745	55135745	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:55135745T>C	uc010rif.1	+	1	386	c.386T>C	c.(385-387)CTT>CCT	p.L129P		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	129	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGGCTCAACTTTTTATGGAT	0.398													48	130					0	0	0.014410	0	0	
OR4C15	81309	broad.mit.edu	37	11	55322517	55322517	+	Silent	SNP	T	C	C	rs145900465		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:55322517T>C	uc010rig.1	+	1	735	c.735T>C	c.(733-735)ACT>ACC	p.T245T		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCACTGATACTCACATCTTTG	0.438										HNSCC(20;0.049)			18	40					0	0	0.004990	0	0	
OR8H1	219469	broad.mit.edu	37	11	56058115	56058115	+	Missense_Mutation	SNP	C	T	T	rs142532321		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:56058115C>T	uc010rje.1	-	1	424	c.424G>A	c.(424-426)GCT>ACT	p.A142T		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GTGACAAGAGCGCAACACAGC	0.443													21	57					0	0	0.008871	0	0	
TNKS1BP1	85456	broad.mit.edu	37	11	57077309	57077309	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:57077309C>T	uc001njr.2	-	5	3188	c.2876G>A	c.(2875-2877)AGG>AAG	p.R959K	TNKS1BP1_uc001njs.2_Missense_Mutation_p.R959K|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.R410K	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	959	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCTGTAGTCCCTTATCCAAGC	0.602													51	168					0	0	0.014410	0	0	
OR5B3	441608	broad.mit.edu	37	11	58170549	58170549	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:58170549G>C	uc010rkf.1	-	1	334	c.334C>G	c.(334-336)CTC>GTC	p.L112V		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAGGCCAAGAGGTAATTTTCC	0.463													25	102					0	0	0.003954	0	0	
EML3	256364	broad.mit.edu	37	11	62374527	62374527	+	Silent	SNP	C	T	T	rs149158420		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:62374527C>T	uc001ntu.1	-	12	1715	c.1407G>A	c.(1405-1407)CCG>CCA	p.P469P	EML3_uc001ntr.1_Silent_p.P441P|EML3_uc001nts.1_Silent_p.P441P|EML3_uc001ntt.1_Silent_p.P353P|EML3_uc010rly.1_Silent_p.P469P|EML3_uc009yny.1_Silent_p.P252P	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	469	WD 4.					cytoplasm|microtubule	protein binding			ovary(1)	1						TGTCTCCATCCGGAAGGAACA	0.522													14	121					0	0	0.001855	0	0	
RTN3	10313	broad.mit.edu	37	11	63517497	63517497	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:63517497G>C	uc001nxq.2	+	4	2752	c.2565G>C	c.(2563-2565)AAG>AAC	p.K855N	RTN3_uc001nxo.2_Missense_Mutation_p.K59N|RTN3_uc001nxm.2_Missense_Mutation_p.K78N|RTN3_uc001nxn.2_Missense_Mutation_p.K836N|RTN3_uc001nxp.2_Missense_Mutation_p.K59N|RTN3_uc009yov.2_Missense_Mutation_p.K743N|RTN3_uc010rmt.1_RNA|RTN3_uc010rmu.1_Missense_Mutation_p.K59N	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	855	Reticulon.				apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						ATGTGAAGAAGACTGGGTTTG	0.443													9	22					0	0	0.008291	0	0	
RASGRP2	10235	broad.mit.edu	37	11	64504226	64504226	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:64504226G>A	uc009ypu.2	-	9	1321	c.1094C>T	c.(1093-1095)ACG>ATG	p.T365M	RASGRP2_uc001oat.2_Missense_Mutation_p.T267M|RASGRP2_uc001oau.2_Missense_Mutation_p.T220M|RASGRP2_uc009ypv.2_Missense_Mutation_p.T365M|RASGRP2_uc009ypw.2_Missense_Mutation_p.T365M	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	365	Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						GCTCCTCACCGTGAGCAGGCT	0.662													4	10					0	0	0.009096	0	0	
ATG2A	23130	broad.mit.edu	37	11	64673264	64673264	+	Silent	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:64673264C>A	uc001obx.2	-	23	3436	c.3321G>T	c.(3319-3321)ACG>ACT	p.T1107T	ATG2A_uc001obw.2_5'Flank	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1107							protein binding			ovary(1)|central_nervous_system(1)	2						TGGTGATGACCGTCGGGGGCA	0.617													9	76					3.09899e-07	3.31138e-07	0.004482	1	0	
SNX32	254122	broad.mit.edu	37	11	65617469	65617469	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:65617469T>C	uc001ofr.2	+	3	347	c.220T>C	c.(220-222)TAC>CAC	p.Y74H	SNX32_uc009yqt.2_3'UTR|SNX32_uc010rop.1_Missense_Mutation_p.Y74H	NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	74	PX.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		GCATGATGCCTACGTGGAGAA	0.627													11	38					0	0	0.003163	0	0	
SNX32	254122	broad.mit.edu	37	11	65620002	65620002	+	Missense_Mutation	SNP	C	T	T	rs137872295		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:65620002C>T	uc001ofr.2	+	10	1019	c.892C>T	c.(892-894)CGT>TGT	p.R298C		NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	298	Potential.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		GTACTACATGCGTGACTCACA	0.627													10	65					0	0	0.006214	0	0	
RBM4B	83759	broad.mit.edu	37	11	66444180	66444180	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:66444180G>A	uc001oja.2	-	1	1040	c.371C>T	c.(370-372)GCA>GTA	p.A124V	RBM4B_uc001ojb.2_Missense_Mutation_p.A124V	NM_031492	NP_113680	Q9BQ04	RBM4B_HUMAN	RNA binding motif protein 4B	124	RRM 2.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|RNA splicing	nucleolus	nucleotide binding|RNA binding|zinc ion binding				0						GGCCTCCACTGCATCCTCTGC	0.537													45	123					0	0	0.014410	0	0	
NUMA1	4926	broad.mit.edu	37	11	71724269	71724269	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:71724269C>T	uc001orl.1	-	15	4452	c.4280G>A	c.(4279-4281)CGG>CAG	p.R1427Q	NUMA1_uc009ysw.1_Missense_Mutation_p.R990Q|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.R1427Q|NUMA1_uc001orn.2_Missense_Mutation_p.R990Q|NUMA1_uc009ysx.1_Missense_Mutation_p.R1427Q|NUMA1_uc001oro.1_Missense_Mutation_p.R1427Q	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1427	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						CTTCTCTGCCCGCAGCTGCTG	0.662			T	RARA	APL								22	69					0	0	0.003330	0	0	
NUMA1	4926	broad.mit.edu	37	11	71727513	71727513	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:71727513A>G	uc001orl.1	-	14	1355	c.1183T>C	c.(1183-1185)TCC>CCC	p.S395P	NUMA1_uc009ysw.1_5'Flank|NUMA1_uc001ork.1_Missense_Mutation_p.S395P|NUMA1_uc001orm.1_Missense_Mutation_p.S395P|NUMA1_uc001orn.2_5'Flank|NUMA1_uc009ysx.1_Missense_Mutation_p.S395P|NUMA1_uc001oro.1_Missense_Mutation_p.S395P	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	395	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TGCAGCTGGGACAAGTGTTCT	0.517			T	RARA	APL								18	96					0	0	0.004990	0	0	
CLPB	81570	broad.mit.edu	37	11	72006684	72006684	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:72006684C>T	uc001osj.2	-	13	1478	c.1428G>A	c.(1426-1428)CTG>CTA	p.L476L	CLPB_uc010rqx.1_Silent_p.L431L|CLPB_uc010rqy.1_Silent_p.L417L|CLPB_uc001osk.2_Silent_p.L446L|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Silent_p.L275L|CLPB_uc001osi.2_Silent_p.L84L	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	476					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TTCCATCTGTCAGCCGGCCCT	0.453													4	21					0	0	0.000602	0	0	
PDE2A	5138	broad.mit.edu	37	11	72295356	72295356	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:72295356C>T	uc010rrc.1	-	19	1782	c.1539G>A	c.(1537-1539)GAG>GAA	p.E513E	PDE2A_uc001oso.2_Silent_p.E492E|PDE2A_uc010rra.1_Silent_p.E506E|PDE2A_uc001osn.2_Silent_p.E257E|PDE2A_uc010rrb.1_Silent_p.E504E|PDE2A_uc010rrd.1_Silent_p.E398E	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	513	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CACCGATGACCTCTGGGGAAG	0.627													7	21					0	0	0.001984	0	0	
RNF169	254225	broad.mit.edu	37	11	74545757	74545757	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:74545757T>C	uc001ovl.3	+	5	892	c.879T>C	c.(877-879)TGT>TGC	p.C293C	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	293							zinc ion binding			ovary(1)	1						GTCAGAGCTGTAGTGACACAG	0.458													24	54					0	0	0.005443	0	0	
SLCO2B1	11309	broad.mit.edu	37	11	74876911	74876911	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:74876911C>A	uc001owb.2	+	4	752	c.365C>A	c.(364-366)GCT>GAT	p.A122D	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Intron|SLCO2B1_uc010rrs.1_Missense_Mutation_p.A6D|SLCO2B1_uc001owc.2_Missense_Mutation_p.A6D|SLCO2B1_uc001owd.2_Missense_Mutation_p.A100D	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	122	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GGCTATGGGGCTATCCTTGTG	0.592													52	146					2.43139e-17	2.80325e-17	0.014410	1	0	
RSF1	51773	broad.mit.edu	37	11	77412830	77412830	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:77412830T>G	uc001oyn.2	-	6	1564	c.1444A>C	c.(1444-1446)ACG>CCG	p.T482P	RSF1_uc001oym.2_Missense_Mutation_p.T230P	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	482					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			TTTCCCTCCGTGATGATATTT	0.398													51	105					0	0	0.014410	0	0	
NDUFC2	4718	broad.mit.edu	37	11	77784130	77784130	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:77784130A>C	uc009yuw.2	-	2	699	c.224T>G	c.(223-225)GTA>GGA	p.V75G		NM_004549	NP_004540	O95298	NDUC2_HUMAN	NADH dehydrogenase (ubiquinone) 1, subcomplex	75	Helical; (Potential).				mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0	all_cancers(14;2.23e-19)|all_epithelial(13;7.49e-22)|Breast(9;6.38e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;2.15e-25)		Carvedilol(DB01136)|NADH(DB00157)	TTCACGTTTTACAAGATAATA	0.353													23	77					0	0	0.003954	0	0	
TAF1D	79101	broad.mit.edu	37	11	93469351	93469351	+	Silent	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:93469351A>G	uc001ped.2	-	6	1015	c.813T>C	c.(811-813)ACT>ACC	p.T271T	SNORA8_uc001pec.2_5'Flank|TAF1D_uc001pdz.2_RNA|TAF1D_uc001pea.1_Intron|SNORD5_uc009ywf.1_5'Flank|SNORA18_uc009ywg.1_5'Flank|MIR1304_hsa-mir-1304|MI0006371_5'Flank|SNORA40_uc009ywh.2_5'Flank	NM_024116	NP_077021	Q9H5J8	TAF1D_HUMAN	TATA box binding protein (TBP)-associated	271					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						CTCTCTGTCCAGTATTTTTGG	0.353													20	129					0	0	0.004656	0	0	
TAF1D	79101	broad.mit.edu	37	11	93469380	93469380	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:93469380T>A	uc001ped.2	-	6	986	c.784A>T	c.(784-786)AAA>TAA	p.K262*	SNORA8_uc001pec.2_5'Flank|TAF1D_uc001pdz.2_RNA|TAF1D_uc001pea.1_Intron|SNORD5_uc009ywf.1_5'Flank|SNORA18_uc009ywg.1_5'Flank|MIR1304_hsa-mir-1304|MI0006371_5'Flank|SNORA40_uc009ywh.2_5'Flank	NM_024116	NP_077021	Q9H5J8	TAF1D_HUMAN	TATA box binding protein (TBP)-associated	262					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						GCTCTCTTTTTAGACAAAGCA	0.373													12	104					0	0	0.001855	0	0	
FUT4	2526	broad.mit.edu	37	11	94277451	94277451	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:94277451C>G	uc001pez.2	+	1	435	c.152C>G	c.(151-153)GCG>GGG	p.A51G	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_5'Flank	NM_002033	NP_002024	P22083	FUT4_HUMAN	fucosyltransferase 4	51	Cytoplasmic (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	alpha(1,3)-fucosyltransferase activity			skin(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CCCGGTTGGGCGTCCTGGCCA	0.761													3	8					0	0	0.004672	0	0	
DDI1	414301	broad.mit.edu	37	11	103908451	103908451	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:103908451C>A	uc001phr.2	+	1	1144	c.901C>A	c.(901-903)CGT>AGT	p.R301S	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	301					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		AATTATTGGCCGTGTTCATCT	0.483													12	45					7.03913e-09	7.76341e-09	0.013537	1	0	
NPAT	4863	broad.mit.edu	37	11	108047806	108047806	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:108047806G>T	uc001pjz.3	-	11	1020	c.918C>A	c.(916-918)CAC>CAA	p.H306Q	NPAT_uc001pka.2_Missense_Mutation_p.H101Q	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	306	Mediates transcriptional activation.|Interaction with MIZF.				positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		CTTCAGACATGTGAATTTCAC	0.313													7	28					3.09899e-07	3.31138e-07	0.004482	1	0	
ZBTB16	7704	broad.mit.edu	37	11	114057740	114057740	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:114057740C>G	uc001pop.2	+	4	1697	c.1433C>G	c.(1432-1434)ACA>AGA	p.T478R	ZBTB16_uc001poo.1_Missense_Mutation_p.T478R|ZBTB16_uc001poq.2_Missense_Mutation_p.T478R	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	478	C2H2-type 3.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GCCCTGGAGACACACAGGCAG	0.522													12	62					0	0	0.001855	0	0	
FAM55D	54827	broad.mit.edu	37	11	114453606	114453606	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:114453606T>C	uc001ppc.2	-	3	415	c.234A>G	c.(232-234)AAA>AAG	p.K78K	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	78						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		GCTGATCTAGTTTCTCTATGA	0.463													37	186					0	0	0.004878	0	0	
MFRP	83552	broad.mit.edu	37	11	119217082	119217082	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:119217082G>A	uc001pwj.2	-	2	217	c.57C>T	c.(55-57)ACC>ACT	p.T19T	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Silent_p.T19T	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		TGCAGAACTCGGTCTGGAAGG	0.592													10	42					0	0	0.013537	0	0	
OR8D4	338662	broad.mit.edu	37	11	123778075	123778075	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:123778075C>G	uc010saa.1	+	1	937	c.937C>G	c.(937-939)CCA>GCA	p.P313A		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		ATCTTTATCTCCAGGATAAAT	0.269													3	21					0	0	0.004672	0	0	
VWA5A	4013	broad.mit.edu	37	11	124012317	124012317	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr11:124012317C>T	uc001pzu.2	+	16	2101	c.1892C>T	c.(1891-1893)GCC>GTC	p.A631V	VWA5A_uc001pzt.2_Missense_Mutation_p.A631V	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	631										upper_aerodigestive_tract(1)|ovary(1)	2						TTTCGAAAGGCCTTACACTCT	0.463													13	81					0	0	0.013537	0	0	
B4GALNT3	283358	broad.mit.edu	37	12	659023	659023	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:659023T>C	uc001qii.1	+	10	942	c.942T>C	c.(940-942)GAT>GAC	p.D314D	B4GALNT3_uc001qij.1_Silent_p.D216D|B4GALNT3_uc001qik.1_5'Flank	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	314	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			TTCCCAGGGATGAGCAGCCGC	0.642													5	32					0	0	0.000602	0	0	
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458													4	114					0	0	0.009096	0	0	
CACNA1C	775	broad.mit.edu	37	12	2800085	2800085	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:2800085T>G	uc009zdu.1	+	50	6699	c.6386T>G	c.(6385-6387)CTG>CGG	p.L2129R	CACNA1C_uc009zdv.1_Missense_Mutation_p.L2043R|CACNA1C_uc001qkb.2_Missense_Mutation_p.L2046R|CACNA1C_uc001qkc.2_Missense_Mutation_p.L2065R|CACNA1C_uc001qke.2_Missense_Mutation_p.L2035R|CACNA1C_uc001qkf.2_Missense_Mutation_p.L2054R|CACNA1C_uc001qjz.2_Missense_Mutation_p.L2046R|CACNA1C_uc001qkd.2_Missense_Mutation_p.L2065R|CACNA1C_uc001qkg.2_Missense_Mutation_p.L2052R|CACNA1C_uc009zdw.1_Missense_Mutation_p.L2087R|CACNA1C_uc001qkh.2_Missense_Mutation_p.L2054R|CACNA1C_uc001qkl.2_Missense_Mutation_p.L2094R|CACNA1C_uc001qkn.2_Missense_Mutation_p.L2046R|CACNA1C_uc001qko.2_Missense_Mutation_p.L2066R|CACNA1C_uc001qkp.2_Missense_Mutation_p.L2046R|CACNA1C_uc001qkr.2_Missense_Mutation_p.L2063R|CACNA1C_uc001qku.2_Missense_Mutation_p.L2081R|CACNA1C_uc001qkq.2_Missense_Mutation_p.L2074R|CACNA1C_uc001qks.2_Missense_Mutation_p.L2046R|CACNA1C_uc001qkt.2_Missense_Mutation_p.L2065R|CACNA1C_uc001qki.1_Missense_Mutation_p.L1853R|CACNA1C_uc001qkj.1_Missense_Mutation_p.L1817R|CACNA1C_uc001qkk.1_Missense_Mutation_p.L1782R|CACNA1C_uc001qkm.1_Missense_Mutation_p.L1842R|CACNA1C_uc010sea.1_Missense_Mutation_p.L737R|uc001qkx.1_RNA|CACNA1C_uc001qky.1_Missense_Mutation_p.L364R	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	2129	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCAGAAGGACTGGGGCAGTTT	0.582													5	8					0	0	0.000602	0	0	
FGF6	2251	broad.mit.edu	37	12	4554416	4554416	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:4554416G>A	uc001qmr.1	-	1	365	c.321C>T	c.(319-321)AGC>AGT	p.S107S		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	107					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			CGTGGGTCCCGCTGATCCGGC	0.637													5	15					0	0	0.001168	0	0	
SLC2A3	6515	broad.mit.edu	37	12	8083958	8083958	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:8083958G>A	uc001qtr.2	-	4	655	c.393C>T	c.(391-393)TGC>TGT	p.C131C	SLC2A3_uc001qts.2_Silent_p.C131C	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	131	Helical; Name=4; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		TGCAGAGTCCGCAGAAGAGGC	0.537													19	73					0	0	0.008871	0	0	
CLEC6A	93978	broad.mit.edu	37	12	8610506	8610506	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:8610506G>T	uc001qum.1	+	2	161	c.44G>T	c.(43-45)TGG>TTG	p.W15L		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	15	Cytoplasmic (Potential).				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					AAAAGAGGCTGGTTGTCCCTG	0.488													14	57					6.31663e-08	6.8672e-08	0.003163	1	0	
TAS2R30	259293	broad.mit.edu	37	12	11286388	11286388	+	Silent	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:11286388A>C	uc009zhs.1	-	1	456	c.456T>G	c.(454-456)ACT>ACG	p.T152T	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_001097643	NP_001091112			type 2 taste receptor member 30												0						TTGTCCATACAGTCTCATCCA	0.378													21	174					0	0	0.010504	0	0	
PIK3C2G	5288	broad.mit.edu	37	12	18544106	18544106	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:18544106G>C	uc001rdt.2	+	14	2039	c.1923G>C	c.(1921-1923)GAG>GAC	p.E641D	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E682D|PIK3C2G_uc010sic.1_Missense_Mutation_p.E460D	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	641					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ATTCTGAAGAGAATAGAAGTA	0.378													17	33					0	0	0.006122	0	0	
KCNH3	23416	broad.mit.edu	37	12	49949443	49949443	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:49949443C>A	uc001ruh.1	+	12	2437	c.2177C>A	c.(2176-2178)TCC>TAC	p.S726Y	KCNH3_uc010smj.1_Missense_Mutation_p.S666Y	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	726	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						ACCCTTATGTCCACGCTGGAG	0.627													6	18					0.00198382	0.00203119	0.001984	1	0	
KRT81	3887	broad.mit.edu	37	12	52681408	52681408	+	Missense_Mutation	SNP	G	A	A	rs34187924	byFrequency	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:52681408G>A	uc001sab.2	-	6	1048	c.998C>T	c.(997-999)ACG>ATG	p.T333M	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_Intron	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	333	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CACCTCGGCCGTCAGCCTTTG	0.592													16	47					0	0	0.004007	0	0	
KRT4	3851	broad.mit.edu	37	12	53207397	53207397	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:53207397G>A	uc001saz.2	-	1	939	c.668C>T	c.(667-669)GCC>GTC	p.A223V		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	149						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GATGAAGGAGGCAAACTTGTT	0.582													54	200					0	0	0.014410	0	0	
CSAD	51380	broad.mit.edu	37	12	53567221	53567221	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:53567221C>T	uc001sby.2	-	3	160	c.34G>A	c.(34-36)GGG>AGG	p.G12R	CSAD_uc001sbw.2_Missense_Mutation_p.G12R|CSAD_uc009zmt.2_5'UTR|CSAD_uc010snx.1_Missense_Mutation_p.G39R|CSAD_uc001sbz.2_Missense_Mutation_p.G12R|CSAD_uc009zmu.2_Missense_Mutation_p.G12R|CSAD_uc001sca.3_RNA|CSAD_uc010sny.1_Missense_Mutation_p.G12R	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	12					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	ACTGGGTCCCCAGCAAGGGAG	0.587									Hereditary_Prostate_Cancer				19	58					0	0	0.007413	0	0	
COPZ1	22818	broad.mit.edu	37	12	54743432	54743432	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:54743432C>A	uc001sfs.1	+	8	513	c.476C>A	c.(475-477)ACC>AAC	p.T159N	COPZ1_uc001sft.2_Missense_Mutation_p.T108N|COPZ1_uc009znm.1_Missense_Mutation_p.T167N|COPZ1_uc010sot.1_Missense_Mutation_p.T136N	NM_016057	NP_057141	P61923	COPZ1_HUMAN	coatomer protein complex, subunit zeta 1	159					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol					0						ACGGAGCAGACCGTGTCTCAG	0.483													102	309					1.67525e-54	1.98827e-54	0.014410	1	0	
KIAA0748	9840	broad.mit.edu	37	12	55356846	55356846	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:55356846G>T	uc001sgn.3	-	9	946	c.836C>A	c.(835-837)CCC>CAC	p.P279H	KIAA0748_uc001sgl.3_Missense_Mutation_p.P141H|KIAA0748_uc001sgm.3_Missense_Mutation_p.P26H|KIAA0748_uc010spb.1_Missense_Mutation_p.P26H|KIAA0748_uc010spc.1_Missense_Mutation_p.P141H|KIAA0748_uc010spd.1_Missense_Mutation_p.P279H|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	279										ovary(1)|central_nervous_system(1)	2						GCGGTCTCTGGGTGACTGGGG	0.547													17	32					2.94398e-08	3.21077e-08	0.007413	1	0	
ATP5B	506	broad.mit.edu	37	12	57036523	57036523	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:57036523G>A	uc001slr.2	-	6	990	c.885C>T	c.(883-885)GAC>GAT	p.D295D		NM_001686	NP_001677	P06576	ATPB_HUMAN	mitochondrial ATP synthase beta subunit	295					angiogenesis|ATP hydrolysis coupled proton transport|regulation of intracellular pH|respiratory electron transport chain	cell surface|mitochondrial nucleoid|mitochondrial proton-transporting ATP synthase, catalytic core|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|hydrogen-exporting ATPase activity, phosphorylative mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						GACCTTCTTGGTCTCTGAAGT	0.498													20	67					0	0	0.012319	0	0	
PTPRB	5787	broad.mit.edu	37	12	70949667	70949667	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:70949667G>T	uc001swb.3	-	17	4352	c.4322C>A	c.(4321-4323)ACT>AAT	p.T1441N	PTPRB_uc010sto.1_Missense_Mutation_p.T1351N|PTPRB_uc010stp.1_Missense_Mutation_p.T1351N|PTPRB_uc001swc.3_Missense_Mutation_p.T1659N|PTPRB_uc001swa.3_Missense_Mutation_p.T1571N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1441	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CATTGTGATAGTGCTGTCTTC	0.527													17	36					2.94398e-08	3.21077e-08	0.007413	1	0	
PTPRB	5787	broad.mit.edu	37	12	70974915	70974915	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:70974915T>A	uc001swb.3	-	8	1855	c.1825A>T	c.(1825-1827)AGC>TGC	p.S609C	PTPRB_uc010sto.1_Missense_Mutation_p.S609C|PTPRB_uc010stp.1_Missense_Mutation_p.S519C|PTPRB_uc001swc.3_Missense_Mutation_p.S827C|PTPRB_uc001swa.3_Missense_Mutation_p.S827C|PTPRB_uc001swd.3_Missense_Mutation_p.S826C|PTPRB_uc009zrr.1_Missense_Mutation_p.S706C	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	609	Fibronectin type-III 7.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GAGTGGAAGCTGTATCTGCTG	0.488													50	159					0	0	0.014410	0	0	
PPFIA2	8499	broad.mit.edu	37	12	82147870	82147870	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:82147870C>T	uc001szo.1	-	3	292	c.131G>A	c.(130-132)CGT>CAT	p.R44H	PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(3)|lung(2)|pancreas(1)	6						GTCTAGAAGACGATCCCTTTC	0.532													7	30					0	0	0.001984	0	0	
C12orf51	283450	broad.mit.edu	37	12	112621028	112621028	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:112621028A>T	uc009zwc.2	-	55	9574	c.9556T>A	c.(9556-9558)TTT>ATT	p.F3186I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TTATTGTTAAATAAACTTGCT	0.378													45	229					0	0	0.014410	0	0	
KSR2	283455	broad.mit.edu	37	12	117993048	117993048	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:117993048G>A	uc001two.2	-	9	1412	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	482					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTCCGTAGAGGGTTGTTGATG	0.493													14	29					0	0	0.001855	0	0	
WSB2	55884	broad.mit.edu	37	12	118480940	118480940	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:118480940G>C	uc001twr.2	-	3	523	c.425C>G	c.(424-426)ACA>AGA	p.T142R	WSB2_uc010sza.1_5'UTR|WSB2_uc010szb.1_Intron|WSB2_uc009zws.1_Missense_Mutation_p.T142R	NM_018639	NP_061109	Q9NYS7	WSB2_HUMAN	WD SOCS-box protein 2	142	WD 1.				intracellular signal transduction					ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGACCTACCTGTCTGCACCTC	0.602													4	94					0	0	0.001168	0	0	
CIT	11113	broad.mit.edu	37	12	120128120	120128120	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:120128120G>C	uc001txi.1	-	46	5949	c.5896C>G	c.(5896-5898)CTG>GTG	p.L1966V	CIT_uc001txh.1_Missense_Mutation_p.L1484V|CIT_uc001txj.1_Missense_Mutation_p.L2008V	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1966					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TCCCTGCGCAGCTCGGTCCGC	0.726													10	19					0	0	0.006214	0	0	
P2RX7	5027	broad.mit.edu	37	12	121622455	121622455	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:121622455G>A	uc001tzm.2	+	13	1734	c.1638G>A	c.(1636-1638)CGG>CGA	p.R546R	P2RX7_uc001tzn.2_Silent_p.R456R|P2RX7_uc001tzo.2_RNA|P2RX7_uc001tzp.2_Silent_p.R257R|P2RX7_uc001tzq.2_Silent_p.R376R	NM_002562	NP_002553	Q99572	P2RX7_HUMAN	purinergic receptor P2X7	546						integral to membrane	ATP binding|ion channel activity|receptor activity			large_intestine(2)|lung(1)|breast(1)|skin(1)	5	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GCCGGCTGCGGCACTGTGCCT	0.632													4	6					0	0	0.009096	0	0	
ZCCHC8	55596	broad.mit.edu	37	12	122958648	122958648	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:122958648G>T	uc001ucn.2	-	14	1651	c.1520C>A	c.(1519-1521)TCT>TAT	p.S507Y	ZCCHC8_uc001ucl.2_Missense_Mutation_p.S118Y|ZCCHC8_uc001ucm.2_Missense_Mutation_p.S269Y|ZCCHC8_uc009zxp.2_Missense_Mutation_p.S269Y|ZCCHC8_uc009zxq.2_Missense_Mutation_p.S269Y	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	507						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		CACAGCTCCAGATGCTGTTCT	0.612													28	73					2.44723e-14	2.77488e-14	0.004656	1	0	
DNAH10	196385	broad.mit.edu	37	12	124352050	124352050	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:124352050T>C	uc001uft.3	+	41	6875	c.6850T>C	c.(6850-6852)TAT>CAT	p.Y2284H		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2284	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTTTGAGAAGTATGTGCCCTA	0.373													8	35					0	0	0.003080	0	0	
TMEM132D	121256	broad.mit.edu	37	12	129558601	129558601	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:129558601G>C	uc009zyl.1	-	9	3447	c.3119C>G	c.(3118-3120)TCA>TGA	p.S1040*	TMEM132D_uc001uia.2_Nonsense_Mutation_p.S578*	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	1040	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TTTCCTTTTTGAGGTAGGGGA	0.483													24	72					0	0	0.002780	0	0	
RIMBP2	23504	broad.mit.edu	37	12	130892274	130892274	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:130892274G>A	uc001uil.2	-	16	3086	c.2922C>T	c.(2920-2922)GTC>GTT	p.V974V		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	974	SH3 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CTGGTACCTCGACATCGACGT	0.567													69	281					0	0	0.014410	0	0	
STX2	2054	broad.mit.edu	37	12	131286027	131286027	+	Missense_Mutation	SNP	C	G	G	rs74523053		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:131286027C>G	uc001uio.2	-	7	637	c.470G>C	c.(469-471)AGA>ACA	p.R157T	STX2_uc001uip.2_Missense_Mutation_p.R157T|STX2_uc010tbj.1_Missense_Mutation_p.R157T	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	157	Cytoplasmic (Potential).				acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		TGTGGTGGTTCTCCCAGCTGA	0.517													20	68					0	0	0.010504	0	0	
ULK1	8408	broad.mit.edu	37	12	132394492	132394492	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:132394492C>T	uc001uje.2	+	10	1022	c.754C>T	c.(754-756)CGG>TGG	p.R252W		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	252	Protein kinase.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GGCCCCGCTGCGGCAGCTGCT	0.716													22	51					0	0	0.003330	0	0	
GALNT9	50614	broad.mit.edu	37	12	132681779	132681779	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr12:132681779C>G	uc001ukc.3	-	11	1801	c.1685G>C	c.(1684-1686)CGG>CCG	p.R562P	GALNT9_uc009zyr.2_Missense_Mutation_p.R336P|GALNT9_uc001ukb.2_Missense_Mutation_p.R419P|GALNT9_uc001uka.2_Missense_Mutation_p.R196P	NM_001122636	NP_001116108	Q9HCQ5	GALT9_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	562	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.49e-08)|Epithelial(86;3.55e-07)|all cancers(50;2.09e-05)		GCCCGTGGCCCGGCTCACAAT	0.637													7	52					0	0	0.003080	0	0	
ATP12A	479	broad.mit.edu	37	13	25281425	25281425	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:25281425A>G	uc001upp.2	+	17	2534	c.2347A>G	c.(2347-2349)ATC>GTC	p.I783V	ATP12A_uc010aaa.2_Missense_Mutation_p.I789V	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	783	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	AGGTCGCCTGATCTTTGACAA	0.537													34	169					0	0	0.003755	0	0	
PABPC3	5042	broad.mit.edu	37	13	25671743	25671743	+	Silent	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:25671743A>G	uc001upy.2	+	1	1468	c.1407A>G	c.(1405-1407)CGA>CGG	p.R469R		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	469					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AGGTTCCACGAGTCATGTCAA	0.428													15	117					0	0	0.003163	0	0	
SLC7A1	6541	broad.mit.edu	37	13	30109978	30109978	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:30109978G>A	uc001uso.2	-	3	735	c.348C>T	c.(346-348)AAC>AAT	p.N116N		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	116	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AGAGGATTAAGTTCCAGCCGG	0.572													17	56					0	0	0.007413	0	0	
