Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
KIAA1751	85452	broad.mit.edu	37	1	1919973	1919973	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:1919973C>A	uc001aim.1	-	4	430	c.274G>T	c.(274-276)GAG>TAG	p.E92*	KIAA1751_uc009vkz.1_Nonsense_Mutation_p.E92*|KIAA1751_uc001ain.1_Nonsense_Mutation_p.E92*	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	92										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GTGAAAAGCTCTTGCTCCTCA	0.562													19	58					1.33834e-09	1.4209e-09	1	1	0	
MORN1	79906	broad.mit.edu	37	1	2318864	2318864	+	Missense_Mutation	SNP	G	A	A	rs144594161	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:2318864G>A	uc001ajb.1	-	4	373	c.352C>T	c.(352-354)CGG>TGG	p.R118W	MORN1_uc009vld.2_Missense_Mutation_p.R94W|MORN1_uc001ajd.1_Missense_Mutation_p.R118W|MORN1_uc010nyy.1_Silent_p.C60C	NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	118	MORN 4.									ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		AGACCTTCCCGCATGCCGTGG	0.602													21	102					0	0	1	0	0	
SLC2A5	6518	broad.mit.edu	37	1	9118284	9118284	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:9118284G>A	uc001apo.2	-	2	351	c.59C>T	c.(58-60)GCA>GTA	p.A20V	SLC2A5_uc010nzz.1_Intron|SLC2A5_uc010oaa.1_5'UTR|SLC2A5_uc010oab.1_Missense_Mutation_p.A20V|SLC2A5_uc010oac.1_Missense_Mutation_p.A20V|SLC2A5_uc001app.3_Missense_Mutation_p.A20V	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	20	Helical; Name=1; (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TATCAGGGTTGCCAGGGCAAG	0.572													14	37					0	0	1	0	0	
NMNAT1	64802	broad.mit.edu	37	1	10032227	10032227	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:10032227G>A	uc001aqp.2	+	2	240	c.96G>A	c.(94-96)AAG>AAA	p.K32K		NM_022787	NP_073624	Q9HAN9	NMNA1_HUMAN	nicotinamide mononucleotide adenylyltransferase	32					water-soluble vitamin metabolic process	nucleoplasm	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity|protein binding				0		all_lung(284;0.000407)|Renal(390;0.000469)|Lung NSC(185;0.000577)|Colorectal(325;0.0062)|Breast(348;0.00686)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.31e-08)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(185;0.00028)|BRCA - Breast invasive adenocarcinoma(304;0.00032)|KIRC - Kidney renal clear cell carcinoma(229;0.00101)|STAD - Stomach adenocarcinoma(132;0.00908)|READ - Rectum adenocarcinoma(331;0.0419)		AGCTGGCCAAGGACTACATGA	0.363													48	146					0	0	1	0	0	
AADACL3	126767	broad.mit.edu	37	1	12779578	12779578	+	Silent	SNP	G	A	A	rs139336643	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:12779578G>A	uc009vnn.1	+	2	332	c.99G>A	c.(97-99)ACG>ACA	p.T33T	AADACL3_uc001aug.1_Intron	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	33							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TTGTGGTCACGGATTTCCGCT	0.512													33	116					0	0	1	0	0	
PRAMEF1	65121	broad.mit.edu	37	1	12853598	12853598	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:12853598T>C	uc001auj.1	+	2	325	c.222T>C	c.(220-222)CAT>CAC	p.H74H		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	74											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGACGCTTCATTTGGAGACCT	0.557													37	108					0	0	1	0	0	
LOC649330	649330	broad.mit.edu	37	1	12908041	12908041	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:12908041C>A	uc009vno.2	-	1	197	c.102G>T	c.(100-102)GAG>GAT	p.E34D	HNRNPCL1_uc010obf.1_Missense_Mutation_p.E34D	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	34							nucleic acid binding|nucleotide binding				0						AAAAGATCGCCTCCACATCCG	0.473													20	213					2.27731e-05	2.35911e-05	1	1	0	
TAS1R2	80834	broad.mit.edu	37	1	19166144	19166144	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:19166144C>T	uc001bba.1	-	6	2470	c.2469G>A	c.(2467-2469)ACG>ACA	p.T823T		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	823	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AGTAGGCGGGCGTGTTGCGCT	0.612													18	44					0	0	1	0	0	
UBR4	23352	broad.mit.edu	37	1	19423058	19423058	+	Missense_Mutation	SNP	C	T	T	rs142148172		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:19423058C>T	uc001bbi.2	-	92	13481	c.13477G>A	c.(13477-13479)GCA>ACA	p.A4493T	UBR4_uc010ocv.1_Missense_Mutation_p.A56T|UBR4_uc009vph.2_Missense_Mutation_p.A127T|UBR4_uc010ocw.1_Missense_Mutation_p.A157T|UBR4_uc001bbg.2_Missense_Mutation_p.A204T|UBR4_uc001bbh.2_Missense_Mutation_p.A202T	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4493					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CTGATCCCTGCGAGTCTGTTA	0.498													58	209					0	0	1	0	0	
HTR6	3362	broad.mit.edu	37	1	19992867	19992867	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:19992867C>A	uc001bcl.2	+	1	1088	c.621C>A	c.(619-621)ACC>ACA	p.T207T		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	207	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	TATGCTTCACCTACTGCAGGA	0.667													24	69					1.66031e-10	1.77332e-10	1	1	0	
UBXN11	91544	broad.mit.edu	37	1	26610635	26610635	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:26610635G>T	uc001blw.2	-	13	1348	c.1075C>A	c.(1075-1077)CAG>AAG	p.Q359K	UBXN11_uc001blz.1_Missense_Mutation_p.Q326K|UBXN11_uc001blv.2_Missense_Mutation_p.Q321K|UBXN11_uc001bly.2_Missense_Mutation_p.Q239K|UBXN11_uc001blx.2_Missense_Mutation_p.Q117K|UBXN11_uc001bma.2_Missense_Mutation_p.Q326K|UBXN11_uc001bmb.1_Missense_Mutation_p.Q359K	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	359						cytoplasm|cytoskeleton				ovary(1)	1						GGCCTCACCTGCAAGGTGTCC	0.577													48	144					1.54886e-18	1.70375e-18	1	1	0	
BAI2	576	broad.mit.edu	37	1	32207741	32207741	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:32207741G>A	uc001btn.2	-	8	1684	c.1330C>T	c.(1330-1332)CGG>TGG	p.R444W	BAI2_uc010ogo.1_Missense_Mutation_p.R86W|BAI2_uc010ogp.1_Missense_Mutation_p.R377W|BAI2_uc010ogq.1_Missense_Mutation_p.R444W|BAI2_uc001bto.2_Missense_Mutation_p.R444W|BAI2_uc001btq.1_Missense_Mutation_p.R377W|BAI2_uc010ogr.1_Missense_Mutation_p.R377W	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	444	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CTGCACTTCCGGCTGCGCTGT	0.667													16	43					0	0	1	0	0	
CSMD2	114784	broad.mit.edu	37	1	34238278	34238278	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:34238278C>T	uc001bxn.1	-	13	1647	c.1618G>A	c.(1618-1620)GGT>AGT	p.G540S	CSMD2_uc001bxm.1_Missense_Mutation_p.G580S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	540	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGTGTGTCACCGTGGTGAAAC	0.542													33	90					0	0	1	0	0	
CSMD2	114784	broad.mit.edu	37	1	34401395	34401395	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:34401395G>A	uc001bxn.1	-	4	587	c.558C>T	c.(556-558)AGC>AGT	p.S186S	CSMD2_uc001bxm.1_Silent_p.S226S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	186	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCACGTGGCGCTGTTCTCAG	0.632													21	48					0	0	1	0	0	
COL9A2	1298	broad.mit.edu	37	1	40775807	40775807	+	Silent	SNP	G	A	A	rs150444024	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:40775807G>A	uc001cfh.1	-	15	838	c.768C>T	c.(766-768)GGC>GGT	p.G256G	COL9A2_uc001cfi.1_Silent_p.G75G	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	256	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			CACCGATAGCGCCCACCATGC	0.617													38	84					0	0	1	0	0	
HIVEP3	59269	broad.mit.edu	37	1	42045430	42045430	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:42045430G>A	uc001cgz.3	-	4	6252	c.5039C>T	c.(5038-5040)TCC>TTC	p.S1680F	HIVEP3_uc001cha.3_Missense_Mutation_p.S1680F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1680					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGCTTGCGGGAGCTGGATGG	0.512													19	68					0	0	1	0	0	
ZNF691	51058	broad.mit.edu	37	1	43317170	43317170	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:43317170G>A	uc001cih.2	+	2	673	c.622G>A	c.(622-624)GCC>ACC	p.A208T	ZNF691_uc001cig.2_Missense_Mutation_p.A181T|ZNF691_uc009vwm.2_Missense_Mutation_p.A201T	NM_015911	NP_056995	Q5VV52	ZN691_HUMAN	zinc finger protein 691	212	C2H2-type 4.					nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CAGCCAGAGTGCCACGCTAGC	0.602													19	64					0	0	1	0	0	
PTPRF	5792	broad.mit.edu	37	1	44069448	44069448	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:44069448G>A	uc001cjr.2	+	16	2965	c.2625G>A	c.(2623-2625)CAG>CAA	p.Q875Q	PTPRF_uc001cjs.2_Silent_p.Q866Q|PTPRF_uc001cju.2_Intron|PTPRF_uc009vwt.2_Silent_p.Q435Q|PTPRF_uc001cjv.2_Silent_p.Q335Q|PTPRF_uc001cjw.2_Silent_p.Q101Q	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	875	Extracellular (Potential).|Fibronectin type-III 6.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGATGACCAGCACTTCACAG	0.622													16	72					0	0	1	0	0	
TMEM53	79639	broad.mit.edu	37	1	45120567	45120567	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:45120567G>A	uc001cmc.2	-	3	534	c.498C>T	c.(496-498)GCC>GCT	p.A166A	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Silent_p.A93A|TMEM53_uc009vxh.1_Silent_p.A49A|TMEM53_uc010ola.1_Silent_p.A49A	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	166						integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					GCAGCATGGCGGCCCGGCGCT	0.662													12	34					0	0	1	0	0	
PTCH2	8643	broad.mit.edu	37	1	45292983	45292983	+	Splice_Site	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:45292983T>C	uc010olf.1	-	16	2384	c.2372_splice	c.e16-1	p.G791_splice	PTCH2_uc010olg.1_Splice_Site_p.G489_splice	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2						protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CCTGGATTCCTGGGGGAGACC	0.642									Basal_Cell_Nevus_syndrome				28	90					0	0	1	0	0	
CYP4B1	1580	broad.mit.edu	37	1	47279636	47279636	+	Missense_Mutation	SNP	C	T	T	rs144659997	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:47279636C>T	uc001cqm.3	+	6	757	c.673C>T	c.(673-675)CGC>TGC	p.R225C	CYP4B1_uc009vyl.1_Missense_Mutation_p.R62C|CYP4B1_uc001cqn.3_Missense_Mutation_p.R226C|CYP4B1_uc009vym.2_Missense_Mutation_p.R211C|CYP4B1_uc010omk.1_Missense_Mutation_p.R62C|CYP4B1_uc010oml.1_Missense_Mutation_p.R63C	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	225					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GATGCAGCAGCGCCTTGTGTC	0.582													32	145					0	0	1	0	0	
SLC5A9	200010	broad.mit.edu	37	1	48701406	48701406	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:48701406C>T	uc001cro.2	+	10	1199	c.1147C>T	c.(1147-1149)CGG>TGG	p.R383W	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Missense_Mutation_p.R408W|SLC5A9_uc010omt.1_Missense_Mutation_p.R397W|SLC5A9_uc001crp.2_Missense_Mutation_p.R50W|SLC5A9_uc010omu.1_Missense_Mutation_p.R50W	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	383	Extracellular (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						CCCAGGTCTGCGGGGGCTGAT	0.582													12	34					0	0	1	0	0	
DNAJC6	9829	broad.mit.edu	37	1	65852598	65852598	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:65852598C>T	uc001dcd.1	+	8	1092	c.928C>T	c.(928-930)CGG>TGG	p.R310W	DNAJC6_uc001dcc.1_Missense_Mutation_p.R341W|DNAJC6_uc010opc.1_Missense_Mutation_p.R297W|DNAJC6_uc001dce.1_Missense_Mutation_p.R367W	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	310	C2 tensin-type.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						CATTGGGAGCCGGCTACAGGC	0.428													27	80					0	0	1	0	0	
IL23R	149233	broad.mit.edu	37	1	67724745	67724745	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:67724745T>C	uc001ddo.2	+	11	1909	c.1824T>C	c.(1822-1824)ATT>ATC	p.I608I	IL23R_uc009waz.2_Silent_p.I405I|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_Silent_p.I206I|IL23R_uc010opk.1_3'UTR|IL23R_uc010opl.1_Silent_p.I190I|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_Silent_p.I354I|IL23R_uc010opn.1_Silent_p.I453I|IL23R_uc001ddr.2_RNA|IL23R_uc010ops.1_Silent_p.I405I|IL23R_uc010opt.1_Silent_p.I249I|IL23R_uc010opu.1_Silent_p.I304I|IL23R_uc010opv.1_Silent_p.I366I|IL23R_uc010opw.1_Silent_p.I243I|IL23R_uc010opx.1_Silent_p.I249I|IL23R_uc010opy.1_Silent_p.I375I|IL23R_uc010opz.1_Silent_p.I249I|IL23R_uc010oqa.1_Silent_p.I249I|IL23R_uc010oqb.1_Silent_p.I437I|IL23R_uc010oqc.1_Silent_p.I324I|IL23R_uc010oqd.1_Silent_p.I243I|IL23R_uc010oqe.1_Silent_p.I206I|IL23R_uc010oqf.1_Silent_p.I206I|IL23R_uc010oqg.1_Silent_p.I206I|IL23R_uc010oqh.1_Silent_p.I249I|IL23R_uc001dds.2_Silent_p.I353I|IL23R_uc001ddt.2_Silent_p.I206I	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	608	Cytoplasmic (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						TGCCATCTATTAATACTTATT	0.388													18	61					0	0	1	0	0	
HHLA3	11147	broad.mit.edu	37	1	70820683	70820683	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:70820683C>T	uc001dfa.2	+	1	191	c.49C>T	c.(49-51)CCT>TCT	p.P17S	ANKRD13C_uc001dex.3_5'Flank|ANKRD13C_uc009wbk.2_5'Flank|ANKRD13C_uc001dey.3_5'Flank|HHLA3_uc010oqp.1_RNA|HHLA3_uc001dfb.2_Missense_Mutation_p.P17S|HHLA3_uc001dfc.2_Missense_Mutation_p.P17S	NM_001036645	NP_001031722	Q9XRX5	HHLA3_HUMAN	HERV-H LTR-associating 3 isoform 2	17							protein binding				0						CGGATCTGAGCCTCCCGCAGA	0.468													5	46					0	0	1	0	0	
LRRIQ3	127255	broad.mit.edu	37	1	74648472	74648472	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:74648472C>A	uc001dfy.3	-	3	515	c.323G>T	c.(322-324)GGG>GTG	p.G108V	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	108	LRR 3.									ovary(2)	2						CTTTGCAAACCCATTGTCATG	0.313													12	35					0.0167234	0.0169136	1	1	0	
SSX2IP	117178	broad.mit.edu	37	1	85136860	85136860	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:85136860C>A	uc001dkh.2	-	3	318	c.43G>T	c.(43-45)GAA>TAA	p.E15*	SSX2IP_uc001dkf.2_5'Flank|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Intron|SSX2IP_uc001dki.2_Nonsense_Mutation_p.E15*|SSX2IP_uc010osa.1_Intron|SSX2IP_uc001dkj.2_Nonsense_Mutation_p.E15*|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Intron	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	15					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		ACTTAATTACCTGAAGACAGA	0.343													11	52					5.16669e-11	5.54613e-11	1	1	0	
CLCA4	22802	broad.mit.edu	37	1	87025638	87025638	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:87025638G>A	uc009wcs.2	+	2	227	c.183G>A	c.(181-183)ACG>ACA	p.T61T	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_5'UTR	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	61						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CAGCTTCTACGTACCTGTTTG	0.348													36	122					0	0	1	0	0	
CLCA4	22802	broad.mit.edu	37	1	87043755	87043755	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:87043755G>A	uc009wcs.2	+	12	2166	c.2122G>A	c.(2122-2124)GGG>AGG	p.G708R	CLCA4_uc009wct.2_Missense_Mutation_p.G471R|CLCA4_uc009wcu.2_Missense_Mutation_p.G528R	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	708						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GGTAGTGAACGGTGAGTAACT	0.388													5	21					0	0	1	0	0	
BTBD8	284697	broad.mit.edu	37	1	92568203	92568203	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:92568203G>T	uc001doo.2	+	3	788	c.521G>T	c.(520-522)AGA>ATA	p.R174I	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	174						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		ATCAGTGACAGAGATGATGAT	0.333													12	49					0.000978159	0.000999708	1	1	0	
ABCA4	24	broad.mit.edu	37	1	94520763	94520763	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:94520763C>A	uc001dqh.2	-	16	2595	c.2491G>T	c.(2491-2493)GGG>TGG	p.G831W	ABCA4_uc010otn.1_Missense_Mutation_p.G757W	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	831					phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AATTCGTCCCCTTCCGTGGGA	0.537													29	60					2.14196e-07	2.25169e-07	1	1	0	
LPPR4	9890	broad.mit.edu	37	1	99771242	99771242	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:99771242G>A	uc001dse.2	+	7	1074	c.968G>A	c.(967-969)GGC>GAC	p.G323D	LPPR4_uc010oue.1_Missense_Mutation_p.G265D	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	323	Helical; (Potential).						phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AAACACTAGGGCTTGTATGCT	0.453													4	70					0	0	1	0	0	
ATXN7L2	127002	broad.mit.edu	37	1	110033760	110033760	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:110033760C>T	uc001dxr.2	+	10	1590	c.1575C>T	c.(1573-1575)TGC>TGT	p.C525C	ATXN7L2_uc001dxs.2_Silent_p.C152C|ATXN7L2_uc001dxt.2_Silent_p.C28C|CYB561D1_uc010ovl.1_5'Flank|CYB561D1_uc010ovm.1_5'Flank|CYB561D1_uc001dxu.2_5'Flank|CYB561D1_uc001dxw.2_5'Flank|CYB561D1_uc010ovn.1_5'Flank|CYB561D1_uc010ovo.1_5'Flank|CYB561D1_uc009wfd.2_5'Flank|CYB561D1_uc010ovp.1_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	525										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		AGGCAGAGTGCATGGGCGGGA	0.657											OREG0013635	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	41					0	0	1	0	0	
GPR61	83873	broad.mit.edu	37	1	110086193	110086193	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:110086193C>A	uc001dxy.2	+	2	1232	c.549C>A	c.(547-549)TCC>TCA	p.S183S		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	183	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		GAAGGGTCTCCTGGGAGGAAG	0.607													4	73					0.150653	0.151078	1	1	0	
KCNC4	3749	broad.mit.edu	37	1	110765765	110765765	+	Silent	SNP	C	T	T	rs151032487		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:110765765C>T	uc001dzh.2	+	2	915	c.858C>T	c.(856-858)GGC>GGT	p.G286G	KCNC4_uc001dzf.2_Silent_p.G286G|KCNC4_uc009wfr.2_Silent_p.G286G|KCNC4_uc001dzg.2_Silent_p.G286G|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	286	Helical; Name=Segment S2; (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		ACATCGAGGGCGTATGTGTGC	0.582													44	123					0	0	1	0	0	