TRPC4	7223	broad.mit.edu	37	13	38237650	38237650	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:38237650C>A	uc001uws.2	-	6	1826	c.1591G>T	c.(1591-1593)GCA>TCA	p.A531S	TRPC4_uc010abv.2_Missense_Mutation_p.A111S|TRPC4_uc001uwt.2_Missense_Mutation_p.A531S|TRPC4_uc010tey.1_Missense_Mutation_p.A531S|TRPC4_uc010abw.2_Missense_Mutation_p.A358S|TRPC4_uc010abx.2_Missense_Mutation_p.A531S|TRPC4_uc010aby.2_Missense_Mutation_p.A531S	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	531	Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AGGCCATTTGCAAATGCTAGC	0.378													24	54					5.45024e-15	6.20044e-15	0.003330	1	0	
SLC25A15	10166	broad.mit.edu	37	13	41383755	41383755	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:41383755C>G	uc001uxn.2	+	7	1180	c.858C>G	c.(856-858)GCC>GCG	p.A286A	SUGT1L1_uc001uxp.1_Intron|SLC25A15_uc010tfb.1_Silent_p.A192A|SUGT1L1_uc001uxo.1_5'Flank|MIR621_hsa-mir-621|MI0003635_5'Flank	NM_014252	NP_055067	Q9Y619	ORNT1_HUMAN	mitochondrial ornithine transporter 1	286	Solcar 3.				cellular amino acid metabolic process|mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity				0		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.48e-08)|Epithelial(112;7.51e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000191)|GBM - Glioblastoma multiforme(144;0.00231)|BRCA - Breast invasive adenocarcinoma(63;0.0704)	L-Ornithine(DB00129)	TCTTTTTGGCCTACGAATATA	0.453													25	129					0	0	0.004656	0	0	
NUFIP1	26747	broad.mit.edu	37	13	45533532	45533532	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:45533532C>G	uc001uzp.2	-	7	1047	c.1005G>C	c.(1003-1005)TTG>TTC	p.L335F		NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	335					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		CACTGTTTATCAAAACACCAA	0.403													9	157					0	0	0.006214	0	0	
C13orf18	80183	broad.mit.edu	37	13	46930568	46930568	+	Silent	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:46930568A>C	uc010acl.2	-	10	1934	c.1329T>G	c.(1327-1329)CCT>CCG	p.P443P	C13orf18_uc001vbf.3_Silent_p.P376P|C13orf18_uc001vbg.3_Silent_p.P171P|C13orf18_uc010tfz.1_Silent_p.P286P|C13orf18_uc010acm.2_Silent_p.P308P|C13orf18_uc010acn.2_Silent_p.P228P|C13orf18_uc001vbe.3_Silent_p.P443P|C13orf18_uc001vbh.3_Silent_p.P443P|C13orf18_uc001vbi.3_Silent_p.P286P|C13orf18_uc010aco.1_Silent_p.P443P	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	443											0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		CGTACTTACTAGGCTCTACTG	0.458													3	40					0	0	0.009096	0	0	
THSD1	55901	broad.mit.edu	37	13	52972273	52972273	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:52972273T>A	uc001vgo.2	-	3	660	c.115A>T	c.(115-117)AAC>TAC	p.N39Y	THSD1_uc001vgp.2_Missense_Mutation_p.N39Y|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	39	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		ACTGTGTCGTTGCTTAGTGCT	0.433													8	125					0	0	0.003080	0	0	
LECT1	11061	broad.mit.edu	37	13	53298169	53298169	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:53298169A>C	uc001vhf.2	-	4	542	c.431T>G	c.(430-432)GTG>GGG	p.V144G	LECT1_uc001vhg.2_Missense_Mutation_p.V144G|LECT1_uc001vhh.2_Intron	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	144	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		CACGGCGCCCACCTCAGGAAT	0.493													13	37					0	0	0.002450	0	0	
PCDH20	64881	broad.mit.edu	37	13	61987872	61987872	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:61987872G>A	uc001vid.3	-	2	724	c.360C>T	c.(358-360)AGC>AGT	p.S120S	PCDH20_uc010thj.1_Silent_p.S120S	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	93	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		GGGAGGCCAGGCTGAAGGAGA	0.672													7	21					0	0	0.001984	0	0	
KLHL1	57626	broad.mit.edu	37	13	70681469	70681469	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:70681469G>A	uc001vip.2	-	1	1157	c.363C>T	c.(361-363)TAC>TAT	p.Y121Y	KLHL1_uc010thm.1_Silent_p.Y121Y|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	121					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GTGACTCCACGTAGAAGAGAG	0.577													20	49					0	0	0.008871	0	0	
SLITRK6	84189	broad.mit.edu	37	13	86369359	86369359	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:86369359C>T	uc001vll.1	-	2	1744	c.1285G>A	c.(1285-1287)GGC>AGC	p.G429S	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	429	Extracellular (Potential).|LRR 8.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		AGGAACATGCCTTTACTTAAT	0.338													9	48					0	0	0.004482	0	0	
COL4A1	1282	broad.mit.edu	37	13	110815821	110815821	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr13:110815821G>T	uc001vqw.3	-	47	4360	c.4238C>A	c.(4237-4239)GCC>GAC	p.A1413D	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1413	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AGTAGGCCCGGCAGGTCCCAT	0.542													15	18					1.3612e-06	1.44773e-06	0.003163	1	0	
SUPT16H	11198	broad.mit.edu	37	14	21829373	21829373	+	Splice_Site	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:21829373C>T	uc001wao.2	-	16	2133	c.1794_splice	c.e16-1	p.I598_splice	SUPT16H_uc001wan.2_5'Flank	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation						DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		TCGGTATGTACTGCAGAAAAG	0.378													25	57					0	0	0.003330	0	0	
ACIN1	22985	broad.mit.edu	37	14	23531679	23531679	+	Silent	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:23531679G>T	uc001wit.3	-	15	3439	c.3111C>A	c.(3109-3111)ACC>ACA	p.T1037T	ACIN1_uc001wio.3_RNA|ACIN1_uc001wip.3_Silent_p.T279T|ACIN1_uc001wiq.3_Silent_p.T279T|ACIN1_uc001wir.3_Silent_p.T310T|ACIN1_uc001wis.3_Silent_p.T718T|ACIN1_uc010akg.2_Silent_p.T1024T	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	1037					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		CTTCCACCAAGGTTCCTGTGC	0.468													53	248					1.13205e-32	1.32977e-32	0.014410	1	0	
NFATC4	4776	broad.mit.edu	37	14	24842993	24842993	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:24842993G>A	uc001wpc.2	+	5	1973	c.1652G>A	c.(1651-1653)CGG>CAG	p.R551Q	NFATC4_uc010tok.1_Missense_Mutation_p.R614Q|NFATC4_uc010tol.1_Missense_Mutation_p.R614Q|NFATC4_uc010alr.2_Missense_Mutation_p.R614Q|NFATC4_uc010als.2_Missense_Mutation_p.R564Q|NFATC4_uc010tom.1_Missense_Mutation_p.R564Q|NFATC4_uc010ton.1_Missense_Mutation_p.R564Q|NFATC4_uc010too.1_Missense_Mutation_p.R564Q|NFATC4_uc010alt.2_Missense_Mutation_p.R583Q|NFATC4_uc010top.1_Missense_Mutation_p.R583Q|NFATC4_uc010toq.1_Missense_Mutation_p.R583Q|NFATC4_uc010alu.2_Missense_Mutation_p.R243Q|NFATC4_uc010tor.1_Missense_Mutation_p.R551Q|NFATC4_uc010tos.1_Missense_Mutation_p.R481Q|NFATC4_uc010tot.1_Missense_Mutation_p.R539Q|NFATC4_uc010tou.1_Missense_Mutation_p.R481Q|NFATC4_uc010tov.1_Missense_Mutation_p.R539Q|NFATC4_uc010tow.1_Missense_Mutation_p.R481Q|NFATC4_uc010alv.2_Missense_Mutation_p.R539Q|NFATC4_uc010tox.1_Missense_Mutation_p.R481Q|NFATC4_uc001wpd.2_Missense_Mutation_p.R86Q|NFATC4_uc010toy.1_Missense_Mutation_p.R86Q|NFATC4_uc010toz.1_Missense_Mutation_p.R86Q|NFATC4_uc010tpa.1_5'UTR|NFATC4_uc010tpb.1_5'UTR	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	551	RHD.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		ACACGTGTACGGCTGGTGTTC	0.607													11	72					0	0	0.008291	0	0	
FOXG1	2290	broad.mit.edu	37	14	29237640	29237640	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:29237640C>T	uc001wqe.2	+	1	1354	c.1155C>T	c.(1153-1155)GCC>GCT	p.A385A		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	385	Interaction with KDM5B.			A -> T (in Ref. 1; CAA52240 and 2; CAA55038).	axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		CCGCGCTAGCCGCCTCGGTGC	0.677													11	24					0	0	0.013537	0	0	
SNX6	58533	broad.mit.edu	37	14	35036958	35036958	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:35036958T>C	uc001wsf.1	-	13	1145	c.1137A>G	c.(1135-1137)ACA>ACG	p.T379T	SNX6_uc001wse.1_Silent_p.T251T|SNX6_uc010tpm.1_Silent_p.T255T	NM_152233	NP_689419	Q9UNH7	SNX6_HUMAN	sorting nexin 6 isoform b	367					cell communication|intracellular protein transport|negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent|negative regulation of transforming growth factor beta receptor signaling pathway|retrograde transport, endosome to Golgi	cytoplasmic vesicle membrane|early endosome membrane|nucleus	phosphatidylinositol binding|protein homodimerization activity				0	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00199)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.0245)		CAACTCTTCTTGTCTTAAAAT	0.279													7	37					0	0	0.001984	0	0	
PELI2	57161	broad.mit.edu	37	14	56757161	56757161	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:56757161A>C	uc001xch.2	+	5	969	c.683A>C	c.(682-684)CAA>CCA	p.Q228P		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	228					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						TCGGCCCAGCAACGAGGAAAG	0.557													30	90					0	0	0.010818	0	0	
SLC38A6	145389	broad.mit.edu	37	14	61449344	61449344	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:61449344T>G	uc001xfg.1	+	2	340	c.224T>G	c.(223-225)GTC>GGC	p.V75G	SLC38A6_uc001xfh.1_Missense_Mutation_p.V75G|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Missense_Mutation_p.V52G|TRMT5_uc001xff.3_5'Flank	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	75					amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		AATACCGGTGTCTTTGGATTT	0.363													11	105					0	0	0.010729	0	0	
ESR2	2100	broad.mit.edu	37	14	64699872	64699872	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:64699872T>A	uc001xha.1	-	9	2044	c.1576A>T	c.(1576-1578)AAC>TAC	p.N526Y	ESR2_uc001xgu.2_Intron|ESR2_uc001xgv.2_Intron|ESR2_uc001xgw.2_Intron|ESR2_uc001xgx.2_Intron|ESR2_uc001xgy.1_Intron|ESR2_uc001xgz.1_3'UTR|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.N435Y	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	526	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	GACTGTGGGTTCTGGGAGCCC	0.607													20	54					0	0	0.012319	0	0	
RDH11	51109	broad.mit.edu	37	14	68159758	68159758	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:68159758G>T	uc001xjv.3	-	2	176	c.86C>A	c.(85-87)TCC>TAC	p.S29Y	RDH11_uc001xjw.3_Missense_Mutation_p.S29Y|RDH11_uc001xjx.3_Missense_Mutation_p.S29Y	NM_016026	NP_057110	Q8TC12	RDH11_HUMAN	retinol dehydrogenase 11	29	Cytoplasmic (Potential).				retinol metabolic process|steroid metabolic process	endoplasmic reticulum membrane|integral to membrane	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.00047)|OV - Ovarian serous cystadenocarcinoma(108;0.00206)|BRCA - Breast invasive adenocarcinoma(234;0.00924)	Vitamin A(DB00162)	CACCCCACTGGACAGCATTTT	0.502													15	48					5.01169e-05	5.21703e-05	0.004990	1	0	
MED6	10001	broad.mit.edu	37	14	71063376	71063376	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:71063376G>A	uc001xmf.2	-	3	256	c.226C>T	c.(226-228)CCC>TCC	p.P76S	MED6_uc010tth.1_Missense_Mutation_p.P76S|MED6_uc010tti.1_Missense_Mutation_p.P76S|MED6_uc001xmg.1_Missense_Mutation_p.P76S|MED6_uc010ttj.1_Missense_Mutation_p.P76S	NM_005466	NP_005457	O75586	MED6_HUMAN	mediator of RNA polymerase II transcription,	76					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex	transcription coactivator activity				0				all cancers(60;0.00315)|BRCA - Breast invasive adenocarcinoma(234;0.00685)|OV - Ovarian serous cystadenocarcinoma(108;0.0352)		AAAAGAATGGGCTCTTGAGCA	0.373													10	61					0	0	0.013537	0	0	
DCAF4	26094	broad.mit.edu	37	14	73422256	73422256	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:73422256G>A	uc001xng.2	+	12	1251	c.1031G>A	c.(1030-1032)CGC>CAC	p.R344H	DCAF4_uc001xnj.2_Missense_Mutation_p.R338H|DCAF4_uc010ttr.1_Missense_Mutation_p.R323H|DCAF4_uc001xnh.2_Missense_Mutation_p.R244H|DCAF4_uc010tts.1_Missense_Mutation_p.R284H|DCAF4_uc010ttt.1_Missense_Mutation_p.R130H|DCAF4_uc001xni.2_Missense_Mutation_p.R174H|DCAF4_uc001xnk.2_Missense_Mutation_p.R344H	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	344						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AATGGCTGCCGCTCTGGGGAA	0.562													57	190					0	0	0.014410	0	0	
C14orf115	55237	broad.mit.edu	37	14	74823592	74823592	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:74823592C>G	uc001xpw.3	+	2	297	c.106C>G	c.(106-108)CAG>GAG	p.Q36E		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	36					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GGAGGCCAAGCAGGTCCTGTC	0.622													25	60					0	0	0.003330	0	0	
FLRT2	23768	broad.mit.edu	37	14	86088581	86088581	+	Silent	SNP	G	A	A	rs145351543	byFrequency	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:86088581G>A	uc001xvr.2	+	2	1490	c.723G>A	c.(721-723)TCG>TCA	p.S241S	FLRT2_uc010atd.2_Silent_p.S241S	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	241	Extracellular (Potential).|LRR 8.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TACGTAATTCGCTGTCCCACC	0.502													25	85					0	0	0.003330	0	0	
SERPINA10	51156	broad.mit.edu	37	14	94756223	94756223	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:94756223G>C	uc001yct.2	-	2	1174	c.708C>G	c.(706-708)ATC>ATG	p.I236M	SERPINA10_uc001ycu.3_Missense_Mutation_p.I236M	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	236					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		CTTTGAACAAGATGTAATCCA	0.413													11	52					0	0	0.010729	0	0	
MIR376A2	664615	broad.mit.edu	37	14	101506431	101506431	+	RNA	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:101506431C>G	hsa-mir-376a-2|MI0003529	+			c.26C>G			MIR654_hsa-mir-654|MI0003676_5'Flank|MIR376B_hsa-mir-376b|MI0002466_5'Flank|uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						GATTTTCCTTCTATGGTTACG	0.413													20	105					0	0	0.010504	0	0	
ADAM6	8755	broad.mit.edu	37	14	107218934	107218934	+	RNA	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:107218934A>G	uc010tyt.1	-	12		c.780T>C								Parts of antibodies, mostly variable regions.												0						CCCCAGGCTGAACTAAGCCTC	0.592													25	111					0	0	0.008361	0	0	
ADAM6	8755	broad.mit.edu	37	14	107218937	107218937	+	RNA	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr14:107218937T>C	uc010tyt.1	-	12		c.777A>G								Parts of antibodies, mostly variable regions.												0						CAGGCTGAACTAAGCCTCCCC	0.592													25	113					0	0	0.010818	0	0	
Unknown	0	broad.mit.edu	37	15	22472967	22472967	+	RNA	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:22472967G>A	uc001yuj.1	-	2		c.304C>T								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		ACAGAGCTCAGCTTCAGGGAG	0.557													43	692					0	0	0.014410	0	0	
ATP10A	57194	broad.mit.edu	37	15	25966922	25966922	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:25966922C>T	uc010ayu.2	-	7	1351	c.1245G>A	c.(1243-1245)ACG>ACA	p.T415T		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	415	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CTAAGTCTTCCGTGATGTTCA	0.423													38	81					0	0	0.010771	0	0	
Unknown	0	broad.mit.edu	37	15	28600014	28600014	+	Splice_Site	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:28600014C>A	uc010uaf.1	-	4	247	c.229_splice	c.e4-1	p.A77_splice						SubName: Full=Putative uncharacterized protein ENSP00000383535; Flags: Fragment;																		GAACCTGGGCCTTTGGGAGAA	0.488													8	155					1.06961e-07	1.15917e-07	0.003080	1	0	
TRPM1	4308	broad.mit.edu	37	15	31362292	31362292	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:31362292G>A	uc001zfm.2	-	3	283	c.155C>T	c.(154-156)CCA>CTA	p.P52L	TRPM1_uc010azy.2_5'Flank|TRPM1_uc001zfl.2_5'Flank|TRPM1_uc001zfn.3_Missense_Mutation_p.P52L|uc010ubn.1_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	52	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GGAATCTGTTGGGTAGCTCTG	0.493													165	352					0	0	0.014410	0	0	
RYR3	6263	broad.mit.edu	37	15	34080419	34080420	+	Missense_Mutation	DNP	TG	CA	CA			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:34080419_34080420TG>CA	uc001zhi.2	+	67	9660_9661	c.9590_9591TG>CA	c.(9589-9591)GTG>GCA	p.V3197A	RYR3_uc010bar.2_Missense_Mutation_p.V3197A	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3197					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTAAACGCAGTGTATGCACAGC	0.5													23	154					0	0	0.004672	0	0	
DISP2	85455	broad.mit.edu	37	15	40657356	40657356	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:40657356C>T	uc001zlk.1	+	6	817	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	243					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		AGCTCGAGCTCCCACAACACT	0.602													19	109					0	0	0.007413	0	0	
CASC5	57082	broad.mit.edu	37	15	40914168	40914168	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:40914168G>C	uc010bbs.1	+	11	1945	c.1784G>C	c.(1783-1785)GGT>GCT	p.G595A	CASC5_uc010ucq.1_Missense_Mutation_p.G419A|CASC5_uc001zme.2_Missense_Mutation_p.G569A|CASC5_uc010bbt.1_Missense_Mutation_p.G569A	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	595	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		CTCTTATCAGGTGAAAATATG	0.393													3	47					0	0	0.004672	0	0	
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138151	42138151	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:42138151C>T	uc010bco.2	+	16	1607	c.1506C>T	c.(1504-1506)AGC>AGT	p.S502S	JMJD7-PLA2G4B_uc001zoo.3_Silent_p.S733S|JMJD7-PLA2G4B_uc010bcn.2_Silent_p.S733S|JMJD7-PLA2G4B_uc001zoq.3_Silent_p.S203S|JMJD7-PLA2G4B_uc001zor.1_Silent_p.S203S	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	502	PLA2c.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						GTATCTGGAGCAACCTGTATG	0.602													12	45					0	0	0.001855	0	0	
GLDN	342035	broad.mit.edu	37	15	51687079	51687079	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:51687079G>C	uc002aba.2	+	5	758	c.589G>C	c.(589-591)GAC>CAC	p.D197H	GLDN_uc002abb.2_Missense_Mutation_p.D73H	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	197	Collagen-like 2.|Extracellular (Potential).				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AGAAAAGGGAGACCATGGTGA	0.527													9	38					0	0	0.010729	0	0	
CGNL1	84952	broad.mit.edu	37	15	57808977	57808977	+	Splice_Site	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:57808977G>C	uc002aeg.2	+	9	2480	c.2404_splice	c.e9-1	p.N802_splice	CGNL1_uc010bfw.2_Splice_Site_p.N802_splice	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1							myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GTTTTTAACAGAATGTCGAGG	0.507													6	31					0	0	0.001168	0	0	
CGNL1	84952	broad.mit.edu	37	15	57815798	57815798	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:57815798C>T	uc002aeg.2	+	11	2903	c.2827C>T	c.(2827-2829)CGG>TGG	p.R943W	CGNL1_uc010bfw.2_Missense_Mutation_p.R943W	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	943	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GGAGAATGAGCGGTGGCACCT	0.527													24	66					0	0	0.003330	0	0	
APH1B	83464	broad.mit.edu	37	15	63571457	63571457	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:63571457C>G	uc002ama.2	+	2	285	c.211C>G	c.(211-213)CTG>GTG	p.L71V	APH1B_uc002amb.2_Missense_Mutation_p.L71V|APH1B_uc010bgq.2_Missense_Mutation_p.L17V|APH1B_uc010bgr.2_Missense_Mutation_p.L17V	NM_031301	NP_112591	Q8WW43	APH1B_HUMAN	presenilin stabilization factor-like isoform 1	71	Helical; Name=3; (Potential).				apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	integral to membrane|plasma membrane|transport vesicle	peptidase activity|protein binding				0						ACAGAAATATCTGCTGATCTT	0.378													32	105					0	0	0.010818	0	0	
TRIP4	9325	broad.mit.edu	37	15	64686249	64686249	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:64686249C>A	uc002anm.2	+	2	249	c.206C>A	c.(205-207)ACC>AAC	p.T69N		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4	69					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						GAACTTATAACCAAATGGCAA	0.348													8	39					1.12685e-05	1.18561e-05	0.004482	1	0	
PIF1	80119	broad.mit.edu	37	15	65113607	65113607	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:65113607C>G	uc002ant.2	-	5	996	c.930G>C	c.(928-930)ATG>ATC	p.M310I	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_Missense_Mutation_p.M1I|PIF1_uc010uiq.1_Missense_Mutation_p.M310I	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	310	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CTGCCTCCACCATTGAGATCT	0.617													13	152					0	0	0.001855	0	0	
IQCH	64799	broad.mit.edu	37	15	67768148	67768148	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:67768148G>A	uc002aqo.1	+	18	2838	c.2791G>A	c.(2791-2793)GAT>AAT	p.D931N	IQCH_uc002aqq.1_Missense_Mutation_p.D588N|IQCH_uc002aqp.1_Missense_Mutation_p.D592N|uc002aqr.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	931										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CATTGGCTATGATGTTGAGGT	0.483													28	44					0	0	0.006320	0	0	
THAP10	56906	broad.mit.edu	37	15	71174850	71174850	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:71174850C>A	uc002asv.2	-	3	859	c.717G>T	c.(715-717)AAG>AAT	p.K239N	LRRC49_uc002asu.2_Intron	NM_020147	NP_064532	Q9P2Z0	THA10_HUMAN	THAP domain containing 10	239							DNA binding|metal ion binding			ovary(1)|skin(1)	2						TCTGTTCACTCTTGATATCCC	0.368													79	102					2.16136e-38	2.54758e-38	0.014410	1	0	
MAN2C1	4123	broad.mit.edu	37	15	75648717	75648717	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:75648717G>C	uc002baf.2	-	24	2828	c.2811C>G	c.(2809-2811)CCC>CCG	p.P937P	MIR631_hsa-mir-631|MI0003645_5'Flank|MAN2C1_uc002bag.2_Silent_p.P914P|MAN2C1_uc002bah.2_Silent_p.P954P|MAN2C1_uc010bkk.2_Silent_p.P838P	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	937					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						GCGCTGGGCTGGGGGCTGGCA	0.622													8	19					0	0	0.003080	0	0	
KIAA1199	57214	broad.mit.edu	37	15	81235367	81235367	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:81235367C>T	uc002bfw.1	+	27	4041	c.3781C>T	c.(3781-3783)CAC>TAC	p.H1261Y	KIAA1199_uc010unn.1_Missense_Mutation_p.H1261Y	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1261										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CGTGGTGAGCCACACGAGCTT	0.552													45	383					0	0	0.014410	0	0	
FSD2	123722	broad.mit.edu	37	15	83437669	83437669	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:83437669T>A	uc002bjd.2	-	9	1683	c.1516A>T	c.(1516-1518)ACC>TCC	p.T506S	FSD2_uc010uol.1_Missense_Mutation_p.T461S|FSD2_uc010uom.1_Missense_Mutation_p.T461S	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	506	Fibronectin type-III 2.									central_nervous_system(1)	1						TCAGCCTGGGTCAGCTCCACA	0.512													4	21					0	0	0.009096	0	0	
NMB	4828	broad.mit.edu	37	15	85200517	85200517	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:85200517G>A	uc002bkz.2	-	2	639	c.220C>T	c.(220-222)CAC>TAC	p.H74Y	WDR73_uc002bkw.2_5'Flank|WDR73_uc002bkx.2_5'Flank|WDR73_uc010upa.1_5'Flank|NMB_uc002bla.2_Missense_Mutation_p.H74Y	NM_021077	NP_066563	P08949	NMB_HUMAN	neuromedin B isoform 1	74				PLGTAPHTS -> HWGQLPTPP (in Ref. 1; AAA59934).	cell-cell signaling|neuropeptide signaling pathway	extracellular region|soluble fraction	hormone activity				0				all cancers(203;3.5e-06)		AGGGAGGTGTGGGGAGCTGTC	0.607													7	4					0	0	0.001984	0	0	
KLHL25	64410	broad.mit.edu	37	15	86311917	86311917	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:86311917C>T	uc002bly.2	-	2	1328	c.1125G>A	c.(1123-1125)CTG>CTA	p.L375L		NM_022480	NP_071925	Q9H0H3	ENC2_HUMAN	BTB/POZ KELCH domain protein	375	Kelch 2.					cytoplasm				ovary(2)	2						AGCGGGCAATCAGCATGGGCG	0.627													5	53					0	0	0.001168	0	0	
FURIN	5045	broad.mit.edu	37	15	91424224	91424224	+	Silent	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:91424224A>G	uc002bpu.1	+	15	1962	c.1746A>G	c.(1744-1746)CCA>CCG	p.P582P		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	582	Cys-rich.				cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CCGTACCTCCAGAAAGCAGTG	0.622													5	110					0	0	0.001168	0	0	
ST8SIA2	8128	broad.mit.edu	37	15	93007443	93007443	+	Missense_Mutation	SNP	C	T	T	rs143696221	by1000genomes	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr15:93007443C>T	uc002bra.2	+	6	1111	c.956C>T	c.(955-957)CCG>CTG	p.P319L	ST8SIA2_uc002brb.2_Missense_Mutation_p.P298L	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	319	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			TGGCCCTTTCCGCTGGATCAG	0.517													42	42					0	0	0.010771	0	0	
RHBDL1	9028	broad.mit.edu	37	16	727688	727688	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:727688C>A	uc002cis.1	+	6	1061	c.1034C>A	c.(1033-1035)GCC>GAC	p.A345D	RHBDL1_uc002cir.1_Missense_Mutation_p.A280D|RHBDL1_uc010uun.1_Silent_p.G306G|STUB1_uc002cit.2_5'Flank|STUB1_uc002ciu.2_5'Flank|STUB1_uc010bqz.2_5'Flank|STUB1_uc002civ.2_5'Flank	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	345	Helical; (Potential).				proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				ATGGTGCTGGCCTTGGTGTGC	0.667													9	34					0.000673444	0.000695757	0.008291	1	0	
IFT140	9742	broad.mit.edu	37	16	1637198	1637198	+	Splice_Site	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:1637198C>A	uc002cmb.2	-	9	1371	c.1009_splice	c.e9+1	p.G337_splice	IFT140_uc002clz.2_5'Flank	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140											ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				GGAAGCCTCACCTTTGACTTT	0.448													18	67					6.94344e-10	7.71994e-10	0.006122	1	0	
CASKIN1	57524	broad.mit.edu	37	16	2231826	2231826	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:2231826C>T	uc010bsg.1	-	17	1766	c.1734G>A	c.(1732-1734)TGG>TGA	p.W578*		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	578	SAM 2.				signal transduction	cytoplasm				skin(2)	2						GCAGGTCCTCCCAGGTGATGT	0.393													44	67					0	0	0.014410	0	0	
ZNF213	7760	broad.mit.edu	37	16	3191066	3191066	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:3191066G>A	uc010uws.1	+	6	1545	c.1098G>A	c.(1096-1098)GTG>GTA	p.V366V	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Silent_p.V366V|ZNF213_uc010uwt.1_3'UTR	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	366	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCAAGGCGTGCACACGGGCG	0.672													9	37					0	0	0.004482	0	0	
ZNF200	7752	broad.mit.edu	37	16	3282916	3282916	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:3282916G>A	uc002cuj.2	-	3	888	c.256C>T	c.(256-258)CCT>TCT	p.P86S	ZNF200_uc002cum.3_Missense_Mutation_p.P86S|ZNF200_uc010bti.2_Missense_Mutation_p.P86S|ZNF200_uc002cuk.2_Missense_Mutation_p.P86S|ZNF200_uc002cui.2_Missense_Mutation_p.P86S|ZNF200_uc002cul.3_Missense_Mutation_p.P86S	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	86					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AAGGGACGAGGATGCACTGGG	0.493													5	34					0	0	0.001168	0	0	
GLYR1	84656	broad.mit.edu	37	16	4862095	4862095	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:4862095A>G	uc002cxx.3	-	13	1311	c.1274T>C	c.(1273-1275)TTC>TCC	p.F425S	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.F339S|GLYR1_uc002cya.2_Missense_Mutation_p.F419S|GLYR1_uc010uxv.1_Missense_Mutation_p.F344S	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	425					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						ACCTAGGAAGAAGGAGGTCTT	0.572													22	36					0	0	0.014323	0	0	
A2BP1	54715	broad.mit.edu	37	16	7568333	7568333	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:7568333C>T	uc002cys.2	+	5	1200	c.212C>T	c.(211-213)ACG>ATG	p.T71M	A2BP1_uc010buf.1_Missense_Mutation_p.T71M|A2BP1_uc002cyr.1_Missense_Mutation_p.T71M|A2BP1_uc002cyt.2_Missense_Mutation_p.T71M|A2BP1_uc010uxz.1_Missense_Mutation_p.T114M|A2BP1_uc010uya.1_Missense_Mutation_p.T107M|A2BP1_uc002cyv.1_Missense_Mutation_p.T71M|A2BP1_uc010uyb.1_Missense_Mutation_p.T71M|A2BP1_uc002cyw.2_Missense_Mutation_p.T91M|A2BP1_uc002cyy.2_Missense_Mutation_p.T91M|A2BP1_uc002cyx.2_Missense_Mutation_p.T91M|A2BP1_uc010uyc.1_Missense_Mutation_p.T91M	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	71					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCCGCCCAGACGCACTCCGAG	0.652													36	156					0	0	0.008740	0	0	
GRIN2A	2903	broad.mit.edu	37	16	9858092	9858092	+	Silent	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:9858092G>T	uc002czo.3	-	13	3857	c.3309C>A	c.(3307-3309)CGC>CGA	p.R1103R	GRIN2A_uc010uym.1_Silent_p.R1103R|GRIN2A_uc010uyn.1_Silent_p.R946R|GRIN2A_uc002czr.3_Silent_p.R1103R	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1103	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCAGGTAGGTGCGCTCGACCT	0.483													40	162					1.7489e-18	2.01978e-18	0.011902	1	0	
ACSM1	116285	broad.mit.edu	37	16	20693649	20693649	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:20693649G>A	uc002dhm.1	-	3	608	c.540C>T	c.(538-540)CCC>CCT	p.P180P	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.P180P	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	180					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						TTTTCAGAGAGGGGCACTGAG	0.498													18	54					0	0	0.007413	0	0	
AQP8	343	broad.mit.edu	37	16	25238439	25238439	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:25238439C>T	uc002doc.2	+	5	735	c.653C>T	c.(652-654)GCG>GTG	p.A218V		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	218	Extracellular (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		TTTGGACCTGCGGTGGTGGCC	0.607													5	56					0	0	0.000602	0	0	
CLN3	1201	broad.mit.edu	37	16	28488892	28488892	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:28488892G>C	uc002dpo.2	-	15	1585	c.1262C>G	c.(1261-1263)TCC>TGC	p.S421C	uc010vct.1_Intron|CLN3_uc002dpl.2_Missense_Mutation_p.S343C|CLN3_uc010vcu.1_Missense_Mutation_p.S321C|CLN3_uc002dpn.2_Missense_Mutation_p.S322C|CLN3_uc002dpm.2_Missense_Mutation_p.S367C|CLN3_uc010vcv.1_Missense_Mutation_p.S397C|CLN3_uc010byd.2_Missense_Mutation_p.S324C|CLN3_uc002dpp.2_Missense_Mutation_p.S421C|CLN3_uc002dpt.1_Missense_Mutation_p.S321C|CLN3_uc002dpq.1_Missense_Mutation_p.S373C|CLN3_uc010bye.1_Missense_Mutation_p.S404C|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Missense_Mutation_p.S294C|CLN3_uc002dpu.1_Missense_Mutation_p.S319C	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	421	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CCCCGACAGGGAGATCCCCAG	0.607													25	63					0	0	0.003330	0	0	
LOC595101	595101	broad.mit.edu	37	16	30311210	30311210	+	RNA	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:30311210T>C	uc002dxp.1	-	5		c.896A>G				NR_002453				Homo sapiens cDNA FLJ39663 fis, clone SMINT2007187.												0						GCACATCATGTACAGCAGCCA	0.259													17	59					0	0	0.007413	0	0	
RNF40	9810	broad.mit.edu	37	16	30783174	30783174	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:30783174G>C	uc002dzq.2	+	18	2730	c.2607G>C	c.(2605-2607)CTG>CTC	p.L869L	RNF40_uc010caa.2_Silent_p.L869L|RNF40_uc010cab.2_Silent_p.L769L|RNF40_uc010vfa.1_Silent_p.L201L|RNF40_uc002dzr.2_Silent_p.L869L|RNF40_uc010vfb.1_Silent_p.L561L|RNF40_uc010vfc.1_Silent_p.L201L	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	869	Potential.				histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			CCGCCCAGCTGGCCGAGGACC	0.632													14	73					0	0	0.004990	0	0	
ARMC5	79798	broad.mit.edu	37	16	31475984	31475984	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:31475984C>G	uc002ecc.2	+	4	2169	c.1640C>G	c.(1639-1641)GCG>GGG	p.A547G	ARMC5_uc010vfn.1_Missense_Mutation_p.A642G|ARMC5_uc010vfo.1_Missense_Mutation_p.A579G|ARMC5_uc002eca.3_Missense_Mutation_p.A547G|ARMC5_uc010vfp.1_Missense_Mutation_p.A355G|ARMC5_uc002ecb.2_Missense_Mutation_p.A547G	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	547							binding			pancreas(1)	1						ACCGGCCCGGCGCTGTACGGC	0.697													3	24					0	0	0.009096	0	0	
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													7	81					0	0	0.003080	0	0	
HEATR3	55027	broad.mit.edu	37	16	50100171	50100171	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:50100171G>C	uc002efw.2	+	1	291	c.129G>C	c.(127-129)CTG>CTC	p.L43L	HEATR3_uc002efx.2_Missense_Mutation_p.C15S	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	43	HEAT 1.						binding			ovary(1)|skin(1)	2						CGGCGGAGCTGCTGGAAAAGG	0.711													4	8					0	0	0.009096	0	0	
SALL1	6299	broad.mit.edu	37	16	51174348	51174348	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:51174348G>A	uc010vgs.1	-	2	1816	c.1785C>T	c.(1783-1785)TCC>TCT	p.S595S	SALL1_uc010vgr.1_Silent_p.S498S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	595					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CAGGGCCCCCGGAGTCACTTT	0.612													11	45					0	0	0.010729	0	0	
CHD9	80205	broad.mit.edu	37	16	53190912	53190912	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:53190912A>C	uc002ehb.2	+	1	1075	c.911A>C	c.(910-912)GAT>GCT	p.D304A	CHD9_uc002egy.2_Missense_Mutation_p.D304A|CHD9_uc002egz.1_Missense_Mutation_p.D304A|CHD9_uc002eha.1_Missense_Mutation_p.D304A|CHD9_uc002ehc.2_Missense_Mutation_p.D304A	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	304	Ser-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				ACTTTATCTGATTTTACTGGA	0.338													34	87					0	0	0.012213	0	0	
SLC12A3	6559	broad.mit.edu	37	16	56903669	56903669	+	Silent	SNP	G	A	A	rs140931462		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:56903669G>A	uc010ccm.2	+	4	563	c.534G>A	c.(532-534)TCG>TCA	p.S178S	SLC12A3_uc002ekd.3_Silent_p.S178S|SLC12A3_uc010ccn.2_Silent_p.S177S	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	178	Helical; (Potential).		S -> L (in GS).		sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	TCCTGCTGTCGGTCACGGTGA	0.522													16	39					0	0	0.006122	0	0	
RRAD	6236	broad.mit.edu	37	16	66958847	66958847	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:66958847G>A	uc002eqn.2	-	2	388	c.236C>T	c.(235-237)TCG>TTG	p.S79L	RRAD_uc002eqo.2_Missense_Mutation_p.S79L	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	79					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		TGAGCTGAGCGAGTCCTCGGA	0.741													5	11					0	0	0.000602	0	0	
EXOC3L	283849	broad.mit.edu	37	16	67219060	67219060	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:67219060G>A	uc002erx.1	-	11	1969	c.1728C>T	c.(1726-1728)CGC>CGT	p.R576R	KIAA0895L_uc002ert.2_5'Flank|KIAA0895L_uc002eru.2_5'Flank|EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Silent_p.R227R|EXOC3L_uc002ery.1_Silent_p.R478R|EXOC3L_uc010vje.1_Silent_p.R473R	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	576					exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		GGTTCCGCACGCGCCAGAAGT	0.677													7	50					0	0	0.001984	0	0	
SLC9A5	6553	broad.mit.edu	37	16	67290884	67290884	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:67290884G>C	uc002esm.2	+	7	1266	c.1203G>C	c.(1201-1203)GTG>GTC	p.V401V	SLC9A5_uc010cee.2_Silent_p.V106V|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	401	Helical; (Potential).				regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		ACCAAGTGGTGATGTCCTATG	0.587													32	93					0	0	0.010818	0	0	
RLTPR	146206	broad.mit.edu	37	16	67681832	67681832	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:67681832G>C	uc002etn.2	+	13	1162	c.1042G>C	c.(1042-1044)GGG>CGG	p.G348R	RLTPR_uc010cel.1_Missense_Mutation_p.G348R|RLTPR_uc010vjr.1_Missense_Mutation_p.G348R	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	348	LRR 6.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TGGGAATCCTGGGGCGCTGGG	0.662													4	23					0	0	0.000602	0	0	
SF3B3	23450	broad.mit.edu	37	16	70575719	70575719	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:70575719T>C	uc002ezf.2	+	9	1426	c.1215T>C	c.(1213-1215)TCT>TCC	p.S405S		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	405					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				ACAGCCTCTCTCCCATTCTGT	0.428													41	125					0	0	0.005524	0	0	
ZFHX3	463	broad.mit.edu	37	16	72992656	72992656	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:72992656C>T	uc002fck.2	-	2	2062	c.1389G>A	c.(1387-1389)GCG>GCA	p.A463A	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	463	Poly-Glu.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				cttcctcctccgcctcctctt	0.318													10	55					0	0	0.008291	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77323228	77323228	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:77323228C>G	uc002ffc.3	-	22	3902	c.3483G>C	c.(3481-3483)CTG>CTC	p.L1161L		NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1161	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCTGATGGAGCAGACAACTTG	0.537													18	122					0	0	0.006122	0	0	
SLC7A5	8140	broad.mit.edu	37	16	87866582	87866582	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr16:87866582C>G	uc002fkm.2	-	10	1590	c.1518G>C	c.(1516-1518)GAG>GAC	p.E506D		NM_003486	NP_003477	Q01650	LAT1_HUMAN	solute carrier family 7 (cationic amino acid	506					blood coagulation|cell differentiation|cellular amino acid metabolic process|ion transport|leukocyte migration|nervous system development	apical plasma membrane|cytosol|integral to membrane	neutral amino acid transmembrane transporter activity|peptide antigen binding				0				BRCA - Breast invasive adenocarcinoma(80;0.049)		CTGGCTATGTCTCCTGGGGGA	0.622													54	149					0	0	0.014410	0	0	
FAM101B	359845	broad.mit.edu	37	17	293071	293071	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:293071C>T	uc002frj.2	-	2	593	c.319G>A	c.(319-321)GTC>ATC	p.V107I		NM_182705	NP_874364	Q8N5W9	F101B_HUMAN	hypothetical protein LOC359845	177											0		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.0216)		GTGGTGTAGACGGCCTTGGGG	0.642													28	33					0	0	0.008361	0	0	
PRPF8	10594	broad.mit.edu	37	17	1565203	1565203	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:1565203A>C	uc002fte.2	-	25	4133	c.4019T>G	c.(4018-4020)CTC>CGC	p.L1340R		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	1340						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		GCTGTACCTGAGGTCGGATTG	0.488													10	88					0	0	0.013537	0	0	
ZMYND15	84225	broad.mit.edu	37	17	4648177	4648177	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:4648177G>C	uc002fyt.2	+	11	1772	c.1733G>C	c.(1732-1734)GGG>GCG	p.G578A	ZMYND15_uc002fyv.2_Missense_Mutation_p.G617A|ZMYND15_uc002fyu.2_Missense_Mutation_p.G625A	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	578							zinc ion binding				0						TTTAACTCCGGGTTTGCTCTC	0.607													14	106					0	0	0.002450	0	0	
SLC2A4	6517	broad.mit.edu	37	17	7187687	7187687	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:7187687C>T	uc002gfp.2	+	6	916	c.716C>T	c.(715-717)CCT>CTT	p.P239L	SLC2A4_uc002gfo.2_Missense_Mutation_p.P239L|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	239	Cytoplasmic (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						CTCGAGGGGCCTGCCAGAAAG	0.642													3	22					0	0	0.004672	0	0	
NLGN2	57555	broad.mit.edu	37	17	7317669	7317669	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:7317669G>A	uc002ggt.1	+	3	588	c.515G>A	c.(514-516)CGT>CAT	p.R172H		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	172	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				ACAGATATCCGTGACCCTGGG	0.627													8	14					0	0	0.004482	0	0	
WRAP53	55135	broad.mit.edu	37	17	7604143	7604143	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:7604143T>G	uc010vuh.1	+	5	882	c.727T>G	c.(727-729)TCC>GCC	p.S243A	WRAP53_uc010vui.1_Missense_Mutation_p.S243A|WRAP53_uc002gip.2_Missense_Mutation_p.S243A|WRAP53_uc002gir.2_Missense_Mutation_p.S243A|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.S210A|WRAP53_uc010vuj.1_Missense_Mutation_p.S24A	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	243	WD 2.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						GCCAGACACCTCCTAGTAAGT	0.557													7	72					0	0	0.003080	0	0	
DNAH2	146754	broad.mit.edu	37	17	7705023	7705023	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:7705023G>T	uc002giu.1	+	56	8841	c.8827G>T	c.(8827-8829)GAG>TAG	p.E2943*	DNAH2_uc010cnm.1_5'Flank	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2943	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GGGAACTCAGGAGAATGTGAG	0.308													7	49					2.0095e-06	2.13392e-06	0.001984	1	0	
MYH13	8735	broad.mit.edu	37	17	10227552	10227552	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:10227552T>C	uc002gmk.1	-	23	2811	c.2721A>G	c.(2719-2721)GAA>GAG	p.E907E	MYH13_uc010vve.1_Silent_p.E5E	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	907	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CTTCACACCGTTCCTCAGCGT	0.428													22	65					0	0	0.014323	0	0	
MYH4	4622	broad.mit.edu	37	17	10355590	10355590	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:10355590C>A	uc002gmn.2	-	27	3517	c.3406G>T	c.(3406-3408)GCA>TCA	p.A1136S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1136	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGCTTCTCTGCTTTGGCCCGG	0.552													16	100					5.3912e-06	5.68979e-06	0.006122	1	0	
MYH2	4620	broad.mit.edu	37	17	10435038	10435038	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:10435038G>T	uc010coi.2	-	22	2737	c.2609C>A	c.(2608-2610)GCC>GAC	p.A870D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.A870D|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	870	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCTGACTTGGCAAGTTCGTC	0.418													15	97					1.15088e-07	1.24136e-07	0.004007	1	0	
NCOR1	9611	broad.mit.edu	37	17	16040687	16040688	+	Nonsense_Mutation	DNP	TC	AA	AA			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:16040687_16040688TC>AA	uc002gpo.2	-	14	1686_1687	c.1446_1447GA>TT	c.(1444-1449)AAGAAA>AATTAA	p.482_483KK>N*	NCOR1_uc002gpn.2_Nonsense_Mutation_p.482_483KK>N*|NCOR1_uc002gpp.1_Nonsense_Mutation_p.373_374KK>N*|NCOR1_uc002gpr.2_Nonsense_Mutation_p.373_374KK>N*|NCOR1_uc002gps.1_Nonsense_Mutation_p.491_492KK>N*|NCOR1_uc010coz.1_Nonsense_Mutation_p.298_299KK>N*|NCOR1_uc010cpb.1_Nonsense_Mutation_p.491_492KK>N*|NCOR1_uc010cpa.1_Nonsense_Mutation_p.482_483KK>N*	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	482_483	SANT 1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTCTCATTTTTCTTGGTTAAAT	0.297													12	32					0	0	0.004672	0	0	
EVPLL	645027	broad.mit.edu	37	17	18284812	18284812	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:18284812G>A	uc002gte.2	+	3	450	c.195G>A	c.(193-195)CCG>CCA	p.P65P		NM_001145127	NP_001138599	A8MZ36	EVPLL_HUMAN	envoplakin-like	65	Potential.										0						TCAAGCACCCGCAGGCTGAGG	0.677													4	30					0	0	0.000602	0	0	
ABHD15	116236	broad.mit.edu	37	17	27893668	27893668	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:27893668A>C	uc002hed.1	-	1	381	c.317T>G	c.(316-318)CTG>CGG	p.L106R	TP53I13_uc002hee.2_5'Flank	NM_198147	NP_937790	Q6UXT9	ABH15_HUMAN	abhydrolase domain containing 15 precursor	106						extracellular region	carboxylesterase activity				0						GAGGGTCTGCAGGTGGGGCCC	0.726													5	17					0	0	0.001168	0	0	
CPD	1362	broad.mit.edu	37	17	28783287	28783287	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:28783287G>A	uc002hfb.1	+	16	3366	c.3351G>A	c.(3349-3351)GAG>GAA	p.E1117E	CPD_uc010wbo.1_Silent_p.E870E|CPD_uc010wbp.1_Intron	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1117	Extracellular (Potential).|Carboxypeptidase-like 3.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AAAATAAAGAGACTCTGAAGC	0.368													24	56					0	0	0.002780	0	0	
ATAD5	79915	broad.mit.edu	37	17	29161318	29161318	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:29161318T>G	uc002hfs.1	+	2	565	c.219T>G	c.(217-219)AAT>AAG	p.N73K	ATAD5_uc002hft.1_5'UTR	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	73					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				CACCCACAAATGAGAAGACAC	0.383													9	70					0	0	0.004482	0	0	
TMEM98	26022	broad.mit.edu	37	17	31266499	31266499	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:31266499G>T	uc002hhq.2	+	7	876	c.418G>T	c.(418-420)GAT>TAT	p.D140Y	TMEM98_uc002hhr.2_Missense_Mutation_p.D140Y	NM_015544	NP_056359	Q9Y2Y6	TMM98_HUMAN	transmembrane protein 98	140						endoplasmic reticulum|integral to membrane					0		Ovarian(249;0.182)|Breast(31;0.244)	BRCA - Breast invasive adenocarcinoma(9;0.0769)			GGTCAGGGTGGATGATGTTGT	0.408													15	50					6.49762e-13	7.35539e-13	0.006122	1	0	
LIG3	3980	broad.mit.edu	37	17	33328293	33328293	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:33328293G>T	uc002hik.1	+	17	2457	c.2349G>T	c.(2347-2349)GAG>GAT	p.E783D	LIG3_uc002hij.2_Missense_Mutation_p.E783D	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	783					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CCGTGTGGGAGATCACAGGGG	0.438								Other_BER_factors					10	39					2.80697e-09	3.10578e-09	0.010729	1	0	
RFFL	117584	broad.mit.edu	37	17	33348714	33348714	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:33348714T>C	uc002hin.1	-	3	440	c.267A>G	c.(265-267)CAA>CAG	p.Q89Q	RFFL_uc002hiq.2_Intron|RFFL_uc002him.1_Silent_p.Q89Q|RFFL_uc010cti.1_Silent_p.Q95Q|RFFL_uc002hip.1_Silent_p.Q89Q|RFFL_uc002hio.1_Silent_p.Q89Q	NM_001017368	NP_001017368	Q8WZ73	RFFL_HUMAN	rififylin	89	FYVE-type.				apoptosis	membrane	ligase activity|zinc ion binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CTCGAAACCGTTGGCAGAGAA	0.502													32	78					0	0	0.013726	0	0	
GGNBP2	79893	broad.mit.edu	37	17	34935804	34935804	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:34935804G>A	uc002hnb.2	+	8	1224	c.975G>A	c.(973-975)CAG>CAA	p.Q325Q	GGNBP2_uc002hna.2_Silent_p.Q325Q|GGNBP2_uc002hnc.1_Silent_p.Q154Q	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	325					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		AGACATGGCAGATGCTTTTCT	0.433													47	135					0	0	0.014410	0	0	
SRCIN1	80725	broad.mit.edu	37	17	36717698	36717698	+	Splice_Site	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:36717698C>G	uc002hqd.2	-	7	1925	c.1700_splice	c.e7+1	p.R567_splice	SRCIN1_uc002hqf.1_Splice_Site_p.R439_splice|SRCIN1_uc002hqe.2_Splice_Site_p.R421_splice|SRCIN1_uc002hqg.2_5'Flank	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein						exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						ACGTCCCTCACCTGGTCTCCG	0.677													5	12					0	0	0.000602	0	0	
GRB7	2886	broad.mit.edu	37	17	37899172	37899172	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:37899172G>A	uc002hsr.2	+	4	578	c.328G>A	c.(328-330)GAT>AAT	p.D110N	GRB7_uc002hss.2_Missense_Mutation_p.D110N|GRB7_uc010cwc.2_Missense_Mutation_p.D110N|GRB7_uc002hst.2_Missense_Mutation_p.D110N	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	110	Ras-associating.				blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GTACAGTGAGGATGGGGCCTG	0.597													31	77					0	0	0.013726	0	0	
KRT27	342574	broad.mit.edu	37	17	38938687	38938687	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:38938687G>C	uc002hvg.2	-	1	100	c.59C>G	c.(58-60)TCT>TGT	p.S20C		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	20	Head.|Gly-rich.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				GAGCCTCACAGAGCCAGTGCC	0.582													7	7					0	0	0.003080	0	0	
KRT12	3859	broad.mit.edu	37	17	39019999	39019999	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:39019999C>T	uc002hvk.2	-	4	949	c.925G>A	c.(925-927)GCT>ACT	p.A309T		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	309	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TTCTGCTCAGCGATGGTTTCA	0.552													18	48					0	0	0.006122	0	0	
KRTAP4-8	728224	broad.mit.edu	37	17	39254069	39254069	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:39254069A>T	uc010wfo.1	-	1	307	c.268T>A	c.(268-270)TGC>AGC	p.C90S		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	90	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|14.					keratin filament					0						cTAGGGTGGCAGCAGGTGGGC	0.363													13	50					0	0	0.004007	0	0	
KRT37	8688	broad.mit.edu	37	17	39578678	39578678	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:39578678C>A	uc002hwp.1	-	4	788	c.741G>T	c.(739-741)AAG>AAT	p.K247N	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	247	Rod.|Coil 1B.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				TCCTCAGAATCTTTACTTCCT	0.562													60	113					5.0973e-17	5.8572e-17	0.014410	1	0	
KRT38	8687	broad.mit.edu	37	17	39596900	39596900	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:39596900A>G	uc002hwq.1	-	1	697	c.274T>C	c.(274-276)TGT>CGT	p.C92R		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	92	Head.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				TAGGCCCCACAGATTCCAATG	0.602													28	59					0	0	0.004656	0	0	
KRT36	8689	broad.mit.edu	37	17	39643923	39643923	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:39643923C>G	uc002hwt.2	-	4	766	c.766G>C	c.(766-768)GTG>CTG	p.V256L		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	256	Rod.|Linker 12.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				TTGAGATCCACTGGGGGAGCA	0.517													16	124					0	0	0.003163	0	0	
KCNH4	23415	broad.mit.edu	37	17	40321495	40321495	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:40321495C>T	uc002hzb.2	-	9	1923	c.1590G>A	c.(1588-1590)GAG>GAA	p.E530E		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	530	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TGCAGGCTACCTCGTTGGCGT	0.627													18	51					0	0	0.004990	0	0	
ATP6V0A1	535	broad.mit.edu	37	17	40639384	40639384	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:40639384C>A	uc002hzr.2	+	10	1189	c.1022C>A	c.(1021-1023)ACG>AAG	p.T341K	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.T341K|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.T348K|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.T298K|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.T298K|ATP6V0A1_uc010cyg.2_5'UTR|ATP6V0A1_uc010wgl.1_Missense_Mutation_p.T200K	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	341	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		AGAAGGGGCACGGTGAGTCCC	0.438													8	76					3.09899e-07	3.31138e-07	0.004482	1	0	
CNTNAP1	8506	broad.mit.edu	37	17	40839832	40839832	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:40839832G>A	uc002iay.2	+	8	1355	c.1139G>A	c.(1138-1140)CGT>CAT	p.R380H	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	380	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity	p.R380H(1)		ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		TTCCCACGCCGTGGCCGCCTG	0.637													24	69					0	0	0.003330	0	0	
CNTNAP1	8506	broad.mit.edu	37	17	40840604	40840604	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:40840604G>C	uc002iay.2	+	9	1647	c.1431G>C	c.(1429-1431)CGG>CGC	p.R477R	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	477	Laminin G-like 2.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		TGCTGATCCGGACAGGGACCT	0.547													23	62					0	0	0.014323	0	0	
DHX8	1659	broad.mit.edu	37	17	41584565	41584565	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:41584565G>A	uc002idu.1	+	13	1996	c.1923G>A	c.(1921-1923)GAG>GAA	p.E641E	DHX8_uc010wif.1_Silent_p.E550E|DHX8_uc010wig.1_Silent_p.E641E	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	641	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		TAGGCCAAGAGGTAAGTAGAT	0.458													38	76					0	0	0.004878	0	0	
TRIM25	7706	broad.mit.edu	37	17	54991410	54991410	+	Splice_Site	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:54991410G>C	uc002iut.2	-	1	1	c.-59_splice	c.e1-1		TRIM25_uc010dcj.2_Splice_Site	NM_005082	NP_005073	Q14258	TRI25_HUMAN	tripartite motif-containing 25						innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|response to virus	cell junction|cytosol|nucleus	sequence-specific DNA binding transcription factor activity|ubiquitin-protein ligase activity|zinc ion binding			lung(1)|breast(1)|skin(1)	3	Breast(9;6.15e-08)					CCGAGGAAACGAAACCTAGCT	0.706													6	19					0	0	0.001984	0	0	
SCPEP1	59342	broad.mit.edu	37	17	55062741	55062741	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:55062741C>T	uc002iuv.3	+	3	281	c.228C>T	c.(226-228)GGC>GGT	p.G76G	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Silent_p.G26G	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	76					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					TTCCATAGGGCGGTCCAGGCG	0.428													10	104					0	0	0.008291	0	0	
MTMR4	9110	broad.mit.edu	37	17	56581218	56581218	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:56581218C>T	uc002iwj.2	-	15	1808	c.1698G>A	c.(1696-1698)TGG>TGA	p.W566*		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	566	Myotubularin phosphatase.					cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AAACAGCTGTCCAGAGGTGCA	0.522													29	301					0	0	0.009535	0	0	
TEX14	56155	broad.mit.edu	37	17	56676672	56676672	+	Silent	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:56676672A>G	uc010dcz.1	-	14	2170	c.2052T>C	c.(2050-2052)GAT>GAC	p.D684D	TEX14_uc002iwr.1_Silent_p.D678D|TEX14_uc002iws.1_Silent_p.D678D|TEX14_uc010dda.1_Silent_p.D458D	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	684						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AAGAGCTCTCATCCTCACTGC	0.483													14	171					0	0	0.004007	0	0	
DHX40	79665	broad.mit.edu	37	17	57684433	57684433	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:57684433G>C	uc002ixn.1	+	18	2387	c.2240G>C	c.(2239-2241)AGA>ACA	p.R747T	DHX40_uc010woe.1_Missense_Mutation_p.R670T|DHX40_uc010wof.1_Missense_Mutation_p.R262T	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	747							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					ATGCAAAGAAGAAATGATGAC	0.383													32	125					0	0	0.009535	0	0	
USP32	84669	broad.mit.edu	37	17	58258984	58258984	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:58258984T>C	uc002iyo.1	-	32	4535	c.4249A>G	c.(4249-4251)AAA>GAA	p.K1417E	USP32_uc002iyn.1_Missense_Mutation_p.K1087E	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1417					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			AGTTTATTTTTGCTGCCAATC	0.537													5	71					0	0	0.001168	0	0	
MED13	9969	broad.mit.edu	37	17	60129928	60129928	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:60129928T>C	uc002izo.2	-	3	517	c.440A>G	c.(439-441)TAT>TGT	p.Y147C		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	147					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						ATCTTTTTCATAAGGCTTTAC	0.328													16	175					0	0	0.006122	0	0	
FTSJ3	117246	broad.mit.edu	37	17	61897523	61897523	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:61897523C>G	uc002jbz.2	-	19	2345	c.2267G>C	c.(2266-2268)AGG>ACG	p.R756T	FTSJ3_uc002jca.2_Missense_Mutation_p.R756T	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	756					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						CTGCTCCAGCCTCTTCAGCAT	0.572													36	108					0	0	0.004878	0	0	
SCN4A	6329	broad.mit.edu	37	17	62020205	62020205	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:62020205G>C	uc002jds.1	-	23	4346	c.4269C>G	c.(4267-4269)GTC>GTG	p.V1423V		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1423	Helical; Name=S3 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	ACAGGATGACGACCACGAAGT	0.592													6	45					0	0	0.001168	0	0	
ERN1	2081	broad.mit.edu	37	17	62125323	62125323	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:62125323C>G	uc002jdz.2	-	19	2537	c.2424G>C	c.(2422-2424)TTG>TTC	p.L808F		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	808	Cytoplasmic (Potential).|Protein kinase.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						TCTTCTCTATCAATTCACGTG	0.413													14	38					0	0	0.001855	0	0	
LRRC37A3	374819	broad.mit.edu	37	17	62893266	62893266	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:62893266G>C	uc002jey.2	-	3	641	c.110C>G	c.(109-111)GCT>GGT	p.A37G	LRRC37A3_uc010wqg.1_Intron|LRRC37A3_uc010wqf.1_Intron	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	37	Extracellular (Potential).					integral to membrane					0						CAGAGGCTGAGCCTCCTTGAC	0.627													15	145					0	0	0.014323	0	0	
PITPNC1	26207	broad.mit.edu	37	17	65548449	65548449	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:65548449T>C	uc002jgc.2	+	3	621	c.274T>C	c.(274-276)TAC>CAC	p.Y92H	PITPNC1_uc002jgb.2_Missense_Mutation_p.Y92H	NM_012417	NP_036549	Q9UKF7	PITC1_HUMAN	phosphatidylinositol transfer protein,	92					signal transduction	cytoplasm	lipid binding|phosphatidylinositol transporter activity|protein binding			skin(1)	1	all_cancers(12;3.03e-10)		BRCA - Breast invasive adenocarcinoma(8;2.08e-08)|Colorectal(3;0.198)			CTATTATCCCTACACAATTAC	0.388													54	89					0	0	0.014410	0	0	
MAP2K6	5608	broad.mit.edu	37	17	67519748	67519748	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:67519748A>G	uc002jij.2	+	8	917	c.629A>G	c.(628-630)AAA>AGA	p.K210R		NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	210	Protein kinase.				activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					TCTGTTGCTAAAACAATTGAT	0.448													35	255					0	0	0.013726	0	0	
FBF1	85302	broad.mit.edu	37	17	73921502	73921502	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:73921502C>T	uc002jqc.2	-	12	1126	c.852G>A	c.(850-852)GAG>GAA	p.E284E	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Silent_p.E274E|FBF1_uc002jqd.1_Silent_p.E284E	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	284											0						AGGTGAAGTCCTCGTCACCCC	0.562													23	19					0	0	0.003330	0	0	
DNAH17	8632	broad.mit.edu	37	17	76503864	76503864	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:76503864G>A	uc010wtu.1	-	2	312	c.135C>T	c.(133-135)ACC>ACT	p.T45T						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCATGCTCCAGGTACTGTCCA	0.567													7	9					0	0	0.003080	0	0	
DNAH17	8632	broad.mit.edu	37	17	76557965	76557965	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:76557965A>C	uc002jvv.1	-	8	879	c.773T>G	c.(772-774)CTA>CGA	p.L258R						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			AGCATTGTCTAGCTCAGCGTC	0.597													7	41					0	0	0.003080	0	0	
PYCR1	5831	broad.mit.edu	37	17	79894654	79894654	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:79894654A>C	uc002kcr.1	-	1	315	c.37T>G	c.(37-39)TTT>GTT	p.F13V	PYCR1_uc002kcq.1_Missense_Mutation_p.F13V|PYCR1_uc002kcp.2_Missense_Mutation_p.F13V|PYCR1_uc002kcs.1_Missense_Mutation_p.F13V|PYCR1_uc010wvd.1_Missense_Mutation_p.F40V|PYCR1_uc002kct.1_Missense_Mutation_p.F13V|PYCR1_uc002kcu.1_Missense_Mutation_p.F13V|PYCR1_uc010wve.1_5'Flank	NM_006907	NP_008838	P32322	P5CR1_HUMAN	pyrroline-5-carboxylate reductase 1 isoform 1	13					cellular response to oxidative stress|proline biosynthetic process	mitochondrial matrix	binding|pyrroline-5-carboxylate reductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)		L-Proline(DB00172)|NADH(DB00157)	GCCAGGGCAAAAGCCAGCTGG	0.677													6	10					0	0	0.004482	0	0	
SMCHD1	23347	broad.mit.edu	37	18	2674039	2674039	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:2674039C>G	uc002klm.3	+	5	722	c.533C>G	c.(532-534)CCT>CGT	p.P178R		NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	178					chromosome organization		ATP binding				0						CAAGGAAAACCTGCTGTTGCA	0.343													3	8					0	0	0.004672	0	0	
EPB41L3	23136	broad.mit.edu	37	18	5489161	5489161	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:5489161C>A	uc002kmt.1	-	2	108	c.22G>T	c.(22-24)GAC>TAC	p.D8Y	EPB41L3_uc010wzh.1_Missense_Mutation_p.D8Y|EPB41L3_uc002kmu.1_Missense_Mutation_p.D8Y|EPB41L3_uc010dkq.1_Splice_Site|EPB41L3_uc010dks.1_Missense_Mutation_p.D30Y|EPB41L3_uc002kmv.1_Splice_Site	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	8					cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GATTCCGAGTCTGATCCAGAT	0.473													9	45					1.08611e-07	1.17334e-07	0.010729	1	0	
SPIRE1	56907	broad.mit.edu	37	18	12546865	12546865	+	Silent	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:12546865C>A	uc002kre.2	-	3	458	c.411G>T	c.(409-411)CTG>CTT	p.L137L	SPIRE1_uc002krc.2_RNA|SPIRE1_uc010wzw.1_Silent_p.L17L|SPIRE1_uc010wzx.1_Intron|SPIRE1_uc010wzy.1_Silent_p.L137L	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	137	KIND.					cytoskeleton|perinuclear region of cytoplasm	actin binding				0						AACCATAGTCCAGTGCTTTAT	0.403													16	54					6.31663e-08	6.8672e-08	0.003163	1	0	