RBM15	64783	broad.mit.edu	37	1	110882916	110882916	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:110882916G>T	uc001dzl.1	+	1	972	c.889G>T	c.(889-891)GGC>TGC	p.G297C	RBM15_uc001dzm.1_Missense_Mutation_p.G297C|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	297					interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		TTCCCCTGGTGGCGCTGCTTT	0.627			T	MKL1	acute megakaryocytic leukemia								38	119					2.24893e-16	2.4561e-16	1	1	0	
WNT2B	7482	broad.mit.edu	37	1	113052050	113052050	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:113052050G>A	uc001ecb.2	+	1	681	c.166G>A	c.(166-168)GTA>ATA	p.V56I	WNT2B_uc001eca.2_Intron|WNT2B_uc009wgg.2_Intron	NM_024494	NP_078613	Q93097	WNT2B_HUMAN	wingless-type MMTV integration site family,	56					chondrocyte differentiation|cornea development in camera-type eye|dorsal/ventral axis specification|forebrain regionalization|hemopoietic stem cell proliferation|iris morphogenesis|lens development in camera-type eye|lung induction|male gonad development|neuron differentiation|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding|signal transducer activity			ovary(2)|breast(2)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;7.31e-07)|all_epithelial(167;4.59e-06)|all_lung(203;2.56e-05)|Lung NSC(69;4.38e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCCGGCCCGCGTAGACACGTC	0.721													22	40					0	0	1	0	0	
NOTCH2	4853	broad.mit.edu	37	1	120493447	120493447	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:120493447C>A	uc001eik.2	-	15	2635	c.2379G>T	c.(2377-2379)CAG>CAT	p.Q793H	NOTCH2_uc001eil.2_Missense_Mutation_p.Q793H|NOTCH2_uc001eim.3_Missense_Mutation_p.Q710H	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	793	Extracellular (Potential).|EGF-like 20; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAATATTCACCTGGCAGTTAT	0.408			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				40	110					1.465e-08	1.55075e-08	1	1	0	
PDE4DIP	9659	broad.mit.edu	37	1	144922001	144922001	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:144922001T>A	uc001elw.3	-	9	1319	c.1028A>T	c.(1027-1029)GAT>GTT	p.D343V	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.D409V|PDE4DIP_uc001emc.1_Missense_Mutation_p.D343V|PDE4DIP_uc001emd.1_Missense_Mutation_p.D343V|PDE4DIP_uc001emb.1_Missense_Mutation_p.D506V|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.D130V	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	343					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ACTCTGAAGATCAAGCAGAGC	0.493			T	PDGFRB	MPD								26	206					0	0	1	0	0	
HFE2	148738	broad.mit.edu	37	1	145415461	145415461	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:145415461G>A	uc001eni.2	+	3	605	c.280G>A	c.(280-282)GCC>ACC	p.A94T	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_5'UTR|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	94					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TCGGCGCACCGCCCGCACCTG	0.692													18	88					0	0	1	0	0	
TMOD4	29765	broad.mit.edu	37	1	151145996	151145996	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:151145996C>T	uc001exc.3	-	4	566	c.376G>A	c.(376-378)GCT>ACT	p.A126T	TMOD4_uc001exb.2_5'Flank|TMOD4_uc001exd.2_RNA|TMOD4_uc010pct.1_Intron	NM_013353	NP_037485	Q9NZQ9	TMOD4_HUMAN	tropomodulin 4 (muscle)	126					muscle contraction	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CACATTTCAGCATCTGTGGCA	0.547													35	118					0	0	1	0	0	
TDRKH	11022	broad.mit.edu	37	1	151753980	151753980	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:151753980G>A	uc009wnb.1	-	3	390	c.208C>T	c.(208-210)CGG>TGG	p.R70W	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.R70W|TDRKH_uc001ezc.3_Missense_Mutation_p.R70W|TDRKH_uc001eza.3_Missense_Mutation_p.R70W|TDRKH_uc001ezd.3_Missense_Mutation_p.R70W|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	70	KH 1.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCTCCTTGCCGGCCAATGATG	0.463													22	58					0	0	1	0	0	
LINGO4	339398	broad.mit.edu	37	1	151774063	151774063	+	Missense_Mutation	SNP	C	T	T	rs142939659		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:151774063C>T	uc001ezf.1	-	2	1308	c.1118G>A	c.(1117-1119)CGC>CAC	p.R373H		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	373	Extracellular (Potential).|LRRCT.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAGGTGGCGGCGGAGCCGGAG	0.617													21	45					0	0	1	0	0	
TCHH	7062	broad.mit.edu	37	1	152081442	152081442	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:152081442G>A	uc001ezp.2	-	2	4251	c.4251C>T	c.(4249-4251)CGC>CGT	p.R1417R	TCHH_uc009wne.1_Silent_p.R1417R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1417	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTCCTCCTCGCGGAATTTTC	0.587													34	108					0	0	1	0	0	
RUSC1	23623	broad.mit.edu	37	1	155291940	155291940	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:155291940C>A	uc001fkj.2	+	2	605	c.376C>A	c.(376-378)CTC>ATC	p.L126I	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Missense_Mutation_p.L126I|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	126						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			CTTGCGGGACCTCCCTGGTGA	0.647													14	60					1.99824e-07	2.10268e-07	1	1	0	
YY1AP1	55249	broad.mit.edu	37	1	155630355	155630355	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:155630355C>T	uc001fln.2	-	11	1508	c.1484G>A	c.(1483-1485)CGG>CAG	p.R495Q	YY1AP1_uc001flg.2_Missense_Mutation_p.R234Q|YY1AP1_uc010pgg.1_Missense_Mutation_p.R334Q|YY1AP1_uc010pgh.1_Missense_Mutation_p.R438Q|YY1AP1_uc010pgi.1_Missense_Mutation_p.R587Q|YY1AP1_uc001flh.2_Missense_Mutation_p.R567Q|YY1AP1_uc009wqt.2_Missense_Mutation_p.R418Q|YY1AP1_uc001flk.2_Missense_Mutation_p.R438Q|YY1AP1_uc001fll.2_Missense_Mutation_p.R449Q|YY1AP1_uc009wqv.2_Missense_Mutation_p.R166Q|YY1AP1_uc001flm.2_Missense_Mutation_p.R438Q|YY1AP1_uc001fli.2_Missense_Mutation_p.R449Q|YY1AP1_uc009wqu.2_Missense_Mutation_p.R282Q|YY1AP1_uc001flj.2_Missense_Mutation_p.R429Q|YY1AP1_uc009wqw.2_Missense_Mutation_p.R418Q|YY1AP1_uc001flo.2_Missense_Mutation_p.R383Q|YY1AP1_uc001flp.2_Missense_Mutation_p.R449Q|YY1AP1_uc010pgj.1_3'UTR	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	495					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GTGAGGAATCCGGAGCACCAT	0.552													21	78					0	0	1	0	0	
NES	10763	broad.mit.edu	37	1	156639679	156639679	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:156639679G>T	uc001fpq.2	-	4	4434	c.4301C>A	c.(4300-4302)GCT>GAT	p.A1434D		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1434	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCACCGCCCAGCCCCTGGctc	0.458													12	23					1.08611e-07	1.14514e-07	1	1	0	
FCRL3	115352	broad.mit.edu	37	1	157660199	157660199	+	Silent	SNP	G	A	A	rs141302640		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:157660199G>A	uc001frb.2	-	9	1828	c.1536C>T	c.(1534-1536)CAC>CAT	p.H512H	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.H512H|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.H238H|FCRL3_uc001frc.1_Silent_p.H512H	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	512	Ig-like C2-type 6.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TGTCATCCTCGTGATAAAACC	0.582													17	82					0	0	1	0	0	
FCRL3	115352	broad.mit.edu	37	1	157665355	157665355	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:157665355G>C	uc001frb.2	-	8	1467	c.1175C>G	c.(1174-1176)GCC>GGC	p.A392G	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.A392G|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.A118G|FCRL3_uc001frc.1_Missense_Mutation_p.A392G	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	392	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CACAGTGTGGGCCCTGGGAGC	0.572													17	55					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158647573	158647573	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:158647573G>T	uc001fst.1	-	7	1063	c.864C>A	c.(862-864)ACC>ACA	p.T288T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	288	Spectrin 4.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGTCCTCAGAGGTGAGTACAG	0.463													23	70					1.26454e-06	1.32022e-06	1	1	0	
MNDA	4332	broad.mit.edu	37	1	158813189	158813189	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:158813189G>T	uc001fsz.1	+	3	586	c.386G>T	c.(385-387)AGG>ATG	p.R129M		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	129					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					GCAAGAGGGAGGATTCCTGTA	0.473													4	18					1.23904e-05	1.2848e-05	1	1	0	
PYHIN1	149628	broad.mit.edu	37	1	158914815	158914815	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:158914815A>G	uc001ftb.2	+	7	1587	c.1342A>G	c.(1342-1344)AGC>GGC	p.S448G	PYHIN1_uc001ftc.2_Missense_Mutation_p.S439G|PYHIN1_uc001ftd.2_Missense_Mutation_p.S448G|PYHIN1_uc001fte.2_Missense_Mutation_p.S439G	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	448					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AACCCCATCCAGCAGTTCCTT	0.458													10	137					0	0	1	0	0	
IGSF9	57549	broad.mit.edu	37	1	159900491	159900491	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:159900491C>A	uc001fur.2	-	14	2002	c.1804G>T	c.(1804-1806)GCT>TCT	p.A602S	IGSF9_uc001fuq.2_Missense_Mutation_p.A586S|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	602	Fibronectin type-III 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CCTTCCGGAGCAGACAAGACG	0.607													14	57					0.00185496	0.00189039	1	1	0	
FCGR2A	2212	broad.mit.edu	37	1	161487843	161487843	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:161487843G>A	uc001gan.2	+	7	912	c.859G>A	c.(859-861)GGC>AGC	p.G287S	FCGR2A_uc001gam.2_Missense_Mutation_p.G286S|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	287	Cytoplasmic (Potential).					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	AGCTGACGGCGGCTACATGAC	0.299													25	110					0	0	1	0	0	
SH2D1B	117157	broad.mit.edu	37	1	162372593	162372593	+	Splice_Site	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:162372593C>A	uc001gbz.1	-	2	257	c.135_splice	c.e2-1	p.S45_splice	SH2D1B_uc001gca.1_Splice_Site_p.S45_splice	NM_053282	NP_444512	O14796	SH21B_HUMAN	SH2 domain containing 1B											pancreas(1)	1	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			ATTTTTAAACCTGTGGAAAAA	0.343													15	35					6.94344e-10	7.39387e-10	1	1	0	
GPA33	10223	broad.mit.edu	37	1	167024308	167024308	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:167024308G>A	uc001gea.1	-	6	1076	c.732C>T	c.(730-732)GGC>GGT	p.G244G		NM_005814	NP_005805	Q99795	GPA33_HUMAN	transmembrane glycoprotein A33 precursor	244	Helical; (Potential).					integral to plasma membrane	receptor activity				0						CTGCAACCACGCCCACCGCGA	0.582													16	58					0	0	1	0	0	
SLC19A2	10560	broad.mit.edu	37	1	169446634	169446634	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:169446634C>T	uc001gge.3	-	2	770	c.566G>A	c.(565-567)AGC>AAC	p.S189N	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	189	Extracellular (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					GACATTCAGGCTGAACAGCGA	0.493													16	48					0	0	1	0	0	
BAT2L2	23215	broad.mit.edu	37	1	171504578	171504578	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:171504578G>A	uc010pmg.1	+	13	2145	c.1879G>A	c.(1879-1881)GTT>ATT	p.V627I		NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	627	Glu-rich.						protein C-terminus binding				0						GGAGGAACCCGTTTTCACTAG	0.423													11	40					0	0	1	0	0	
PIGC	5279	broad.mit.edu	37	1	172411046	172411046	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:172411046G>A	uc001gil.2	-	2	998	c.717C>T	c.(715-717)GCC>GCT	p.A239A	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Silent_p.A239A|PIGC_uc001gio.2_Silent_p.A239A	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	239	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						GGCCTCCCACGGCTGAAAATG	0.507													19	66					0	0	1	0	0	
CACNA1E	777	broad.mit.edu	37	1	181620522	181620522	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:181620522C>A	uc001gow.2	+	7	1165	c.1000C>A	c.(1000-1002)CTC>ATC	p.L334I	CACNA1E_uc009wxr.2_Missense_Mutation_p.L241I|CACNA1E_uc009wxs.2_Missense_Mutation_p.L241I	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	334	I.|Helical; Name=S6 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTTCATCCCCCTCATCATCAT	0.433													5	93					0.0215528	0.0217361	1	1	0	
GLUL	2752	broad.mit.edu	37	1	182353567	182353567	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:182353567G>A	uc001gpa.1	-	7	1307	c.1095C>T	c.(1093-1095)GGC>GGT	p.G365G	GLUL_uc010pnt.1_Silent_p.G152G|GLUL_uc001gpb.1_Silent_p.G365G|GLUL_uc001gpc.1_Silent_p.G365G|GLUL_uc001gpd.1_Silent_p.G365G	NM_001033056	NP_001028228	P15104	GLNA_HUMAN	glutamine synthetase	365					cell proliferation|glutamine biosynthetic process|neurotransmitter uptake	cytosol|Golgi apparatus|mitochondrion	ATP binding|glutamate decarboxylase activity|glutamate-ammonia ligase activity|identical protein binding				0					Asparaginase(DB00023)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)|L-Methionine(DB00134)	AGGGCTCATCGCCGGTTTCAT	0.527													11	27					0	0	1	0	0	
DHX9	1660	broad.mit.edu	37	1	182856560	182856560	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:182856560C>T	uc001gpr.2	+	28	3967	c.3804C>T	c.(3802-3804)GGC>GGT	p.G1268G	DHX9_uc001gps.2_Silent_p.G1054G|DHX9_uc001gpt.2_Silent_p.G547G|DHX9_uc009wyd.2_Silent_p.G233G	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	1268				FGQGRGGGGY -> LDIEEEVAAIKLGYVSSVCRQ (in Ref. 1; AAB48855).	CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						GAGGAGGTGGCGGCTATTAAA	0.493													9	19					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186030998	186030998	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:186030998G>A	uc001grq.1	+	47	7557	c.7328G>A	c.(7327-7329)CGG>CAG	p.R2443Q		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2443	Ig-like C2-type 22.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGGATGCTACGGCTGATGCAG	0.398													10	53					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186105833	186105833	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:186105833C>T	uc001grq.1	+	87	13575	c.13346C>T	c.(13345-13347)ACT>ATT	p.T4449I	HMCN1_uc001grs.1_Missense_Mutation_p.T18I	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4449	Ig-like C2-type 44.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCAGTGGAAACTGTTATTAAT	0.408													14	71					0	0	1	0	0	
TPR	7175	broad.mit.edu	37	1	186310500	186310500	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:186310500G>A	uc001grv.2	-	28	4069	c.3772C>T	c.(3772-3774)CAG>TAG	p.Q1258*		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1258	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TCTTCATGCTGAGCCATTGTT	0.348			T	NTRK1	papillary thyroid								4	36					0	0	1	0	0	
FAM58B	339521	broad.mit.edu	37	1	200183336	200183336	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:200183336C>T	uc009wzi.1	+	1	681	c.645C>T	c.(643-645)GTC>GTT	p.V215V		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	215					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CCGCCGAGGTCGAGGCTGAGA	0.557													17	57					0	0	1	0	0	
PKP1	5317	broad.mit.edu	37	1	201286806	201286806	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:201286806G>T	uc001gwd.2	+	5	1204	c.953G>T	c.(952-954)AGC>ATC	p.S318I	PKP1_uc001gwe.2_Missense_Mutation_p.S318I|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	318	ARM 3.				cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						GTGTTCAGGAGCACCACCAAC	0.652													16	37					6.72482e-11	7.2042e-11	1	1	0	
LAD1	3898	broad.mit.edu	37	1	201351409	201351409	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:201351409G>A	uc001gwm.2	-	9	1754	c.1519C>T	c.(1519-1521)CAG>TAG	p.Q507*		NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	507						basement membrane	structural molecule activity				0						TCAGATTTCTGTCCCCACTGA	0.602													21	106					0	0	1	0	0	
DSTYK	25778	broad.mit.edu	37	1	205138544	205138544	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:205138544A>G	uc001hbw.2	-	3	1135	c.1071T>C	c.(1069-1071)GAT>GAC	p.D357D	DSTYK_uc001hbx.2_Silent_p.D357D|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	357						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						CCTTGGCTGCATCCACCAGGC	0.517													17	62					0	0	1	0	0	
PTPN14	5784	broad.mit.edu	37	1	214542949	214542949	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:214542949G>C	uc001hkk.1	-	17	3393	c.3122C>G	c.(3121-3123)ACC>AGC	p.T1041S		NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	1041	Tyrosine-protein phosphatase.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		AAACTTCGTGGTGACCTTGAA	0.478													55	200					0	0	1	0	0	
PTPN14	5784	broad.mit.edu	37	1	214638021	214638021	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:214638021T>C	uc001hkk.1	-	2	397	c.126A>G	c.(124-126)ACA>ACG	p.T42T	PTPN14_uc010pty.1_Intron	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	42	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		ATTCTTGCCCTGTGCTTTCCA	0.587													20	40					0	0	1	0	0	
MARK1	4139	broad.mit.edu	37	1	220791774	220791774	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:220791774C>T	uc001hmn.3	+	8	1272	c.675C>T	c.(673-675)CCC>CCT	p.P225P	MARK1_uc009xdw.2_Silent_p.P225P|MARK1_uc010pun.1_Silent_p.P225P|MARK1_uc001hmm.3_Silent_p.P203P	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	225	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		ATGCTGCTCCCGAGCTTTTCC	0.428													19	50					0	0	1	0	0	