NPC1	4864	broad.mit.edu	37	18	21134742	21134742	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:21134742C>T	uc002kum.3	-	9	1807	c.1533G>A	c.(1531-1533)ACG>ACA	p.T511T	NPC1_uc010xaz.1_Silent_p.T312T|NPC1_uc010xba.1_Silent_p.T356T	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	511					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					ACAGAAAGTGCGTGTGGTAAT	0.443													10	25					0	0	0.008291	0	0	
CABYR	26256	broad.mit.edu	37	18	21736146	21736146	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:21736146T>C	uc002kux.2	+	4	833	c.681T>C	c.(679-681)TCT>TCC	p.S227S	CABYR_uc010xbb.1_Silent_p.S129S|CABYR_uc002kuy.2_Intron|CABYR_uc002kuz.2_Intron|CABYR_uc002kva.2_Silent_p.S209S|CABYR_uc002kvb.2_Intron|CABYR_uc002kvc.2_Intron|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	227					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					TTGTGTGTTCTGGAAAGGTGC	0.478													15	44					0	0	0.002450	0	0	
CDH2	1000	broad.mit.edu	37	18	25583075	25583075	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:25583075C>T	uc002kwg.2	-	7	1365	c.906G>A	c.(904-906)GGG>GGA	p.G302G	CDH2_uc010xbn.1_Silent_p.G271G	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	302	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						ACCTCAACATCCCATTGAGGG	0.458													8	50					0	0	0.003080	0	0	
FHOD3	80206	broad.mit.edu	37	18	34192035	34192035	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:34192035G>A	uc002kzt.1	+	9	1031	c.934G>A	c.(934-936)GTG>ATG	p.V312M	FHOD3_uc002kzr.1_Missense_Mutation_p.V312M|FHOD3_uc002kzs.1_Missense_Mutation_p.V312M|FHOD3_uc002kzu.1_Missense_Mutation_p.V137M|FHOD3_uc010dmz.1_Missense_Mutation_p.V65M	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	312	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				CCTGGACTTAGTGGAGCAACT	0.507													10	53					0	0	0.008291	0	0	
RTTN	25914	broad.mit.edu	37	18	67871435	67871435	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr18:67871435G>C	uc002lkp.2	-	3	352	c.284C>G	c.(283-285)TCT>TGT	p.S95C	RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Missense_Mutation_p.S95C	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	95							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				CTCCACATTAGACCGAAGCTT	0.428													10	83					0	0	0.010729	0	0	
LMNB2	84823	broad.mit.edu	37	19	2433911	2433911	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:2433911G>A	uc002lvy.2	-	8	1422	c.1335C>T	c.(1333-1335)GCC>GCT	p.A445A	LMNB2_uc002lwa.1_Silent_p.A465A	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	445	Tail.			LEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVS -> WRWRSPWQRPKRPGHGHGWQRWLPPGPAGLGLGQRH (in Ref. 5; AAA80979).		nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCCTGCTGGGCCAGGTGGA	0.662													11	56					0	0	0.008291	0	0	
FZR1	51343	broad.mit.edu	37	19	3525967	3525967	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:3525967G>C	uc010dtk.2	+	2	205	c.171G>C	c.(169-171)TGG>TGC	p.W57C	FZR1_uc002lxt.2_Missense_Mutation_p.W57C|FZR1_uc002lxv.2_Missense_Mutation_p.W57C	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	57					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCCAACTGGAGCGTGAACT	0.672													7	21					0	0	0.001984	0	0	
UBXN6	80700	broad.mit.edu	37	19	4446345	4446345	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:4446345C>T	uc002man.1	-	9	1082	c.986G>A	c.(985-987)CGG>CAG	p.R329Q	UBXN6_uc010dty.1_Missense_Mutation_p.R233Q|UBXN6_uc002mam.1_Missense_Mutation_p.R276Q	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	329						microtubule organizing center|nucleus	protein binding				0						GCGCAGCCCCCGCTGCTCCTC	0.721													6	6					0	0	0.001168	0	0	
TICAM1	148022	broad.mit.edu	37	19	4818286	4818286	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:4818286G>C	uc002mbi.2	-	2	355	c.104C>G	c.(103-105)CCA>CGA	p.P35R		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	35					apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CTGGCAGCCTGGGCGTGGGGT	0.592													9	49					0	0	0.006214	0	0	
PTPRS	5802	broad.mit.edu	37	19	5244018	5244018	+	Silent	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:5244018C>A	uc002mbv.2	-	11	1698	c.1464G>T	c.(1462-1464)GTG>GTT	p.V488V	PTPRS_uc002mbu.1_Silent_p.V475V|PTPRS_uc010xin.1_Silent_p.V475V|PTPRS_uc002mbw.2_Silent_p.V475V|PTPRS_uc002mbx.2_Silent_p.V479V|PTPRS_uc002mby.2_Silent_p.V475V	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	488	Extracellular (Potential).|Fibronectin type-III 2.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GCAGGCTGCCCACGGTGGTCA	0.672													22	33					6.44725e-10	7.17989e-10	0.014323	1	0	
TNFSF9	8744	broad.mit.edu	37	19	6535071	6535071	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:6535071G>A	uc002mfh.2	+	3	797	c.759G>A	c.(757-759)TCG>TCA	p.S253S		NM_003811	NP_003802	P41273	TNFL9_HUMAN	tumor necrosis factor (ligand) superfamily,	253	Extracellular (Potential).				apoptosis|cell proliferation|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						CACCGAGGTCGGAATAACGTC	0.627													4	18					0	0	0.000602	0	0	
SNAPC2	6618	broad.mit.edu	37	19	7987364	7987364	+	Silent	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:7987364T>G	uc002miw.1	+	5	743	c.720T>G	c.(718-720)CTT>CTG	p.L240L	SNAPC2_uc002mix.1_RNA	NM_003083	NP_003074	Q13487	SNPC2_HUMAN	small nuclear RNA activating complex,	240					snRNA transcription|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						TCATGTCACTTCCAGAGGAGC	0.627													30	65					0	0	0.013726	0	0	
ADAMTS10	81794	broad.mit.edu	37	19	8661972	8661972	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:8661972G>C	uc002mkj.1	-	8	1213	c.939C>G	c.(937-939)AGC>AGG	p.S313R	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	313	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACTTACAGAAGCTGTCCAGGG	0.587													34	107					0	0	0.003271	0	0	
PIN1	5300	broad.mit.edu	37	19	9959825	9959825	+	Missense_Mutation	SNP	G	C	C	rs139473099		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:9959825G>C	uc002mml.1	+	4	464	c.442G>C	c.(442-444)GGG>CGG	p.G148R	PIN1_uc002mmm.1_3'UTR|PIN1_uc002mmn.1_RNA	NM_006221	NP_006212	Q13526	PIN1_HUMAN	protein (peptidyl-prolyl cis/trans isomerase)	148	PpiC.				cell cycle|negative regulation of cell motility|negative regulation of ERK1 and ERK2 cascade|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of type I interferon production|positive regulation of Rho GTPase activity|positive regulation of ubiquitin-protein ligase activity|protein folding|regulation of mitosis|regulation of pathway-restricted SMAD protein phosphorylation	nucleoplasm	GTPase activating protein binding|mitogen-activated protein kinase kinase binding|peptidyl-prolyl cis-trans isomerase activity|phosphoserine binding|phosphothreonine binding			skin(1)	1						GGAGATGAGCGGGCCCGTGTT	0.687													8	13					0	0	0.004482	0	0	
CACNA1A	773	broad.mit.edu	37	19	13397751	13397751	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:13397751G>A	uc010dze.2	-	20	3358	c.3122C>T	c.(3121-3123)TCG>TTG	p.S1041L	CACNA1A_uc010dzc.2_Missense_Mutation_p.S566L|CACNA1A_uc002mwy.3_Missense_Mutation_p.S1040L|CACNA1A_uc010xne.1_Missense_Mutation_p.S569L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1041	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GTTGGGGCCCGACACAGGGAC	0.537													20	55					0	0	0.010504	0	0	
NOTCH3	4854	broad.mit.edu	37	19	15302590	15302590	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:15302590G>A	uc002nan.2	-	5	844	c.768C>T	c.(766-768)AAC>AAT	p.N256N	NOTCH3_uc002nao.1_Silent_p.N256N	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	256	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AGTTATAGGTGTTGACGCCAT	0.617													13	46					0	0	0.013537	0	0	
CYP4F8	11283	broad.mit.edu	37	19	15730504	15730504	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:15730504C>A	uc002nbi.2	+	7	521	c.457C>A	c.(457-459)CCT>ACT	p.P153T	CYP4F8_uc010xoi.1_3'UTR|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	153					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GCTTGTGACGCCTGCCTTCCA	0.507													14	44					1.67942e-08	1.84628e-08	0.006122	1	0	
JAK3	3718	broad.mit.edu	37	19	17952465	17952465	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:17952465G>C	uc002nhn.3	-	7	1068	c.968C>G	c.(967-969)ACA>AGA	p.T323R	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Missense_Mutation_p.T323R|JAK3_uc010xpx.1_Missense_Mutation_p.T323R	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	323	FERM.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						CTGGTTGTCTGTCCTGGTAAC	0.612		2	Mis		acute megakaryocytic leukemia|								7	50					0	0	0.001984	0	0	
UPF1	5976	broad.mit.edu	37	19	18971148	18971148	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:18971148G>C	uc002nkg.2	+	16	2509	c.2234G>C	c.(2233-2235)GGA>GCA	p.G745A	UPF1_uc002nkf.2_Missense_Mutation_p.G734A|UPF1_uc002nkh.2_5'UTR	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	745					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GTGAAGAAGGGATTTGACTTC	0.537													49	153					0	0	0.014410	0	0	
KIAA0355	9710	broad.mit.edu	37	19	34842423	34842423	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:34842423C>G	uc002nvd.3	+	13	3689	c.2830C>G	c.(2830-2832)CAC>GAC	p.H944D		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	944										ovary(1)	1	Esophageal squamous(110;0.162)					TTGCAGGAAACACAGCAGTGG	0.587													7	47					0	0	0.003080	0	0	
RASGRP4	115727	broad.mit.edu	37	19	38912651	38912651	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:38912651A>T	uc002oir.2	-	2	380	c.166T>A	c.(166-168)TGC>AGC	p.C56S	RASGRP4_uc010efz.1_5'Flank|RASGRP4_uc010ega.1_5'Flank|RASGRP4_uc010xua.1_Missense_Mutation_p.C56S|RASGRP4_uc010xub.1_Missense_Mutation_p.C56S|RASGRP4_uc010xuc.1_Missense_Mutation_p.C56S|RASGRP4_uc010xud.1_Missense_Mutation_p.C56S|RASGRP4_uc010xue.1_Missense_Mutation_p.C56S|RASGRP4_uc010egb.2_Missense_Mutation_p.C56S	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	56	N-terminal Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCTTCGCTGCAGCCGCCCTCA	0.562													3	25					0	0	0.004672	0	0	
RYR1	6261	broad.mit.edu	37	19	39068820	39068820	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:39068820G>C	uc002oit.2	+	99	14470	c.14340G>C	c.(14338-14340)AAG>AAC	p.K4780N	RYR1_uc002oiu.2_Missense_Mutation_p.K4775N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4780					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGATCTGGAAGTTCGGGGTCA	0.612													6	18					0	0	0.001168	0	0	
AXL	558	broad.mit.edu	37	19	41726605	41726605	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:41726605C>T	uc010ehj.2	+	2	340	c.150C>T	c.(148-150)CTC>CTT	p.L50L	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.L50L|AXL_uc010ehk.2_Silent_p.L50L	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	50	Extracellular (Potential).|Interaction with GAS6.|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CCCGGGGACTCACGGGCACCC	0.617													7	10					0	0	0.001984	0	0	
ZNF404	342908	broad.mit.edu	37	19	44378005	44378005	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:44378005G>A	uc002oxs.3	-	2	361	c.352C>T	c.(352-354)CAT>TAT	p.H118Y		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TTTCTCTTATGTAGAGGAAGG	0.348													57	166					0	0	0.014410	0	0	
IGFL4	444882	broad.mit.edu	37	19	46543422	46543422	+	Missense_Mutation	SNP	C	G	G	rs147872869	by1000genomes	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:46543422C>G	uc002pdy.1	-	3	377	c.323G>C	c.(322-324)TGT>TCT	p.C108S		NM_001002923	NP_001002923	Q6B9Z1	IGFL4_HUMAN	IGF-like family member 4 precursor	108						extracellular region					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		TACCTGGGCACAGATCCTGGT	0.567													10	125					0	0	0.010729	0	0	
IGFL2	147920	broad.mit.edu	37	19	46664038	46664038	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:46664038C>A	uc010xxv.1	+	3	277	c.241C>A	c.(241-243)CTT>ATT	p.L81I	IGFL2_uc002peb.2_Missense_Mutation_p.L92I	NM_001135113	NP_001128585	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2 isoform b	81						extracellular region	protein binding				0		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		GCTCTGCTGTCTTGATTCCTT	0.527													37	280					1.47197e-15	1.68015e-15	0.007835	1	0	
PPP5C	5536	broad.mit.edu	37	19	46893354	46893354	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:46893354G>A	uc002pem.2	+	12	1462	c.1402G>A	c.(1402-1404)GAC>AAC	p.D468N	PPP5C_uc010xya.1_Missense_Mutation_p.D335N|PPP5C_uc002pen.2_Missense_Mutation_p.D446N	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	468	Catalytic.				mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		CCAGGGCTCTGACCTACGGCC	0.642													19	70					0	0	0.012319	0	0	
GYS1	2997	broad.mit.edu	37	19	49477581	49477581	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:49477581C>G	uc002plp.2	-	12	1679	c.1438G>C	c.(1438-1440)GAG>CAG	p.E480Q	GYS1_uc010xzy.1_Missense_Mutation_p.E113Q|GYS1_uc010emm.2_Missense_Mutation_p.E416Q|GYS1_uc010xzz.1_Missense_Mutation_p.E400Q	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	480					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		GAGAGGAACTCCGGGTGGAAA	0.488													11	21					0	0	0.008291	0	0	
NR1H2	7376	broad.mit.edu	37	19	50883102	50883102	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:50883102C>T	uc010enw.2	+	9	1272	c.996C>T	c.(994-996)GAC>GAT	p.D332D	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Silent_p.D287D|NR1H2_uc002psa.3_Silent_p.D234D	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	331	Ligand-binding (Potential).				negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		TCTTGAAGGACTTCACCTACA	0.478													8	58					0	0	0.006214	0	0	
C19orf75	284369	broad.mit.edu	37	19	51770751	51770751	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:51770751G>A	uc002pwb.1	+	5	916	c.535G>A	c.(535-537)GTA>ATA	p.V179I	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Missense_Mutation_p.V85I	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	179						integral to membrane				ovary(1)|pancreas(1)	2						AGGAAAACCCGTAGTCGCCAC	0.463													35	93					0	0	0.004289	0	0	
ZNF808	388558	broad.mit.edu	37	19	53067359	53067359	+	RNA	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:53067359C>T	uc002pzq.2	+	4		c.3871C>T						Q8N4W9	ZN808_HUMAN	Homo sapiens zinc finger protein 808, mRNA (cDNA clone IMAGE:3542548), complete cds.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		CAGGATTAAGCGGTTTCTGGC	0.428													9	25					0	0	0.004482	0	0	
ZIM2	23619	broad.mit.edu	37	19	57286491	57286491	+	Silent	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr19:57286491A>C	uc002qnr.2	-	11	1531	c.1149T>G	c.(1147-1149)ACT>ACG	p.T383T	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Silent_p.T179T|ZIM2_uc010ygr.1_Silent_p.T179T|ZIM2_uc002qnq.2_Silent_p.T383T|ZIM2_uc010etp.2_Silent_p.T383T|ZIM2_uc010ygs.1_Silent_p.T383T	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	383					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		TGCAGCCAGAAGTCTTCCTAC	0.448													23	62					0	0	0.012319	0	0	
GREB1	9687	broad.mit.edu	37	2	11765369	11765369	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:11765369A>G	uc002rbk.1	+	24	4537	c.4237A>G	c.(4237-4239)ATC>GTC	p.I1413V	GREB1_uc002rbp.1_Missense_Mutation_p.I411V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1413						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CTTTGACTACATCATTCACGA	0.473													9	401					0	0	0.013537	0	0	
APOB	338	broad.mit.edu	37	2	21228333	21228333	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:21228333G>A	uc002red.2	-	26	11535	c.11407C>T	c.(11407-11409)CCA>TCA	p.P3803S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3803					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGTCTTCTGGTTGAGAATAT	0.413													43	123					0	0	0.013114	0	0	
GPR113	165082	broad.mit.edu	37	2	26536310	26536310	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:26536310C>T	uc002rhe.3	-	9	1408	c.1408G>A	c.(1408-1410)GTC>ATC	p.V470I	GPR113_uc010yky.1_Missense_Mutation_p.V401I|GPR113_uc002rhb.1_Missense_Mutation_p.V73I|GPR113_uc010eyk.1_Missense_Mutation_p.V271I|GPR113_uc002rhc.1_Missense_Mutation_p.V73I|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	470	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCCCCAGACTCCGTCAGCC	0.637													3	13					0	0	0.004672	0	0	
VIT	5212	broad.mit.edu	37	2	37041500	37041500	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:37041500A>C	uc002rpl.2	+	16	2299	c.2078A>C	c.(2077-2079)AAC>ACC	p.N693T	VIT_uc002rpm.2_Missense_Mutation_p.N671T|VIT_uc010ezv.2_Missense_Mutation_p.N649T|VIT_uc010ezw.2_Missense_Mutation_p.N650T	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	678						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				CAGCCTCGGAACTGAATTCAG	0.512													20	53					0	0	0.012319	0	0	
FSHR	2492	broad.mit.edu	37	2	49210097	49210097	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:49210097C>T	uc002rww.2	-	8	696	c.622G>A	c.(622-624)GAA>AAA	p.E208K	FSHR_uc002rwx.2_Missense_Mutation_p.E208K|FSHR_uc010fbn.2_Missense_Mutation_p.E182K	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	208	LRR 7.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TTAGGCAATTCTTCTAAATTA	0.398									Gonadal_Dysgenesis_46_XX				3	26					0	0	0.009096	0	0	
RPS27A	6233	broad.mit.edu	37	2	55461288	55461288	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:55461288C>T	uc010yow.1	+	4	334	c.137C>T	c.(136-138)GCT>GTT	p.A46V	C2orf63_uc002ryh.2_5'Flank|C2orf63_uc002ryi.2_5'Flank|C2orf63_uc002ryj.2_5'Flank|RPS27A_uc002ryk.2_Missense_Mutation_p.A46V|RPS27A_uc002ryl.2_RNA|RPS27A_uc002rym.2_RNA	NM_001135592	NP_001129064	P62979	RS27A_HUMAN	ubiquitin and ribosomal protein S27a precursor	46	Ubiquitin-like.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	metal ion binding|structural constituent of ribosome			ovary(1)	1						CTGATCTTTGCTGGCAAGCAG	0.398													31	61					0	0	0.003755	0	0	
CCDC88A	55704	broad.mit.edu	37	2	55615954	55615954	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:55615954T>C	uc002ryv.2	-	3	1075	c.233A>G	c.(232-234)AAT>AGT	p.N78S	CCDC88A_uc010yoz.1_Missense_Mutation_p.N78S|CCDC88A_uc010ypa.1_Missense_Mutation_p.N78S	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	78					activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						AATGGATAGATTGTGCATTCT	0.269													34	84					0	0	0.006999	0	0	
ACTG2	72	broad.mit.edu	37	2	74141874	74141874	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:74141874G>C	uc002sjw.2	+	7	803	c.681G>C	c.(679-681)GAG>GAC	p.E227D	ACTG2_uc010fey.2_Missense_Mutation_p.E227D|ACTG2_uc010yrn.1_Missense_Mutation_p.E184D	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	227					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TTGAGAATGAGATGGCCACAG	0.517													14	53					0	0	0.001855	0	0	
CCDC142	84865	broad.mit.edu	37	2	74702165	74702165	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:74702165G>A	uc002slr.2	-	8	2267	c.1874C>T	c.(1873-1875)TCC>TTC	p.S625F	MRPL53_uc002sln.2_5'Flank|CCDC142_uc002slo.2_RNA|CCDC142_uc002slq.2_Missense_Mutation_p.S618F|CCDC142_uc002slp.2_Missense_Mutation_p.S625F	NM_032779	NP_116168	Q17RM4	CC142_HUMAN	coiled-coil domain containing 142	625										central_nervous_system(1)	1						GAGATCAGGGGACAGGCTCCA	0.597													41	93					0	0	0.009718	0	0	
HTRA2	27429	broad.mit.edu	37	2	74757811	74757811	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:74757811C>A	uc002smi.1	+	2	1176	c.574C>A	c.(574-576)CTC>ATC	p.L192I	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Missense_Mutation_p.L192I|HTRA2_uc002smk.1_Missense_Mutation_p.L192I|HTRA2_uc002sml.1_Missense_Mutation_p.L192I|HTRA2_uc002smm.1_5'UTR|HTRA2_uc002smn.1_5'UTR|HTRA2_uc010ffl.2_5'UTR	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	192	Serine protease.				apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						TGCCGATGGGCTCATTGTCAC	0.597													11	50					1.33987e-11	1.51176e-11	0.008291	1	0	
KCNIP3	30818	broad.mit.edu	37	2	96040133	96040133	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:96040133A>G	uc002sup.2	+	3	386	c.271A>G	c.(271-273)AAG>GAG	p.K91E	KCNIP3_uc002suq.2_Missense_Mutation_p.K65E	NM_013434	NP_038462	Q9Y2W7	CSEN_HUMAN	Kv channel interacting protein 3 isoform 1	91	EF-hand 1; degenerate.				apoptosis|signal transduction|transcription, DNA-dependent	endoplasmic reticulum|Golgi apparatus|nucleus|plasma membrane	calcium ion binding|DNA binding|potassium channel activity|transcription corepressor activity|voltage-gated ion channel activity			breast(2)|ovary(1)	3				READ - Rectum adenocarcinoma(193;0.13)		GTTCACCAAGAAGGAGCTGCA	0.602													11	49					0	0	0.010729	0	0	
VWA3B	200403	broad.mit.edu	37	2	98797602	98797602	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:98797602G>T	uc002syo.2	+	9	1502	c.1238G>T	c.(1237-1239)TGC>TTC	p.C413F	VWA3B_uc010yvh.1_Missense_Mutation_p.C263F|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_5'UTR|VWA3B_uc002sym.2_Missense_Mutation_p.C413F|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.C70F	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	413										ovary(3)|large_intestine(2)|skin(1)	6						CTTGCCGACTGCTCTTTCCGC	0.527													34	97					7.11191e-15	8.07743e-15	0.013726	1	0	
CNGA3	1261	broad.mit.edu	37	2	99012681	99012681	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:99012681A>G	uc002syt.2	+	8	1465	c.1048A>G	c.(1048-1050)AGG>GGG	p.R350G	CNGA3_uc002syu.2_Missense_Mutation_p.R332G|CNGA3_uc010fij.2_Missense_Mutation_p.R354G	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	350					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GCGCCTCTCCAGGAAGTACAT	0.507													15	104					0	0	0.002450	0	0	
SLC9A2	6549	broad.mit.edu	37	2	103281631	103281631	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:103281631G>A	uc002tca.2	+	3	968	c.826G>A	c.(826-828)GCC>ACC	p.A276T		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	276	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TGCAGGAATCGCCAACTTCTT	0.433													17	155					0	0	0.004990	0	0	
POU3F3	5455	broad.mit.edu	37	2	105472909	105472909	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:105472909A>T	uc010ywg.1	+	1	941	c.941A>T	c.(940-942)GAG>GTG	p.E314V		NM_006236	NP_006227	P20264	PO3F3_HUMAN	POU class 3 homeobox 3	314	POU-specific.				metanephric ascending thin limb development|metanephric DCT cell differentiation|metanephric macula densa development|metanephric thick ascending limb development|negative regulation of apoptosis|positive regulation of cell proliferation	nucleus	sequence-specific DNA binding			ovary(1)	1						CACTCGGACGAGGACACGCCG	0.637													5	16					0	0	0.000602	0	0	
MARCO	8685	broad.mit.edu	37	2	119735455	119735455	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:119735455T>A	uc002tln.1	+	8	842	c.710T>A	c.(709-711)ATT>AAT	p.I237N	MARCO_uc010yyf.1_Missense_Mutation_p.I159N	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	237	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGGGTCTCATTGGCCCAAAA	0.592													7	18					0	0	0.003080	0	0	
TMEM177	80775	broad.mit.edu	37	2	120439105	120439105	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:120439105G>T	uc010flg.1	+	2	1149	c.676G>T	c.(676-678)GCC>TCC	p.A226S	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Missense_Mutation_p.A226S|TMEM177_uc002tmd.2_Missense_Mutation_p.A226S|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	226						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					TCTCACTCATGCCGTGGAGTC	0.612													19	57					1.96292e-10	2.20027e-10	0.010504	1	0	
GLI2	2736	broad.mit.edu	37	2	121736059	121736059	+	Missense_Mutation	SNP	G	A	A	rs150170739		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:121736059G>A	uc010flp.2	+	9	1448	c.1418G>A	c.(1417-1419)CGC>CAC	p.R473H	GLI2_uc002tmq.1_Missense_Mutation_p.R145H|GLI2_uc002tmr.1_Missense_Mutation_p.R128H|GLI2_uc002tmt.3_Missense_Mutation_p.R145H|GLI2_uc002tmu.3_Missense_Mutation_p.R128H|GLI2_uc002tmw.1_Missense_Mutation_p.R456H	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	473					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TTTGTGTGCCGCTGGCAGGCC	0.632													58	143					0	0	0.014410	0	0	
GLI2	2736	broad.mit.edu	37	2	121747917	121747917	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:121747917C>G	uc010flp.2	+	13	4457	c.4427C>G	c.(4426-4428)CCA>CGA	p.P1476R	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.P1148R|GLI2_uc002tmu.3_Missense_Mutation_p.P1131R	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1476					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCACCACAGCCACAGGCCTGT	0.637													5	96					0	0	0.001168	0	0	
MYO7B	4648	broad.mit.edu	37	2	128351207	128351207	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:128351207A>T	uc002top.2	+	18	2285	c.2232A>T	c.(2230-2232)AAA>AAT	p.K744N		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	744						apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGAAGACAAAAATTTTCCTGA	0.597													34	87					0	0	0.004289	0	0	
SMPD4	55627	broad.mit.edu	37	2	130918787	130918787	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:130918787G>C	uc002tqq.1	-	11	1560	c.1040C>G	c.(1039-1041)CCC>CGC	p.P347R	SMPD4_uc002tqp.1_Missense_Mutation_p.P40R|SMPD4_uc010yzy.1_Intron|SMPD4_uc010yzz.1_Intron|SMPD4_uc002tqr.1_Intron|SMPD4_uc002tqs.1_Missense_Mutation_p.P215R|SMPD4_uc002tqt.1_Intron|SMPD4_uc010zaa.1_Intron|SMPD4_uc010zab.1_Intron|SMPD4_uc010zac.1_Missense_Mutation_p.P61A|SMPD4_uc010zad.1_Intron	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	308					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	CTGGAGGCTGGGTTGGGCGGG	0.562													12	75					0	0	0.004007	0	0	
THSD7B	80731	broad.mit.edu	37	2	137814637	137814637	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:137814637G>A	uc002tva.1	+	2	694	c.694G>A	c.(694-696)GGA>AGA	p.G232R	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.G122R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TAATCCAAGCGGAAGAACTGT	0.393													49	122					0	0	0.014410	0	0	
PRPF40A	55660	broad.mit.edu	37	2	153526775	153526775	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:153526775G>T	uc002tyh.3	-	15	1622	c.1600C>A	c.(1600-1602)CCA>ACA	p.P534T	PRPF40A_uc002tyg.3_5'Flank|PRPF40A_uc010zcd.1_Missense_Mutation_p.P481T	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	561	FF 3.				mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						GCAAAAGTTGGATTATCCATC	0.368													5	64					1.23904e-05	1.29967e-05	0.000602	1	0	
DPP4	1803	broad.mit.edu	37	2	162873627	162873627	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:162873627T>G	uc002ubz.2	-	17	2020	c.1459A>C	c.(1459-1461)AAT>CAT	p.N487H	DPP4_uc010fpb.2_Missense_Mutation_p.N163H	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	487	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	CCTTTATCATTCACGCTGCTG	0.348													4	36					0	0	0.000602	0	0	
SCN3A	6328	broad.mit.edu	37	2	166012305	166012305	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:166012305C>T	uc002ucx.2	-	10	1632	c.1140G>A	c.(1138-1140)ATG>ATA	p.M380I	SCN3A_uc002ucy.2_Missense_Mutation_p.M380I|SCN3A_uc002ucz.2_Missense_Mutation_p.M380I|SCN3A_uc002uda.1_Missense_Mutation_p.M249I|SCN3A_uc002udb.1_Missense_Mutation_p.M249I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	380						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGTCTTGAGTCATGAGTCGAA	0.393													10	96					0	0	0.008291	0	0	
SCN1A	6323	broad.mit.edu	37	2	166848165	166848165	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:166848165G>A	uc010zcz.1	-	26	5605	c.5587C>T	c.(5587-5589)CGG>TGG	p.R1863W		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1874						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCTAGAACCCGCTTTGTAAAA	0.473													39	105					0	0	0.004878	0	0	
KBTBD10	10324	broad.mit.edu	37	2	170366566	170366566	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:170366566C>G	uc002ueu.1	+	1	355	c.278C>G	c.(277-279)TCT>TGT	p.S93C	KBTBD10_uc010zdh.1_Intron	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	93	BTB.				striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						TACCTGTACTCTGCCAGTATT	0.393													61	115					0	0	0.014410	0	0	
UBR3	130507	broad.mit.edu	37	2	170863659	170863659	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:170863659A>T	uc010zdi.1	+	28	4189	c.4189A>T	c.(4189-4191)AAG>TAG	p.K1397*	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Nonsense_Mutation_p.K218*|UBR3_uc002uft.3_Nonsense_Mutation_p.K250*|UBR3_uc010zdj.1_Nonsense_Mutation_p.K59*	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1397					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						AGATCTCATAAAGGAAGTGGA	0.448													5	22					0	0	0.000602	0	0	
CYBRD1	79901	broad.mit.edu	37	2	172398199	172398199	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:172398199T>A	uc002ugy.3	+	2	488	c.298T>A	c.(298-300)TCT>ACT	p.S100T	CYBRD1_uc002ugz.3_Intron	NM_024843	NP_079119	Q53TN4	CYBR1_HUMAN	cytochrome b reductase 1 isoform 1	100	Cytochrome b561.|Helical; Name=3; (Potential).				cellular iron ion homeostasis|electron transport chain|transmembrane transport	integral to membrane	ferric-chelate reductase activity|metal ion binding				0						TGCAATTATCTCTGTGGTGGC	0.453													20	119					0	0	0.008871	0	0	
TTN	7273	broad.mit.edu	37	2	179414985	179414985	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:179414985T>C	uc010zfg.1	-	286	84100	c.83876A>G	c.(83875-83877)GAG>GGG	p.E27959G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E21654G|TTN_uc010zfi.1_Missense_Mutation_p.E21587G|TTN_uc010zfj.1_Missense_Mutation_p.E21462G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28886							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGGCCAAACTCTACTATTGG	0.353													22	95					0	0	0.012319	0	0	