DISP1	84976	broad.mit.edu	37	1	223116452	223116452	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:223116452G>C	uc001hnu.1	+	2	434	c.287G>C	c.(286-288)AGT>ACT	p.S96T		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	96					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AGCCATAGCAGTCACCAAGAG	0.522													5	127					0	0	1	0	0	
DNAH14	127602	broad.mit.edu	37	1	225152272	225152272	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:225152272C>T	uc001how.2	+	5	674	c.459C>T	c.(457-459)TAC>TAT	p.Y153Y	DNAH14_uc001hou.3_Silent_p.Y153Y|DNAH14_uc001hot.3_Silent_p.Y153Y|DNAH14_uc001hov.3_Silent_p.Y153Y	NM_001373	NP_001364	Q0VDD8	DYH14_HUMAN	dynein, axonemal, heavy polypeptide 14 isoform	280					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1						GTTTGAAATACGGAAGCTCCA	0.259													22	92					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228404781	228404781	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:228404781G>A	uc009xez.1	+	8	2489	c.2445G>A	c.(2443-2445)GCG>GCA	p.A815A	OBSCN_uc001hsn.2_Silent_p.A815A	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	815	Ig-like 8.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGGCCCGGCGCAGTTTGAGT	0.647													17	31					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228476477	228476477	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:228476477G>A	uc009xez.1	+	38	10271	c.10227G>A	c.(10225-10227)AGG>AGA	p.R3409R	OBSCN_uc001hsn.2_Silent_p.R3409R|OBSCN_uc001hsq.1_Silent_p.R665R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3409	Ig-like 34.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ATAGCCTGAGGCAGGACGGGG	0.657													34	52					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232629283	232629283	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:232629283C>A	uc001hvg.2	-	2	1765	c.1607G>T	c.(1606-1608)AGG>ATG	p.R536M		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	536					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CTCACTTGTCCTGAAAGCCAC	0.468													81	269					1.39294e-53	1.5498e-53	1	1	0	
HEATR1	55127	broad.mit.edu	37	1	236755385	236755385	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:236755385A>T	uc001hyd.1	-	11	1455	c.1330T>A	c.(1330-1332)TTA>ATA	p.L444I		NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	444					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TGTTCCTCTAATACAACATCT	0.318													15	56					0	0	1	0	0	
OR1C1	26188	broad.mit.edu	37	1	247921546	247921546	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:247921546G>A	uc010pza.1	-	1	163	c.163C>T	c.(163-165)CTC>TTC	p.L55F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGGGAATGGAGGTGAGAGTCA	0.473													10	26					0	0	1	0	0	
OR2L2	26246	broad.mit.edu	37	1	248202124	248202124	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:248202124G>A	uc001idw.2	+	1	651	c.555G>A	c.(553-555)ACG>ACA	p.T185T	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CTATGTTGACGCTAGCCTGCA	0.448													51	231					0	0	1	0	0	
UCN3	114131	broad.mit.edu	37	10	5415694	5415694	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:5415694C>T	uc001ihx.1	+	2	235	c.11C>T	c.(10-12)CCG>CTG	p.P4L		NM_053049	NP_444277	Q969E3	UCN3_HUMAN	urocortin 3 preproprotein	4						extracellular region	hormone activity				0						ATGCTGATGCCGGTCCACTTC	0.602													17	79					0	0	1	0	0	
PTPLA	9200	broad.mit.edu	37	10	17632370	17632370	+	Missense_Mutation	SNP	T	A	A	rs140078758		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:17632370T>A	uc001ipg.2	-	7	895	c.860A>T	c.(859-861)GAT>GTT	p.D287V		NM_014241	NP_055056	B0YJ81	HACD1_HUMAN	protein tyrosine phosphatase-like, member A	287	Cytoplasmic (Potential).				fatty acid biosynthetic process|multicellular organismal development|signal transduction	endoplasmic reticulum membrane|integral to membrane	lyase activity|protein tyrosine phosphatase activity			central_nervous_system(1)|skin(1)	2						CATTTAATCATCCTTTTCTAC	0.323													25	85					0	0	1	0	0	
NEBL	10529	broad.mit.edu	37	10	21101815	21101815	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:21101815C>T	uc001iqi.2	-	24	2798	c.2401G>A	c.(2401-2403)GTG>ATG	p.V801M	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Missense_Mutation_p.V138M	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	801	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GGATCGTCCACGACGGGAGTA	0.463													24	50					0	0	1	0	0	
RET	5979	broad.mit.edu	37	10	43606743	43606743	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:43606743C>T	uc001jal.2	+	7	1542	c.1352C>T	c.(1351-1353)ACG>ATG	p.T451M	RET_uc001jak.1_Missense_Mutation_p.T451M|RET_uc010qez.1_Missense_Mutation_p.T197M	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	451	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AACTGCAGCACGCTAGGGGTG	0.582		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				38	114					0	0	1	0	0	
C10orf72	196740	broad.mit.edu	37	10	50315810	50315810	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:50315810G>A	uc001jhf.2	-	2	315	c.286C>T	c.(286-288)CGG>TGG	p.R96W	C10orf72_uc001jhh.2_Missense_Mutation_p.R96W	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	96	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						AGCCTCCGCCGTTTGGCGCTG	0.607													23	75					0	0	1	0	0	
OGDHL	55753	broad.mit.edu	37	10	50955158	50955158	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:50955158A>G	uc001jie.2	-	9	1226	c.1084T>C	c.(1084-1086)TCC>CCC	p.S362P	OGDHL_uc009xog.2_Missense_Mutation_p.S389P|OGDHL_uc010qgt.1_Missense_Mutation_p.S305P|OGDHL_uc010qgu.1_Missense_Mutation_p.S153P|OGDHL_uc009xoh.2_Missense_Mutation_p.S153P	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	362					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCCAGGTGGGAGGGGTTGGCA	0.607													23	84					0	0	1	0	0	
OGDHL	55753	broad.mit.edu	37	10	50955201	50955201	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:50955201G>A	uc001jie.2	-	9	1183	c.1041C>T	c.(1039-1041)CGC>CGT	p.R347R	OGDHL_uc009xog.2_Silent_p.R374R|OGDHL_uc010qgt.1_Silent_p.R290R|OGDHL_uc010qgu.1_Silent_p.R138R|OGDHL_uc009xoh.2_Silent_p.R138R	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	347					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGTTGGTGACGCGGTTGATCC	0.587													22	76					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55581906	55581906	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:55581906G>T	uc001jju.1	-	33	5975	c.5580C>A	c.(5578-5580)TCC>TCA	p.S1860S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.S1857S|PCDH15_uc010qhw.1_Silent_p.S1820S|PCDH15_uc010qhx.1_Silent_p.S1791S|PCDH15_uc010qhy.1_Silent_p.S1867S|PCDH15_uc010qhz.1_Silent_p.S1862S|PCDH15_uc010qia.1_Silent_p.S1840S|PCDH15_uc010qib.1_Silent_p.S1837S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1860	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTGTCATAGAGGACTTAATTT	0.388										HNSCC(58;0.16)			33	148					1.69901e-12	1.82931e-12	1	1	0	
ANK3	288	broad.mit.edu	37	10	61958143	61958143	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:61958143G>A	uc001jky.2	-	14	1836	c.1644C>T	c.(1642-1644)GCC>GCT	p.A548A	ANK3_uc010qih.1_Silent_p.A531A|ANK3_uc001jkz.3_Silent_p.A542A|ANK3_uc001jlb.1_Silent_p.A77A|ANK3_uc001jlc.1_Silent_p.A209A	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	548	ANK 15.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAAGGAACGCGGCCACATCCT	0.498													16	85					0	0	1	0	0	
DNA2	1763	broad.mit.edu	37	10	70202690	70202690	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:70202690T>C	uc001jof.2	-	9	1657	c.1657A>G	c.(1657-1659)ATG>GTG	p.M553V	DNA2_uc001jog.1_Missense_Mutation_p.M467V|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	467					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						GAAGCAGGCATTAGCCAGATA	0.368													4	24					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70332938	70332938	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:70332938G>T	uc001jok.3	+	2	1348	c.843G>T	c.(841-843)AAG>AAT	p.K281N		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	281					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AATCTCTTAAGTTATCTGATT	0.428													20	82					1.37522e-17	1.50963e-17	1	1	0	
TET1	80312	broad.mit.edu	37	10	70450669	70450669	+	Missense_Mutation	SNP	G	A	A	rs146039331		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:70450669G>A	uc001jok.3	+	12	6014	c.5509G>A	c.(5509-5511)GCT>ACT	p.A1837T		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1837					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GATGCCATCCGCTCCTCACCC	0.483													39	85					0	0	1	0	0	
CDH23	64072	broad.mit.edu	37	10	73405660	73405660	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:73405660G>A	uc001jrx.3	+	12	1590	c.1213G>A	c.(1213-1215)GTC>ATC	p.V405I	CDH23_uc001jrw.3_Missense_Mutation_p.V405I|CDH23_uc001jry.2_Missense_Mutation_p.V21I|CDH23_uc001jrz.2_Missense_Mutation_p.V21I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	405	Cadherin 4.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCCGACCTCCGTCCAGGGGAA	0.567													13	27					0	0	1	0	0	
KCNMA1	3778	broad.mit.edu	37	10	78713616	78713616	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:78713616G>A	uc001jxn.2	-	21	2604	c.2427C>T	c.(2425-2427)TAC>TAT	p.Y809Y	KCNMA1_uc001jxj.2_Silent_p.Y755Y|KCNMA1_uc001jxk.1_Silent_p.Y427Y|KCNMA1_uc009xrt.1_Silent_p.Y600Y|KCNMA1_uc001jxl.1_Silent_p.Y434Y|KCNMA1_uc001jxo.2_Silent_p.Y751Y|KCNMA1_uc001jxm.2_Silent_p.Y751Y|KCNMA1_uc001jxq.2_Silent_p.Y754Y	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	809	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CAGTAGAGTCGTACTTCTTCA	0.488													22	52					0	0	1	0	0	
FAM35A	54537	broad.mit.edu	37	10	88911847	88911847	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:88911847A>T	uc001kei.3	+	3	850	c.736A>T	c.(736-738)ATT>TTT	p.I246F		NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	246										ovary(2)|skin(2)	4						TCTCAGTATAATTACCTCCAG	0.388													14	38					0	0	1	0	0	
PCGF5	84333	broad.mit.edu	37	10	93038067	93038067	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:93038067C>T	uc001khh.2	+	10	1012	c.765C>T	c.(763-765)TTC>TTT	p.F255F	PCGF5_uc010qnk.1_Silent_p.F255F|PCGF5_uc001khi.2_Silent_p.F255F	NM_032373	NP_115749	Q86SE9	PCGF5_HUMAN	polycomb group ring finger 5	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|PcG protein complex	zinc ion binding			lung(1)	1						GAATTGATTTCGGTTAGACCA	0.388													13	42					0	0	1	0	0	
ENTPD1	953	broad.mit.edu	37	10	97605164	97605164	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:97605164C>A	uc001klh.3	+	6	948	c.624C>A	c.(622-624)ACC>ACA	p.T208T	ENTPD1_uc001kle.1_Silent_p.T215T|ENTPD1_uc001kli.3_Silent_p.T215T|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Silent_p.T220T|ENTPD1_uc010qok.1_Silent_p.T100T|ENTPD1_uc010qol.1_Silent_p.T100T|ENTPD1_uc010qom.1_Silent_p.T208T|ENTPD1_uc010qon.1_Silent_p.T70T|ENTPD1_uc009xva.2_Silent_p.T70T|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	208	Extracellular (Potential).			T -> TGET (in Ref. 8; AA sequence).	cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		ATCAGGAAACCTTTGGAGCTT	0.463													63	128					1.08241e-25	1.19682e-25	1	1	0	
DNTT	1791	broad.mit.edu	37	10	98079060	98079060	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:98079060G>A	uc001kmf.2	+	3	590	c.420G>A	c.(418-420)CCG>CCA	p.P140P	DNTT_uc001kmg.2_Silent_p.P140P	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	140					DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		CAGGCCCCCCGAAGACTCCAC	0.393													32	110					0	0	1	0	0	
HPS6	79803	broad.mit.edu	37	10	103825418	103825418	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:103825418C>G	uc001kuj.2	+	1	272	c.187C>G	c.(187-189)CCC>GCC	p.P63A		NM_024747	NP_079023	Q86YV9	HPS6_HUMAN	Hermansky-Pudlak syndrome-6	63						cytosol|early endosome membrane|endoplasmic reticulum|microsome					0		Colorectal(252;0.122)		Epithelial(162;5.93e-08)|all cancers(201;1.03e-06)		GTCGCGAGGGCCCGGCGCGGA	0.761									Hermansky-Pudlak_syndrome				4	7					0	0	1	0	0	
NFKB2	4791	broad.mit.edu	37	10	104161261	104161261	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:104161261C>T	uc001kvb.2	+	20	2544	c.2279C>T	c.(2278-2280)CCG>CTG	p.P760L	NFKB2_uc001kva.2_Missense_Mutation_p.P760L|NFKB2_uc001kvd.2_Missense_Mutation_p.P760L|NFKB2_uc009xxc.2_Missense_Mutation_p.P760L	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	760			Missing (in truncated form p80HT).|Missing (in truncated form LB40).|Missing (in truncated form EB308).		innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		CCCCTGACCCCGCCCAGCCCA	0.602			T	IGH@	B-NHL								10	40					0	0	1	0	0	
TMEM180	79847	broad.mit.edu	37	10	104231116	104231116	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:104231116G>A	uc001kvt.2	+	6	1010	c.791G>A	c.(790-792)CGG>CAG	p.R264Q	TMEM180_uc001kvs.2_Missense_Mutation_p.R113Q|TMEM180_uc010qql.1_5'UTR|TMEM180_uc010qqm.1_Missense_Mutation_p.R113Q|TMEM180_uc001kvu.2_Missense_Mutation_p.R264Q	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	264						integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GCACGCCATCGGAACTTCCTG	0.622													19	71					0	0	1	0	0	
DUSP5	1847	broad.mit.edu	37	10	112258088	112258088	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:112258088C>T	uc001kzd.2	+	1	464	c.209C>T	c.(208-210)GCG>GTG	p.A70V		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	70	Nuclear localization signal (Potential).|Rhodanese.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		CCCGACGAGGCGGCGCGCGCG	0.647													5	9					0	0	1	0	0	
VWA2	340706	broad.mit.edu	37	10	116049200	116049200	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:116049200G>A	uc001lbl.1	+	12	2395	c.2074G>A	c.(2074-2076)GCC>ACC	p.A692T	VWA2_uc001lbk.1_Missense_Mutation_p.A692T|VWA2_uc009xyf.1_Missense_Mutation_p.A388T	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	692	VWFA 3.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GGCAGCTTACGCCGACCTGCG	0.647													19	68					0	0	1	0	0	
HTRA1	5654	broad.mit.edu	37	10	124266390	124266390	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:124266390G>A	uc001lgj.2	+	4	1089	c.961G>A	c.(961-963)GCC>ACC	p.A321T		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	321	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				CCAGACCGACGCCATCATCAA	0.592													10	33					0	0	1	0	0	
HMX3	340784	broad.mit.edu	37	10	124896863	124896863	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:124896863G>A	uc010quc.1	+	2	690	c.690G>A	c.(688-690)ACG>ACA	p.T230T		NM_001105574	NP_001099044	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	230	Homeobox.				cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		AGAAGAAGACGCGCACAGTCT	0.667													5	14					0	0	1	0	0	
HMX3	340784	broad.mit.edu	37	10	124896921	124896921	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:124896921C>T	uc010quc.1	+	2	748	c.748C>T	c.(748-750)CGC>TGC	p.R250C		NM_001105574	NP_001099044	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	250	Homeobox.				cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		CGACATGAAGCGCTATCTGAG	0.612													9	36					0	0	1	0	0	
MMP21	118856	broad.mit.edu	37	10	127462428	127462428	+	Silent	SNP	C	T	T	rs150959910		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:127462428C>T	uc001liu.2	-	2	669	c.669G>A	c.(667-669)GCG>GCA	p.A223A		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	223					proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				TGATGTCGACCGCGGCCCCGG	0.731													22	61					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129913669	129913669	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:129913669C>T	uc001lke.2	-	7	1198	c.1003G>A	c.(1003-1005)GCC>ACC	p.A335T	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	335					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GGAAAGCTGGCGCCCACAGCC	0.493													27	75					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	10	134647007	134647007	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:134647007G>A	uc010qux.1	-	42	6150	c.6150C>T	c.(6148-6150)GCC>GCT	p.A2050A		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CTATCTTATCGGCAACCTCAG	0.572													14	127					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	10	134671251	134671251	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:134671251G>A	uc010qux.1	-	31	4595	c.4595C>T	c.(4594-4596)GCG>GTG	p.A1532V		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CAAGTAATACGCAGTTTTTTG	0.443													6	7					0	0	1	0	0	
KNDC1	85442	broad.mit.edu	37	10	134999993	134999993	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:134999993C>T	uc001llz.1	+	6	1142	c.1141C>T	c.(1141-1143)CGC>TGC	p.R381C	KNDC1_uc001lma.1_Missense_Mutation_p.R316C	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	381					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CTGTGCAGGCCGCAGCACGGA	0.672													6	22					0	0	1	0	0	
ANO9	338440	broad.mit.edu	37	11	420496	420496	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:420496G>A	uc001lpi.2	-	19	1838	c.1753C>T	c.(1753-1755)CGG>TGG	p.R585W	ANO9_uc001lph.2_Missense_Mutation_p.R278W|ANO9_uc010qvv.1_Missense_Mutation_p.R441W	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	585	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						ACCAGGCGCCGCTGCAACCAG	0.701													7	13					0	0	1	0	0	
DEAF1	10522	broad.mit.edu	37	11	688398	688398	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:688398G>A	uc001lqq.1	-	3	1143	c.450C>T	c.(448-450)GTC>GTT	p.V150V	DEAF1_uc009ycf.1_5'Flank	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	150					embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		CTGTGTGGACGACAATCAGTG	0.622													16	50					0	0	1	0	0	
MUC2	4583	broad.mit.edu	37	11	1094719	1094719	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:1094719C>T	uc001lsx.1	+	34	12920	c.12893C>T	c.(12892-12894)ACT>ATT	p.T4298I		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4298						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ACCCCCAGCACTGTGCAGACG	0.637													8	88					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1253735	1253735	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:1253735G>A	uc009ycr.1	+	32	4002	c.3876G>A	c.(3874-3876)TCG>TCA	p.S1292S	MUC5B_uc009yct.1_Silent_p.S633S|MUC5B_uc001ltb.2_Silent_p.S636S|MUC5B_uc001lta.2_Silent_p.S301S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	633	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GTGCCTTCTCGCGCTGCCACT	0.672													8	9					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1268790	1268790	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:1268790G>A	uc009ycr.1	+	50	12390	c.12264G>A	c.(12262-12264)TCG>TCA	p.S4088S	MUC5B_uc001ltb.2_Silent_p.S3563S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3560	7 X Cys-rich subdomain repeats.|Thr-rich.|HAT 2.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCCCCACATCGGCCCCCATAA	0.701													16	60					0	0	1	0	0	
KRTAP5-1	387264	broad.mit.edu	37	11	1605918	1605918	+	Missense_Mutation	SNP	C	T	T	rs145180041		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:1605918C>T	uc001ltu.1	-	1	596	c.562G>A	c.(562-564)GGT>AGT	p.G188S	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	188	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCACAAGAACCGCAGCCCCCC	0.677													15	41					0	0	1	0	0	
OR56A5	390084	broad.mit.edu	37	11	5989378	5989378	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:5989378C>T	uc010qzu.1	-	1	347	c.347G>A	c.(346-348)TGC>TAC	p.C116Y		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	116	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						CATGAATGTGCAGGACTCCAT	0.493													6	31					0	0	1	0	0	
FAM160A2	84067	broad.mit.edu	37	11	6239210	6239210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:6239210G>A	uc001mcl.3	-	9	1965	c.1606C>T	c.(1606-1608)CGA>TGA	p.R536*	FAM160A2_uc001mck.3_Nonsense_Mutation_p.R550*|FAM160A2_uc001mcm.2_Nonsense_Mutation_p.R536*	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	536					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						GTAGGCCGTCGGCCAGGGCTG	0.657													11	50					0	0	1	0	0	
CNGA4	1262	broad.mit.edu	37	11	6261463	6261463	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:6261463G>A	uc001mco.2	+	4	546	c.439G>A	c.(439-441)GCG>ACG	p.A147T	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Missense_Mutation_p.A107T	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	147	Extracellular (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTTCTCCGCGCGCCCCGCCT	0.587													59	155					0	0	1	0	0	
RRP8	23378	broad.mit.edu	37	11	6622702	6622702	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:6622702A>G	uc001med.2	-	3	673	c.594T>C	c.(592-594)TGT>TGC	p.C198C	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	198					chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						ACTTGTTCTTACATCTTCTCT	0.552													28	78					0	0	1	0	0	
DCHS1	8642	broad.mit.edu	37	11	6651257	6651257	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:6651257C>T	uc001mem.1	-	10	5178	c.4768G>A	c.(4768-4770)GGC>AGC	p.G1590S		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	1590	Cadherin 15.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGGAAGTGGCCGTCCCCGCCA	0.682													16	29					0	0	1	0	0	
OR2D2	120776	broad.mit.edu	37	11	6913341	6913341	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:6913341G>A	uc010rau.1	-	1	391	c.391C>T	c.(391-393)CGT>TGT	p.R131C		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTAGGGTAACGCAGAGGATTG	0.498													18	63					0	0	1	0	0	
MICAL2	9645	broad.mit.edu	37	11	12225871	12225871	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:12225871C>T	uc001mjz.2	+	4	627	c.339C>T	c.(337-339)GTC>GTT	p.V113V	MICAL2_uc010rch.1_Silent_p.V113V|MICAL2_uc001mjy.2_Silent_p.V113V|MICAL2_uc001mka.2_Silent_p.V113V|MICAL2_uc010rci.1_Silent_p.V113V|MICAL2_uc001mkb.2_Silent_p.V113V|MICAL2_uc001mkc.2_Silent_p.V113V	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	113	FAD (Potential).					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		CCAAAGTGGTCGTGGTGGAGA	0.567													26	55					0	0	1	0	0	
MICAL2	9645	broad.mit.edu	37	11	12264287	12264287	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:12264287G>A	uc001mjz.2	+	20	2914	c.2626G>A	c.(2626-2628)GCC>ACC	p.A876T	MICAL2_uc010rch.1_Intron|MICAL2_uc001mka.2_Missense_Mutation_p.A876T|MICAL2_uc010rci.1_Missense_Mutation_p.A876T|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Intron|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	876						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GGCTCACCTTGCCTCCATGTT	0.512													23	62					0	0	1	0	0	
FAR1	84188	broad.mit.edu	37	11	13749177	13749177	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:13749177C>T	uc001mld.2	+	11	1487	c.1332C>T	c.(1330-1332)TAC>TAT	p.Y444Y		NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	444					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						CTAAGAAGTACGTATTGAATG	0.373													6	98					0	0	1	0	0	
NAV2	89797	broad.mit.edu	37	11	20078176	20078176	+	Splice_Site	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:20078176T>C	uc010rdm.1	+	21	5360	c.4999_splice	c.e21+2	p.V1667_splice	NAV2_uc001mpp.2_Intron|NAV2_uc001mpr.3_Intron|NAV2_uc001mpt.2_Intron|NAV2_uc009yhx.2_Intron|NAV2_uc009yhy.1_Intron|NAV2_uc009yhz.2_Intron|NAV2_uc001mpu.2_Intron	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2							nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						ATGAGTTAGGTGAGTAAGCAG	0.448													14	30					0	0	1	0	0	
TCP11L1	55346	broad.mit.edu	37	11	33087384	33087384	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:33087384A>G	uc001mud.2	+	8	1381	c.981A>G	c.(979-981)TTA>TTG	p.L327L	TCP11L1_uc009yju.2_Silent_p.L142L|TCP11L1_uc010rei.1_Silent_p.L327L|TCP11L1_uc001mue.2_Silent_p.L327L|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	327											0						AGACAGTTTTAATGGACCAGT	0.592											OREG0020866	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	58	183					0	0	1	0	0	
COMMD9	29099	broad.mit.edu	37	11	36293244	36293244	+	RNA	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:36293244G>T	uc009yki.1	-	2		c.328C>A						Q9P000	COMD9_HUMAN	Homo sapiens cDNA FLJ45212 fis, clone BRCAN2018667.											ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				AGGAAGAGTGGGAATGGCATC	0.358													6	29					0.00116845	0.0011919	1	1	0	
CHST1	8534	broad.mit.edu	37	11	45672341	45672341	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:45672341G>A	uc001mys.1	-	4	804	c.133C>T	c.(133-135)CGA>TGA	p.R45*		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	45	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		TCGCACAGTCGCTCGGCCAGC	0.667													26	82					0	0	1	0	0	
CREB3L1	90993	broad.mit.edu	37	11	46339020	46339020	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:46339020G>A	uc001ncf.2	+	10	1675	c.1240G>A	c.(1240-1242)GTC>ATC	p.V414I	CREB3L1_uc001ncg.2_Missense_Mutation_p.V48I	NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	414	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		CGCAGACGGCGTCTACACGGC	0.657			T	FUS	myxofibrosarcoma								18	34					0	0	1	0	0	
ZNF408	79797	broad.mit.edu	37	11	46726912	46726912	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:46726912G>A	uc001nde.1	+	5	1892	c.1662G>A	c.(1660-1662)CCG>CCA	p.P554P	ZNF408_uc010rgw.1_Silent_p.P546P	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	554	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						ACTTGTGCCCGGTGTGTGGCA	0.667													11	34					0	0	1	0	0	
LRP4	4038	broad.mit.edu	37	11	46918528	46918528	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:46918528C>T	uc001ndn.3	-	8	960	c.814G>A	c.(814-816)GCA>ACA	p.A272T		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	272	Extracellular (Potential).|LDL-receptor class A 7.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		AACTGTTCTGCCGTACACATG	0.552													26	74					0	0	1	0	0	
PACSIN3	29763	broad.mit.edu	37	11	47202237	47202237	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:47202237G>T	uc001ndw.2	-	5	554	c.216C>A	c.(214-216)CCC>CCA	p.P72P	PACSIN3_uc001ndx.2_Silent_p.P72P|PACSIN3_uc001ndy.2_Silent_p.P72P|PACSIN3_uc001ndz.2_RNA|PACSIN3_uc001nea.2_RNA	NM_016223	NP_057307	Q9UKS6	PACN3_HUMAN	protein kinase C and casein kinase substrate in	72	FCH.				endocytosis|negative regulation of endocytosis|positive regulation of membrane protein ectodomain proteolysis	cytoplasm|plasma membrane	cytoskeletal protein binding				0						TGCCATACTGGGGGCCTGCAG	0.652													6	23					5.18039e-06	5.38741e-06	1	1	0	
TRIM48	79097	broad.mit.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:55035844T>C	uc010rid.1	+	4	660	c.574T>C	c.(574-576)TAC>CAC	p.Y192H		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	176						intracellular	zinc ion binding				0						AGACATATTATACAGGTGAGT	0.338													6	80					0	0	1	0	0	
OR1S1	219959	broad.mit.edu	37	11	57982468	57982468	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:57982468T>C	uc010rkc.1	+	1	252	c.252T>C	c.(250-252)ATT>ATC	p.I84I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	84	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTGCTGATATTTCCTCCATTT	0.433													49	134					0	0	1	0	0	
OR5B2	390190	broad.mit.edu	37	11	58190331	58190331	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:58190331G>A	uc010rkg.1	-	1	404	c.404C>T	c.(403-405)ACG>ATG	p.T135M		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TACACTGGCCGTCATGGTGGT	0.507													26	55					0	0	1	0	0	
GLYATL2	219970	broad.mit.edu	37	11	58602201	58602201	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:58602201G>T	uc001nnd.3	-	6	717	c.586C>A	c.(586-588)CTC>ATC	p.L196I	GLYATL2_uc009ymq.2_Missense_Mutation_p.L196I	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	196						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AAATCCTGGAGGCAGCGTTCA	0.448													19	42					3.32936e-07	3.48961e-07	1	1	0	
OSBP	5007	broad.mit.edu	37	11	59344479	59344479	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:59344479A>G	uc001noc.1	-	13	2560	c.2080T>C	c.(2080-2082)TAC>CAC	p.Y694H	OSBP_uc009ymr.1_RNA	NM_002556	NP_002547	P22059	OSBP1_HUMAN	oxysterol binding protein	694					lipid transport	Golgi membrane	oxysterol binding			large_intestine(1)	1		all_epithelial(135;0.000236)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GAGAAGTAGTACATGTTTTCT	0.458													42	91					0	0	1	0	0	
PATL1	219988	broad.mit.edu	37	11	59419061	59419061	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:59419061G>A	uc001noe.3	-	12	1623	c.1480C>T	c.(1480-1482)CGA>TGA	p.R494*	PATL1_uc009yms.1_Nonsense_Mutation_p.R464*|PATL1_uc010rkw.1_Nonsense_Mutation_p.R199*	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	494	Region C.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						ATCATTTTTCGGGGATTATTC	0.368													7	24					0	0	1	0	0	
AHNAK	79026	broad.mit.edu	37	11	62296450	62296450	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:62296450C>T	uc001ntl.2	-	5	5739	c.5439G>A	c.(5437-5439)CCG>CCA	p.P1813P	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1813					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CATCAACTTGCGGCCCTCTGA	0.502													20	218					0	0	1	0	0	
AHNAK	79026	broad.mit.edu	37	11	62303479	62303479	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:62303479C>T	uc001ntl.2	-	3	392	c.92G>A	c.(91-93)GGC>GAC	p.G31D	AHNAK_uc001ntk.1_Missense_Mutation_p.G31D	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	31	PDZ.				nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CACAAAGACGCCGTCGTCCCT	0.647													14	60					0	0	1	0	0	
INTS5	80789	broad.mit.edu	37	11	62414812	62414812	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:62414812T>C	uc001nud.2	-	2	2793	c.2740A>G	c.(2740-2742)ATG>GTG	p.M914V	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	914					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						CCCTCAGCCATGACAGCCACT	0.617													49	150					0	0	1	0	0	
LGALS12	85329	broad.mit.edu	37	11	63283104	63283104	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:63283104A>G	uc001nxa.2	+	8	1124	c.783A>G	c.(781-783)AGA>AGG	p.R261R	LGALS12_uc001nxb.2_Silent_p.R252R|LGALS12_uc001nxc.2_Silent_p.R262R|LGALS12_uc001nxd.2_Silent_p.R200R|LGALS12_uc001nxe.2_Silent_p.R191R|LGALS12_uc009yot.2_Silent_p.R221R	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	261	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						TCGCAGACAGAACTCTGGCCT	0.557													11	42					0	0	1	0	0	
RARRES3	5920	broad.mit.edu	37	11	63307030	63307030	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:63307030C>T	uc001nxf.3	+	2	120	c.52C>T	c.(52-54)CGC>TGC	p.R18C		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	18					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						TGAGATTTTCCGCCTTGGCTA	0.483													28	93					0	0	1	0	0	
SLC22A11	55867	broad.mit.edu	37	11	64337280	64337280	+	Silent	SNP	G	A	A	rs34836439		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:64337280G>A	uc001oai.2	+	9	1913	c.1539G>A	c.(1537-1539)CCG>CCA	p.P513P	SLC22A11_uc001oaj.2_Intron|SLC22A11_uc009ypq.2_Silent_p.P405P	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	513	Cytoplasmic (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TCTTCCTCCCGGAGACCCAGG	0.622													28	80					0	0	1	0	0	
EHD1	10938	broad.mit.edu	37	11	64622143	64622143	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:64622143C>T	uc001obu.1	-	5	1522	c.1267G>A	c.(1267-1269)GGG>AGG	p.G423R	EHD1_uc001obt.1_Missense_Mutation_p.G106R|EHD1_uc001obv.1_Missense_Mutation_p.G423R|EHD1_uc010rnq.1_Missense_Mutation_p.G437R	NM_006795	NP_006786	Q9H4M9	EHD1_HUMAN	EH-domain containing 1	423					blood coagulation|cholesterol homeostasis|endocytic recycling|intracellular protein transport|low-density lipoprotein particle clearance|positive regulation of cholesterol storage|protein homooligomerization	early endosome membrane|lipid particle|plasma membrane|platelet dense tubular network membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|protein binding				0						TAGCCGTGCCCGAACGGCCCG	0.667													46	107					0	0	1	0	0	
SLC22A20	440044	broad.mit.edu	37	11	64981434	64981434	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:64981434G>A	uc010roc.1	+	1	88	c.85G>A	c.(85-87)GGC>AGC	p.G29S	SLC22A20_uc010rob.1_Missense_Mutation_p.G29S	NM_001004326	NP_001004326	A6NK97	S22AK_HUMAN	solute carrier family 22, member 20	29	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			central_nervous_system(1)	1						GCTGCCCTGCGGCCTGCTGGC	0.667													9	23					0	0	1	0	0	
EHBP1L1	254102	broad.mit.edu	37	11	65347567	65347567	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:65347567C>T	uc001oeo.3	+	5	593	c.328C>T	c.(328-330)CGG>TGG	p.R110W	EHBP1L1_uc001oep.1_5'Flank	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	110										central_nervous_system(1)	1						TAAGGGGCAGCGGAAGGTGCT	0.652													3	26					0	0	1	0	0	
SIPA1	6494	broad.mit.edu	37	11	65408583	65408583	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:65408583C>T	uc001ofb.2	+	2	358	c.191C>T	c.(190-192)ACG>ATG	p.T64M	SIPA1_uc010rom.1_Missense_Mutation_p.T64M|SIPA1_uc001ofd.2_Missense_Mutation_p.T64M	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	64					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						AGGCCCCCCACGCCAGCCAGC	0.736													7	23					0	0	1	0	0	
MUS81	80198	broad.mit.edu	37	11	65632486	65632486	+	Splice_Site	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:65632486A>G	uc001ofv.3	+	13	1626	c.1273_splice	c.e13-2	p.G425_splice	MUS81_uc001ofw.3_Intron|MUS81_uc001ofx.3_5'UTR	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog						DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		TTCTTCCCTCAGGGCCACACC	0.642								Homologous_recombination					27	87					0	0	1	0	0	
BBS1	582	broad.mit.edu	37	11	66287195	66287195	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:66287195C>T	uc001oij.1	+	8	711	c.699C>T	c.(697-699)CCC>CCT	p.P233P	BBS1_uc001oii.1_Silent_p.P270P|BBS1_uc010rpf.1_RNA|BBS1_uc010rpg.1_Intron|BBS1_uc001oik.1_Silent_p.P157P|BBS1_uc001oil.1_Silent_p.P233P	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	233					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						TGCTTGACCCCGAGGCCTTCA	0.597									Bardet-Biedl_syndrome				4	41					0	0	1	0	0	
LRFN4	78999	broad.mit.edu	37	11	66625421	66625421	+	Missense_Mutation	SNP	G	A	A	rs143224387	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:66625421G>A	uc001ojr.2	+	1	546	c.206G>A	c.(205-207)CGC>CAC	p.R69H	PC_uc001ojo.1_Intron|PC_uc001ojp.1_Intron|PC_uc001ojn.1_Intron|LRFN4_uc001ojq.1_Missense_Mutation_p.R69H|LRFN4_uc001ojs.2_Missense_Mutation_p.R69H	NM_024036	NP_076941	Q6PJG9	LRFN4_HUMAN	leucine rich repeat and fibronectin type III	69	Extracellular (Potential).|LRR 1.					integral to membrane					0						CCTGACTTCCGCAACATGACG	0.662													8	43					0	0	1	0	0	
PC	5091	broad.mit.edu	37	11	66638891	66638891	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:66638891C>T	uc001ojn.1	-	4	431	c.382G>A	c.(382-384)GCC>ACC	p.A128T	PC_uc001ojo.1_Missense_Mutation_p.A128T|PC_uc001ojp.1_Missense_Mutation_p.A128T	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	128	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CAGGCCTGGGCGAAGTCCGCT	0.632													7	151					0	0	1	0	0	