TTN	7273	broad.mit.edu	37	2	179569607	179569607	+	Silent	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:179569607T>A	uc010zfg.1	-	101	26183	c.25959A>T	c.(25957-25959)ACA>ACT	p.T8653T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.T5314T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9580							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTTACCTCTGTCTGTGACA	0.313													75	146					0	0	0.014410	0	0	
TTN	7273	broad.mit.edu	37	2	179594203	179594203	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:179594203G>A	uc010zfg.1	-	61	15172	c.14948C>T	c.(14947-14949)CCG>CTG	p.P4983L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P1644L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5910							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTCAAACGGAGGTGTTCC	0.443													25	124					0	0	0.004656	0	0	
PPP1R1C	151242	broad.mit.edu	37	2	182850902	182850902	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:182850902C>T	uc002uoo.2	+	1	352	c.65C>T	c.(64-66)CCT>CTT	p.P22L	PPP1R1C_uc002uon.2_Intron|PPP1R1C_uc002uop.1_Missense_Mutation_p.P22L|PPP1R1C_uc010frm.1_Missense_Mutation_p.P22L|PPP1R1C_uc010frn.1_RNA	NM_001080545	NP_001074014	Q8WVI7	PPR1C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	22					signal transduction	cytoplasm	protein phosphatase inhibitor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0628)			CAGATTGCACCTGAAGCAGCA	0.408													16	150					0	0	0.004990	0	0	
DNAJC10	54431	broad.mit.edu	37	2	183623585	183623585	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:183623585G>A	uc002uow.1	+	20	2380	c.1965G>A	c.(1963-1965)AGG>AGA	p.R655R	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Silent_p.R609R|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	655	Thioredoxin 3.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			GTTGGAATAGGGATGCTTATT	0.318													24	91					0	0	0.005443	0	0	
TFPI	7035	broad.mit.edu	37	2	188332507	188332507	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:188332507G>C	uc002upx.2	-	7	814	c.781C>G	c.(781-783)CAA>GAA	p.Q261E	TFPI_uc002upy.2_Missense_Mutation_p.Q261E|TFPI_uc002upz.2_Missense_Mutation_p.Q257E	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	261	BPTI/Kunitz inhibitor 3.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	AGACATTCTTGTTTGGAAGTA	0.343													9	118					0	0	0.010729	0	0	
DNAH7	56171	broad.mit.edu	37	2	196750979	196750979	+	Silent	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:196750979G>T	uc002utj.3	-	34	5525	c.5424C>A	c.(5422-5424)TCC>TCA	p.S1808S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1808					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGTTTGTATCGGAAGTAGGAG	0.323													23	40					0.00047179	0.000488894	0.003330	1	0	
CPO	130749	broad.mit.edu	37	2	207820236	207820236	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:207820236C>A	uc002vby.2	+	3	261	c.215C>A	c.(214-216)ACA>AAA	p.T72K		NM_173077	NP_775100	Q8IVL8	CBPO_HUMAN	carboxypeptidase O precursor	72					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0744)|Epithelial(149;0.0807)|Lung(261;0.142)		GAAGTGGTGACACAGCATTTC	0.458													20	88					2.98393e-07	3.20843e-07	0.002780	1	0	
VWC2L	402117	broad.mit.edu	37	2	215279274	215279274	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:215279274C>T	uc002vet.2	+	2	487	c.357C>T	c.(355-357)CAC>CAT	p.H119H	VWC2L_uc010zjl.1_Silent_p.H119H	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	119	VWFC 2.					extracellular region					0						GTGAATATCACGGGAAAAATT	0.368													7	25					0	0	0.004482	0	0	
ABCA12	26154	broad.mit.edu	37	2	215821416	215821416	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:215821416G>A	uc002vew.2	-	42	6424	c.6204C>T	c.(6202-6204)GGC>GGT	p.G2068G	ABCA12_uc002vev.2_Silent_p.G1750G|ABCA12_uc010zjn.1_Silent_p.G995G	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2068					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GAGATACAGCGCCTAGGTTGT	0.373													17	82					0	0	0.007413	0	0	
ABCA12	26154	broad.mit.edu	37	2	215839501	215839501	+	Splice_Site	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:215839501C>A	uc002vew.2	-	35	5688	c.5468_splice	c.e35+1	p.L1823_splice	ABCA12_uc002vev.2_Splice_Site_p.L1505_splice|ABCA12_uc010zjn.1_Splice_Site_p.L750_splice	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12						cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GAACCACTTACAGATCACTGG	0.333													30	110					4.3181e-19	5.00374e-19	0.013726	1	0	
FN1	2335	broad.mit.edu	37	2	216243985	216243985	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:216243985G>A	uc002vfa.2	-	34	5756	c.5490C>T	c.(5488-5490)AGC>AGT	p.S1830S	FN1_uc002vfb.2_Silent_p.S1649S|FN1_uc002vfc.2_Silent_p.S1649S|FN1_uc002vfd.2_Silent_p.S1830S|FN1_uc002vfe.2_Silent_p.S1739S|FN1_uc002vff.2_Silent_p.S1739S|FN1_uc002vfg.2_Silent_p.S1649S|FN1_uc002vfh.2_Silent_p.S1649S|FN1_uc002vfi.2_Silent_p.S1830S|FN1_uc002vfj.2_Silent_p.S1740S|FN1_uc002vez.2_Silent_p.S24S|FN1_uc010zjp.1_Silent_p.S367S|FN1_uc002vfk.1_5'Flank|FN1_uc010fva.1_5'Flank|FN1_uc010fvb.1_5'Flank|FN1_uc010fvc.1_Silent_p.S192S|FN1_uc010fvd.1_Intron	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCACTGGGCGCTCAGGCTTG	0.512													27	76					0	0	0.006320	0	0	
SPEG	10290	broad.mit.edu	37	2	220357372	220357372	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:220357372T>A	uc010fwg.2	+	41	9668	c.9668T>A	c.(9667-9669)CTG>CAG	p.L3223Q		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	3223					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GACGCCTACCTGATGAAGCTG	0.682													20	92					0	0	0.008871	0	0	
CCDC140	151278	broad.mit.edu	37	2	223168875	223168875	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:223168875T>A	uc002vnb.1	+	2	638	c.254T>A	c.(253-255)CTG>CAG	p.L85Q		NM_153038	NP_694583	Q96MF4	CC140_HUMAN	coiled-coil domain containing 140	85											0		Renal(207;0.0376)		Epithelial(121;4.03e-10)|all cancers(144;1.8e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACCTGGGACTGCAGAGAGGC	0.632													13	25					0	0	0.001855	0	0	
KIAA1486	57624	broad.mit.edu	37	2	226447157	226447157	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:226447157G>A	uc002voe.2	+	4	1199	c.1024G>A	c.(1024-1026)GCC>ACC	p.A342T	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.A112T	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	342	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ATTTCCCCCCGCCCCCGTGCA	0.632													4	18					0	0	0.009096	0	0	
SLC19A3	80704	broad.mit.edu	37	2	228563524	228563524	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:228563524A>G	uc002vpi.2	-	3	996	c.907T>C	c.(907-909)TGG>CGG	p.W303R	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.W299R	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	303	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	TTGTAATCCCACAGGATTTGA	0.443													20	86					0	0	0.010504	0	0	
DNER	92737	broad.mit.edu	37	2	230231600	230231600	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:230231600G>A	uc002vpv.2	-	12	2238	c.2091C>T	c.(2089-2091)ATC>ATT	p.I697I		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	697	Cytoplasmic (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TGGCATGCCGGATGGATGCAA	0.542													19	78					0	0	0.010504	0	0	
ARMC9	80210	broad.mit.edu	37	2	232135733	232135733	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:232135733G>C	uc002vrq.3	+	13	1270	c.1158G>C	c.(1156-1158)GTG>GTC	p.V386V	ARMC9_uc002vrp.3_Silent_p.V386V|ARMC9_uc002vrr.1_RNA	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	386							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		CGAGCGACGTGGTGCGGCAGT	0.498													14	35					0	0	0.002450	0	0	
EFHD1	80303	broad.mit.edu	37	2	233527521	233527521	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:233527521T>C	uc002vtc.2	+	2	520	c.312T>C	c.(310-312)GCT>GCC	p.A104A	EFHD1_uc010fyf.2_Silent_p.A8A|EFHD1_uc002vtd.2_5'UTR	NM_025202	NP_079478	Q9BUP0	EFHD1_HUMAN	EF-hand domain family, member D1	104	1 (Potential).|EF-hand 1.						calcium ion binding|protein binding				0		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Breast(86;0.0199)|Renal(207;0.025)		Epithelial(121;2.08e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00825)|Lung(119;0.0101)		GGTATGACGCTGGGCGGGATG	0.532													10	53					0	0	0.010729	0	0	
ANO7	50636	broad.mit.edu	37	2	242157201	242157201	+	Silent	SNP	C	A	A	rs138830051		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr2:242157201C>A	uc002wax.2	+	20	2338	c.2235C>A	c.(2233-2235)CGC>CGA	p.R745R		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	745	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						TGGACGCGCGCAAGTTCGTCT	0.672													6	16					0.00116845	0.00120173	0.001168	1	0	
IDH3B	3420	broad.mit.edu	37	20	2641184	2641184	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:2641184T>G	uc002wgp.2	-	7	593	c.584A>C	c.(583-585)CAG>CCG	p.Q195P	IDH3B_uc002wgq.2_Missense_Mutation_p.Q195P|IDH3B_uc002wgr.2_Missense_Mutation_p.Q43P|IDH3B_uc010zpz.1_3'UTR	NM_006899	NP_008830	O43837	IDH3B_HUMAN	isocitrate dehydrogenase 3, beta subunit isoform	195					isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	electron carrier activity|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	TGCAATCCGCTGAGACTTGGC	0.522													15	143					0	0	0.008871	0	0	
MCM8	84515	broad.mit.edu	37	20	5958554	5958554	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:5958554T>A	uc002wmi.2	+	13	1805	c.1428T>A	c.(1426-1428)TAT>TAA	p.Y476*	MCM8_uc002wmj.2_Nonsense_Mutation_p.Y460*|MCM8_uc002wmk.2_Nonsense_Mutation_p.Y516*|MCM8_uc002wml.2_Nonsense_Mutation_p.Y476*|MCM8_uc010gbp.2_Nonsense_Mutation_p.Y429*|MCM8_uc002wmm.2_Nonsense_Mutation_p.Y14*	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	476	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						GTGGCGTGTATGTTTGTGGTA	0.408													4	47					0	0	0.009096	0	0	
LRRN4	164312	broad.mit.edu	37	20	6022174	6022174	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:6022174G>A	uc002wmo.2	-	5	1941	c.1717C>T	c.(1717-1719)CTC>TTC	p.L573F		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	573	Extracellular (Potential).					integral to membrane				skin(3)	3						TCCCCGCTGAGGCCGGGGCAC	0.697													12	73					0	0	0.010729	0	0	
PLK1S1	55857	broad.mit.edu	37	20	21224925	21224925	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:21224925T>A	uc002wsb.2	+	13	2056	c.1923T>A	c.(1921-1923)AAT>AAA	p.N641K	PLK1S1_uc010zsh.1_Missense_Mutation_p.N538K|PLK1S1_uc010zsi.1_Missense_Mutation_p.N508K|PLK1S1_uc010zsj.1_RNA|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	641					spindle organization	centrosome	protein kinase binding				0						TAAAATCTAATGGTGAGAGAG	0.333													10	51					0	0	0.010729	0	0	
C20orf185	359710	broad.mit.edu	37	20	31652354	31652354	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:31652354C>T	uc002wym.1	+	7	744	c.744C>T	c.(742-744)AAC>AAT	p.N248N		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	248					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						TGGACATCAACGTGAGTAACC	0.597													5	52					0	0	0.001168	0	0	
ZNF341	84905	broad.mit.edu	37	20	32346586	32346586	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:32346586C>T	uc002wzy.2	+	7	1022	c.1002C>T	c.(1000-1002)AAC>AAT	p.N334N	ZNF341_uc002wzx.2_Silent_p.N327N|ZNF341_uc010geq.2_Silent_p.N244N|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	334	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCACCAAAAACTTTGACCTGC	0.547													14	49					0	0	0.004007	0	0	
CHD6	84181	broad.mit.edu	37	20	40044125	40044125	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:40044125C>T	uc002xka.1	-	34	6818	c.6640G>A	c.(6640-6642)GAG>AAG	p.E2214K	CHD6_uc002xjz.1_5'Flank	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2214					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				ATAGCTGACTCCCCATGCCAG	0.597													12	28					0	0	0.010729	0	0	
SEMG1	6406	broad.mit.edu	37	20	43837255	43837255	+	Silent	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:43837255A>T	uc002xni.2	+	2	1374	c.1317A>T	c.(1315-1317)ATA>ATT	p.I439I	SEMG1_uc002xnj.2_Silent_p.I379I|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Silent_p.I379I	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	439	42 AA repeat 3.				insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				TTGTAATTATAGAGCAGGAAG	0.408													16	133					0	0	0.004990	0	0	
SALL4	57167	broad.mit.edu	37	20	50408838	50408838	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:50408838T>C	uc002xwh.3	-	2	285	c.184A>G	c.(184-186)ACA>GCA	p.T62A	SALL4_uc010gii.2_Missense_Mutation_p.T62A|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	62					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CGCTTTACTGTGGCTTCATCC	0.502													16	89					0	0	0.004007	0	0	
ZBTB46	140685	broad.mit.edu	37	20	62378595	62378595	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:62378595G>A	uc002ygv.1	-	5	1659	c.1458C>T	c.(1456-1458)GCC>GCT	p.A486A	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	486					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CCACGCTGGCGGCGGACATGA	0.557													5	3					0	0	0.000602	0	0	
NPBWR2	2832	broad.mit.edu	37	20	62737475	62737475	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr20:62737475C>T	uc011abt.1	-	1	710	c.710G>A	c.(709-711)CGC>CAC	p.R237H		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	237	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					CCGCAGCCTGCGCAGGAGGTC	0.667													10	20					0	0	0.006214	0	0	
BAGE2	85319	broad.mit.edu	37	21	11097572	11097572	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:11097572C>A	uc002yit.1	-	2	298	c.90G>T	c.(88-90)AGG>AGT	p.R30S	BAGE_uc002yix.2_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		caggctccaacctccagctca	0.09													6	96					1.06961e-07	1.15917e-07	0.003080	1	0	
APP	351	broad.mit.edu	37	21	27394255	27394255	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:27394255C>T	uc002ylz.2	-	6	966	c.766G>A	c.(766-768)GAA>AAA	p.E256K	APP_uc010glk.2_Missense_Mutation_p.E251K|APP_uc002yma.2_Missense_Mutation_p.E256K|APP_uc011ach.1_Missense_Mutation_p.E200K|APP_uc002ymb.2_Missense_Mutation_p.E256K|APP_uc010glj.2_Missense_Mutation_p.E200K|APP_uc011aci.1_Missense_Mutation_p.E221K|APP_uc011acj.1_Missense_Mutation_p.E256K	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	256	Extracellular (Potential).|Asp/Glu-rich (acidic).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				tcagcctcttcctctacctca	0.139													5	25					0	0	0.000602	0	0	
GRIK1	2897	broad.mit.edu	37	21	31015175	31015175	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:31015175C>T	uc002yno.1	-	7	1533	c.1069G>A	c.(1069-1071)GGA>AGA	p.G357R	GRIK1_uc002ynn.2_Missense_Mutation_p.G357R|GRIK1_uc011acs.1_Missense_Mutation_p.G357R|GRIK1_uc011act.1_Missense_Mutation_p.G301R|GRIK1_uc010glq.1_Missense_Mutation_p.G215R|GRIK1_uc002ynr.2_Missense_Mutation_p.G357R	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	357	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AATCTGGGTCCGAGGCGCCAT	0.572													13	41					0	0	0.003163	0	0	
KRTAP26-1	388818	broad.mit.edu	37	21	31691743	31691743	+	Missense_Mutation	SNP	C	T	T	rs146155445		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:31691743C>T	uc002ynw.2	-	1	865	c.611G>A	c.(610-612)CGT>CAT	p.R204H		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	204						intermediate filament				ovary(1)	1						GCAAGATGGACGACACGTGCT	0.488													45	176					0	0	0.010771	0	0	
KRTAP27-1	643812	broad.mit.edu	37	21	31709495	31709495	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:31709495C>T	uc002ynx.1	-	1	518	c.492G>A	c.(490-492)CAG>CAA	p.Q164Q		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	164						intermediate filament				ovary(2)	2						GGTTCTGAGACTGACACTGAC	0.488													39	122					0	0	0.006999	0	0	
CRYZL1	9946	broad.mit.edu	37	21	34962174	34962174	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:34962174G>A	uc011adw.1	-	13	1184	c.1004C>T	c.(1003-1005)GCT>GTT	p.A335V	DONSON_uc002ysn.1_Intron|DONSON_uc002ysj.2_5'Flank|DONSON_uc002ysk.2_5'Flank|DONSON_uc002ysl.2_5'Flank|DONSON_uc010gme.2_5'Flank|DONSON_uc002ysm.2_5'UTR	NM_145858	NP_665857	O95825	QORL1_HUMAN	crystallin, zeta-like 1	335					quinone cofactor metabolic process	cytosol	NADP binding|NADPH:quinone reductase activity|zinc ion binding				0						TTTCTGAACAGCTTCCATGGA	0.363													14	43					0	0	0.007413	0	0	
DSCR3	10311	broad.mit.edu	37	21	38639585	38639585	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:38639585G>A	uc002ywf.1	-	2	250	c.11C>T	c.(10-12)GCC>GTC	p.A4V	DSCR3_uc010gnm.1_RNA|DSCR3_uc010gnn.1_5'UTR|DSCR3_uc010gnl.2_Missense_Mutation_p.A4V|DSCR3_uc011aeg.1_Missense_Mutation_p.A4V|DSCR3_uc011aeh.1_Missense_Mutation_p.A4V	NM_006052	NP_006043	O14972	DSCR3_HUMAN	Down syndrome critical region protein 3	4					vacuolar transport	nucleus|retromer complex					0						GATGTCCAGGGCGGTCCCCAT	0.507													6	50					0	0	0.003080	0	0	
DNMT3L	29947	broad.mit.edu	37	21	45680690	45680690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr21:45680690G>A	uc002zeg.1	-	3	623	c.139C>T	c.(139-141)CGA>TGA	p.R47*	DNMT3L_uc002zeh.1_Nonsense_Mutation_p.R47*	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	47	ADD.				DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		TCTATATTTCGCTGGTTAGCC	0.323													29	55					0	0	0.003271	0	0	
GAB4	128954	broad.mit.edu	37	22	17451031	17451031	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:17451031T>C	uc002zlw.2	-	4	847	c.739A>G	c.(739-741)ACA>GCA	p.T247A	GAB4_uc010gqs.1_Intron	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	247										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				TGCATGGCTGTGTTTCTCCTC	0.552													40	91					0	0	0.007835	0	0	
DGCR2	9993	broad.mit.edu	37	22	19028772	19028772	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:19028772A>T	uc002zoq.1	-	9	1443	c.1195T>A	c.(1195-1197)TTT>ATT	p.F399I	DGCR2_uc002zor.1_Missense_Mutation_p.F175I|DGCR2_uc011agr.1_Missense_Mutation_p.F355I	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	399	Cytoplasmic (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					CCGTAATCAAAGCCAGGGATC	0.612													7	59					0	0	0.001984	0	0	
UFD1L	7353	broad.mit.edu	37	22	19442339	19442339	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:19442339T>C	uc002zpm.2	-	11	912	c.782A>G	c.(781-783)TAT>TGT	p.Y261C	UFD1L_uc002zpo.2_Missense_Mutation_p.Y261C|UFD1L_uc011agy.1_Missense_Mutation_p.Y261C|UFD1L_uc002zpp.2_Missense_Mutation_p.Y214C	NM_005659	NP_005650	Q92890	UFD1_HUMAN	ubiquitin fusion degradation 1-like isoform A	261					skeletal system development|ubiquitin-dependent protein catabolic process	cytosol|nucleus	protein binding|ubiquitin-specific protease activity				0	Colorectal(54;0.0993)					TTTAAATTCATAATTGGGAAT	0.358													6	40					0	0	0.001168	0	0	
SRRD	402055	broad.mit.edu	37	22	26887495	26887495	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:26887495A>T	uc010gve.2	+	7	884	c.877A>T	c.(877-879)ACC>TCC	p.T293S	SRRD_uc003acp.3_Missense_Mutation_p.T286S|uc003acu.1_5'Flank	NM_001013694	NP_001013716	Q9UH36	SRR1L_HUMAN	SRR1 domain containing	293					rhythmic process						0						ATTTAATGATACCTCTGTCCA	0.403													11	74					0	0	0.002450	0	0	
PES1	23481	broad.mit.edu	37	22	30977396	30977396	+	Splice_Site	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:30977396C>G	uc003aij.1	-	8	822	c.748_splice	c.e8-1	p.L250_splice	PES1_uc003aik.1_Splice_Site_p.L250_splice|PES1_uc003ail.1_Splice_Site_p.L233_splice|PES1_uc003aim.1_Splice_Site_p.L250_splice|PES1_uc003ain.1_Splice_Site_p.L111_splice|PES1_uc003aio.1_Splice_Site_p.L111_splice	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain						cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						GACCCTCGAGCTAGTAGGCAA	0.632													6	33					0	0	0.001168	0	0	
PLA2G3	50487	broad.mit.edu	37	22	31531724	31531724	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:31531724C>A	uc003aka.2	-	7	1644	c.1515G>T	c.(1513-1515)AAG>AAT	p.K505N		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	505					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						GGCTCCAGGACTTCTGCTGCC	0.612													34	75					3.33393e-15	3.79913e-15	0.004878	1	0	
PISD	23761	broad.mit.edu	37	22	32058137	32058137	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:32058137G>A	uc003alm.3	-	1	65	c.58C>T	c.(58-60)CGG>TGG	p.R20W	PISD_uc003aln.3_Missense_Mutation_p.R20W	NM_014338	NP_055153	Q9UG56	PISD_HUMAN	phosphatidylserine decarboxylase	20					phospholipid biosynthetic process	mitochondrion	phosphatidylserine decarboxylase activity			central_nervous_system(2)|ovary(1)	3					Phosphatidylserine(DB00144)	TACCTGCTCCGCCACGGCGCG	0.642													24	107					0	0	0.003954	0	0	
YWHAH	7533	broad.mit.edu	37	22	32352156	32352156	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:32352156G>A	uc003alz.2	+	2	359	c.118G>A	c.(118-120)GAA>AAA	p.E40K	YWHAH_uc010gwl.2_5'UTR|YWHAH_uc003ama.2_5'UTR|YWHAH_uc010gwm.2_Missense_Mutation_p.E27K	NM_003405	NP_003396	Q04917	1433F_HUMAN	tyrosine 3-monooxygenase/tryptophan	40					glucocorticoid catabolic process|glucocorticoid receptor signaling pathway|intracellular protein transport|negative regulation of dendrite morphogenesis|positive regulation of transcription, DNA-dependent|regulation of synaptic plasticity	cytoplasm	enzyme binding|glucocorticoid receptor binding|insulin-like growth factor receptor binding|protein domain specific binding			central_nervous_system(1)	1						TCTCTCCAATGAAGATCGAAA	0.448													10	78					0	0	0.008291	0	0	
SLC5A4	6527	broad.mit.edu	37	22	32630885	32630885	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:32630885G>T	uc003ami.2	-	8	862	c.860C>A	c.(859-861)GCT>GAT	p.A287D		NM_014227	NP_055042	Q9NY91	SC5A4_HUMAN	solute carrier family 5 (low affinity glucose	287	Helical; (Potential).				carbohydrate transport|sodium ion transport	integral to membrane	symporter activity				0						GTACCACAAAGCTGTAATGGG	0.363													37	150					2.2871e-25	2.68196e-25	0.007835	1	0	
APOL5	80831	broad.mit.edu	37	22	36122594	36122594	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:36122594C>G	uc003aof.2	+	3	479	c.479C>G	c.(478-480)CCT>CGT	p.P160R		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	160					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GCCCTAGCACCTGTGACAGCA	0.542													30	80					0	0	0.010818	0	0	
APOL1	8542	broad.mit.edu	37	22	36661728	36661728	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:36661728C>T	uc003apf.2	+	6	1014	c.846C>T	c.(844-846)GAC>GAT	p.D282D	APOL1_uc011amn.1_Silent_p.D159D|APOL1_uc003apc.2_RNA|APOL1_uc003ape.2_Silent_p.D298D|APOL1_uc011amo.1_Silent_p.D159D|APOL1_uc011amp.1_Silent_p.D282D|APOL1_uc011amq.1_Silent_p.D264D|APOL1_uc010gwx.2_Silent_p.D159D	NM_003661	NP_003652	O14791	APOL1_HUMAN	apolipoprotein L1 isoform a precursor	282					cholesterol metabolic process|cytolysis|innate immune response|killing of cells of other organism|lipid transport|lipoprotein metabolic process	high-density lipoprotein particle|very-low-density lipoprotein particle	chloride channel activity|lipid binding|protein binding			breast(2)|ovary(1)	3						TTGGGAAGGACATCCGTGCCC	0.527													12	71					0	0	0.010729	0	0	
KCTD17	79734	broad.mit.edu	37	22	37458585	37458585	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:37458585C>G	uc010gxb.2	+	9	918	c.896C>G	c.(895-897)CCC>CGC	p.P299R	KCTD17_uc011amv.1_Missense_Mutation_p.P282R|KCTD17_uc010gxc.2_3'UTR	NM_024681	NP_078957	Q8N5Z5	KCD17_HUMAN	potassium channel tetramerisation domain	306	Pro-rich.					voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0						CCAGAGGCACCCGGATGTGAG	0.348													5	16					0	0	0.001984	0	0	
FAM109B	150368	broad.mit.edu	37	22	42473397	42473397	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:42473397C>A	uc003bbz.2	+	3	287	c.100C>A	c.(100-102)CCG>ACG	p.P34T	C22orf32_uc003bca.2_5'Flank	NM_001002034	NP_001002034	Q6ICB4	SESQ2_HUMAN	hypothetical protein LOC150368	34	PH.				endosome organization|receptor recycling|retrograde transport, endosome to Golgi	clathrin-coated vesicle|early endosome|recycling endosome|trans-Golgi network	protein homodimerization activity				0						AGGGACCCCACCGACCCCCAG	0.642													15	92					1.99824e-07	2.15195e-07	0.004990	1	0	
EFCAB6	64800	broad.mit.edu	37	22	43924769	43924769	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:43924769G>C	uc003bdy.1	-	32	4685	c.4470C>G	c.(4468-4470)ATC>ATG	p.I1490M	EFCAB6_uc003bdz.1_Missense_Mutation_p.I1338M|EFCAB6_uc010gzi.1_Missense_Mutation_p.I1338M	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1490	Interaction with AR.|Interaction with PARK7.|EF-hand 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CGTTGTAGGAGATTTTTGAAG	0.502													59	120					0	0	0.014410	0	0	
PANX2	56666	broad.mit.edu	37	22	50616220	50616220	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr22:50616220C>T	uc003bjn.3	+	2	1079	c.1079C>T	c.(1078-1080)TCG>TTG	p.S360L	PANX2_uc003bjp.3_Missense_Mutation_p.S226L|PANX2_uc003bjo.3_Missense_Mutation_p.S360L	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	360	Cytoplasmic (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		CACATCAAGTCGCTCAACCGG	0.627													7	29					0	0	0.001984	0	0	
CNTN4	152330	broad.mit.edu	37	3	2924862	2924862	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:2924862T>A	uc003bpc.2	+	8	907	c.686T>A	c.(685-687)GTG>GAG	p.V229E	CNTN4_uc003bpb.1_Intron|CNTN4_uc003bpd.1_Missense_Mutation_p.V229E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	229	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAAATAGAAGTGCAGTTCCCA	0.393													4	25					0	0	0.009096	0	0	
HRH1	3269	broad.mit.edu	37	3	11301940	11301940	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:11301940A>T	uc010hdr.2	+	2	1559	c.1217A>T	c.(1216-1218)CAC>CTC	p.H406L	HRH1_uc010hds.2_Missense_Mutation_p.H406L|HRH1_uc010hdt.2_Missense_Mutation_p.H406L|HRH1_uc003bwb.3_Missense_Mutation_p.H406L	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	406	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TCTGGGTTGCACATGAACCGC	0.478													20	116					0	0	0.010504	0	0	
IQSEC1	9922	broad.mit.edu	37	3	12977448	12977448	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:12977448C>T	uc003bxt.2	-	3	1119	c.1110G>A	c.(1108-1110)CAG>CAA	p.Q370Q	IQSEC1_uc003bxu.3_Silent_p.Q248Q|IQSEC1_uc011auw.1_Silent_p.Q356Q	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	370					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CCCGCAGCCGCTGCTCCTGCC	0.687													7	25					0	0	0.004482	0	0	
RBMS3	27303	broad.mit.edu	37	3	29323137	29323137	+	Translation_Start_Site	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:29323137C>G	uc003cel.2	+	1	195	c.-35C>G	c.(-37--33)ATCCA>ATGCA		RBMS3_uc003cek.2_Translation_Start_Site|RBMS3_uc010hfq.2_Translation_Start_Site|RBMS3_uc003cem.2_Translation_Start_Site|RBMS3_uc010hfr.2_Translation_Start_Site	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting							cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				ACCCTGTCATCCAGTTCCCTG	0.512													14	26					0	0	0.001855	0	0	
CNOT10	25904	broad.mit.edu	37	3	32804301	32804301	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:32804301C>G	uc003cfc.1	+	15	2041	c.1786C>G	c.(1786-1788)CCG>GCG	p.P596A	CNOT10_uc011axi.1_Missense_Mutation_p.P368A|CNOT10_uc003cfd.1_Missense_Mutation_p.P595A|CNOT10_uc003cfe.1_Missense_Mutation_p.P569A|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.P656A|CNOT10_uc010hfw.1_Missense_Mutation_p.P291A	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	596					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						TCACTTGAACCCGGAGAATGT	0.413													19	33					0	0	0.007413	0	0	
ZNF445	353274	broad.mit.edu	37	3	44496716	44496716	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:44496716C>G	uc003cnf.2	-	3	674	c.326G>C	c.(325-327)GGG>GCG	p.G109A	ZNF445_uc011azv.1_Missense_Mutation_p.G109A|ZNF445_uc011azw.1_Missense_Mutation_p.G109A	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	109	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		CCGGAGCTCCCCAGGCAGGAT	0.612													16	46					0	0	0.003163	0	0	
GPX1	2876	broad.mit.edu	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:49395482G>C	uc011bcl.1	-	2	310	c.230C>G	c.(229-231)CCG>CGG	p.P77R	GPX1_uc011bcm.1_Missense_Mutation_p.P77R	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	77					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	CTGGTTGCACGGGAAGCCGAG	0.617													4	21					0	0	0.009096	0	0	
GLYCTK	132158	broad.mit.edu	37	3	52325000	52325000	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:52325000C>T	uc003ddo.2	+	3	498	c.402C>T	c.(400-402)AGC>AGT	p.S134S	GLYCTK_uc003ddq.2_Silent_p.S134S|GLYCTK_uc003ddm.2_RNA|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Silent_p.S134S|GLYCTK_uc003ddr.2_5'Flank	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	134					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		AGCCACATAGCCGTGTCCAGG	0.612													3	67					0	0	0.009096	0	0	
HESX1	8820	broad.mit.edu	37	3	57233803	57233803	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:57233803G>A	uc003din.3	-	1	478	c.144C>T	c.(142-144)ACC>ACT	p.T48T		NM_003865	NP_003856	Q9UBX0	HESX1_HUMAN	HESX homeobox 1	48						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0109)|Kidney(284;0.0126)		ATGAGCTGCAGGTGTCTGCCC	0.403													29	43					0	0	0.012213	0	0	
CADPS	8618	broad.mit.edu	37	3	62751640	62751640	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:62751640T>G	uc003dll.2	-	2	821	c.461A>C	c.(460-462)CAG>CCG	p.Q154P	CADPS_uc003dlm.2_Missense_Mutation_p.Q154P|CADPS_uc003dln.2_Missense_Mutation_p.Q154P	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	154					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CTTGACTGTCTGCAGCTGCTG	0.463													14	106					0	0	0.004007	0	0	