PC	5091	broad.mit.edu	37	11	66638919	66638919	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:66638919G>A	uc001ojn.1	-	4	403	c.354C>T	c.(352-354)TAC>TAT	p.Y118Y	PC_uc001ojo.1_Silent_p.Y118Y|PC_uc001ojp.1_Silent_p.Y118Y	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	118	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	AGAGGAACCCGTAGCCAGGGT	0.627													40	108					0	0	1	0	0	
CORO1B	57175	broad.mit.edu	37	11	67207611	67207611	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:67207611C>T	uc001olj.1	-	7	1021	c.985G>A	c.(985-987)GTC>ATC	p.V329I	PTPRCAP_uc001oli.1_5'Flank|CORO1B_uc009yrs.1_RNA|CORO1B_uc001olk.1_Missense_Mutation_p.V329I|CORO1B_uc009yrt.1_RNA|CORO1B_uc009yru.1_RNA|CORO1B_uc001oll.1_Missense_Mutation_p.V329I	NM_020441	NP_065174	Q9BR76	COR1B_HUMAN	coronin, actin binding protein, 1B	329					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin filament binding			large_intestine(1)|ovary(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			CACTTGCTGACCTCCAGGCCC	0.617													17	82					0	0	1	0	0	
XRRA1	143570	broad.mit.edu	37	11	74554923	74554923	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:74554923G>A	uc009yub.2	-	18	2433	c.2101C>T	c.(2101-2103)CGG>TGG	p.R701W	XRRA1_uc001ovm.2_Intron|XRRA1_uc001ovn.2_Missense_Mutation_p.R324W|XRRA1_uc001ovo.2_Missense_Mutation_p.R309W|XRRA1_uc001ovq.3_Intron|XRRA1_uc001ovp.3_Missense_Mutation_p.R426W|XRRA1_uc001ovr.2_Missense_Mutation_p.R324W|XRRA1_uc001ovs.1_3'UTR	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	701					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						GTAATGTTCCGGGGATCCCGC	0.552													4	15					0	0	1	0	0	
MYO7A	4647	broad.mit.edu	37	11	76910863	76910863	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:76910863G>A	uc001oyb.2	+	35	5124	c.4852G>A	c.(4852-4854)GCA>ACA	p.A1618T	MYO7A_uc010rsm.1_Missense_Mutation_p.A1569T|MYO7A_uc001oyc.2_Missense_Mutation_p.A1580T|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.G791S	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1618	SH3.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CCCCAACCCCGGTGAGTGGCT	0.453													5	23					0	0	1	0	0	
BIRC2	329	broad.mit.edu	37	11	102248749	102248749	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:102248749G>A	uc001pgy.2	+	9	3091	c.1692G>A	c.(1690-1692)AGG>AGA	p.R564R	BIRC2_uc010ruq.1_Silent_p.R515R|BIRC2_uc010rur.1_Silent_p.R564R	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	564					cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		AATTGAGGAGGTTGCAAGAAG	0.358													30	68					0	0	1	0	0	
MMP8	4317	broad.mit.edu	37	11	102586154	102586154	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:102586154C>A	uc001phe.2	-	7	1016	c.917G>T	c.(916-918)AGG>ATG	p.R306M	MMP8_uc010rut.1_Missense_Mutation_p.R241M|MMP8_uc010ruu.1_Missense_Mutation_p.R283M	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	306	Hemopexin-like 1.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		CTGAGGATGCCTTCTCCAGAA	0.413													26	49					1.75199e-13	1.89016e-13	1	1	0	
ATM	472	broad.mit.edu	37	11	108129784	108129784	+	Silent	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:108129784A>C	uc001pkb.1	+	16	2833	c.2448A>C	c.(2446-2448)GCA>GCC	p.A816A	ATM_uc009yxr.1_Silent_p.A816A	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	816					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ATGACATTGCAGATATTTGTA	0.244			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			7	30					0	0	1	0	0	
TEX12	56158	broad.mit.edu	37	11	112042549	112042549	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:112042549A>T	uc001pnc.2	+	5	414	c.282A>T	c.(280-282)AAA>AAT	p.K94N	TEX12_uc001pnd.2_Missense_Mutation_p.K94N	NM_031275	NP_112565	Q9BXU0	TEX12_HUMAN	testis expressed sequence 12	94											0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;1.2e-06)|BRCA - Breast invasive adenocarcinoma(274;1.4e-06)|all cancers(92;1.97e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		AACTCTTCAAAGAAGCCAATG	0.313													25	87					0	0	1	0	0	
NCAM1	4684	broad.mit.edu	37	11	113078710	113078710	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:113078710A>G	uc009yyq.1	+	7	1242	c.548A>G	c.(547-549)CAC>CGC	p.H183R	NCAM1_uc001pno.2_Missense_Mutation_p.H183R	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	301	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		GCGACCATCCACCTCAAAGTC	0.418													5	13					0	0	1	0	0	
CADM1	23705	broad.mit.edu	37	11	115102146	115102146	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:115102146T>G	uc001ppi.3	-	4	618	c.489A>C	c.(487-489)GAA>GAC	p.E163D	CADM1_uc001ppf.3_Missense_Mutation_p.E163D|CADM1_uc001ppk.3_Missense_Mutation_p.E163D|CADM1_uc001ppj.3_Missense_Mutation_p.E163D|CADM1_uc001ppl.2_Missense_Mutation_p.E163D	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	163	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		TGCAGTTGACTTCAATCTCCT	0.453													24	80					0	0	1	0	0	
CEP164	22897	broad.mit.edu	37	11	117261922	117261922	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:117261922G>T	uc001prc.2	+	17	2421	c.2274G>T	c.(2272-2274)GAG>GAT	p.E758D	CEP164_uc001prb.2_Missense_Mutation_p.E761D|CEP164_uc010rxk.1_Missense_Mutation_p.E732D|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.E191D	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	758	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		TGGAAGGGGAGAGGAAAGAAG	0.577													3	25					0.004672	0.00473862	1	1	0	
SCN2B	6327	broad.mit.edu	37	11	118039430	118039430	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:118039430G>A	uc001psf.2	-	2	298	c.107C>T	c.(106-108)GCC>GTC	p.A36V		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	36	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		GTTGAGGGTGGCAGGTACTGT	0.592													56	140					0	0	1	0	0	
HSPA8	3312	broad.mit.edu	37	11	122930436	122930436	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:122930436C>T	uc001pyo.2	-	5	943	c.865G>A	c.(865-867)GAA>AAA	p.E289K	HSPA8_uc009zbc.2_Missense_Mutation_p.E53K|HSPA8_uc001pyp.2_Missense_Mutation_p.E289K|HSPA8_uc010rzu.1_Missense_Mutation_p.E212K|HSPA8_uc009zbd.1_Missense_Mutation_p.E289K	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	289	Interaction with BAG1.				cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TCGATTCCTTCATAGAGAGAA	0.517													11	39					0	0	1	0	0	
SIAE	54414	broad.mit.edu	37	11	124524549	124524549	+	Splice_Site	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:124524549A>G	uc001qan.2	-	4	657	c.544_splice	c.e4+1	p.E182_splice		NM_170601	NP_733746	Q9HAT2	SIAE_HUMAN	sialate O-acetylesterase precursor							extracellular region|lysosome	carboxylesterase activity|sialate O-acetylesterase activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0243)		GCCGTCACATACCTGAGGTGG	0.468													40	147					0	0	1	0	0	
NTM	50863	broad.mit.edu	37	11	132204964	132204964	+	Missense_Mutation	SNP	G	A	A	rs147788695	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:132204964G>A	uc001qgp.2	+	7	1623	c.959G>A	c.(958-960)AGC>AAC	p.S320N	NTM_uc001qgm.2_Missense_Mutation_p.S320N|NTM_uc010sch.1_Missense_Mutation_p.S322N|NTM_uc010sci.1_Missense_Mutation_p.S331N|NTM_uc010scj.1_Missense_Mutation_p.S279N|NTM_uc001qgq.2_Missense_Mutation_p.S331N|NTM_uc001qgr.2_Missense_Mutation_p.S102N	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	320					cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						AGCGAGGTGAGCAACGGCACG	0.607													45	142					0	0	1	0	0	
GLB1L3	112937	broad.mit.edu	37	11	134182352	134182352	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:134182352G>A	uc009zdf.2	+	14	1757	c.1397G>A	c.(1396-1398)CGC>CAC	p.R466H	GLB1L3_uc001qho.3_RNA	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	466					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		TCCGGAGGCCGCCTCCGTGCC	0.607													13	40					0	0	1	0	0	
NRIP2	83714	broad.mit.edu	37	12	2936456	2936456	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:2936456C>T	uc001qlc.2	-	6	835	c.763G>A	c.(763-765)GAC>AAC	p.D255N	ITFG2_uc010sec.1_Intron|NRIP2_uc010sed.1_Missense_Mutation_p.D255N	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	255					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			TGCTCCAGGTCGATGCAGCAC	0.622													13	19					0	0	1	0	0	
EFCAB4B	84766	broad.mit.edu	37	12	3763474	3763474	+	Missense_Mutation	SNP	C	A	A	rs145685842		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:3763474C>A	uc001qmj.2	-	10	1522	c.950G>T	c.(949-951)CGG>CTG	p.R317L	EFCAB4B_uc010sen.1_Missense_Mutation_p.R317L|EFCAB4B_uc010seo.1_Missense_Mutation_p.R317L|EFCAB4B_uc001qmi.1_RNA	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	317	Potential.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			CTCCAGCTCCCGGGCCAGCTC	0.562													19	76					2.32416e-17	2.54869e-17	1	1	0	
DYRK4	8798	broad.mit.edu	37	12	4708291	4708291	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:4708291A>G	uc001qmx.2	+	7	818	c.658A>G	c.(658-660)ATG>GTG	p.M220V	DYRK4_uc009zeh.1_Missense_Mutation_p.M335V|DYRK4_uc001qmy.1_Missense_Mutation_p.M220V	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	220	Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			GTGCTTGCAGATGCTTTCGGT	0.448													25	97					0	0	1	0	0	
KCNA6	3742	broad.mit.edu	37	12	4920472	4920472	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:4920472C>T	uc001qng.2	+	1	2131	c.1265C>T	c.(1264-1266)ACG>ATG	p.T422M		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	422	Selectivity filter (By similarity).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						ACAATGACCACGGTAGGTTAC	0.592										HNSCC(72;0.22)			32	92					0	0	1	0	0	
CHD4	1108	broad.mit.edu	37	12	6705221	6705221	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:6705221C>T	uc001qpo.2	-	13	2139	c.1975G>A	c.(1975-1977)GTG>ATG	p.V659M	CHD4_uc001qpn.2_Missense_Mutation_p.V652M|CHD4_uc001qpp.2_Missense_Mutation_p.V656M	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	659	Chromo 2.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TGGATCTCCACATCCTCACTC	0.448													6	109					0	0	1	0	0	
CLSTN3	9746	broad.mit.edu	37	12	7303192	7303192	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:7303192G>A	uc001qsr.2	+	15	2576	c.2298G>A	c.(2296-2298)CGG>CGA	p.R766R	CLSTN3_uc001qss.2_Silent_p.R778R	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	766	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						CTCGTTATCGGCTGCGACACG	0.577													25	46					0	0	1	0	0	
RIMKLB	57494	broad.mit.edu	37	12	8906585	8906585	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:8906585A>T	uc001quu.2	+	5	844	c.593A>T	c.(592-594)GAG>GTG	p.E198V	RIMKLB_uc009zgf.1_RNA|RIMKLB_uc001qux.2_Missense_Mutation_p.E198V|RIMKLB_uc010sgl.1_Missense_Mutation_p.E198V|RIMKLB_uc001quw.2_Missense_Mutation_p.E198V	NM_020734	NP_065785	Q9ULI2	RIMKB_HUMAN	ribosomal modification protein rimK-like family	198	ATP-grasp.|ATP (By similarity).				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						TATGTTAAAGAGTCTCATGGA	0.478													51	92					0	0	1	0	0	
PZP	5858	broad.mit.edu	37	12	9318785	9318785	+	Silent	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:9318785T>G	uc001qvl.2	-	18	2150	c.2121A>C	c.(2119-2121)GTA>GTC	p.V707V	PZP_uc009zgl.2_Silent_p.V576V|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Silent_p.V39V	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						GTCTCTCTACTACTCCTAGAC	0.373													12	60					0	0	1	0	0	
OLR1	4973	broad.mit.edu	37	12	10321711	10321711	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:10321711A>G	uc001qxo.1	-	2	254	c.140T>C	c.(139-141)CTG>CCG	p.L47P	OLR1_uc010sgz.1_5'Flank|OLR1_uc010sha.1_Missense_Mutation_p.L47P	NM_002543	NP_002534	P78380	OLR1_HUMAN	oxidized low density lipoprotein (lectin-like)	47	Helical; Signal-anchor for type II membrane protein; (Potential).				blood circulation|blood coagulation|inflammatory response|leukocyte migration|proteolysis	extracellular region|integral to plasma membrane|membrane fraction	sugar binding			ovary(1)	1						TACTAATCCCAGGCAAAGGAC	0.453													20	55					0	0	1	0	0	
GRIN2B	2904	broad.mit.edu	37	12	13716251	13716251	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:13716251G>A	uc001rbt.2	-	13	4100	c.3921C>T	c.(3919-3921)TTC>TTT	p.F1307F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1307	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCAGGTCCACGAAGGTGTCGT	0.592													36	115					0	0	1	0	0	
PDE3A	5139	broad.mit.edu	37	12	20792849	20792849	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:20792849A>G	uc001reh.1	+	10	2231	c.2209A>G	c.(2209-2211)AAT>GAT	p.N737D		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	737	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GGAATTTATGAATTATTTTCA	0.279													28	53					0	0	1	0	0	
PPFIBP1	8496	broad.mit.edu	37	12	27829455	27829455	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:27829455G>A	uc001ric.1	+	18	1933	c.1556G>A	c.(1555-1557)CGA>CAA	p.R519Q	PPFIBP1_uc010sjr.1_Missense_Mutation_p.R350Q|PPFIBP1_uc001rib.1_Missense_Mutation_p.R502Q|PPFIBP1_uc001ria.2_Missense_Mutation_p.R488Q|PPFIBP1_uc001rid.1_Missense_Mutation_p.R366Q|PPFIBP1_uc001rif.1_5'Flank	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	519					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TTCGGCACTCGAAAAGTCAGA	0.512													34	113					0	0	1	0	0	
PPFIBP1	8496	broad.mit.edu	37	12	27829478	27829478	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:27829478C>G	uc001ric.1	+	18	1956	c.1579C>G	c.(1579-1581)CGG>GGG	p.R527G	PPFIBP1_uc010sjr.1_Missense_Mutation_p.R358G|PPFIBP1_uc001rib.1_Missense_Mutation_p.R510G|PPFIBP1_uc001ria.2_Missense_Mutation_p.R496G|PPFIBP1_uc001rid.1_Missense_Mutation_p.R374G|PPFIBP1_uc001rif.1_5'Flank	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	527					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TTCCTTTGGCCGGGGCTTTTT	0.502													30	100					0	0	1	0	0	
PTHLH	5744	broad.mit.edu	37	12	28116399	28116399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:28116399G>A	uc001rik.2	-	3	709	c.406C>T	c.(406-408)CAG>TAG	p.Q136*	PTHLH_uc001ril.2_Nonsense_Mutation_p.Q136*|PTHLH_uc001rim.2_Nonsense_Mutation_p.Q136*|PTHLH_uc001rin.2_Nonsense_Mutation_p.Q136*	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	136					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					TTCTTTTCCTGCTCCTTGCGT	0.527													16	101					0	0	1	0	0	
TSPAN11	441631	broad.mit.edu	37	12	31135580	31135580	+	Silent	SNP	G	A	A	rs143482979		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:31135580G>A	uc010sju.1	+	6	950	c.570G>A	c.(568-570)GTG>GTA	p.V190V	TSPAN11_uc001rjp.2_Silent_p.V190V|TSPAN11_uc010sjv.1_Silent_p.V180V	NM_001080509	NP_001073978	A1L157	TSN11_HUMAN	tetraspanin 11	190						integral to membrane					0	all_lung(12;3.11e-10)|Lung NSC(12;5.24e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CAGTGGTGGTGCGCTGCGGCC	0.657													9	9					0	0	1	0	0	
ARID2	196528	broad.mit.edu	37	12	46285562	46285562	+	Splice_Site	SNP	G	C	C	rs79280775		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:46285562G>C	uc001ros.1	+	17	4923	c.4923_splice	c.e17-1	p.K1641_splice	ARID2_uc001ror.2_Splice_Site_p.K1641_splice|ARID2_uc009zkg.1_Splice_Site_p.K1097_splice|ARID2_uc009zkh.1_Splice_Site_p.K1268_splice|ARID2_uc001rou.1_Splice_Site_p.K975_splice	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ATTTTTTATAGGTGGTTTCAG	0.368													25	58					0	0	1	0	0	
ADCY6	112	broad.mit.edu	37	12	49170977	49170977	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:49170977C>T	uc001rsh.3	-	5	1946	c.1286G>A	c.(1285-1287)TGT>TAT	p.C429Y	ADCY6_uc001rsj.3_Missense_Mutation_p.C429Y|ADCY6_uc001rsi.3_Missense_Mutation_p.C429Y|ADCY6_uc010slw.1_5'Flank	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	429	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						ACAGTAGTAACAGTCCCCCAA	0.567													106	116					0	0	1	0	0	
WNT1	7471	broad.mit.edu	37	12	49374303	49374303	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:49374303C>T	uc001rsu.2	+	3	653	c.455C>T	c.(454-456)ACG>ATG	p.T152M		NM_005430	NP_005421	P04628	WNT1_HUMAN	wingless-type MMTV integration site family,	152					brain segmentation|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|central nervous system morphogenesis|cerebellum formation|dermatome development|diencephalon development|embryonic axis specification|forebrain anterior/posterior pattern formation|fourth ventricle development|hemopoietic stem cell proliferation|hepatocyte differentiation|inner ear morphogenesis|mesoderm morphogenesis|midbrain development|midbrain-hindbrain boundary maturation during brain development|negative regulation of cell-cell adhesion|negative regulation of cell-substrate adhesion|negative regulation of DNA damage checkpoint|negative regulation of fat cell differentiation|neuron fate determination|positive regulation of fibroblast proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of lamellipodium assembly|positive regulation of Notch signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to wounding|signal transduction in response to DNA damage|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled-2 binding|transcription regulatory region DNA binding			kidney(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.244)		GAATCCTGCACGTGTGACTAc	0.532													10	51					0	0	1	0	0	
KRT72	140807	broad.mit.edu	37	12	52981443	52981443	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:52981443G>A	uc001sar.2	-	7	1368	c.1282C>T	c.(1282-1284)CGC>TGC	p.R428C	KRT72_uc001saq.2_Missense_Mutation_p.R428C|KRT72_uc010sns.1_Missense_Mutation_p.R386C|KRT72_uc010snt.1_Missense_Mutation_p.R240C	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	428	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		AGCAGCTTGCGGTAGGTGGCG	0.612													61	93					0	0	1	0	0	
HOXC6	3223	broad.mit.edu	37	12	54423566	54423566	+	Silent	SNP	C	T	T	rs61736613	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:54423566C>T	uc001sev.2	+	2	640	c.528C>T	c.(526-528)AAC>AAT	p.N176N	HOXC6_uc001ses.2_Silent_p.N94N|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	176	Homeobox.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						AGATCGCCAACGCGCTTTGCC	0.567													35	159					0	0	1	0	0	
GDF11	10220	broad.mit.edu	37	12	56142639	56142639	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:56142639G>A	uc001shq.2	+	2	752	c.715G>A	c.(715-717)GAC>AAC	p.D239N	GDF11_uc010spv.1_Missense_Mutation_p.D239N	NM_005811	NP_005802	O95390	GDF11_HUMAN	growth differentiation factor 11 precursor	239					growth|mesoderm development|skeletal system development	extracellular space	cytokine activity|growth factor activity			kidney(1)	1						GCAGAGCATCGACTTCAAGCA	0.612													9	29					0	0	1	0	0	
ERBB3	2065	broad.mit.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:56478854G>A	uc001sjh.2	+	3	503	c.310G>A	c.(310-312)GTG>ATG	p.V104M	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Missense_Mutation_p.V45M|ERBB3_uc001sjg.2_Missense_Mutation_p.V104M	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	104	Extracellular (Potential).		V -> M (in an ovarian mucinous carcinoma sample; somatic mutation).		cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity	p.V104M(1)		lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CAACCTCCGCGTGGTGCGAGG	0.517													31	172					0	0	1	0	0	
BAZ2A	11176	broad.mit.edu	37	12	56993984	56993984	+	Splice_Site	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:56993984C>T	uc001slq.1	-	24	5092	c.4898_splice	c.e24+1	p.I1633_splice	BAZ2A_uc001slp.1_Splice_Site_p.I1631_splice|BAZ2A_uc001slo.1_Splice_Site_p.I439_splice|BAZ2A_uc009zov.1_Splice_Site_p.I599_splice|BAZ2A_uc009zow.1_Splice_Site_p.I1601_splice	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A						chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GAGTCACTCACATCTCTGTAG	0.552													17	41					0	0	1	0	0	
PRIM1	5557	broad.mit.edu	37	12	57127957	57127957	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:57127957C>T	uc001smd.2	-	12	1281	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q		NM_000946	NP_000937	P49642	PRI1_HUMAN	DNA primase polypeptide 1	406					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	DNA primase activity|metal ion binding				0						TTCTCCTTTTCGGGATTTATC	0.308													19	30					0	0	1	0	0	
DDIT3	1649	broad.mit.edu	37	12	57910907	57910907	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:57910907C>A	uc001soi.2	-	4	375	c.195G>T	c.(193-195)GAG>GAT	p.E65D	MARS_uc001sof.1_Intron|DDIT3_uc009zps.2_Missense_Mutation_p.E88D|DDIT3_uc009zpt.2_Missense_Mutation_p.E88D	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	65					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						CTGGCTCCTCCTCAGTCAGCC	0.512			T	FUS	liposarcoma								52	49					3.68337e-26	4.07693e-26	1	1	0	
KIF5A	3798	broad.mit.edu	37	12	57966494	57966494	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:57966494C>T	uc001sor.1	+	15	1909	c.1701C>T	c.(1699-1701)AAC>AAT	p.N567N	KIF5A_uc010srr.1_Silent_p.N478N	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	567					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TTGTGGGCAACGGGGAGATTA	0.547													40	180					0	0	1	0	0	
GEFT	115557	broad.mit.edu	37	12	58006728	58006728	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:58006728C>T	uc001spb.2	+	2	573	c.113C>T	c.(112-114)GCG>GTG	p.A38V	GEFT_uc009zpy.2_Missense_Mutation_p.A77V|GEFT_uc001soz.1_Intron|GEFT_uc001spa.2_Intron|uc001spc.2_RNA|GEFT_uc001spd.2_5'Flank	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	38					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					TATTCCATTGCGGGCAGTGAG	0.493													117	176					0	0	1	0	0	
XPOT	11260	broad.mit.edu	37	12	64812733	64812733	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:64812733G>A	uc001ssb.2	+	6	774	c.348G>A	c.(346-348)GAG>GAA	p.E116E	XPOT_uc009zqm.1_Silent_p.E26E	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	116	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TTGTTACAGAGTATCTCACTA	0.438													6	118					0	0	1	0	0	
XPOT	11260	broad.mit.edu	37	12	64812808	64812808	+	Silent	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:64812808C>G	uc001ssb.2	+	6	849	c.423C>G	c.(421-423)CTC>CTG	p.L141L	XPOT_uc009zqm.1_Silent_p.L51L	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	141	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GAGTAGATCTCTACCTGCGAA	0.398													13	139					0	0	1	0	0	
TPH2	121278	broad.mit.edu	37	12	72335393	72335393	+	Silent	SNP	C	T	T	rs74510566		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:72335393C>T	uc009zrw.1	+	2	276	c.135C>T	c.(133-135)GAC>GAT	p.D45D	TPH2_uc001swy.2_Translation_Start_Site	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	45					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity	p.D45D(1)		ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GCAAAAATGACGACAAAGGCA	0.393													15	41					0	0	1	0	0	
C12orf12	196477	broad.mit.edu	37	12	91348255	91348255	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:91348255C>A	uc001tbj.2	-	1	699	c.265G>T	c.(265-267)GGA>TGA	p.G89*		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	89										central_nervous_system(1)|pancreas(1)	2						CAGGGCCCTCCCCAGCACCCC	0.637													14	37					0.0202918	0.0205032	1	1	0	
STAB2	55576	broad.mit.edu	37	12	104031830	104031830	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:104031830A>G	uc001tjw.2	+	8	932	c.746A>G	c.(745-747)CAT>CGT	p.H249R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	249	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGCCACCCTCATGCTCATTGT	0.507													74	114					0	0	1	0	0	
BTBD11	121551	broad.mit.edu	37	12	108010875	108010875	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:108010875G>C	uc001tmk.1	+	8	2532	c.2011G>C	c.(2011-2013)GAT>CAT	p.D671H	BTBD11_uc009zut.1_Missense_Mutation_p.D671H|BTBD11_uc001tmj.2_Missense_Mutation_p.D671H|BTBD11_uc001tml.1_Missense_Mutation_p.D208H	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	671	ANK 2.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						GCTCCTCCTGGATGCTGGGGC	0.587													60	99					0	0	1	0	0	
WSCD2	9671	broad.mit.edu	37	12	108600079	108600079	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:108600079C>A	uc001tms.2	+	3	1140	c.396C>A	c.(394-396)GGC>GGA	p.G132G	WSCD2_uc001tmt.2_Silent_p.G132G	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	132	WSC 1.					integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						AGTACATCGGCTGCTACCTGG	0.512													16	69					8.00594e-06	8.31776e-06	1	1	0	
SSH1	54434	broad.mit.edu	37	12	109181783	109181783	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:109181783G>A	uc001tnm.2	-	15	3218	c.3131C>T	c.(3130-3132)TCG>TTG	p.S1044L	SSH1_uc001tnl.2_Missense_Mutation_p.S732L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	1044	Interaction with YWHAG.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						GCTCATCCACGAAGGGCTCTT	0.547													37	100					0	0	1	0	0	
MMAB	326625	broad.mit.edu	37	12	109998867	109998867	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:109998867C>T	uc001tou.2	-	7	635	c.562G>A	c.(562-564)GTG>ATG	p.V188M	MMAB_uc001tov.2_RNA|MMAB_uc001tow.2_RNA|MMAB_uc010sxq.1_Missense_Mutation_p.V97M|MMAB_uc001tox.2_Missense_Mutation_p.V136M	NM_052845	NP_443077	Q96EY8	MMAB_HUMAN	cob(I)alamin adenosyltransferase precursor	188					cobalamin biosynthetic process	mitochondrion	ATP binding|cob(I)yrinic acid a,c-diamide adenosyltransferase activity				0					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CGGCGGCACACGGCCCGGCAG	0.438													31	49					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112647918	112647918	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:112647918C>T	uc009zwc.2	-	43	6520	c.6502G>A	c.(6502-6504)GCA>ACA	p.A2168T	C12orf51_uc001ttr.1_Missense_Mutation_p.A343T	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTGTCAGATGCCATGGCGAAA	0.597													21	77					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112669482	112669482	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:112669482G>A	uc009zwc.2	-	32	4787	c.4769C>T	c.(4768-4770)GCC>GTC	p.A1590V		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CCGCAGGGCGGCTGCAGCCTC	0.527													20	16					0	0	1	0	0	
OAS1	4938	broad.mit.edu	37	12	113354535	113354535	+	Silent	SNP	G	A	A	rs144257676	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:113354535G>A	uc001tud.2	+	4	982	c.876G>A	c.(874-876)ACG>ACA	p.T292T	OAS1_uc010syn.1_Silent_p.T291T|OAS1_uc010syo.1_3'UTR|OAS1_uc001tub.2_Silent_p.T292T|OAS1_uc001tuc.2_Silent_p.T292T|OAS1_uc009zwf.2_Silent_p.T291T	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	292					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						GGCAGCTCACGAAACCCAGGT	0.453													12	88					0	0	1	0	0	
TBX5	6910	broad.mit.edu	37	12	114793421	114793421	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:114793421A>G	uc001tvo.2	-	9	1968	c.1473T>C	c.(1471-1473)CAT>CAC	p.H491H	TBX5_uc001tvp.2_Silent_p.H491H|TBX5_uc001tvq.2_Silent_p.H441H	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	491					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TTGGCACGCCATGAGAGTAGA	0.602													15	69					0	0	1	0	0	
SIRT4	23409	broad.mit.edu	37	12	120750797	120750797	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:120750797T>C	uc001tyc.2	+	4	923	c.903T>C	c.(901-903)AAT>AAC	p.N301N		NM_012240	NP_036372	Q9Y6E7	SIRT4_HUMAN	sirtuin 4	301	Deacetylase sirtuin-type.				chromatin silencing|negative regulation of insulin secretion|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGAAACTGAATTCTCGTTGTG	0.493													32	136					0	0	1	0	0	
P2RX4	5025	broad.mit.edu	37	12	121660807	121660807	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:121660807C>T	uc001tzr.2	+	5	789	c.485C>T	c.(484-486)GCG>GTG	p.A162V	P2RX4_uc010szr.1_Intron|P2RX4_uc010szs.1_Intron|P2RX4_uc009zxc.2_Intron|P2RX4_uc001tzs.2_Missense_Mutation_p.A178V|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Missense_Mutation_p.A61V	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	162	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGTGAGGTGGCGGCCTGGTGC	0.522													15	26					0	0	1	0	0	
B3GNT4	79369	broad.mit.edu	37	12	122691861	122691861	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:122691861G>A	uc001ubx.2	+	3	1281	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	B3GNT4_uc001uby.2_Missense_Mutation_p.E330K	NM_030765	NP_110392	Q9C0J1	B3GN4_HUMAN	UDP-GlcNAc:betaGal	355	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000297)|Epithelial(86;0.000497)|BRCA - Breast invasive adenocarcinoma(302;0.222)		CAGCCCCCTCGAGATGTGGAC	0.627													9	38					0	0	1	0	0	
NCOR2	9612	broad.mit.edu	37	12	124826544	124826544	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:124826544G>A	uc010tba.1	-	34	5154	c.5037C>T	c.(5035-5037)CGC>CGT	p.R1679R	NCOR2_uc010tay.1_Silent_p.R1678R|NCOR2_uc010taz.1_Silent_p.R1662R|NCOR2_uc010tbb.1_Silent_p.R1671R|NCOR2_uc010tbc.1_Silent_p.R1661R|NCOR2_uc010tax.1_5'Flank	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1679					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CGGGGTAGCCGCGGATGAGGT	0.672													15	71					0	0	1	0	0	
AACS	65985	broad.mit.edu	37	12	125613904	125613904	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:125613904G>A	uc001uhc.2	+	14	1653	c.1447G>A	c.(1447-1449)GGC>AGC	p.G483S	AACS_uc001uhd.2_Missense_Mutation_p.G483S|AACS_uc009zyh.2_Intron|AACS_uc009zyi.2_Missense_Mutation_p.G81S	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	483					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GGGAGAGAGCGGCGAGCTGGT	0.522													15	290					0	0	1	0	0	
FZD10	11211	broad.mit.edu	37	12	130648101	130648101	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:130648101C>T	uc001uii.2	+	1	1070	c.614C>T	c.(613-615)GCG>GTG	p.A205V	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	205	Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		GAGAAGAGCGCGTCGTGCGCG	0.622													5	38					0	0	1	0	0	
PIWIL1	9271	broad.mit.edu	37	12	130856060	130856060	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:130856060G>T	uc001uik.2	+	21	2593	c.2503G>T	c.(2503-2505)GCC>TCC	p.A835S		NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	835	Piwi.				gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		TTGCCAGTACGCCCACAAGCT	0.453													62	118					2.32099e-22	2.56366e-22	1	1	0	
ULK1	8408	broad.mit.edu	37	12	132393282	132393282	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:132393282G>A	uc001uje.2	+	6	678	c.410G>A	c.(409-411)CGC>CAC	p.R137H		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	137	Protein kinase.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		ATCATCCACCGCGACCTGAAA	0.602													11	32					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132549334	132549334	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:132549334C>A	uc001ujn.2	+	47	8491	c.8456C>A	c.(8455-8457)CCG>CAG	p.P2819Q	EP400_uc001ujl.2_Missense_Mutation_p.P2818Q|EP400_uc001ujm.2_Missense_Mutation_p.P2738Q|EP400_uc001ujp.2_Missense_Mutation_p.P36Q	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2855					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		TCGCAGCCGCCGCAGCAGCAG	0.706													7	63					0.0293803	0.0296023	1	1	0	
EP400	57634	broad.mit.edu	37	12	132551511	132551511	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:132551511G>A	uc001ujn.2	+	48	8781	c.8746G>A	c.(8746-8748)GCA>ACA	p.A2916T	EP400_uc001ujl.2_Missense_Mutation_p.A2915T|EP400_uc001ujm.2_Missense_Mutation_p.A2835T|EP400_uc001ujp.2_Missense_Mutation_p.A126T	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2952					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		ACAGAAGGCAGCAGGTGCCCG	0.667													4	25					0	0	1	0	0	
ZMYM2	7750	broad.mit.edu	37	13	20608469	20608469	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:20608469G>A	uc001umr.2	+	12	2342	c.2044G>A	c.(2044-2046)GAA>AAA	p.E682K	ZMYM2_uc001ums.2_Missense_Mutation_p.E682K|ZMYM2_uc001umt.2_Missense_Mutation_p.E682K|ZMYM2_uc010tco.1_RNA|ZMYM2_uc001umv.2_Missense_Mutation_p.E62K|ZMYM2_uc001umw.2_Missense_Mutation_p.E135K	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	682	MYM-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		TACATATTGCGAATACTGTCA	0.388													24	61					0	0	1	0	0	
TNFRSF19	55504	broad.mit.edu	37	13	24233255	24233255	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:24233255C>T	uc001uov.1	+	6	576	c.512C>T	c.(511-513)GCT>GTT	p.A171V	TNFRSF19_uc001uot.2_Missense_Mutation_p.A171V|TNFRSF19_uc010tcu.1_Missense_Mutation_p.A39V|TNFRSF19_uc001uow.2_Missense_Mutation_p.A171V	NM_018647	NP_061117	Q9NS68	TNR19_HUMAN	tumor necrosis factor receptor superfamily,	171	Helical; (Potential).				apoptosis|induction of apoptosis|JNK cascade	integral to membrane|mitochondrion	tumor necrosis factor receptor activity			kidney(1)|skin(1)	2		all_cancers(29;3.4e-22)|all_epithelial(30;8.75e-19)|all_lung(29;5.09e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00193)|Epithelial(112;0.0137)|OV - Ovarian serous cystadenocarcinoma(117;0.0465)|GBM - Glioblastoma multiforme(144;0.184)|Lung(94;0.19)		ACGGCGCTGGCTGCCGTTATC	0.582													20	69					0	0	1	0	0	
MIPEP	4285	broad.mit.edu	37	13	24413805	24413805	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:24413805C>T	uc001uox.3	-	12	1421	c.1321G>A	c.(1321-1323)GCA>ACA	p.A441T		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	441					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		GGTTTGTCTGCTCGCTGAAAA	0.348													13	70					0	0	1	0	0	
FLT3	2322	broad.mit.edu	37	13	28592636	28592636	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:28592636T>G	uc001urw.2	-	20	2591	c.2509A>C	c.(2509-2511)ATG>CTG	p.M837L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Intron	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	837	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.I836del(3)|p.D835_M837>VFP(2)|p.M837P(2)|p.D835_S838del(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	GAATCACTCATGATATCTCGA	0.443			Mis|O		AML|ALL								18	65					0	0	1	0	0	
SLC46A3	283537	broad.mit.edu	37	13	29287531	29287531	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:29287531C>T	uc001usi.2	-	2	1316	c.346G>A	c.(346-348)GTT>ATT	p.V116I	SLC46A3_uc001usg.2_Missense_Mutation_p.V41I|SLC46A3_uc001usj.2_Missense_Mutation_p.V116I|SLC46A3_uc001ush.2_Missense_Mutation_p.V116I|SLC46A3_uc001usk.2_Missense_Mutation_p.V41I	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	116	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		CAGAGCCAAACGCTGGTTGCA	0.413													10	40					0	0	1	0	0	