ROBO1	6091	broad.mit.edu	37	3	78795966	78795966	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:78795966C>A	uc003dqe.2	-	5	792	c.584G>T	c.(583-585)CGA>CTA	p.R195L	ROBO1_uc003dqb.2_Missense_Mutation_p.R156L|ROBO1_uc003dqc.2_Missense_Mutation_p.R156L|ROBO1_uc003dqd.2_Missense_Mutation_p.R156L	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	195	Extracellular (Potential).|Ig-like C2-type 2.				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		AGGATGGCCTCGTGGAGGTTG	0.453													28	79					1.42536e-11	1.60557e-11	0.004656	1	0	
GABRR3	200959	broad.mit.edu	37	3	97711779	97711779	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:97711779C>G	uc011bgr.1	-	8	1021	c.1021G>C	c.(1021-1023)GTG>CTG	p.V341L		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	341	Helical; (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GACAGGAACACAAAGAGGGAG	0.522													54	151					0	0	0.014410	0	0	
LNP1	348801	broad.mit.edu	37	3	100148706	100148706	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:100148706A>G	uc003dtx.3	+	2	1413	c.133A>G	c.(133-135)AGG>GGG	p.R45G	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	45											0						CACCAGTCACAGGAAAACCTC	0.547													18	174					0	0	0.006122	0	0	
ABI3BP	25890	broad.mit.edu	37	3	100645191	100645191	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:100645191A>C	uc003dun.2	-	2	320	c.235T>G	c.(235-237)TAC>GAC	p.Y79D	ABI3BP_uc003duo.2_Missense_Mutation_p.Y72D|ABI3BP_uc003dup.3_Missense_Mutation_p.Y72D	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	79						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						AGAGGGAAGTACTGGTTTGGT	0.493													7	85					0	0	0.001984	0	0	
PHLDB2	90102	broad.mit.edu	37	3	111693337	111693337	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:111693337C>T	uc010hqa.2	+	18	4100	c.3689C>T	c.(3688-3690)TCG>TTG	p.S1230L	PHLDB2_uc003dyc.2_Missense_Mutation_p.S1214L|PHLDB2_uc003dyd.2_Missense_Mutation_p.S1187L|PHLDB2_uc003dyg.2_Missense_Mutation_p.S1230L|PHLDB2_uc003dyh.2_Missense_Mutation_p.S1187L|PHLDB2_uc003dyi.2_Missense_Mutation_p.S721L|PHLDB2_uc003dyj.2_Missense_Mutation_p.S285L	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	1230	PH.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GTAGCCCCATCGCCAGAAGCC	0.423													46	116					0	0	0.011902	0	0	
CCDC80	151887	broad.mit.edu	37	3	112349073	112349073	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:112349073T>C	uc003dzf.2	-	3	2140	c.1922A>G	c.(1921-1923)CAA>CGA	p.Q641R	CCDC80_uc011bhv.1_Missense_Mutation_p.Q641R|CCDC80_uc003dzg.2_Missense_Mutation_p.Q641R|CCDC80_uc003dzh.1_Missense_Mutation_p.Q641R	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	641										ovary(2)	2						TTCATCACGTTGTTGCACATA	0.433													22	88					0	0	0.002780	0	0	
KIAA2018	205717	broad.mit.edu	37	3	113378877	113378877	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:113378877T>A	uc003eam.2	-	7	2063	c.1652A>T	c.(1651-1653)AAT>ATT	p.N551I	KIAA2018_uc003eal.2_Missense_Mutation_p.N495I	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	551					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						AATTATAACATTTTGATTAGT	0.443													32	100					0	0	0.010818	0	0	
HGD	3081	broad.mit.edu	37	3	120365162	120365162	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:120365162A>C	uc003edw.2	-	9	971	c.601T>G	c.(601-603)TTG>GTG	p.L201V	HGD_uc003edv.2_Missense_Mutation_p.L60V	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	201					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TAGACCTCCAAGATGTAGCCC	0.478													24	112					0	0	0.003954	0	0	
STXBP5L	9515	broad.mit.edu	37	3	120976161	120976161	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:120976161G>T	uc003eec.3	+	17	1953	c.1813G>T	c.(1813-1815)GAC>TAC	p.D605Y	STXBP5L_uc011bji.1_Missense_Mutation_p.D605Y	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	605	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGTAACAAAGGACAGTATTCC	0.368													20	61					4.63292e-17	5.33253e-17	0.008871	1	0	
KALRN	8997	broad.mit.edu	37	3	124180761	124180761	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:124180761G>C	uc003ehg.2	+	24	4000	c.3873G>C	c.(3871-3873)CAG>CAC	p.Q1291H	KALRN_uc010hrv.1_Missense_Mutation_p.Q1282H|KALRN_uc003ehf.1_Missense_Mutation_p.Q1291H|KALRN_uc011bjy.1_Missense_Mutation_p.Q1282H|KALRN_uc003ehh.1_Missense_Mutation_p.Q637H	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1291	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AACTACTCCAGACAGAGAAGG	0.413													24	68					0	0	0.006320	0	0	
CNBP	7555	broad.mit.edu	37	3	128890519	128890519	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:128890519C>A	uc003elq.3	-	2	288	c.82G>T	c.(82-84)GGA>TGA	p.G28*	CNBP_uc003elr.3_Nonsense_Mutation_p.G28*|CNBP_uc011bku.1_Nonsense_Mutation_p.G28*	NM_003418	NP_003409	P62633	CNBP_HUMAN	zinc finger protein 9 isoform 3	28					cholesterol biosynthetic process	endoplasmic reticulum	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTTCTCATTCCACGACCACGG	0.488													3	41					1.23904e-05	1.29967e-05	0.000602	1	0	
MSL2	55167	broad.mit.edu	37	3	135871472	135871472	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:135871472C>A	uc003eqx.1	-	2	984	c.251G>T	c.(250-252)TGC>TTC	p.C84F	MSL2_uc011bmb.1_Missense_Mutation_p.C10F	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	84	RING-type.				histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						ATAGTCTTTGCACCAGCTACA	0.423													98	108					4.10057e-40	4.84164e-40	0.014410	1	0	
PPM1L	151742	broad.mit.edu	37	3	160783228	160783228	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:160783228C>G	uc003fdr.2	+	3	713	c.612C>G	c.(610-612)GAC>GAG	p.D204E	PPM1L_uc003fds.2_Missense_Mutation_p.D25E|PPM1L_uc003fdt.2_Missense_Mutation_p.D77E|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	204	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			CAGATAAAGACCTCACTGTGG	0.498													62	65					0	0	0.014410	0	0	
MIR551B	693136	broad.mit.edu	37	3	168269696	168269696	+	RNA	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:168269696G>A	hsa-mir-551b|MI0003575	+			c.55G>A																				0						GGTGCAGAACGGGAAGGCGAC	0.463													5	116					0	0	0.001984	0	0	
TNIK	23043	broad.mit.edu	37	3	170929005	170929005	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:170929005T>A	uc003fhh.2	-	4	551	c.206A>T	c.(205-207)GAA>GTA	p.E69V	TNIK_uc003fhi.2_Missense_Mutation_p.E69V|TNIK_uc003fhj.2_Missense_Mutation_p.E69V|TNIK_uc003fhk.2_Missense_Mutation_p.E69V|TNIK_uc003fhl.2_Missense_Mutation_p.E69V|TNIK_uc003fhm.2_Missense_Mutation_p.E69V|TNIK_uc003fhn.2_Missense_Mutation_p.E69V|TNIK_uc003fho.2_Missense_Mutation_p.E69V	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	69	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CATGTTAATTTCTTGTTTGAT	0.348													24	179					0	0	0.004656	0	0	
ZNF639	51193	broad.mit.edu	37	3	179052209	179052209	+	Nonstop_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:179052209G>C	uc003fjq.1	+	6	1800	c.1457G>C	c.(1456-1458)TGA>TCA	p.*486S	ZNF639_uc003fjr.1_Nonstop_Mutation_p.*486S	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639	486					initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			GAGACAACTTGATTATTCTCT	0.318													21	48					0	0	0.010504	0	0	
ATP13A5	344905	broad.mit.edu	37	3	193052762	193052762	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:193052762T>C	uc011bsq.1	-	10	1070	c.1070A>G	c.(1069-1071)AAG>AGG	p.K357R		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	357				K -> E (in Ref. 2; BAC85490).	ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		CCCAGAGGGCTTGACCTGGAT	0.468													65	126					0	0	0.014410	0	0	
ACAP2	23527	broad.mit.edu	37	3	195016595	195016595	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:195016595G>A	uc003fun.3	-	17	1755	c.1514C>T	c.(1513-1515)GCA>GTA	p.A505V		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	505	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CACATATTTTGCTCTGATATA	0.353													5	64					0	0	0.001168	0	0	
MUC4	4585	broad.mit.edu	37	3	195515615	195515615	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:195515615C>G	uc011bto.1	-	2	3296	c.2836G>C	c.(2836-2838)GGG>CGG	p.G946R	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.G828R	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	951	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GATGTAAGCCCAGTGGATGTG	0.567													5	75					0	0	0.006214	0	0	
PCYT1A	5130	broad.mit.edu	37	3	195965617	195965617	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:195965617G>C	uc003fwg.2	-	10	1219	c.1046C>G	c.(1045-1047)GCA>GGA	p.A349G	uc003fwf.1_5'Flank|PCYT1A_uc003fwh.2_Missense_Mutation_p.A349G	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	349						cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	GGAGAGATTTGCTGGGGAGCA	0.577													10	192					0	0	0.006214	0	0	
MFI2	4241	broad.mit.edu	37	3	196748317	196748317	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr3:196748317C>T	uc003fxk.3	-	6	783	c.670G>A	c.(670-672)GTG>ATG	p.V224M	MFI2_uc003fxl.3_Missense_Mutation_p.V224M|MFI2_uc011bua.1_Silent_p.T196T	NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	224	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		ACAAAAGCCACGTCCCCTGCC	0.672													27	68					0	0	0.009535	0	0	
EVC2	132884	broad.mit.edu	37	4	5567010	5567010	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:5567010G>A	uc003gij.2	-	21	3688	c.3634C>T	c.(3634-3636)CTG>TTG	p.L1212L	EVC2_uc011bwb.1_Silent_p.L652L|EVC2_uc003gik.2_Silent_p.L1132L	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1212						integral to membrane				large_intestine(3)|ovary(2)	5						CGGGCCCACAGCATCTTTTCT	0.562													16	89					0	0	0.004007	0	0	
TBC1D1	23216	broad.mit.edu	37	4	38138770	38138770	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:38138770G>C	uc003gtb.2	+	20	3664	c.3321G>C	c.(3319-3321)AGG>AGC	p.R1107S	TBC1D1_uc011byd.1_Missense_Mutation_p.R1098S|TBC1D1_uc010ifd.2_Missense_Mutation_p.R894S|TBC1D1_uc003gtd.2_Missense_Mutation_p.R119S	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	1107						nucleus	Rab GTPase activator activity			ovary(1)	1						CAAATGGTAGGATCCAAAGCC	0.532													28	60					0	0	0.007291	0	0	
ATP10D	57205	broad.mit.edu	37	4	47565665	47565665	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:47565665G>A	uc003gxk.1	+	15	2900	c.2736G>A	c.(2734-2736)GCG>GCA	p.A912A	ATP10D_uc003gxl.1_Silent_p.A160A	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	912	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TTCACAAAGCGGGCATCAAGA	0.463													13	38					0	0	0.002450	0	0	
PPEF2	5470	broad.mit.edu	37	4	76813023	76813023	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:76813023C>T	uc003hix.2	-	3	521	c.164G>A	c.(163-165)GGG>GAG	p.G55E	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.G55E	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	55					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GTCTTGCTGCCCAGCATATTC	0.602													10	68					0	0	0.008291	0	0	
WDFY3	23001	broad.mit.edu	37	4	85750257	85750257	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:85750257G>C	uc003hpd.2	-	9	1264	c.856C>G	c.(856-858)CTT>GTT	p.L286V	WDFY3_uc003hpf.2_Missense_Mutation_p.L286V	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	286						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AAACAAGAAAGCCCAGCAAAC	0.383													5	83					0	0	0.001168	0	0	
PTPN13	5783	broad.mit.edu	37	4	87696333	87696333	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:87696333A>G	uc003hpz.2	+	34	5998	c.5518A>G	c.(5518-5520)ACA>GCA	p.T1840A	PTPN13_uc003hpy.2_Missense_Mutation_p.T1845A|PTPN13_uc003hqa.2_Missense_Mutation_p.T1821A|PTPN13_uc003hqb.2_Missense_Mutation_p.T1649A|PTPN13_uc003hqc.1_Missense_Mutation_p.T206A	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1840	PDZ 4.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GGTTAATGATACAGATGTTAC	0.353													3	19					0	0	0.004672	0	0	
MMRN1	22915	broad.mit.edu	37	4	90848951	90848951	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:90848951A>T	uc003hst.2	+	5	1032	c.961A>T	c.(961-963)ATG>TTG	p.M321L	MMRN1_uc010iku.2_Missense_Mutation_p.M287L|MMRN1_uc011cds.1_Missense_Mutation_p.M63L	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	321					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TGCAGAAGTGATGCAAAAAAT	0.244													19	94					0	0	0.010504	0	0	
GRID2	2895	broad.mit.edu	37	4	94690491	94690491	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:94690491T>A	uc011cdt.1	+	15	2749	c.2491T>A	c.(2491-2493)TTT>ATT	p.F831I	GRID2_uc011cdu.1_Missense_Mutation_p.F736I	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	831	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CATAAAGAGCTTTGCAGGGGT	0.537													11	77					0	0	0.010729	0	0	
UNC5C	8633	broad.mit.edu	37	4	96123976	96123976	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:96123976C>T	uc003htp.1	-	12	2196	c.2042G>A	c.(2041-2043)CGC>CAC	p.R681H	UNC5C_uc010ilc.1_Missense_Mutation_p.R700H	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	681	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CAGCTTGAGGCGCTTCGCAGC	0.582													9	72					0	0	0.004482	0	0	
EGF	1950	broad.mit.edu	37	4	110897291	110897291	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:110897291C>A	uc003hzy.3	+	13	2405	c.1953C>A	c.(1951-1953)TTC>TTA	p.F651L	EGF_uc011cfu.1_Missense_Mutation_p.F609L|EGF_uc011cfv.1_Missense_Mutation_p.F651L	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	651	Extracellular (Potential).|LDL-receptor class B 8.				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	CGATTGACTTCTTAACTGACA	0.463													34	83					4.3181e-19	5.00374e-19	0.013726	1	0	
ANK2	287	broad.mit.edu	37	4	114275081	114275081	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:114275081A>T	uc003ibe.3	+	38	5407	c.5307A>T	c.(5305-5307)AAA>AAT	p.K1769N	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.K1784N	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1736					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TAAAGGACAAAGTAAAGGCCC	0.493													106	240					0	0	0.014410	0	0	
UGT8	7368	broad.mit.edu	37	4	115597140	115597140	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:115597140T>A	uc003ibs.2	+	6	1844	c.1322T>A	c.(1321-1323)GTC>GAC	p.V441D	UGT8_uc003ibt.2_Missense_Mutation_p.V441D|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	441					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		GGTCACCCTGTCAATCGAACT	0.428													17	67					0	0	0.004990	0	0	
TRAM1L1	133022	broad.mit.edu	37	4	118006297	118006297	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:118006297A>C	uc003ibv.3	-	1	440	c.253T>G	c.(253-255)TTC>GTC	p.F85V		NM_152402	NP_689615	Q8N609	TR1L1_HUMAN	translocation associated membrane protein 1-like	85	Helical; (Potential).				protein transport|transmembrane transport	endoplasmic reticulum membrane|integral to membrane				central_nervous_system(1)	1						AGCATGTAGAAGAAAACCGTG	0.428													5	34					0	0	0.001984	0	0	
PRDM5	11107	broad.mit.edu	37	4	121774656	121774656	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:121774656C>A	uc003idn.2	-	3	467	c.217G>T	c.(217-219)GCT>TCT	p.A73S	PRDM5_uc003ido.2_Missense_Mutation_p.A73S|PRDM5_uc010ine.2_Missense_Mutation_p.A73S|PRDM5_uc010inf.2_Missense_Mutation_p.A73S|PRDM5_uc003idp.1_Missense_Mutation_p.A73S	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	73	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						GGGTTGGTAGCATCCAAAATG	0.448													37	320					2.04263e-09	2.26739e-09	0.004289	1	0	
INTU	27152	broad.mit.edu	37	4	128628051	128628051	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:128628051C>T	uc003ifk.1	+	12	2268	c.2198C>T	c.(2197-2199)ACA>ATA	p.T733I	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	733										ovary(1)	1						CCCCATACTACACCGGATGCA	0.458													43	178					0	0	0.011902	0	0	
C4orf33	132321	broad.mit.edu	37	4	130030807	130030807	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:130030807G>C	uc003igu.3	+	5	838	c.474G>C	c.(472-474)CAG>CAC	p.Q158H	C4orf33_uc010ioc.1_Missense_Mutation_p.Q158H|C4orf33_uc010iod.2_Missense_Mutation_p.Q158H	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	158										upper_aerodigestive_tract(1)	1						ATGAACTGCAGCAAGGACAAA	0.338													7	49					0	0	0.003080	0	0	
HHIP	64399	broad.mit.edu	37	4	145655992	145655992	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:145655992G>A	uc003ijs.1	+	12	2515	c.1860G>A	c.(1858-1860)ACG>ACA	p.T620T		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	620	EGF-like 1.					cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		GCACCCCCACGGGAAAGTGCT	0.537													9	38					0	0	0.006214	0	0	
DCHS2	54798	broad.mit.edu	37	4	155237055	155237055	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:155237055G>A	uc003inw.2	-	15	3740	c.3740C>T	c.(3739-3741)CCA>CTA	p.P1247L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1247	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGAAAGTGCTGGTGTGCCATC	0.408													5	55					0	0	0.000602	0	0	
DCHS2	54798	broad.mit.edu	37	4	155241793	155241793	+	Silent	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:155241793T>A	uc003inw.2	-	14	3393	c.3393A>T	c.(3391-3393)ACA>ACT	p.T1131T		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1131	Cadherin 9.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ATGCTGTTACTGTCAGGATGA	0.478													93	194					0	0	0.014410	0	0	
NEK1	4750	broad.mit.edu	37	4	170508717	170508717	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:170508717T>A	uc003isb.1	-	8	1091	c.599A>T	c.(598-600)AAA>ATA	p.K200I	NEK1_uc003isc.1_Missense_Mutation_p.K200I|NEK1_uc003isd.1_Missense_Mutation_p.K200I|NEK1_uc003ise.1_Missense_Mutation_p.K200I|NEK1_uc003isf.1_Missense_Mutation_p.K200I|NEK1_uc003isg.1_Missense_Mutation_p.K121I	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	200	Protein kinase.				cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TACAGCATGTTTAAGTGTACA	0.289													6	8					0	0	0.001984	0	0	
CLCN3	1182	broad.mit.edu	37	4	170557218	170557218	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:170557218T>C	uc003isi.2	+	2	648	c.139T>C	c.(139-141)TTA>CTA	p.L47L	CLCN3_uc003ish.2_Silent_p.L47L|CLCN3_uc011cjz.1_5'UTR|CLCN3_uc011cka.1_Silent_p.L47L	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	47	Cytoplasmic (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		TGACAATTTATTAGATGGTGA	0.343													42	85					0	0	0.013114	0	0	
FRG1	2483	broad.mit.edu	37	4	190878646	190878646	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr4:190878646G>T	uc003izs.2	+	6	717	c.526G>T	c.(526-528)GAA>TAA	p.E176*		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	176					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		AGGAGAAGAAGAAATGATCAA	0.373													4	28					2.7689e-08	3.02945e-08	0.001984	1	0	
ADAMTS16	170690	broad.mit.edu	37	5	5239336	5239336	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:5239336T>C	uc003jdl.2	+	15	2365	c.2227T>C	c.(2227-2229)TCA>CCA	p.S743P	ADAMTS16_uc003jdk.1_Missense_Mutation_p.S743P|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	743	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CGGGAATAACTCAGCCTGCAC	0.512													56	130					0	0	0.014410	0	0	
KIAA0947	23379	broad.mit.edu	37	5	5462216	5462216	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:5462216C>G	uc003jdm.3	+	13	2991	c.2769C>G	c.(2767-2769)AGC>AGG	p.S923R		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	923										ovary(1)|central_nervous_system(1)	2						CTGTGAAAAGCATTTCACCAG	0.393													21	46					0	0	0.012319	0	0	
CDH9	1007	broad.mit.edu	37	5	26881298	26881298	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:26881298G>A	uc003jgs.1	-	12	2486	c.2317C>T	c.(2317-2319)CGT>TGT	p.R773C	CDH9_uc011cnv.1_Missense_Mutation_p.R366C	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	773	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTTTGAAACGAGGCCCCCAG	0.408													16	90					0	0	0.004990	0	0	
ZFR	51663	broad.mit.edu	37	5	32420129	32420129	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:32420129C>A	uc003jhr.1	-	3	297	c.217G>T	c.(217-219)GCT>TCT	p.A73S	ZFR_uc010iun.1_Missense_Mutation_p.A73S	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	73	Ala-rich.				multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		ACTGTGTGAGCAGCTACTGGA	0.542													7	45					0.00198382	0.00203119	0.001984	1	0	
MAST4	375449	broad.mit.edu	37	5	66460529	66460529	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:66460529C>T	uc003jut.1	+	28	5023	c.4955C>T	c.(4954-4956)CCA>CTA	p.P1652L	MAST4_uc003juw.2_Missense_Mutation_p.P1580L|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1844						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCTGTGCCACCAGTTCTCCCC	0.562													5	54					0	0	0.000602	0	0	
PDE8B	8622	broad.mit.edu	37	5	76721718	76721718	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:76721718G>A	uc003kfa.2	+	21	2590	c.2545G>A	c.(2545-2547)GAT>AAT	p.D849N	PDE8B_uc003kfb.2_Missense_Mutation_p.D829N|PDE8B_uc003kfc.2_Missense_Mutation_p.D794N|PDE8B_uc003kfd.2_Missense_Mutation_p.D802N|PDE8B_uc003kfe.2_Missense_Mutation_p.D752N	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	849	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TGATGCTTGGGATGGTAAGAC	0.388													15	52					0	0	0.003163	0	0	
GPR98	84059	broad.mit.edu	37	5	90008210	90008210	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:90008210C>T	uc003kju.2	+	42	9245	c.9149C>T	c.(9148-9150)CCT>CTT	p.P3050L	GPR98_uc003kjt.2_Missense_Mutation_p.P756L|GPR98_uc003kjv.2_Missense_Mutation_p.P650L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3050	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTAACAAATCCTTCTCCTGGA	0.348													3	2					0	0	0.004672	0	0	
ELL2	22936	broad.mit.edu	37	5	95242421	95242421	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:95242421A>C	uc003klr.3	-	5	897	c.547T>G	c.(547-549)TCA>GCA	p.S183A		NM_012081	NP_036213	O00472	ELL2_HUMAN	elongation factor, RNA polymerase II, 2	183					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				central_nervous_system(1)	1		all_cancers(142;2.04e-06)|all_epithelial(76;3.1e-09)|all_lung(232;0.00309)|Lung NSC(167;0.00454)|Ovarian(225;0.0165)|Colorectal(57;0.0343)|Breast(839;0.198)		all cancers(79;2.16e-15)		ATGGGGGTTGACCTTTTCCTC	0.458													42	137					0	0	0.007835	0	0	
SRP19	6728	broad.mit.edu	37	5	112228333	112228333	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:112228333T>A	uc011cvv.1	+	4	1327	c.1072T>A	c.(1072-1074)TTT>ATT	p.F358I	SRP19_uc011cvu.1_Missense_Mutation_p.F343I|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		ACACTGCAACTTTCTTCATGT	0.428													8	96					0	0	0.008291	0	0	
TGFBI	7045	broad.mit.edu	37	5	135382059	135382059	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:135382059G>A	uc003lbf.3	+	4	495	c.334G>A	c.(334-336)GTC>ATC	p.V112I	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	112	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GACCCTGGGAGTCGTTGGATC	0.612													11	59					0	0	0.013537	0	0	
TGFBI	7045	broad.mit.edu	37	5	135396544	135396544	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:135396544A>C	uc003lbf.3	+	14	1986	c.1825A>C	c.(1825-1827)AAC>CAC	p.N609H	TGFBI_uc003lbg.3_Missense_Mutation_p.N342H|TGFBI_uc003lbh.3_Missense_Mutation_p.N435H|TGFBI_uc011cyb.1_Missense_Mutation_p.N435H|TGFBI_uc010jed.2_Missense_Mutation_p.N342H|TGFBI_uc010jee.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	609	FAS1 4.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTGAGTGTCAACAAGGAGCC	0.388													8	31					0	0	0.010729	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140222821	140222821	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140222821G>A	uc003lhs.2	+	1	1915	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E639K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTGGACGAAGCGGACTC	0.647													47	106					0	0	0.014410	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140250586	140250586	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140250586C>T	uc003lia.2	+	1	2756	c.1898C>T	c.(1897-1899)ACG>ATG	p.T633M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.T633M	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	633	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATAAGCACAACGCGTGCCCTG	0.662													34	70					0	0	0.013726	0	0	
PCDHB1	29930	broad.mit.edu	37	5	140432602	140432602	+	Missense_Mutation	SNP	C	T	T	rs116101801	by1000genomes	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140432602C>T	uc003lik.1	+	1	1624	c.1547C>T	c.(1546-1548)GCG>GTG	p.A516V		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	516	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGCTCTACGCGCTGAGAACC	0.428													6	52					0	0	0.001168	0	0	
PCDHB3	56132	broad.mit.edu	37	5	140482191	140482191	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140482191C>T	uc003lio.2	+	1	1958	c.1958C>T	c.(1957-1959)TCG>TTG	p.S653L	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	653	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCCGCGCTCGGCCACCGCC	0.706													32	82					0	0	0.010818	0	0	
PCDHB17	54661	broad.mit.edu	37	5	140536576	140536576	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140536576G>A	uc003lis.2	+	1	997	c.997G>A	c.(997-999)GTA>ATA	p.V333I		NR_001280				SubName: Full=Protocadherin-psi1;												0						AAAATGCACCGTAGCCATAGA	0.423													3	6					0	0	0.004672	0	0	
PCDHB11	56125	broad.mit.edu	37	5	140581647	140581647	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140581647T>C	uc003liy.2	+	1	2300	c.2300T>C	c.(2299-2301)CTA>CCA	p.L767P	PCDHB11_uc011daj.1_Missense_Mutation_p.L402P	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	767	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCAAGTTCCTAAAACCGGTT	0.463													33	86					0	0	0.012213	0	0	
PCDHGB1	56104	broad.mit.edu	37	5	140731731	140731731	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:140731731G>A	uc003ljo.1	+	1	1904	c.1904G>A	c.(1903-1905)CGC>CAC	p.R635H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.R635H	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	635	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGCGGCCCGCCAGCGCCTG	0.687													15	44					0	0	0.006122	0	0	
FGF1	2246	broad.mit.edu	37	5	141974992	141974992	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:141974992T>G	uc003lmm.2	-	4	411	c.331A>C	c.(331-333)ACC>CCC	p.T111P	FGF1_uc011dbi.1_3'UTR|FGF1_uc003lmn.3_Missense_Mutation_p.T111P|FGF1_uc003lmp.3_3'UTR|FGF1_uc003lmq.2_Missense_Mutation_p.T111P|FGF1_uc010jgj.2_Missense_Mutation_p.T110P|FGF1_uc003lmr.2_Missense_Mutation_p.T111P|FGF1_uc003lms.3_Missense_Mutation_p.T111P	NM_001144892	NP_001138364	P05230	FGF1_HUMAN	fibroblast growth factor 1 (acidic) isoform 1	111					angiogenesis|cellular response to heat|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cell migration|positive regulation of cholesterol biosynthetic process|positive regulation of intracellular protein kinase cascade|positive regulation of transcription from RNA polymerase II promoter	cell cortex|cytosol|extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|S100 alpha binding				0		all_neural(839;0.0416)|Ovarian(839;0.0955)|all_hematologic(541;0.1)|Prostate(461;0.157)|Lung NSC(810;0.21)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00032)	Pentosan Polysulfate(DB00686)	GATATATAGGTGTTGTAATGG	0.443													16	56					0	0	0.006122	0	0	
FAT2	2196	broad.mit.edu	37	5	150945266	150945266	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:150945266C>A	uc003lue.3	-	1	3240	c.3227G>T	c.(3226-3228)GGA>GTA	p.G1076V	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.G1076V	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1076	Cadherin 9.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCTGCGAGTCCAGTGCCAGC	0.587													12	26					2.80697e-09	3.10578e-09	0.010729	1	0	
C5orf54	63920	broad.mit.edu	37	5	159821852	159821852	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:159821852C>A	uc003lye.1	-	2	1110	c.646G>T	c.(646-648)GGA>TGA	p.G216*	C5orf54_uc003lyf.1_Nonsense_Mutation_p.G216*	NM_022090	NP_071373	Q8IZ13	CE054_HUMAN	transposon-derived Buster3 transposase-like	216										pancreas(1)	1						acatctattcctttcatggat	0													6	61					0.00116845	0.00120173	0.001168	1	0	
ATP10B	23120	broad.mit.edu	37	5	160061518	160061518	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:160061518C>G	uc003lym.1	-	12	2071	c.1224G>C	c.(1222-1224)GAG>GAC	p.E408D	ATP10B_uc003lyp.2_Missense_Mutation_p.E408D|ATP10B_uc011deg.1_Missense_Mutation_p.E452D|ATP10B_uc003lyn.2_5'UTR|ATP10B_uc003lyo.2_Missense_Mutation_p.E380D	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	408	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATAAATCGGTCTCTTCATCAT	0.493													45	131					0	0	0.010771	0	0	
C5orf41	153222	broad.mit.edu	37	5	172513607	172513607	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:172513607A>G	uc003mch.2	+	3	417	c.113A>G	c.(112-114)GAT>GGT	p.D38G	C5orf41_uc003mcg.2_Missense_Mutation_p.D38G|C5orf41_uc003mcf.2_Missense_Mutation_p.D38G|C5orf41_uc011dfd.1_Missense_Mutation_p.D38G	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	38							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AACAGTTCGGATCCAGATTTC	0.418													14	111					0	0	0.003163	0	0	
DBN1	1627	broad.mit.edu	37	5	176894295	176894295	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:176894295C>G	uc003mgy.2	-	6	688	c.516G>C	c.(514-516)ATG>ATC	p.M172I	DBN1_uc003mgx.2_Missense_Mutation_p.M174I|DBN1_uc010jkn.1_Missense_Mutation_p.M122I|DBN1_uc003mgz.1_Missense_Mutation_p.M109I	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	172					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TAATCCGCTTCATTTCCACAG	0.602													62	229					0	0	0.014410	0	0	