STARD13	90627	broad.mit.edu	37	13	33703176	33703176	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:33703176C>T	uc001uuw.2	-	5	1764	c.1638G>A	c.(1636-1638)ACG>ACA	p.T546T	STARD13_uc001uuu.2_Silent_p.T538T|STARD13_uc001uuv.2_Silent_p.T428T|STARD13_uc001uux.2_Silent_p.T511T|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.T531T	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	546					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CACTGGGTGTCGTCCGACCTT	0.483													24	66					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39338488	39338488	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:39338488A>T	uc001uwv.2	+	3	5620	c.5311A>T	c.(5311-5313)ATC>TTC	p.I1771F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1771	Calx-beta 1.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TTGGGCATGGATCTCCTTTGA	0.343													4	81					0	0	1	0	0	
STOML3	161003	broad.mit.edu	37	13	39541050	39541050	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:39541050G>A	uc001uwx.2	-	7	926	c.788C>T	c.(787-789)ACG>ATG	p.T263M	STOML3_uc010tez.1_Missense_Mutation_p.T254M	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	263	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		AAACACAATCGTAGAATTCTT	0.522													20	68					0	0	1	0	0	
ZC3H13	23091	broad.mit.edu	37	13	46542109	46542109	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:46542109C>T	uc010tfw.1	-	14	3857	c.3851G>A	c.(3850-3852)CGA>CAA	p.R1284Q	ZC3H13_uc001vaq.2_5'UTR|ZC3H13_uc001vas.1_Missense_Mutation_p.R1284Q	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1284	Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		ATGGACCTGTCGATCTGACTC	0.323													47	149					0	0	1	0	0	
KCNRG	283518	broad.mit.edu	37	13	50590127	50590127	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:50590127G>A	uc001vdu.2	+	1	738	c.498G>A	c.(496-498)CTG>CTA	p.L166L	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_Silent_p.L166L|TRIM13_uc001vdp.1_3'UTR|TRIM13_uc001vdq.1_3'UTR|TRIM13_uc001vdr.1_3'UTR|TRIM13_uc001vds.1_3'UTR	NM_173605	NP_775876	Q8N5I3	KCNRG_HUMAN	potassium channel regulator isoform 1	166						voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.48e-10)|COAD - Colon adenocarcinoma(199;0.204)		TACTTCCACTGCCTCCACAAA	0.453													19	58					0	0	1	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88329509	88329509	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:88329509G>A	uc001vln.2	+	2	2085	c.1866G>A	c.(1864-1866)ACG>ACA	p.T622T	SLITRK5_uc010tic.1_Silent_p.T381T	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	622	Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TAGTTTCCACGCCCACACCCT	0.607													46	160					0	0	1	0	0	
MBNL2	10150	broad.mit.edu	37	13	98009823	98009823	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:98009823G>A	uc010aft.2	+	6	1708	c.892G>A	c.(892-894)GTC>ATC	p.V298I	MBNL2_uc001vmz.2_Missense_Mutation_p.V298I|MBNL2_uc001vna.2_Missense_Mutation_p.V298I|MBNL2_uc001vnb.2_RNA|MBNL2_uc010tij.1_Missense_Mutation_p.V143I|MBNL2_uc001vnc.2_Missense_Mutation_p.V31I	NM_144778	NP_659002	Q5VZF2	MBNL2_HUMAN	muscleblind-like 2 isoform 1	298					mRNA processing|regulation of RNA splicing|RNA splicing	cytoplasm|nucleus	RNA binding|zinc ion binding				0	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.218)			TAACCCCAGCGTCTTGCACTA	0.532													31	106					0	0	1	0	0	
DOCK9	23348	broad.mit.edu	37	13	99533825	99533825	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:99533825C>A	uc001vnt.2	-	25	2790	c.2735G>T	c.(2734-2736)AGG>ATG	p.R912M	DOCK9_uc001vnw.2_Missense_Mutation_p.R911M|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.R912M|DOCK9_uc010tis.1_Missense_Mutation_p.R911M|DOCK9_uc010tit.1_Missense_Mutation_p.R912M|DOCK9_uc010afu.1_Missense_Mutation_p.R758M	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	912					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AACATATGACCTCAAGTGGCT	0.403													4	10					0.184627	0.184627	1	1	0	
NALCN	259232	broad.mit.edu	37	13	101735484	101735484	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:101735484C>T	uc001vox.1	-	32	3838	c.3649G>A	c.(3649-3651)GCA>ACA	p.A1217T		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1217	Helical; Name=S1 of repeat IV; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACGAGTAATGCGATTGTCCTC	0.423													16	57					0	0	1	0	0	
ING1	3621	broad.mit.edu	37	13	111372025	111372025	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:111372025C>T	uc001vri.2	+	2	1447	c.1015C>T	c.(1015-1017)CGA>TGA	p.R339*	ING1_uc001vrf.2_Nonsense_Mutation_p.R152*|ING1_uc001vrg.2_Nonsense_Mutation_p.R127*|ING1_uc001vrh.2_Nonsense_Mutation_p.R196*	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	339					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			CAAGGCGGAGCGAGAGGCGTC	0.627													17	50					0	0	1	0	0	
F7	2155	broad.mit.edu	37	13	113772750	113772750	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr13:113772750G>A	uc001vsv.2	+	9	880	c.829G>A	c.(829-831)GAC>AAC	p.D277N	F7_uc001vsw.2_Missense_Mutation_p.D255N|F7_uc010tjt.1_Missense_Mutation_p.D208N	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	277	Peptidase S1.		D -> N (in FA7D).		anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CAGCGAGCACGACGGGGATGA	0.682													6	115					0	0	1	0	0	
RBM23	55147	broad.mit.edu	37	14	23375437	23375437	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:23375437C>T	uc001whg.2	-	5	567	c.368G>A	c.(367-369)CGT>CAT	p.R123H	RBM23_uc001whh.2_Missense_Mutation_p.R107H|RBM23_uc001whi.2_Missense_Mutation_p.R107H|RBM23_uc010tne.1_Translation_Start_Site|RBM23_uc001whj.2_Translation_Start_Site|RBM23_uc001whk.1_Missense_Mutation_p.R123H	NM_001077351	NP_001070819	Q86U06	RBM23_HUMAN	RNA binding motif protein 23 isoform 1	123	Arg-rich.				mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.0128)		GTAATGCACACGATCCTCACG	0.493													13	60					0	0	1	0	0	
HOMEZ	57594	broad.mit.edu	37	14	23746064	23746064	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:23746064G>A	uc001wja.2	-	2	521	c.373C>T	c.(373-375)CGA>TGA	p.R125*	HOMEZ_uc001wjb.2_Nonsense_Mutation_p.R127*	NM_020834	NP_065885	Q8IX15	HOMEZ_HUMAN	homeodomain leucine zipper protein	125						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00643)		TAGACTACTCGGGCTCGAGTC	0.532													49	137					0	0	1	0	0	
CPNE6	9362	broad.mit.edu	37	14	24546405	24546405	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:24546405G>A	uc001wll.2	+	15	1441	c.1342G>A	c.(1342-1344)GAC>AAC	p.D448N	CPNE6_uc010tnv.1_Missense_Mutation_p.D503N|CPNE6_uc001wlm.2_Missense_Mutation_p.D273N|CPNE6_uc001wln.2_Missense_Mutation_p.D116N	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	448	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		TGTGGTGAGCGACATGGCTGA	0.597													12	61					0	0	1	0	0	
IPO4	79711	broad.mit.edu	37	14	24651519	24651519	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:24651519A>C	uc001wmv.1	-	25	2694	c.2563T>G	c.(2563-2565)TTT>GTT	p.F855V	IPO4_uc001wmt.1_Missense_Mutation_p.F333V|IPO4_uc001wmu.2_Missense_Mutation_p.F517V|IPO4_uc001wmx.1_Missense_Mutation_p.F719V|IPO4_uc001wmy.1_Missense_Mutation_p.F719V|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Missense_Mutation_p.F855V	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	855					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		AAACCGGCAAAGAATGGGGCA	0.612													5	31					0	0	1	0	0	
GZMH	2999	broad.mit.edu	37	14	25077550	25077550	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:25077550G>A	uc001wpr.1	-	2	169	c.124C>T	c.(124-126)CAA>TAA	p.Q42*	GZMH_uc010aly.1_Nonsense_Mutation_p.Q42*|GZMH_uc010alz.1_Nonsense_Mutation_p.Q42*	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	42	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		CTCTTCTCTTGCAGAAACTGA	0.547													61	161					0	0	1	0	0	
NPAS3	64067	broad.mit.edu	37	14	33684481	33684481	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:33684481G>A	uc001wru.2	+	3	298	c.234G>A	c.(232-234)TTG>TTA	p.L78L	NPAS3_uc001wrs.2_Silent_p.L48L|NPAS3_uc001wrt.2_Silent_p.L48L|NPAS3_uc001wrv.2_Silent_p.L48L|NPAS3_uc001wrw.2_5'UTR	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	78	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		CCAAGTTGTTGCCTCTTCCTG	0.473													32	86					0	0	1	0	0	
MIPOL1	145282	broad.mit.edu	37	14	37969213	37969213	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:37969213T>A	uc001wuc.2	+	13	1635	c.1132T>A	c.(1132-1134)TCC>ACC	p.S378T	MIPOL1_uc010amr.2_RNA|MIPOL1_uc001wub.3_Missense_Mutation_p.S347T|MIPOL1_uc001wud.2_Missense_Mutation_p.S378T|MIPOL1_uc010ams.2_Missense_Mutation_p.S378T|MIPOL1_uc001wue.2_Missense_Mutation_p.S347T|MIPOL1_uc010amt.2_Missense_Mutation_p.S197T	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	378	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		GAACATTGTTTCCATCACTCA	0.368													30	66					0	0	1	0	0	
LRFN5	145581	broad.mit.edu	37	14	42356114	42356114	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:42356114G>A	uc001wvm.2	+	3	1484	c.286G>A	c.(286-288)GCT>ACT	p.A96T	LRFN5_uc010ana.2_Missense_Mutation_p.A96T	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	96	Extracellular (Potential).|LRR 2.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TCATGCTTTCGCTGACCTACG	0.348										HNSCC(30;0.082)			19	48					0	0	1	0	0	
LRFN5	145581	broad.mit.edu	37	14	42360855	42360855	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:42360855C>T	uc001wvm.2	+	4	2986	c.1788C>T	c.(1786-1788)CAC>CAT	p.H596H	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	596	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CTGTGGGACACGAAGAGAATG	0.473										HNSCC(30;0.082)			16	45					0	0	1	0	0	
ATP5S	27109	broad.mit.edu	37	14	50789395	50789395	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:50789395G>A	uc001wxw.1	+	3	1011	c.319G>A	c.(319-321)GCC>ACC	p.A107T	ATP5S_uc001wxv.2_Missense_Mutation_p.A107T|ATP5S_uc001wxx.1_Missense_Mutation_p.A107T|ATP5S_uc010ant.1_Missense_Mutation_p.A79T	NM_001003803	NP_001003803	Q99766	ATP5S_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	107					ATP biosynthetic process	mitochondrial inner membrane|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity			ovary(1)|skin(1)	2	all_epithelial(31;0.000636)|Breast(41;0.0102)			OV - Ovarian serous cystadenocarcinoma(311;0.0685)		GGCGATCGACGCCACCGACTC	0.488													24	58					0	0	1	0	0	
CGRRF1	10668	broad.mit.edu	37	14	55004968	55004968	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:55004968G>A	uc001xay.2	+	6	957	c.866G>A	c.(865-867)TGC>TAC	p.C289Y	CGRRF1_uc001xaz.2_RNA	NM_006568	NP_006559	Q99675	CGRF1_HUMAN	cell growth regulator with ring finger domain 1	289	RING-type.				cell cycle arrest|negative regulation of cell proliferation|response to stress		zinc ion binding			ovary(1)	1						CTCTTACCATGCAGACACACA	0.468													17	54					0	0	1	0	0	
GPR135	64582	broad.mit.edu	37	14	59930776	59930776	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:59930776C>T	uc010apj.2	-	1	1284	c.1169G>A	c.(1168-1170)CGC>CAC	p.R390H	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	390	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		GTTGGGATTGCGGATGGCGTA	0.652													13	49					0	0	1	0	0	
DHRS7	51635	broad.mit.edu	37	14	60619659	60619659	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:60619659G>A	uc001xes.2	-	4	815	c.631C>T	c.(631-633)CGG>TGG	p.R211W	C14orf135_uc001xeq.2_Intron|DHRS7_uc001xet.2_Missense_Mutation_p.R161W|DHRS7_uc001xeu.2_Missense_Mutation_p.R211W	NM_016029	NP_057113	Q9Y394	DHRS7_HUMAN	dehydrogenase/reductase (SDR family) member 7	211							binding|oxidoreductase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.121)		AGCCTTACCCGGAGAGCATGC	0.453													17	31					0	0	1	0	0	
DCAF5	8816	broad.mit.edu	37	14	69520750	69520750	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:69520750C>T	uc001xkp.2	-	9	2872	c.2653G>A	c.(2653-2655)GGG>AGG	p.G885R	DCAF5_uc001xkq.2_Missense_Mutation_p.G884R	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	885						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						ATTTCAGACCCGCAACAATCT	0.577													12	66					0	0	1	0	0	
ZFYVE1	53349	broad.mit.edu	37	14	73440842	73440842	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:73440842C>T	uc001xnm.2	-	11	2687	c.2047G>A	c.(2047-2049)GAG>AAG	p.E683K	ZFYVE1_uc001xnl.2_Missense_Mutation_p.E268K|ZFYVE1_uc010arj.2_Missense_Mutation_p.E669K	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	683						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		TGCACGGCCTCGCCCACCTTC	0.557													37	71					0	0	1	0	0	
YLPM1	56252	broad.mit.edu	37	14	75295977	75295977	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:75295977C>T	uc001xqj.3	+	19	6349	c.6225C>T	c.(6223-6225)AGC>AGT	p.S2075S	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1880					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CCATTGCCAGCAGAATGGAGG	0.473													21	64					0	0	1	0	0	
FLVCR2	55640	broad.mit.edu	37	14	76045412	76045412	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:76045412G>A	uc001xrs.2	+	1	473	c.97G>A	c.(97-99)GTC>ATC	p.V33I		NM_017791	NP_060261	Q9UPI3	FLVC2_HUMAN	feline leukemia virus subgroup C cellular	33	8 X 6 AA tandem repeats of P-S-[VS]-S- [VIAG]-[HNP].|2.				transmembrane transport	integral to membrane|plasma membrane	heme binding|heme transporter activity				0				BRCA - Breast invasive adenocarcinoma(234;0.029)		CCATCCCAGCGTCTCGGTCCA	0.642													67	111					0	0	1	0	0	
NRXN3	9369	broad.mit.edu	37	14	78710050	78710050	+	RNA	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:78710050G>A	uc001xum.1	+	2		c.1407G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGTGGTGAGCGTCCCTGTGAA	0.567													24	51					0	0	1	0	0	
KCNK13	56659	broad.mit.edu	37	14	90528631	90528631	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:90528631G>A	uc001xye.1	+	1	524	c.82G>A	c.(82-84)GTG>ATG	p.V28M		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	28	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CGCGCTCATCGTGCTCTACCT	0.731													7	5					0	0	1	0	0	
BCL11B	64919	broad.mit.edu	37	14	99641282	99641282	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:99641282C>T	uc001yga.2	-	4	2158	c.1891G>A	c.(1891-1893)GGG>AGG	p.G631R	BCL11B_uc001ygb.2_Missense_Mutation_p.G560R	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	631	Gly-rich.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		cccgcgtccccgccgcccgcc	0.383			T	TLX3	T-ALL								3	8					0	0	1	0	0	
BCL11B	64919	broad.mit.edu	37	14	99641913	99641913	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:99641913C>T	uc001yga.2	-	4	1527	c.1260G>A	c.(1258-1260)CCG>CCA	p.P420P	BCL11B_uc001ygb.2_Silent_p.P349P	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	420						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CTGGCGGCTGCGGGGGCGGCG	0.682			T	TLX3	T-ALL								4	13					0	0	1	0	0	
WDR25	79446	broad.mit.edu	37	14	100992293	100992293	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:100992293C>T	uc010avx.2	+	5	1281	c.1188C>T	c.(1186-1188)GAC>GAT	p.D396D	WDR25_uc001yhm.2_Silent_p.D388D|WDR25_uc001yhn.2_Silent_p.D396D|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Silent_p.D139D	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	396	WD 4.										0		Melanoma(154;0.212)				GCAGCACAGACGCTTCCACCC	0.547													23	61					0	0	1	0	0	
C14orf73	91828	broad.mit.edu	37	14	103573763	103573763	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:103573763G>A	uc001ymk.2	+	8	1660	c.1584G>A	c.(1582-1584)CCG>CCA	p.P528P		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	528											0		Melanoma(154;0.155)	Epithelial(46;0.221)			GTCCCCAGCCGCTCTTCAGGG	0.637													14	59					0	0	1	0	0	
ZFYVE21	79038	broad.mit.edu	37	14	104199060	104199060	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:104199060C>T	uc001yoc.2	+	6	664	c.630C>T	c.(628-630)GGC>GGT	p.G210G	ZFYVE21_uc001yod.2_Silent_p.G228G|ZFYVE21_uc001yoe.2_RNA	NM_024071	NP_076976	Q9BQ24	ZFY21_HUMAN	zinc finger, FYVE domain containing 21	210						cytoplasmic membrane-bounded vesicle|focal adhesion	metal ion binding				0		Melanoma(154;0.226)		Epithelial(152;0.245)		TGACTGTGGGCAGGAGGCAGG	0.632													11	129					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106173866	106173866	+	RNA	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:106173866G>A	uc010tyt.1	-	3633		c.60032C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						CGACGGCGGCGGCAGCAGGTG	0.687													3	38					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106311932	106311932	+	RNA	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:106311932G>T	uc010tyt.1	-	3608		c.56991C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Missense_Mutation_p.A41E|uc001ysk.1_Missense_Mutation_p.A41E|uc001ysl.1_Missense_Mutation_p.A41E|uc001ysm.1_5'UTR|uc001ysn.1_5'UTR|uc001yso.1_5'UTR					Parts of antibodies, mostly variable regions.												0						TATCAAGCATGCCAGGACCAC	0.562													20	59					8.34094e-07	8.71673e-07	1	1	0	
LOC646214	646214	broad.mit.edu	37	15	21936776	21936776	+	RNA	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:21936776G>T	uc010tzj.1	-	1		c.3964C>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TTGCTATTAGGCACAAGGCCC	0.433													10	172					0.00010058	0.00010389	1	1	0	
CYFIP1	23191	broad.mit.edu	37	15	22997854	22997854	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:22997854C>T	uc001yus.2	+	27	3204	c.3100C>T	c.(3100-3102)CGA>TGA	p.R1034*	CYFIP1_uc001yut.2_Nonsense_Mutation_p.R1034*|CYFIP1_uc001yuu.2_Nonsense_Mutation_p.R603*|CYFIP1_uc001yuv.2_Nonsense_Mutation_p.R228*	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	1034					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		CATCTTGCCGCGAGTCCATGT	0.572													32	113					0	0	1	0	0	
NDN	4692	broad.mit.edu	37	15	23932077	23932077	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:23932077C>T	uc001ywk.2	-	1	374	c.288G>A	c.(286-288)GCG>GCA	p.A96A		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	96					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		GCACCAGCTGCGCCGGGGCTG	0.677									Prader-Willi_syndrome				13	42					0	0	1	0	0	