NHP2	55651	broad.mit.edu	37	5	177580502	177580502	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:177580502C>G	uc003mir.2	-	2	363	c.220G>C	c.(220-222)GGA>CGA	p.G74R	NHP2_uc003mis.2_Missense_Mutation_p.G74R	NM_017838	NP_060308	Q9NX24	NHP2_HUMAN	nucleolar protein family A, member 2 isoform a	74					rRNA pseudouridine synthesis	Cajal body|nucleolus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding				0						CCTTTTTCTCCTTTGTTGACA	0.483													31	126					0	0	0.010818	0	0	
ADAMTS2	9509	broad.mit.edu	37	5	178634644	178634644	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:178634644C>G	uc003mjw.2	-	4	761	c.761G>C	c.(760-762)AGG>ACG	p.R254T	ADAMTS2_uc011dgm.1_Missense_Mutation_p.R254T	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	254					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TGCCCTCCGCCTCGAGCTGTT	0.652													11	88					0	0	0.010729	0	0	
FLT4	2324	broad.mit.edu	37	5	180057790	180057790	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:180057790G>A	uc003mma.3	-	3	244	c.165C>T	c.(163-165)CAC>CAT	p.H55H	FLT4_uc003mlz.3_Silent_p.H55H|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.H55H|FLT4_uc011dgz.1_Silent_p.H55H|FLT4_uc011dha.1_Silent_p.H55H	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	55	Ig-like C2-type 1.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACTCGAGGGGGTGCTGTCCCC	0.692									Congenital_Hereditary_Lymphedema				8	20					0	0	0.006214	0	0	
MGAT1	4245	broad.mit.edu	37	5	180219900	180219900	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr5:180219900C>G	uc003mmg.3	-	2	567	c.72G>C	c.(70-72)CTG>CTC	p.L24L	MGAT1_uc010jlf.2_Silent_p.L24L|MGAT1_uc010jlg.2_Silent_p.L24L|MGAT1_uc003mmh.3_Silent_p.L24L|MGAT1_uc010jlh.2_Silent_p.L24L|MGAT1_uc003mmi.3_Silent_p.L24L	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	24	Helical; Signal-anchor for type II membrane protein; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAAGAGGAGCAGCAGGGCAT	0.667													6	9					0	0	0.001168	0	0	
TUBB2A	7280	broad.mit.edu	37	6	3154817	3154817	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:3154817G>C	uc003mvc.2	-	4	704	c.618C>G	c.(616-618)GCC>GCG	p.A206A	TUBB2A_uc003mvb.2_Silent_p.A199A|TUBB2A_uc003mvd.2_Silent_p.A169A	NM_001069	NP_001060	Q13885	TBB2A_HUMAN	tubulin, beta 2	206					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			skin(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.0895)				TGTCATACAGGGCCTCGTTAT	0.597													63	100					0	0	0.014410	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12125636	12125636	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:12125636A>C	uc003nac.2	+	4	5787	c.5608A>C	c.(5608-5610)ACA>CCA	p.T1870P	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1870					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ATTAACTCTTACAGTTCGAAG	0.348													11	52					0	0	0.008291	0	0	
TPMT	7172	broad.mit.edu	37	6	18149277	18149277	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:18149277C>G	uc003ncm.2	-	2	237	c.82G>C	c.(82-84)GAA>CAA	p.E28Q	TPMT_uc010jpm.1_Missense_Mutation_p.E28Q	NM_000367	NP_000358	P51580	TPMT_HUMAN	thiopurine S-methyltransferase	28					xenobiotic metabolic process	cytosol	thiopurine S-methyltransferase activity				0	Ovarian(93;0.016)|Breast(50;0.0245)	all_hematologic(90;0.146)	all cancers(50;0.06)|Epithelial(50;0.0654)		Mercaptopurine(DB01033)	TCTTGCCATTCTTCCAGAGTT	0.388													38	197					0	0	0.007835	0	0	
DCDC2	51473	broad.mit.edu	37	6	24289091	24289091	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:24289091A>G	uc003ndx.2	-	6	1050	c.748T>C	c.(748-750)TCT>CCT	p.S250P	DCDC2_uc003ndy.2_Missense_Mutation_p.S250P	NM_016356	NP_057440	Q9UHG0	DCDC2_HUMAN	doublecortin domain containing 2	250					cellular defense response|intracellular signal transduction|neuron migration					ovary(1)	1		Ovarian(999;0.101)				CTCCCTTTAGACTTTCTGGAT	0.343													4	31					0	0	0.001168	0	0	
SLC17A4	10050	broad.mit.edu	37	6	25769239	25769239	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:25769239G>T	uc003nfe.2	+	3	237	c.118G>T	c.(118-120)GCC>TCC	p.A40S	SLC17A4_uc011djx.1_Missense_Mutation_p.A40S|SLC17A4_uc003nff.1_5'UTR|SLC17A4_uc003nfg.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	40					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						ACATGGGCTGGCCCTCATCTT	0.463													28	48					4.02929e-09	4.45103e-09	0.010818	1	0	
SLC17A2	10246	broad.mit.edu	37	6	25916075	25916075	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:25916075G>A	uc011dkb.1	-	8	1035	c.952C>T	c.(952-954)CCT>TCT	p.P318S	SLC17A2_uc011dkc.1_Missense_Mutation_p.P318S|SLC17A2_uc003nfl.2_Missense_Mutation_p.P318S			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	318	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GCAATAAAAGGCAGGGAGGAC	0.428													13	20					0	0	0.013537	0	0	
HIST1H3J	8356	broad.mit.edu	37	6	27858481	27858481	+	Silent	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:27858481A>C	uc003nka.2	-	1	90	c.90T>G	c.(88-90)GCT>GCG	p.A30A	HIST1H2BO_uc003nkc.1_5'Flank	NM_003535	NP_003526	P68431	H31_HUMAN	histone cluster 1, H3j	30					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CAGTCGCTGGAGCGCTTTTGC	0.632													8	74					0	0	0.003080	0	0	
GPX6	257202	broad.mit.edu	37	6	28472173	28472173	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:28472173C>T	uc011dlj.1	-	6	612	c.562G>A	c.(562-564)GTG>ATG	p.V188M	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	188					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TCGGGCCCCACCAGAAATTTC	0.527													26	64					0	0	0.003954	0	0	
TRIM40	135644	broad.mit.edu	37	6	30114861	30114861	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:30114861C>G	uc003npk.2	+	4	927	c.541C>G	c.(541-543)CAG>GAG	p.Q181E	TRIM40_uc003npm.2_Missense_Mutation_p.Q152E	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	181						intracellular	zinc ion binding			ovary(1)	1						GTGGCTGGGCCAGCTGGAGCA	0.607													15	23					0	0	0.002450	0	0	
TNXB	7148	broad.mit.edu	37	6	32065796	32065796	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:32065796G>A	uc003nzl.2	-	2	382	c.180C>T	c.(178-180)TAC>TAT	p.Y60Y	TNXB_uc010jts.1_Silent_p.Y59Y|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	60					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGTGTGCTCGTAAAGCTGAG	0.657													3	37					0	0	0.009096	0	0	
UHRF1BP1	54887	broad.mit.edu	37	6	34825517	34825517	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:34825517C>T	uc003oju.3	+	13	1824	c.1590C>T	c.(1588-1590)CTC>CTT	p.L530L	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_5'Flank	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	530										ovary(3)	3						GTCCTAATCTCTACATTCAGT	0.398													19	130					0	0	0.012319	0	0	
SCUBE3	222663	broad.mit.edu	37	6	35199608	35199608	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:35199608C>G	uc003okf.1	+	4	447	c.441C>G	c.(439-441)AAC>AAG	p.N147K	SCUBE3_uc003okg.1_Missense_Mutation_p.N147K|SCUBE3_uc003okh.1_Missense_Mutation_p.N18K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	147	EGF-like 3; calcium-binding (Potential).				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						TCAGCGACAACCAGCATACCT	0.622													9	48					0	0	0.006214	0	0	
SLC26A8	116369	broad.mit.edu	37	6	35980070	35980070	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:35980070C>A	uc003olm.2	-	3	379	c.268G>T	c.(268-270)GAT>TAT	p.D90Y	SLC26A8_uc003oln.2_Missense_Mutation_p.D90Y|SLC26A8_uc003oll.2_Missense_Mutation_p.D90Y	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	90	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						AGAAGCCAATCCTTTAATCGA	0.458													93	136					4.21773e-46	4.99718e-46	0.014410	1	0	
BRPF3	27154	broad.mit.edu	37	6	36169369	36169369	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:36169369G>A	uc003olv.3	+	2	1494	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	BRPF3_uc010jwb.2_Missense_Mutation_p.E424K|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_RNA|BRPF3_uc011dtk.1_Missense_Mutation_p.E424K	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	424	Glu-rich.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ggaagaagaggaagaggtgga	0.448													9	16					0	0	0.004482	0	0	
FOXP4	116113	broad.mit.edu	37	6	41558042	41558042	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:41558042C>A	uc003oql.2	+	12	1849	c.1391C>A	c.(1390-1392)GCC>GAC	p.A464D	FOXP4_uc003oqm.2_Missense_Mutation_p.A462D|FOXP4_uc003oqn.2_Missense_Mutation_p.A451D	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	464			A -> T (in a breast cancer sample; somatic mutation).		embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					TACAAGAACGCCGACGTCCGG	0.622													51	128					1.38909e-20	1.62061e-20	0.014410	1	0	
SRF	6722	broad.mit.edu	37	6	43141605	43141605	+	Silent	SNP	G	A	A	rs142020494	byFrequency	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:43141605G>A	uc003oui.2	+	2	1009	c.534G>A	c.(532-534)CTG>CTA	p.L178L	SRF_uc011dvf.1_5'UTR	NM_003131	NP_003122	P11831	SRF_HUMAN	serum response factor (c-fos serum response	178	MADS-box.||Involved in dimerization.				angiogenesis involved in wound healing|cell migration involved in sprouting angiogenesis|cellular senescence|heart looping|muscle cell homeostasis|neuron development|positive regulation of cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of smooth muscle cell differentiation|response to cytokine stimulus|response to hormone stimulus|response to toxin|transcription from RNA polymerase II promoter|trophectodermal cell differentiation	endoplasmic reticulum	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			ovary(1)|breast(1)|central_nervous_system(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.011)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			TGTCCACGCTGACAGGGACAC	0.522													21	62					0	0	0.002780	0	0	
TDRD6	221400	broad.mit.edu	37	6	46658338	46658338	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:46658338G>C	uc003oyj.2	+	1	2473	c.2473G>C	c.(2473-2475)GCT>CCT	p.A825P	TDRD6_uc010jze.2_Missense_Mutation_p.A819P	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	825	Tudor 4.				cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TGCTTGTTTGGCTAAGCGAAC	0.413													8	84					0	0	0.003080	0	0	
MEP1A	4224	broad.mit.edu	37	6	46801255	46801255	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:46801255C>T	uc010jzh.1	+	11	1631	c.1589C>T	c.(1588-1590)TCG>TTG	p.S530L	MEP1A_uc011dwg.1_Missense_Mutation_p.S252L|MEP1A_uc011dwh.1_Missense_Mutation_p.S558L|MEP1A_uc011dwi.1_Missense_Mutation_p.S430L	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	530	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TTCACTACCTCGAAGTCGCAC	0.522													12	136					0	0	0.013537	0	0	
PKHD1	5314	broad.mit.edu	37	6	51640698	51640698	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:51640698T>C	uc003pah.1	-	54	8738	c.8462A>G	c.(8461-8463)GAA>GGA	p.E2821G	PKHD1_uc010jzn.1_Missense_Mutation_p.E804G|PKHD1_uc003pai.2_Missense_Mutation_p.E2821G	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2821	G8 2.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TTGTTCCTTTTCTAAGGGATT	0.338													25	67					0	0	0.003330	0	0	
GSTA5	221357	broad.mit.edu	37	6	52696671	52696671	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:52696671T>A	uc003pba.1	-	7	714	c.644A>T	c.(643-645)GAA>GTA	p.E215V		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	215					glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity	p.E215K(1)		ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	CTTCCTTGCTTCTTCTAAAGA	0.453													29	108					0	0	0.006320	0	0	
KIAA1586	57691	broad.mit.edu	37	6	56917860	56917860	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:56917860T>C	uc003pdj.2	+	4	733	c.563T>C	c.(562-564)TTA>TCA	p.L188S	KIAA1586_uc011dxm.1_Missense_Mutation_p.L161S	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	188							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ATTGCATATTTAGTAACCCCT	0.378													8	62					0	0	0.006214	0	0	
LGSN	51557	broad.mit.edu	37	6	63989980	63989980	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:63989980C>G	uc003peh.2	-	4	1510	c.1476G>C	c.(1474-1476)TTG>TTC	p.L492F	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	492					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	CTTCATTCTCCAACTCATATT	0.353													23	65					0	0	0.014323	0	0	
COL19A1	1310	broad.mit.edu	37	6	70812095	70812095	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:70812095C>T	uc003pfc.1	+	16	1376	c.1259C>T	c.(1258-1260)CCA>CTA	p.P420L	COL19A1_uc010kam.1_Missense_Mutation_p.P316L	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	420	Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCCGGAAAACCAGGACCCCCA	0.388													14	47					0	0	0.003163	0	0	
GJA1	2697	broad.mit.edu	37	6	121768639	121768639	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:121768639G>C	uc003pyr.2	+	2	896	c.646G>C	c.(646-648)GTG>CTG	p.V216L	GJA1_uc011ebo.1_Missense_Mutation_p.V117L|GJA1_uc011ebp.1_Missense_Mutation_p.V4L	NM_000165	NP_000156	P17302	CXA1_HUMAN	connexin 43	216	Helical; (Potential).		V -> L (in ODDD).		cell-cell signaling|cellular membrane organization|gap junction assembly|heart development|muscle contraction|positive regulation of I-kappaB kinase/NF-kappaB cascade	connexon complex|Golgi-associated vesicle membrane|integral to plasma membrane|membrane raft	ion transmembrane transporter activity|signal transducer activity			ovary(2)	2				GBM - Glioblastoma multiforme(226;0.00252)	Carvedilol(DB01136)	CATGCTGGTGGTGTCCTTGGT	0.488													23	175					0	0	0.004656	0	0	
LAMA2	3908	broad.mit.edu	37	6	129371152	129371152	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:129371152A>T	uc003qbn.2	+	2	307	c.202A>T	c.(202-204)AAA>TAA	p.K68*	LAMA2_uc003qbo.2_Nonsense_Mutation_p.K68*	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	68	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AATGTACTGCAAATTGGTAGA	0.433													14	65					0	0	0.001855	0	0	
LAMA2	3908	broad.mit.edu	37	6	129465225	129465225	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:129465225A>T	uc003qbn.2	+	5	924	c.819A>T	c.(817-819)AGA>AGT	p.R273S	LAMA2_uc003qbo.2_Missense_Mutation_p.R273S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	273	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCACCAGAAGAGTAAGTTATG	0.368													17	35					0	0	0.008871	0	0	
MED23	9439	broad.mit.edu	37	6	131919758	131919758	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:131919758G>C	uc003qcs.1	-	19	2538	c.2364C>G	c.(2362-2364)CTC>CTG	p.L788L	MED23_uc003qcq.2_Silent_p.L794L|MED23_uc011eca.1_Silent_p.L429L|MED23_uc003qct.1_Silent_p.L794L	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	788					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GACAAAGAAAGAGAGGAGGGG	0.388													10	61					0	0	0.008291	0	0	
MED23	9439	broad.mit.edu	37	6	131944588	131944588	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:131944588G>A	uc003qcs.1	-	5	473	c.299C>T	c.(298-300)TCC>TTC	p.S100F	MED23_uc003qcq.2_Missense_Mutation_p.S100F|MED23_uc003qct.1_Missense_Mutation_p.S100F|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	100					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GTTTATCAGGGATTCACAAAC	0.358													14	58					0	0	0.003163	0	0	
KIAA1244	57221	broad.mit.edu	37	6	138583879	138583879	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:138583879T>G	uc003qhu.2	+	12	1259	c.1259T>G	c.(1258-1260)ATC>AGC	p.I420S		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	420					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AAGGGTGGCATCGAAGCTTGC	0.493													20	154					0	0	0.012319	0	0	
GRM1	2911	broad.mit.edu	37	6	146755717	146755717	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:146755717C>T	uc010khw.1	+	9	3840	c.3370C>T	c.(3370-3372)CTG>TTG	p.L1124L	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1124	Asp/Glu-rich (acidic).|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	AGAAGACGAACTGGAAGAGGA	0.642													10	112					0	0	0.008291	0	0	
MTHFD1L	25902	broad.mit.edu	37	6	151203921	151203921	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:151203921C>T	uc003qob.2	+	5	709	c.441C>T	c.(439-441)ATC>ATT	p.I147I	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Silent_p.I147I|MTHFD1L_uc003qoc.2_Silent_p.I94I|MTHFD1L_uc003qoa.1_Silent_p.I147I|MTHFD1L_uc010kil.1_RNA	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	147	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		TCTTAAAGATCAATGAAGATA	0.323													12	21					0	0	0.001855	0	0	
SYNE1	23345	broad.mit.edu	37	6	152650897	152650897	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:152650897C>T	uc010kiw.2	-	78	15525	c.14923G>A	c.(14923-14925)GGA>AGA	p.G4975R	SYNE1_uc003qot.3_Missense_Mutation_p.G4904R|SYNE1_uc003qou.3_Missense_Mutation_p.G4975R|SYNE1_uc010kiz.2_Missense_Mutation_p.G730R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4975	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGATGTCTCCATCCAGCTCT	0.463										HNSCC(10;0.0054)			37	90					0	0	0.003755	0	0	
SYNE1	23345	broad.mit.edu	37	6	152712632	152712632	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:152712632C>A	uc010kiw.2	-	52	8386	c.7784G>T	c.(7783-7785)GGC>GTC	p.G2595V	SYNE1_uc003qot.3_Missense_Mutation_p.G2602V|SYNE1_uc003qou.3_Missense_Mutation_p.G2595V|SYNE1_uc010kjb.1_Missense_Mutation_p.G2578V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2595	Cytoplasmic (Potential).|Spectrin 5.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACACAGGCGGCCCTCCTGCCC	0.502										HNSCC(10;0.0054)			22	37					1.22574e-08	1.34969e-08	0.014323	1	0	
SYNE1	23345	broad.mit.edu	37	6	152841659	152841659	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:152841659G>A	uc010kiw.2	-	6	846	c.244C>T	c.(244-246)CGG>TGG	p.R82W	SYNE1_uc003qot.3_Missense_Mutation_p.R82W|SYNE1_uc003qou.3_Missense_Mutation_p.R82W|SYNE1_uc010kjb.1_Missense_Mutation_p.R82W|SYNE1_uc003qpa.1_Missense_Mutation_p.R82W	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	82	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CGCTTCATCCGGCGTCCTTGT	0.393										HNSCC(10;0.0054)			47	91					0	0	0.014410	0	0	
PARK2	5071	broad.mit.edu	37	6	161969977	161969977	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:161969977A>T	uc003qtx.3	-	9	1126	c.992T>A	c.(991-993)TTA>TAA	p.L331*	PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Nonsense_Mutation_p.L140*|PARK2_uc003qtw.3_Nonsense_Mutation_p.L140*|PARK2_uc003qty.3_Nonsense_Mutation_p.L303*|PARK2_uc003qtz.3_Nonsense_Mutation_p.L182*|PARK2_uc010kke.1_Nonsense_Mutation_p.L350*|PARK2_uc011egf.1_Nonsense_Mutation_p.L5*	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	331	IBR-type.				aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		GCGGGGGCATAACACGCCCCC	0.597													12	50					0	0	0.010729	0	0	
RPS6KA2	6196	broad.mit.edu	37	6	166883360	166883360	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr6:166883360C>T	uc003qvb.1	-	11	1160	c.941G>A	c.(940-942)CGC>CAC	p.R314H	RPS6KA2_uc011ego.1_Missense_Mutation_p.R225H|RPS6KA2_uc010kkl.1_Missense_Mutation_p.R225H|RPS6KA2_uc003qvc.1_Missense_Mutation_p.R322H|RPS6KA2_uc003qvd.1_Missense_Mutation_p.R339H	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	314	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		GAAGGGATGGCGCTTAATTTC	0.502													13	52					0	0	0.001855	0	0	
COL28A1	340267	broad.mit.edu	37	7	7555464	7555464	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:7555464G>T	uc003src.1	-	8	980	c.863C>A	c.(862-864)CCT>CAT	p.P288H	COL28A1_uc011jxe.1_Translation_Start_Site|COL28A1_uc003srd.2_Translation_Start_Site	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	288					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CTTGTACCCAGGAATTCCCTA	0.284													21	121					8.24728e-16	9.44514e-16	0.004656	1	0	
PRPS1L1	221823	broad.mit.edu	37	7	18067192	18067192	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:18067192T>A	uc003stz.2	-	1	295	c.214A>T	c.(214-216)ATC>TTC	p.I72F		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	72					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					TTAATCATGATCAAAAGCTCC	0.488													95	325					0	0	0.014410	0	0	
GPNMB	10457	broad.mit.edu	37	7	23286540	23286540	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:23286540G>A	uc003swc.2	+	1	225	c.64G>A	c.(64-66)GCC>ACC	p.A22T	GPNMB_uc003swa.2_Missense_Mutation_p.A22T|GPNMB_uc003swb.2_Missense_Mutation_p.A22T|GPNMB_uc011jyy.1_Missense_Mutation_p.A22T|GPNMB_uc011jyz.1_Missense_Mutation_p.A22T	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	22	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			ACTTGATGCCGCCAAACGTGA	0.448													6	159					0	0	0.001168	0	0	
GPNMB	10457	broad.mit.edu	37	7	23296606	23296606	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:23296606G>A	uc003swc.2	+	4	624	c.463G>A	c.(463-465)GTC>ATC	p.V155I	GPNMB_uc003swa.2_Missense_Mutation_p.V155I|GPNMB_uc003swb.2_Missense_Mutation_p.V155I|GPNMB_uc011jyy.1_Intron|GPNMB_uc011jyz.1_Missense_Mutation_p.V56I	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	155	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			CCATCATAACGTCTTCCCTGA	0.483													23	120					0	0	0.002780	0	0	
GPNMB	10457	broad.mit.edu	37	7	23307588	23307588	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:23307588G>C	uc003swc.2	+	8	1398	c.1237G>C	c.(1237-1239)GTC>CTC	p.V413L	GPNMB_uc003swb.2_Missense_Mutation_p.V401L|GPNMB_uc011jyy.1_Missense_Mutation_p.V355L|GPNMB_uc011jyz.1_Missense_Mutation_p.V302L	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	413	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			AATAGACTTTGTCGTGACCTG	0.493													37	157					0	0	0.003271	0	0	
IGF2BP3	10643	broad.mit.edu	37	7	23385595	23385595	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:23385595A>T	uc003swg.2	-	8	1171	c.905T>A	c.(904-906)ATT>AAT	p.I302N	IGF2BP3_uc003swf.2_Translation_Start_Site	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	302	KH 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						GTCTTGCTCAATTTTTTTAAG	0.348													36	55					0	0	0.004878	0	0	
HERPUD2	64224	broad.mit.edu	37	7	35673968	35673968	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:35673968A>C	uc003tet.2	-	7	1818	c.1013T>G	c.(1012-1014)GTT>GGT	p.V338G	HERPUD2_uc003tes.3_Missense_Mutation_p.V338G	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	338					response to unfolded protein	integral to membrane				ovary(3)	3						ATCATTGTTAACTTCGGCATT	0.383													14	45					0	0	0.002450	0	0	
ABCA13	154664	broad.mit.edu	37	7	48321025	48321025	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:48321025G>A	uc003toq.2	+	19	8837	c.8812G>A	c.(8812-8814)GTA>ATA	p.V2938I	ABCA13_uc010kys.1_Missense_Mutation_p.V12I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2938					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GATGATGGTCGTACGTGTGCT	0.463													3	13					0	0	0.004672	0	0	
ABCA13	154664	broad.mit.edu	37	7	48494772	48494772	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:48494772T>A	uc003toq.2	+	43	12729	c.12704T>A	c.(12703-12705)CTC>CAC	p.L4235H	ABCA13_uc010kys.1_Missense_Mutation_p.L1309H|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4235	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTGCCAGTCCTCTTCGTGGCC	0.687													3	7					0	0	0.004672	0	0	
ABCA13	154664	broad.mit.edu	37	7	48559761	48559761	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:48559761G>T	uc003toq.2	+	53	13947	c.13922G>T	c.(13921-13923)GGC>GTC	p.G4641V	ABCA13_uc010kys.1_Missense_Mutation_p.G1716V|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.G371V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4641					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CACAACTTCGGCATTGATTCC	0.463													8	46					0.000157383	0.000163583	0.003080	1	0	
GTF2IRD1	9569	broad.mit.edu	37	7	73973284	73973284	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:73973284G>T	uc003uaq.2	+	21	2639	c.2246G>T	c.(2245-2247)GGA>GTA	p.G749V	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.G766V|GTF2IRD1_uc003uap.2_Missense_Mutation_p.G734V|GTF2IRD1_uc003uar.1_Missense_Mutation_p.G734V	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	749	GTF2I-like 4.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CTGCCCCCAGGAATCCCGTTC	0.587													29	78					3.73148e-12	4.21712e-12	0.007291	1	0	
ABCB4	5244	broad.mit.edu	37	7	87092195	87092195	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:87092195C>A	uc003uiv.1	-	4	241	c.165G>T	c.(163-165)TTG>TTT	p.L55F	ABCB4_uc003uiw.1_Missense_Mutation_p.L55F|ABCB4_uc003uix.1_Missense_Mutation_p.L55F|ABCB4_uc003uiy.2_Missense_Mutation_p.L55F	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	55	Helical; (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GCGACATAAACAATTTATCCT	0.373													9	28					0.000673444	0.000695757	0.008291	1	0	
ZNF804B	219578	broad.mit.edu	37	7	88956755	88956755	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:88956755A>G	uc011khi.1	+	3	885	c.347A>G	c.(346-348)CAT>CGT	p.H116R		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	116						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AAACGACTTCATCAGCTGGCT	0.383										HNSCC(36;0.09)			20	49					0	0	0.008871	0	0	
KRIT1	889	broad.mit.edu	37	7	91871404	91871404	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:91871404G>A	uc003ulq.1	-	2	217	c.46C>T	c.(46-48)CGT>TGT	p.R16C	KRIT1_uc010lev.1_5'Flank|KRIT1_uc003ulr.1_Missense_Mutation_p.R16C|KRIT1_uc003uls.1_Missense_Mutation_p.R16C|KRIT1_uc003ult.1_Missense_Mutation_p.R16C|KRIT1_uc003ulu.1_Missense_Mutation_p.R16C|KRIT1_uc003ulv.1_Missense_Mutation_p.R16C	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	16					angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TTCTTTGGACGAATAACAGCA	0.303									Familial_Cerebral_Cavernous_Angioma				25	171					0	0	0.006320	0	0	
CALCR	799	broad.mit.edu	37	7	93108743	93108743	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:93108743A>C	uc003umv.1	-	4	443	c.182T>G	c.(181-183)GTA>GGA	p.V61G	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.V43G|CALCR_uc003umw.2_Missense_Mutation_p.V43G	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	43	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CTTTCGTCCTACGACGTAAAG	0.403													42	132					0	0	0.009718	0	0	
ASB4	51666	broad.mit.edu	37	7	95165756	95165756	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:95165756A>G	uc011kij.1	+	4	986	c.986A>G	c.(985-987)CAG>CGG	p.Q329R		NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	329					intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CAGGTGATACAGGCCTGCCAT	0.428													10	32					0	0	0.008291	0	0	
ZAN	7455	broad.mit.edu	37	7	100350051	100350051	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:100350051A>T	uc003uwj.2	+	14	2488	c.2323A>T	c.(2323-2325)ATC>TTC	p.I775F	ZAN_uc003uwk.2_Missense_Mutation_p.I775F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	775	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AAAACTCACCATCCCCACAGA	0.532													37	63					0	0	0.004289	0	0	
ZAN	7455	broad.mit.edu	37	7	100386946	100386946	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:100386946G>C	uc003uwj.2	+	40	7499	c.7334G>C	c.(7333-7335)AGC>ACC	p.S2445T	ZAN_uc003uwk.2_Missense_Mutation_p.S2445T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.S495T	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2445	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CTGGTCGTCAGCTTTGGTGGA	0.532													22	59					0	0	0.014323	0	0	
MOGAT3	346606	broad.mit.edu	37	7	100843711	100843711	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:100843711C>G	uc003uyc.2	-	2	362	c.195G>C	c.(193-195)GTG>GTC	p.V65V	MOGAT3_uc010lhr.2_Silent_p.V65V	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	65	Helical; (Potential).				glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					TGTCCCAGTCCACATAGAGCC	0.592													9	14					0	0	0.004482	0	0	
LHFPL3	375612	broad.mit.edu	37	7	104377251	104377251	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:104377251T>C	uc003vce.2	+	2	699	c.575T>C	c.(574-576)CTG>CCG	p.L192P	LHFPL3_uc003vcf.2_Missense_Mutation_p.L192P	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	178	Helical; (Potential).					integral to membrane					0						GCATACATCCTGGCTATTATT	0.473													14	30					0	0	0.002450	0	0	
MLL5	55904	broad.mit.edu	37	7	104753013	104753013	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:104753013G>C	uc003vcm.2	+	27	5344	c.4810G>C	c.(4810-4812)GTG>CTG	p.V1604L	MLL5_uc010ljc.2_Missense_Mutation_p.V1604L|MLL5_uc010ljf.1_Intron|MLL5_uc010ljg.2_Missense_Mutation_p.V338L	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1604	Pro-rich.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						AGGACACCACGTGACTCCAGG	0.527													52	112					0	0	0.014410	0	0	
IMMP2L	83943	broad.mit.edu	37	7	111127338	111127338	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:111127338T>A	uc003vfq.1	-	3	638	c.195A>T	c.(193-195)AAA>AAT	p.K65N	IMMP2L_uc010ljr.1_Missense_Mutation_p.K65N|IMMP2L_uc003vfr.2_Missense_Mutation_p.K65N	NM_032549	NP_115938	Q96T52	IMP2L_HUMAN	IMP2 inner mitochondrial membrane protease-like	65					protein processing involved in protein targeting to mitochondrion|proteolysis	integral to membrane|mitochondrial inner membrane peptidase complex|nucleus	serine-type peptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (4;0.053)|Epithelial(3;2.27e-07)|all cancers(3;1.36e-05)|STAD - Stomach adenocarcinoma(3;0.00148)|KIRC - Kidney renal clear cell carcinoma(11;0.0339)|Lung(3;0.0375)|Kidney(11;0.0415)|LUSC - Lung squamous cell carcinoma(290;0.173)		AATTCCTCACTTTCCAGTGGT	0.363													29	78					0	0	0.013726	0	0	
TRIM24	8805	broad.mit.edu	37	7	138252371	138252371	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:138252371C>T	uc003vuc.2	+	10	1891	c.1676C>T	c.(1675-1677)GCT>GTT	p.A559V	TRIM24_uc003vub.2_Missense_Mutation_p.A525V	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	559					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						CTACAGATGGCTTTCTTGGCT	0.408													21	50					0	0	0.002780	0	0	
ATP6V0A4	50617	broad.mit.edu	37	7	138453928	138453928	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:138453928C>G	uc003vuf.2	-	3	424	c.186G>C	c.(184-186)GAG>GAC	p.E62D	ATP6V0A4_uc003vug.2_Missense_Mutation_p.E62D|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.E62D	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	62	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GGAGGATTCTCTCCAGTGATT	0.353													8	88					0	0	0.004482	0	0	
CHPF2	54480	broad.mit.edu	37	7	150934818	150934818	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:150934818G>C	uc003wjr.1	+	4	2883	c.1370G>C	c.(1369-1371)GGG>GCG	p.G457A	CHPF2_uc003wjq.1_Missense_Mutation_p.G449A|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	457	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						ACACAGCGTGGGCACCGGCGG	0.642													6	44					0	0	0.001984	0	0	
ACTR3B	57180	broad.mit.edu	37	7	152517527	152517527	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr7:152517527G>T	uc003wle.1	+	7	801	c.684G>T	c.(682-684)AAG>AAT	p.K228N	ACTR3B_uc003wlf.1_Missense_Mutation_p.K228N|ACTR3B_uc003wlg.1_Missense_Mutation_p.K140N|ACTR3B_uc011kvp.1_Missense_Mutation_p.K140N	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	228					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		AAGCCATTAAGGTAAAAACAG	0.517													6	6					2.74318e-10	3.06486e-10	0.006214	1	0	
ERICH1	157697	broad.mit.edu	37	8	618699	618699	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:618699A>T	uc003wph.2	-	5	1222	c.1157T>A	c.(1156-1158)GTG>GAG	p.V386E	ERICH1_uc011kwh.1_Missense_Mutation_p.V386E|ERICH1_uc003wpe.1_Missense_Mutation_p.V292E|ERICH1_uc003wpi.2_Missense_Mutation_p.V198E	NM_207332	NP_997215	Q86X53	ERIC1_HUMAN	glutamate-rich 1	386										large_intestine(2)	2		Colorectal(14;0.158)|Ovarian(12;0.17)|Myeloproliferative disorder(644;0.185)|Hepatocellular(245;0.236)		Epithelial(5;3.29e-14)|BRCA - Breast invasive adenocarcinoma(11;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(5;3.65e-06)|READ - Rectum adenocarcinoma(1;0.0325)		CAGGATGGACACGTCTGAGGG	0.547													4	46					0	0	0.000602	0	0	
LZTS1	11178	broad.mit.edu	37	8	20107748	20107748	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:20107748G>A	uc003wzr.2	-	3	1387	c.1276C>T	c.(1276-1278)CTG>TTG	p.L426L	LZTS1_uc010ltg.1_Silent_p.L426L	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	426					cell cycle|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		AGGCCCTCCAGCTTGCCCCGC	0.637													21	56					0	0	0.010504	0	0	
XPO7	23039	broad.mit.edu	37	8	21842211	21842211	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:21842211C>G	uc003xaa.3	+	12	1434	c.1332C>G	c.(1330-1332)GAC>GAG	p.D444E	XPO7_uc010lti.2_Missense_Mutation_p.D453E|XPO7_uc010ltk.2_Missense_Mutation_p.D445E	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	444				Missing (in Ref. 3; BAA34465).	mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		AGCAGTTGGACCAGCTGTCCA	0.537													6	16					0	0	0.001168	0	0	
FAM160B2	64760	broad.mit.edu	37	8	21959336	21959336	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:21959336G>C	uc011kyx.1	+	14	1876	c.1825G>C	c.(1825-1827)GAC>CAC	p.D609H	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	609											0						AGTGCTGTTTGACCGCATGTC	0.642													4	18					0	0	0.009096	0	0	
LGI3	203190	broad.mit.edu	37	8	22006340	22006340	+	Missense_Mutation	SNP	C	T	T	rs143158388	by1000genomes	TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:22006340C>T	uc003xav.2	-	8	1269	c.980G>A	c.(979-981)CGC>CAC	p.R327H	LGI3_uc010ltu.2_Missense_Mutation_p.R303H	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	327	EAR 3.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		GTTAGGCTTGCGCACGCGCTG	0.617													5	28					0	0	0.000602	0	0	
C8orf58	541565	broad.mit.edu	37	8	22458487	22458487	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:22458487T>A	uc003xce.2	+	2	245	c.133T>A	c.(133-135)TCC>ACC	p.S45T	C8orf58_uc011kzl.1_Missense_Mutation_p.S45T|C8orf58_uc003xcf.2_Missense_Mutation_p.S45T	NM_001013842	NP_001013864	Q8NAV2	CH058_HUMAN	hypothetical protein LOC541565	45										skin(1)	1		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00563)|Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CGGGTGCTCATCCTGGGAGAG	0.637													8	35					0	0	0.004482	0	0	
PTK2B	2185	broad.mit.edu	37	8	27278199	27278199	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:27278199C>A	uc003xfn.1	+	9	1217	c.409C>A	c.(409-411)CCA>ACA	p.P137T	PTK2B_uc003xfo.1_Missense_Mutation_p.P137T|PTK2B_uc003xfp.1_Missense_Mutation_p.P137T|PTK2B_uc003xfq.1_Missense_Mutation_p.P137T	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	137	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CCGCTACTTGCCAGAAGACTT	0.498													15	98					5.35267e-07	5.71062e-07	0.007413	1	0	
CLU	1191	broad.mit.edu	37	8	27462624	27462624	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:27462624G>T	uc003xfw.1	-	4	704	c.646C>A	c.(646-648)CCT>ACT	p.P216T	CLU_uc010lux.1_Missense_Mutation_p.P81T|CLU_uc003xfx.1_Missense_Mutation_p.P216T|CLU_uc003xfy.1_Missense_Mutation_p.P227T|CLU_uc003xfz.1_Missense_Mutation_p.P268T	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	216					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		AAGAAGTGAGGCCTCCGGTGG	0.602													8	73					0.00307968	0.00314852	0.003080	1	0	
EXTL3	2137	broad.mit.edu	37	8	28574839	28574839	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:28574839C>G	uc003xgz.1	+	3	1856	c.1263C>G	c.(1261-1263)CGC>CGG	p.R421R		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	421	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GGGAGGACCGCTTGGAATTGC	0.587													6	60					0	0	0.001168	0	0	
ADAM2	2515	broad.mit.edu	37	8	39613329	39613329	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:39613329C>T	uc003xnj.2	-	16	1790	c.1715G>A	c.(1714-1716)TGC>TAC	p.C572Y	ADAM2_uc003xnk.2_Missense_Mutation_p.C553Y|ADAM2_uc011lck.1_Intron|ADAM2_uc003xnl.2_Missense_Mutation_p.C416Y	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	572	Extracellular (Potential).|Cys-rich.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CACAGCAATGCAGAGATGTCC	0.348													14	62					0	0	0.004007	0	0	
FAM110B	90362	broad.mit.edu	37	8	59058842	59058842	+	Missense_Mutation	SNP	C	T	T	rs140524173		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:59058842C>T	uc003xtj.1	+	5	933	c.53C>T	c.(52-54)GCG>GTG	p.A18V		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	18						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				GTCAGCCCCGCGGGCACCTTC	0.667													10	16					0	0	0.006214	0	0	
PREX2	80243	broad.mit.edu	37	8	69030851	69030851	+	Silent	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:69030851G>C	uc003xxv.1	+	27	3420	c.3393G>C	c.(3391-3393)TCG>TCC	p.S1131S		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1131					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGTGCAGCTCGTATTTCCACA	0.433													5	162					0	0	0.001984	0	0	
PREX2	80243	broad.mit.edu	37	8	69033245	69033245	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:69033245G>A	uc003xxv.1	+	30	3712	c.3685G>A	c.(3685-3687)GTC>ATC	p.V1229I		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1229					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCCCAGCAGCGTCCGGACTCT	0.388													8	62					0	0	0.006214	0	0	
MMP16	4325	broad.mit.edu	37	8	89339508	89339508	+	Translation_Start_Site	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:89339508G>A	uc003yeb.3	-	1	210	c.-72C>T	c.(-74--70)AACGA>AATGA		MMP16_uc003yec.2_Translation_Start_Site	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1						collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						tccctccctcGTTTCCTTTCA	0.483													7	39					0	0	0.001984	0	0	
RGS22	26166	broad.mit.edu	37	8	101083727	101083727	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:101083727G>C	uc003yjb.1	-	6	659	c.464C>G	c.(463-465)TCC>TGC	p.S155C	RGS22_uc003yja.1_Intron|RGS22_uc003yjc.1_Missense_Mutation_p.S155C|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	155					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			ATTCATGCCGGACTTGCTCCA	0.378													16	70					0	0	0.007413	0	0	
ABRA	137735	broad.mit.edu	37	8	107773616	107773616	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:107773616G>A	uc003ymm.3	-	2	849	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	265	Interaction with actin (By similarity).				positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			ACTCTTCACTGAAAGGATTGA	0.507													12	109					0	0	0.013537	0	0	
CSMD3	114788	broad.mit.edu	37	8	113363439	113363439	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:113363439A>T	uc003ynu.2	-	40	6449	c.6290T>A	c.(6289-6291)GTA>GAA	p.V2097E	CSMD3_uc003yns.2_Missense_Mutation_p.V1299E|CSMD3_uc003ynt.2_Missense_Mutation_p.V2057E|CSMD3_uc011lhx.1_Missense_Mutation_p.V1993E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2097	Extracellular (Potential).|Sushi 11.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCATCTTCTTACAGGTCCTGG	0.299										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	154					0	0	0.001855	0	0	
CSMD3	114788	broad.mit.edu	37	8	113662442	113662442	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:113662442G>A	uc003ynu.2	-	19	3300	c.3141C>T	c.(3139-3141)CCC>CCT	p.P1047P	CSMD3_uc003yns.2_Silent_p.P319P|CSMD3_uc003ynt.2_Silent_p.P1007P|CSMD3_uc011lhx.1_Silent_p.P943P	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1047	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CGCATAGAAGGGGCTCTTCAT	0.408										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			49	69					0	0	0.014410	0	0	
COL14A1	7373	broad.mit.edu	37	8	121293176	121293176	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:121293176A>C	uc003yox.2	+	31	3967	c.3702A>C	c.(3700-3702)GAA>GAC	p.E1234D	COL14A1_uc003yoz.2_Missense_Mutation_p.E199D	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1234	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AGATGATGGAAATGTTTGGTT	0.284													4	32					0	0	0.009096	0	0	
C8orf76	84933	broad.mit.edu	37	8	124251354	124251354	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:124251354C>A	uc003yqc.1	-	2	179	c.148G>T	c.(148-150)GAT>TAT	p.D50Y	C8orf76_uc003yqd.2_Missense_Mutation_p.D18Y	NM_032847	NP_116236	Q96K31	CH076_HUMAN	hypothetical protein LOC84933	50							binding			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			ACTTCAACATCATCACTGCTT	0.398													43	140					3.39706e-21	3.96998e-21	0.014410	1	0	
ADCY8	114	broad.mit.edu	37	8	131859736	131859736	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:131859736C>T	uc003ytd.3	-	11	2692	c.2436G>A	c.(2434-2436)TCG>TCA	p.S812S	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	812					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCAAGGGTATCGACTTGTCAA	0.348										HNSCC(32;0.087)			8	78					0	0	0.008291	0	0	
COL22A1	169044	broad.mit.edu	37	8	139636017	139636017	+	Silent	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:139636017G>A	uc003yvd.2	-	52	4176	c.3729C>T	c.(3727-3729)GGC>GGT	p.G1243G	COL22A1_uc011ljo.1_Silent_p.G523G	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1243	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TGCCCTCTTTGCCTTCTTCTC	0.463										HNSCC(7;0.00092)			122	187					0	0	0.014410	0	0	
FLJ43860	389690	broad.mit.edu	37	8	142446065	142446065	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:142446065C>G	uc003ywi.2	-	28	3584	c.3503G>C	c.(3502-3504)AGC>ACC	p.S1168T	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1168							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGGCACCATGCTCTGGTGCAC	0.672													5	67					0	0	0.001168	0	0	
BAI1	575	broad.mit.edu	37	8	143558756	143558756	+	Silent	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr8:143558756C>G	uc003ywm.2	+	5	1416	c.1233C>G	c.(1231-1233)GCC>GCG	p.A411A		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	411	Extracellular (Potential).|TSP type-1 3.				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TGCATGGTGCCTGGGATGAGT	0.726													16	94					0	0	0.004007	0	0	
SMARCA2	6595	broad.mit.edu	37	9	2086906	2086906	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:2086906C>A	uc003zhc.2	+	18	2703	c.2604C>A	c.(2602-2604)AAC>AAA	p.N868K	SMARCA2_uc003zhd.2_Missense_Mutation_p.N868K|SMARCA2_uc010mha.2_Intron	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	868	Helicase ATP-binding.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		AGGTCTTGAACACTCACTATG	0.522													30	83					9.80776e-20	1.14036e-19	0.006320	1	0	
C9orf46	55848	broad.mit.edu	37	9	5431897	5431897	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:5431897C>T	uc003zjc.2	-	3	285	c.81G>A	c.(79-81)CAG>CAA	p.Q27Q	C9orf46_uc003zjd.2_Silent_p.Q27Q	NM_018465	NP_060935	Q9HBL7	CI046_HUMAN	hypothetical protein LOC55848	27						integral to membrane				ovary(1)	1	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.00106)|Lung(218;0.125)		TAAAACATACCTGAAGTCGAG	0.303													8	43					0	0	0.006214	0	0	
LINGO2	158038	broad.mit.edu	37	9	27949741	27949741	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:27949741C>T	uc003zqu.1	-	2	1123	c.929G>A	c.(928-930)CGC>CAC	p.R310H	LINGO2_uc010mjf.1_Missense_Mutation_p.R310H|LINGO2_uc003zqv.1_Missense_Mutation_p.R310H	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	310	LRR 11.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		CTCAATGGTGCGAAGCTGGGC	0.527													9	120					0	0	0.006214	0	0	
DNAJB5	25822	broad.mit.edu	37	9	34993435	34993435	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:34993435G>C	uc003zvt.2	+	2	343	c.205G>C	c.(205-207)GAG>CAG	p.E69Q	DNAJB5_uc003zvs.2_Missense_Mutation_p.E103Q|DNAJB5_uc011los.1_Missense_Mutation_p.E141Q	NM_012266	NP_036398	O75953	DNJB5_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 5	69					protein folding|response to unfolded protein		heat shock protein binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(32;0.00575)			CCAGTATGGGGAGGAAGGTAA	0.562													52	96					0	0	0.014410	0	0	
FAM189A2	9413	broad.mit.edu	37	9	72006631	72006631	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:72006631G>A	uc010mon.1	+	11	1368	c.1264G>A	c.(1264-1266)GGG>AGG	p.G422R	FAM189A2_uc004ahg.2_Missense_Mutation_p.G422R|FAM189A2_uc010moo.1_Missense_Mutation_p.G159E	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	422						integral to membrane					0						CACACCAGCGGGGAGGCCCCG	0.677													8	52					0	0	0.004482	0	0	
PRUNE2	158471	broad.mit.edu	37	9	79270385	79270385	+	Silent	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:79270385G>T	uc010mpk.2	-	10	8434	c.8310C>A	c.(8308-8310)CCC>CCA	p.P2770P	PRUNE2_uc011lsk.1_Silent_p.P19P|PRUNE2_uc011lsl.1_Silent_p.P34P|PRUNE2_uc011lsm.1_Silent_p.P34P|PRUNE2_uc004akj.3_Silent_p.P223P|PRUNE2_uc010mpl.1_Silent_p.P223P	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2770					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CCTCTTCAAAGGGGATGTCCA	0.453													4	35					0.00909568	0.00927138	0.009096	1	0	
VPS13A	23230	broad.mit.edu	37	9	79824435	79824435	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:79824435G>A	uc004akr.2	+	6	742	c.482G>A	c.(481-483)CGT>CAT	p.R161H	VPS13A_uc004akp.3_Missense_Mutation_p.R161H|VPS13A_uc004akq.3_Missense_Mutation_p.R161H|VPS13A_uc004aks.2_Missense_Mutation_p.R161H	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	161			R -> H (in a colorectal cancer sample; somatic mutation).		Golgi to endosome transport|protein transport	intracellular	protein binding	p.R161H(1)		pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ATCCATATTCGTTATGAAGAT	0.274													3	28					0	0	0.004672	0	0	
OGN	4969	broad.mit.edu	37	9	95152246	95152246	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:95152246G>C	uc004asa.2	-	5	755	c.520C>G	c.(520-522)CTT>GTT	p.L174V	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|OGN_uc004asb.2_Missense_Mutation_p.L174V|OGN_uc011ltx.1_Missense_Mutation_p.L192V	NM_014057	NP_054776	P20774	MIME_HUMAN	osteoglycin preproprotein	174	LRR 3.					extracellular space|proteinaceous extracellular matrix	growth factor activity				0						TTTTCAGCAAGTGAAAGTTCT	0.333													43	56					0	0	0.009718	0	0	
LOC441455	441455	broad.mit.edu	37	9	99488863	99488863	+	RNA	SNP	A	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:99488863A>C	uc011luo.1	+	1		c.761A>C				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						TTGTGCATTGAGGCCCATGAG	0.527													16	17					0	0	0.003163	0	0	
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900351	112900351	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:112900351G>T	uc004bei.2	+	9	3415	c.3223G>T	c.(3223-3225)GCT>TCT	p.A1075S	PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.A843S|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.A843S|PALM2-AKAP2_uc004bel.1_Missense_Mutation_p.A653S|AKAP2_uc011lwi.1_Missense_Mutation_p.A701S|AKAP2_uc004bem.2_Missense_Mutation_p.A701S|PALM2-AKAP2_uc010mtw.1_Missense_Mutation_p.A661S|AKAP2_uc011lwj.1_Missense_Mutation_p.A612S|PALM2-AKAP2_uc004ben.2_Missense_Mutation_p.A612S	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	612							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GGAAGCTGAAGCTGCGGCTTT	0.512													11	46					1.61879e-10	1.8175e-10	0.013537	1	0	
OR1Q1	158131	broad.mit.edu	37	9	125377696	125377696	+	Missense_Mutation	SNP	G	A	A	rs138056123		TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:125377696G>A	uc011lyy.1	+	1	680	c.680G>A	c.(679-681)CGG>CAG	p.R227Q		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTGGTCCTCCGGATCCCCTCA	0.537													20	123					0	0	0.008871	0	0	
NEK6	10783	broad.mit.edu	37	9	127089678	127089678	+	Silent	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:127089678T>C	uc004bog.2	+	7	725	c.576T>C	c.(574-576)GGT>GGC	p.G192G	NEK6_uc004bof.2_Silent_p.G210G|NEK6_uc004boh.2_Silent_p.G226G|NEK6_uc010mwj.2_Silent_p.G145G|NEK6_uc010mwk.2_Silent_p.G192G|NEK6_uc004boi.2_Silent_p.G192G	NM_014397	NP_055212	Q9HC98	NEK6_HUMAN	NIMA-related kinase 6 isoform 2	192	Protein kinase.				apoptosis|cell division|chromosome segregation|mitosis|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of mitotic metaphase/anaphase transition	cytoplasm|nucleus	ATP binding|kinesin binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|kidney(1)	3						GTGACCTTGGTCTGGGCCGCT	0.632													22	182					0	0	0.003330	0	0	
OLFML2A	169611	broad.mit.edu	37	9	127572405	127572405	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:127572405T>C	uc004bov.2	+	8	1786	c.1673T>C	c.(1672-1674)CTC>CCC	p.L558P	OLFML2A_uc004bow.2_Missense_Mutation_p.L344P	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	558	Olfactomedin-like.										0						CCCGGCGATCTCTCCGTGCAC	0.662													23	35					0	0	0.014323	0	0	
SH2D3C	10044	broad.mit.edu	37	9	130507127	130507127	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:130507127G>A	uc004bsc.2	-	7	1658	c.1516C>T	c.(1516-1518)CGA>TGA	p.R506*	SH2D3C_uc010mxo.2_Nonsense_Mutation_p.R346*|SH2D3C_uc004bry.2_Nonsense_Mutation_p.R348*|SH2D3C_uc004brz.3_Nonsense_Mutation_p.R152*|SH2D3C_uc011mak.1_Nonsense_Mutation_p.R152*|SH2D3C_uc004bsa.2_Nonsense_Mutation_p.R349*|SH2D3C_uc004bsb.2_Nonsense_Mutation_p.R438*	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	506					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						GCCCACTCTCGGCTGCCACGC	0.642													68	125					0	0	0.014410	0	0	
GTF3C5	9328	broad.mit.edu	37	9	135926336	135926336	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:135926336G>A	uc004cci.3	+	4	1076	c.739G>A	c.(739-741)GAC>AAC	p.D247N	GTF3C5_uc010mzz.2_Missense_Mutation_p.D122N|GTF3C5_uc004ccj.3_Missense_Mutation_p.D247N	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	247						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		TAACCCCGTGGACCGGAAGGT	0.622													4	25					0	0	0.001168	0	0	
MAMDC4	158056	broad.mit.edu	37	9	139753255	139753255	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:139753255C>T	uc004cjs.2	+	23	2956	c.2906C>T	c.(2905-2907)CCA>CTA	p.P969L	MAMDC4_uc011mej.1_Missense_Mutation_p.P306L	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	1048	Extracellular (Potential).|MAM 6.				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		CCGGCCACCCCAGCCTCCTGC	0.567													4	27					0	0	0.001168	0	0	
CACNA1B	774	broad.mit.edu	37	9	140773521	140773521	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr9:140773521G>A	uc004cog.2	+	2	445	c.300G>A	c.(298-300)ATG>ATA	p.M100I	uc004cof.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	100	Helical; Name=S1 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCGAGTATATGATCCTGGCCA	0.637													7	25					0	0	0.001984	0	0	
MAGEB6	158809	broad.mit.edu	37	X	26212099	26212099	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:26212099C>T	uc004dbr.2	+	2	285	c.136C>T	c.(136-138)CGC>TGC	p.R46C	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	46	Ser-rich.							p.R46H(1)		ovary(3)	3						ATCCTCTTCTCGCGCTTGTCT	0.552													14	37					0	0	0.002450	0	0	
SYTL5	94122	broad.mit.edu	37	X	37961644	37961644	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:37961644A>T	uc004ddu.2	+	11	1646	c.1112A>T	c.(1111-1113)CAG>CTG	p.Q371L	SYTL5_uc004ddv.2_Missense_Mutation_p.Q371L|SYTL5_uc004ddx.2_Missense_Mutation_p.Q371L	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	371					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						GTGTCCTCGCAGTTATCTACA	0.403													21	21					0	0	0.003330	0	0	
MAGED1	9500	broad.mit.edu	37	X	51640305	51640305	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:51640305C>T	uc004dpm.2	+	5	1519	c.1424C>T	c.(1423-1425)GCA>GTA	p.A475V	MAGED1_uc004dpn.2_Missense_Mutation_p.A531V|MAGED1_uc004dpo.2_Missense_Mutation_p.A475V	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	475	MAGE.				apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					CCCTCCCAGGCAAATAAGTTG	0.418										Multiple Myeloma(10;0.10)			22	21					0	0	0.003330	0	0	
HEPH	9843	broad.mit.edu	37	X	65417541	65417541	+	Silent	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:65417541C>A	uc011moz.1	+	10	1587	c.1527C>A	c.(1525-1527)GGC>GGA	p.G509G	HEPH_uc004dwn.2_Silent_p.G509G|HEPH_uc004dwo.2_Silent_p.G239G|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Silent_p.G509G	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	506	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTTACCCTGGCTTGGTTGCCA	0.458													19	22					8.28177e-16	9.46883e-16	0.007413	1	0	
ZMYM3	9203	broad.mit.edu	37	X	70466474	70466474	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:70466474T>A	uc004dzh.1	-	14	2470	c.2383A>T	c.(2383-2385)ACC>TCC	p.T795S	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.T795S|ZMYM3_uc004dzj.1_Intron	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	795					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					TCCTCTGGGGTCCTCACTGTG	0.512													20	15					0	0	0.012319	0	0	
SLC16A2	6567	broad.mit.edu	37	X	73749163	73749163	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:73749163C>G	uc004ebt.2	+	5	1674	c.1508C>G	c.(1507-1509)ACC>AGC	p.T503S	SLC16A2_uc010nlr.1_Intron	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	429	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TTCTTCATCACCATCATGGCC	0.587													4	23					0	0	0.000602	0	0	
HDX	139324	broad.mit.edu	37	X	83576953	83576953	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:83576953C>A	uc004eek.1	-	10	2126	c.2017G>T	c.(2017-2019)GAT>TAT	p.D673Y	HDX_uc011mqv.1_Missense_Mutation_p.D673Y|HDX_uc004eel.1_Missense_Mutation_p.D615Y	NM_144657	NP_653258	Q7Z353	HDX_HUMAN	highly divergent homeobox	673						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)	2						AATGAGGTATCATCAGGCTCC	0.358													8	10					1.12685e-05	1.18561e-05	0.004482	1	0	
LOC643486	643486	broad.mit.edu	37	X	95592579	95592579	+	RNA	SNP	C	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:95592579C>A	uc010nmx.2	-	1		c.323G>T				NR_003539				Homo sapiens cDNA FLJ42288 fis, clone TLIVE2006236.												0						TCTATGGCTGCTTTTCTAAAT	0.398													9	48					3.09899e-07	3.31138e-07	0.004482	1	0	
TBC1D8B	54885	broad.mit.edu	37	X	106083920	106083920	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:106083920A>T	uc004emo.2	+	10	1690	c.1525A>T	c.(1525-1527)ACT>TCT	p.T509S	MORC4_uc004emp.3_Intron|TBC1D8B_uc004emn.2_Missense_Mutation_p.T509S	NM_017752	NP_060222	Q0IIM8	TBC8B_HUMAN	TBC1 domain family, member 8B (with GRAM domain)	509	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGACATGGCTACTAATCCTGA	0.373													43	46					0	0	0.014410	0	0	
THOC2	57187	broad.mit.edu	37	X	122820398	122820398	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:122820398C>G	uc004etu.2	-	8	800	c.768G>C	c.(766-768)CAG>CAC	p.Q256H	THOC2_uc011muh.1_Missense_Mutation_p.Q177H|THOC2_uc011mui.1_Missense_Mutation_p.Q141H	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	256					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TTTTCTTTACCTGGTAAAACT	0.284													19	27					0	0	0.008871	0	0	
THOC2	57187	broad.mit.edu	37	X	122829949	122829949	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:122829949G>C	uc004etu.2	-	7	555	c.523C>G	c.(523-525)CTG>GTG	p.L175V	THOC2_uc011muh.1_Missense_Mutation_p.L96V|THOC2_uc011mui.1_Missense_Mutation_p.L60V	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	175					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TCAGCAATCAGCTTGGCATAA	0.274													23	15					0	0	0.003330	0	0	
GPC4	2239	broad.mit.edu	37	X	132439865	132439865	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:132439865G>A	uc004exc.1	-	6	1302	c.1090C>T	c.(1090-1092)CGC>TGC	p.R364C	GPC4_uc011mvg.1_Missense_Mutation_p.R294C	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	364					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GGTCTGAAGCGAGCACTGAAG	0.552													120	106					0	0	0.014410	0	0	
MAMLD1	10046	broad.mit.edu	37	X	149638353	149638353	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:149638353C>T	uc004fee.1	+	3	584	c.508C>T	c.(508-510)CCG>TCG	p.P170S	MAMLD1_uc011mxt.1_Missense_Mutation_p.P132S|MAMLD1_uc011mxu.1_Missense_Mutation_p.P145S|MAMLD1_uc011mxv.1_Missense_Mutation_p.P145S|MAMLD1_uc011mxw.1_Missense_Mutation_p.P97S	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	170					male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					CAACAGCGTGCCGGCTGTAGA	0.483													51	38					0	0	0.014410	0	0	
PASD1	139135	broad.mit.edu	37	X	150832640	150832640	+	Silent	SNP	C	T	T			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:150832640C>T	uc004fev.3	+	11	1223	c.891C>T	c.(889-891)TAC>TAT	p.Y297Y		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	297						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ATCCATTGTACAGGGCAGACC	0.532													13	68					0	0	0.003163	0	0	
ATP2B3	492	broad.mit.edu	37	X	152818720	152818720	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:152818720G>A	uc004fht.1	+	11	2177	c.2051G>A	c.(2050-2052)CGG>CAG	p.R684Q	ATP2B3_uc004fhs.1_Missense_Mutation_p.R684Q	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	684	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GACCCTGTGCGGCCCGAGGTA	0.632													22	16					0	0	0.010504	0	0	
FLNA	2316	broad.mit.edu	37	X	153580566	153580566	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:153580566G>A	uc004fkk.2	-	41	7001	c.6752C>T	c.(6751-6753)GCT>GTT	p.A2251V	FLNA_uc004fki.2_Missense_Mutation_p.A294V|FLNA_uc011mzn.1_Missense_Mutation_p.A384V|FLNA_uc010nuu.1_Missense_Mutation_p.A2243V	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2251	Filamin 21.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCCAGCTTCAGCTCTCTCCAG	0.692													10	3					0	0	0.010729	0	0	
GAB3	139716	broad.mit.edu	37	X	153925470	153925470	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chrX:153925470T>C	uc004fmj.1	-	7	1409	c.1361A>G	c.(1360-1362)GAC>GGC	p.D454G	GAB3_uc004fmk.1_Missense_Mutation_p.D455G|GAB3_uc010nve.1_Missense_Mutation_p.D455G|GAB3_uc004fml.1_Missense_Mutation_p.D74G	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	454										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GTTTCTCAGGTCCAGAGGAGG	0.507													34	30					0	0	0.007835	0	0	
GBAP1	2630	broad.mit.edu	37	1	155187842	155187842	+	Splice_Site	DEL	T	-	-			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr1:155187842delT	uc001fjd.2	-	3	264	c.120_splice	c.e3-1	p.E40_splice	RAG1AP1_uc010pey.1_Intron|GBAP1_uc001fjf.3_Splice_Site_p.M1_splice|GBAP1_uc001fje.3_Splice_Site					SubName: Full=cDNA FLJ56170, highly similar to Glucosylceramidase (EC 3.2.1.45);												0						TGAAGGCACCTAGGGCAGGAA	0.552													2	4	---	---	---	---						.
GRIN2C	2905	broad.mit.edu	37	17	72848621	72848626	+	In_Frame_Del	DEL	GCGCGT	-	-			TCGA-CG-4437-01A-01D-1800-08	TCGA-CG-4437-10A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7af611a-7351-4fe8-b3b3-fabe89a44ea6	cd37ded9-4afc-410a-b58b-e20900435be4	g.chr17:72848621_72848626delGCGCGT	uc002jlt.1	-	3	680_685	c.524_529delACGCGC	c.(523-531)CACGCGCTC>CTC	p.HA175del	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_In_Frame_Del_p.HA175del|GRIN2C_uc002jlv.1_3'UTR	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	175_176	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	TCCAGGAAGAGCGCGTGGCCCGGGTG	0.714													4	6	---	---	---	---						.