GABRB3	2562	broad.mit.edu	37	15	26866614	26866614	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:26866614G>T	uc001zaz.2	-	4	450	c.308C>A	c.(307-309)CCT>CAT	p.P103H	GABRB3_uc010uae.1_Missense_Mutation_p.P18H|GABRB3_uc001zba.2_Missense_Mutation_p.P103H|GABRB3_uc001zbb.2_Missense_Mutation_p.P159H|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	103	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAGGTTGAGAGGGATCCCAGA	0.418													24	75					2.48779e-11	2.67588e-11	1	1	0	
OTUD7A	161725	broad.mit.edu	37	15	31776256	31776256	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:31776256G>A	uc001zfq.2	-	11	2115	c.2022C>T	c.(2020-2022)CGC>CGT	p.R674R	OTUD7A_uc001zfr.2_Silent_p.R681R	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	674						cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		tagcggcgTCGCGGCGCCGCT	0.488													11	4					0	0	1	0	0	
AQR	9716	broad.mit.edu	37	15	35174732	35174732	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:35174732G>A	uc001ziv.2	-	27	3317	c.3136C>T	c.(3136-3138)CGA>TGA	p.R1046*		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	1046						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		AAGTCATGTCGTTTTAAGGCA	0.353													8	29					0	0	1	0	0	
ZNF770	54989	broad.mit.edu	37	15	35273570	35273570	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:35273570G>A	uc001ziw.2	-	3	2377	c.2066C>T	c.(2065-2067)TCG>TTG	p.S689L		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	689					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		TTACATAACCGAATCTAAGGC	0.388													9	34					0	0	1	0	0	
PLA2G4D	283748	broad.mit.edu	37	15	42379564	42379564	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:42379564C>T	uc001zox.2	-	3	284	c.189G>A	c.(187-189)ACG>ACA	p.T63T		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	63	C2.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		TGTCGGTGAGCGTCTTGGTCT	0.552													45	151					0	0	1	0	0	
CDAN1	146059	broad.mit.edu	37	15	43021535	43021535	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:43021535C>T	uc001zql.2	-	18	2550	c.2433G>A	c.(2431-2433)TCG>TCA	p.S811S	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Silent_p.S137S	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	811						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		CTGACACCCACGAAGCGAGCA	0.567													26	86					0	0	1	0	0	
ELL3	80237	broad.mit.edu	37	15	44066858	44066858	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:44066858T>G	uc001zsw.1	-	7	1162	c.759A>C	c.(757-759)GAA>GAC	p.E253D	ELL3_uc001zsv.1_Missense_Mutation_p.E207D|ELL3_uc001zsx.1_Missense_Mutation_p.E138D|uc001zsy.2_5'Flank	NM_025165	NP_079441	Q9HB65	ELL3_HUMAN	elongation factor RNA polymerase II-like 3	253					positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription elongation from RNA polymerase II promoter	transcription elongation factor complex				ovary(1)	1		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;7.81e-07)		GCTCCCAATCTTCTCCCTCTT	0.473													41	151					0	0	1	0	0	
SPG11	80208	broad.mit.edu	37	15	44856842	44856842	+	Missense_Mutation	SNP	A	G	G	rs149711747		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:44856842A>G	uc001ztx.2	-	39	7085	c.7054T>C	c.(7054-7056)TAC>CAC	p.Y2352H	SPG11_uc010bdw.2_Missense_Mutation_p.Y482H|SPG11_uc010ueh.1_Missense_Mutation_p.Y2239H|SPG11_uc010uei.1_Intron	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	2352	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ACTTGCTGGTATAAAATTTCA	0.378													21	42					0	0	1	0	0	
SORD	6652	broad.mit.edu	37	15	45364620	45364620	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:45364620T>C	uc001zul.3	+	8	1033	c.892T>C	c.(892-894)TTT>CTT	p.F298L	SORD_uc001zum.3_Missense_Mutation_p.F298L|SORD_uc010bdz.2_Missense_Mutation_p.F219L	NM_003104	NP_003095	Q00796	DHSO_HUMAN	sorbitol dehydrogenase	298					fructose biosynthetic process|glucose metabolic process|L-xylitol catabolic process|sorbitol catabolic process|sperm motility	cilium|extracellular space|flagellum|membrane fraction|mitochondrial membrane|soluble fraction	L-iditol 2-dehydrogenase activity|NAD binding|sugar binding|zinc ion binding				0		all_cancers(109;3.43e-12)|all_epithelial(112;2.33e-10)|Lung NSC(122;6.01e-07)|all_lung(180;4.38e-06)|Melanoma(134;0.0122)		all cancers(107;1.6e-18)|GBM - Glioblastoma multiforme(94;4.95e-07)|COAD - Colon adenocarcinoma(120;0.0704)|Colorectal(133;0.0706)	NADH(DB00157)	CAAGGGCGTGTTTCGATACTG	0.617													9	6					0	0	1	0	0	
DUOX2	50506	broad.mit.edu	37	15	45392007	45392007	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:45392007C>T	uc010bea.2	-	25	3471	c.3268G>A	c.(3268-3270)GTC>ATC	p.V1090I	DUOX2_uc001zun.2_Missense_Mutation_p.V1090I	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1090	Interaction with TXNDC11 (By similarity).|Helical; (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		ATGAAGGAGACGCTGGCCGCC	0.577													19	77					0	0	1	0	0	
AP4E1	23431	broad.mit.edu	37	15	51250726	51250726	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:51250726C>T	uc001zyx.1	+	14	1616	c.1586C>T	c.(1585-1587)ACG>ATG	p.T529M		NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	529					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		GATAAGGAAACGCCAGAGGAA	0.338													11	28					0	0	1	0	0	
MYO5A	4644	broad.mit.edu	37	15	52668563	52668563	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:52668563G>A	uc002aby.2	-	19	2645	c.2401C>T	c.(2401-2403)CGG>TGG	p.R801W	MYO5A_uc002abx.3_Missense_Mutation_p.R801W|MYO5A_uc010uge.1_Missense_Mutation_p.R670W	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	801	IQ 2.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		TGGTAGCCCCGCACGTATCTC	0.562													3	41					0	0	1	0	0	
CGNL1	84952	broad.mit.edu	37	15	57730401	57730401	+	Silent	SNP	G	A	A	rs143019005		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:57730401G>A	uc002aeg.2	+	2	280	c.204G>A	c.(202-204)TCG>TCA	p.S68S	CGNL1_uc010bfw.2_Silent_p.S68S	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	68	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CAGGCACATCGTTTTCTGAAA	0.493													14	93					0	0	1	0	0	
SLTM	79811	broad.mit.edu	37	15	59182634	59182634	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:59182634C>T	uc002afp.2	-	15	2013	c.1925G>A	c.(1924-1926)CGT>CAT	p.R642H	SLTM_uc002afn.2_Missense_Mutation_p.R184H|SLTM_uc002afo.2_Missense_Mutation_p.R624H|SLTM_uc002afq.2_Missense_Mutation_p.R211H|SLTM_uc010bgd.2_Missense_Mutation_p.R211H	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	642	Arg/Glu-rich.|Potential.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						TCGCTCTCGACGCTCTCTCTC	0.403													25	90					0	0	1	0	0	
IGDCC3	9543	broad.mit.edu	37	15	65627671	65627671	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:65627671C>T	uc002aos.2	-	4	895	c.643G>A	c.(643-645)GCC>ACC	p.A215T		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	215	Extracellular (Potential).|Ig-like C2-type 2.									ovary(3)	3						CGGATACTGGCGATGTTTGAG	0.607													25	83					0	0	1	0	0	
LBXCOR1	390598	broad.mit.edu	37	15	68119726	68119726	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:68119726A>G	uc002aqy.1	+	3	1428	c.1428A>G	c.(1426-1428)GCA>GCG	p.A476A		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	520					negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						tggcggcggcagcggcggcgg	0.507													3	7					0	0	1	0	0	
PIAS1	8554	broad.mit.edu	37	15	68466135	68466135	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:68466135C>T	uc002aqz.2	+	9	1170	c.1074C>T	c.(1072-1074)GAC>GAT	p.D358D	PIAS1_uc002ara.2_5'Flank	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	358	SP-RING-type.				androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						AATGTTTTGACGCAACTCTTT	0.378													7	26					0	0	1	0	0	
FEM1B	10116	broad.mit.edu	37	15	68583314	68583314	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:68583314G>A	uc002arg.2	+	2	2233	c.1618G>A	c.(1618-1620)GTT>ATT	p.V540I	FEM1B_uc002arh.2_Missense_Mutation_p.V460I	NM_015322	NP_056137	Q9UK73	FEM1B_HUMAN	fem-1 homolog b	540	ANK 8.				apoptosis|induction of apoptosis|regulation of DNA damage checkpoint|regulation of ubiquitin-protein ligase activity	cytoplasm|nucleus	death receptor binding|ubiquitin-protein ligase activity				0						TCATATTATCGTTCAGTACAA	0.473													49	117					0	0	1	0	0	
NOX5	79400	broad.mit.edu	37	15	69329504	69329504	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:69329504G>A	uc002ars.1	+	8	1345	c.1325G>A	c.(1324-1326)CGC>CAC	p.R442H	NOX5_uc002arp.1_Missense_Mutation_p.R424H|NOX5_uc002arq.1_Missense_Mutation_p.R396H|NOX5_uc010bid.1_Missense_Mutation_p.R407H|NOX5_uc002arr.1_Missense_Mutation_p.R414H|NOX5_uc010bie.1_Missense_Mutation_p.R242H|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	442	FAD-binding FR-type.|Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCAGTGTCCCGCATGGCAGCC	0.562													15	39					0	0	1	0	0	
PAQR5	54852	broad.mit.edu	37	15	69677138	69677138	+	Missense_Mutation	SNP	C	T	T	rs142266731	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:69677138C>T	uc002arz.2	+	5	680	c.302C>T	c.(301-303)GCG>GTG	p.A101V	PAQR5_uc002asa.2_Missense_Mutation_p.A101V	NM_017705	NP_060175	Q9NXK6	MPRG_HUMAN	progestin and adipoQ receptor family member V	101	Helical; Name=2; (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane	receptor activity|steroid binding			ovary(2)	2						TCCAGCTGTGCGCACACCTTC	0.522													37	78					0	0	1	0	0	
ADPGK	83440	broad.mit.edu	37	15	73052857	73052857	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:73052857G>A	uc002avg.3	-	4	628	c.534C>T	c.(532-534)TGC>TGT	p.C178C	ADPGK_uc010ukw.1_Silent_p.C120C|ADPGK_uc002avf.3_Silent_p.C178C|ADPGK_uc002avi.3_Silent_p.C56C|ADPGK_uc002avh.3_5'UTR	NM_031284	NP_112574	Q9BRR6	ADPGK_HUMAN	ADP-dependent glucokinase	178	ADPK.				glycolysis	extracellular region	ADP-specific glucokinase activity|metal ion binding				0						CAACTGGACCGCAAAGAAGAA	0.502													21	89					0	0	1	0	0	
STOML1	9399	broad.mit.edu	37	15	74281035	74281035	+	Missense_Mutation	SNP	G	A	A	rs116083516	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:74281035G>A	uc002awe.2	-	4	570	c.499C>T	c.(499-501)CGC>TGC	p.R167C	STOML1_uc002awf.2_Missense_Mutation_p.R167C|STOML1_uc010bje.2_Missense_Mutation_p.R167C|STOML1_uc010uld.1_Missense_Mutation_p.R125C|STOML1_uc002awh.2_Missense_Mutation_p.R117C|STOML1_uc002awg.2_Missense_Mutation_p.R117C|STOML1_uc002awi.2_Missense_Mutation_p.R80C	NM_004809	NP_004800	Q9UBI4	STML1_HUMAN	stomatin (EPB72)-like 1	167	Cytoplasmic (Potential).					integral to membrane	sterol binding			skin(1)	1						GCTGTCATGCGTGTGGCTGTG	0.597													34	107					0	0	1	0	0	
CSK	1445	broad.mit.edu	37	15	75091203	75091203	+	Missense_Mutation	SNP	C	T	T	rs144688425		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:75091203C>T	uc010bkb.1	+	5	349	c.166C>T	c.(166-168)CGT>TGT	p.R56C	CSK_uc010bka.2_Silent_p.A158A|CSK_uc002ays.2_Missense_Mutation_p.R56C|CSK_uc010bkc.1_5'Flank	NM_001127190	NP_001120662	P41240	CSK_HUMAN	c-src tyrosine kinase	56	Interaction with PTPN8 (By similarity).|SH3.				blood coagulation|epidermal growth factor receptor signaling pathway|T cell costimulation|T cell receptor signaling pathway	centrosome|cytosol|Golgi apparatus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein C-terminus binding			lung(2)|central_nervous_system(1)	3						CAAGGTGGGCCGTGAGGGCAT	0.632													12	46					0	0	1	0	0	
C15orf39	56905	broad.mit.edu	37	15	75500385	75500385	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:75500385G>A	uc002azp.3	+	2	2316	c.1996G>A	c.(1996-1998)GTG>ATG	p.V666M	C15orf39_uc002azq.3_Missense_Mutation_p.V666M|C15orf39_uc002azr.3_Missense_Mutation_p.V64M	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	666											0						GCCTGCAGCCGTGGTCCCGTC	0.607													28	86					0	0	1	0	0	
CTSH	1512	broad.mit.edu	37	15	79220087	79220087	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:79220087C>T	uc002ben.2	-	10	728	c.631G>A	c.(631-633)GGC>AGC	p.G211S	CTSH_uc010unf.1_RNA|CTSH_uc010bll.1_Missense_Mutation_p.G63S	NM_148979	NP_683880	P09668	CATH_HUMAN	cathepsin H isoform b precursor	223					protein destabilization|proteolysis	lysosome	cysteine-type endopeptidase activity			central_nervous_system(2)|large_intestine(1)	3						TTGACAAAGCCGATGGCCTTT	0.532													23	66					0	0	1	0	0	
EFTUD1	79631	broad.mit.edu	37	15	82444713	82444713	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:82444713T>C	uc002bgt.1	-	18	2251	c.2082A>G	c.(2080-2082)GAA>GAG	p.E694E	EFTUD1_uc002bgs.1_Silent_p.E65E|EFTUD1_uc002bgu.1_Silent_p.E643E	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	694					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TTGTGATTGTTTCTCTGAATG	0.333													30	86					0	0	1	0	0	
MAN2A2	4122	broad.mit.edu	37	15	91453768	91453768	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:91453768G>A	uc010bnz.2	+	11	1730	c.1615G>A	c.(1615-1617)GCT>ACT	p.A539T	MAN2A2_uc010boa.2_Missense_Mutation_p.A581T|MAN2A2_uc002bqc.2_Missense_Mutation_p.A539T|MAN2A2_uc010uql.1_Missense_Mutation_p.A201T|MAN2A2_uc010uqm.1_Missense_Mutation_p.A118T|MAN2A2_uc010uqn.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	539	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			TGCAGCTCACGCTCGCCGCTC	0.632													23	46					0	0	1	0	0	
PCSK6	5046	broad.mit.edu	37	15	101938761	101938761	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr15:101938761C>T	uc002bwy.2	-	8	1158	c.844G>A	c.(844-846)GAT>AAT	p.D282N	PCSK6_uc010bpd.2_Missense_Mutation_p.D152N|PCSK6_uc010bpe.2_Missense_Mutation_p.D282N|PCSK6_uc002bxa.2_Missense_Mutation_p.D282N|PCSK6_uc002bxb.2_Missense_Mutation_p.D282N|PCSK6_uc002bxc.1_Missense_Mutation_p.D282N|PCSK6_uc002bxd.1_Missense_Mutation_p.D282N|PCSK6_uc002bxe.2_Missense_Mutation_p.D282N|PCSK6_uc002bxg.1_Missense_Mutation_p.D282N	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	282	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCTGTGACATCGCCGTCCAGC	0.652													20	61					0	0	1	0	0	
SOLH	6650	broad.mit.edu	37	16	602866	602866	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:602866C>T	uc002chi.2	+	13	3271	c.2908C>T	c.(2908-2910)CGT>TGT	p.R970C	SOLH_uc002chj.2_Missense_Mutation_p.R30C	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	970					proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				TGCCCAGGGCCGTGAGGGCAT	0.677													8	24					0	0	1	0	0	
RHBDL1	9028	broad.mit.edu	37	16	726267	726267	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:726267C>A	uc002cis.1	+	1	193	c.166C>A	c.(166-168)CCT>ACT	p.P56T	RHBDL1_uc002cir.1_Intron|RHBDL1_uc010uun.1_Intron	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	56					proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				TCCCAGCCAGCCTGGCCCAGC	0.677													6	4					0.00116845	0.0011919	1	1	0	
MSLNL	401827	broad.mit.edu	37	16	820111	820111	+	Silent	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:820111C>G	uc002cjz.1	-	15	2874	c.2874G>C	c.(2872-2874)GGG>GGC	p.G958G	MIR662_hsa-mir-662|MI0003670_5'Flank	NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	607	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						TGCTGGGGGGCCCCCTGGTGC	0.726													4	6					0	0	1	0	0	
LMF1	64788	broad.mit.edu	37	16	918962	918962	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:918962G>A	uc002ckj.2	-	10	1515	c.1511C>T	c.(1510-1512)GCG>GTG	p.A504V	LMF1_uc010brg.2_RNA|LMF1_uc010brh.2_Missense_Mutation_p.A287V|LMF1_uc010bri.2_Missense_Mutation_p.A267V|LMF1_uc002ckk.2_Missense_Mutation_p.A287V	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	504	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				GGGCCTGCCCGCGAAGGGGTT	0.667													25	102					0	0	1	0	0	
PTX4	390667	broad.mit.edu	37	16	1537746	1537746	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:1537746G>A	uc010uvf.1	-	2	352	c.352C>T	c.(352-354)CGG>TGG	p.R118W		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	123						extracellular region	metal ion binding				0						TCCAAGGCCCGCAGCCGCGTG	0.692													17	56					0	0	1	0	0	
MAPK8IP3	23162	broad.mit.edu	37	16	1810419	1810419	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:1810419A>C	uc002cmk.2	+	12	1460	c.1340A>C	c.(1339-1341)AAG>ACG	p.K447T	MAPK8IP3_uc002cml.2_Missense_Mutation_p.K441T|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.K448T	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	447	Potential.				vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CTGATTGCCAAGGTCGACCAG	0.557													24	86					0	0	1	0	0	
GRIN2A	2903	broad.mit.edu	37	16	10274018	10274018	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:10274018G>A	uc002czo.3	-	2	799	c.251C>T	c.(250-252)ACG>ATG	p.T84M	GRIN2A_uc010uym.1_Missense_Mutation_p.T84M|GRIN2A_uc002czr.3_Missense_Mutation_p.T84M|GRIN2A_uc010buk.2_Missense_Mutation_p.T84M	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	84	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCACACGTGCGTGATGAGGCT	0.647													38	112					0	0	1	0	0	
MYH11	4629	broad.mit.edu	37	16	15820852	15820852	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:15820852G>A	uc002ddy.2	-	28	3818	c.3711C>T	c.(3709-3711)GCC>GCT	p.A1237A	MYH11_uc002ddv.2_Silent_p.A1244A|MYH11_uc002ddw.2_Silent_p.A1237A|MYH11_uc002ddx.2_Silent_p.A1244A|MYH11_uc010bvg.2_Silent_p.A1069A|MYH11_uc010bvh.2_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1237	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GCAGCTCCCCGGCCAGGTCTG	0.602			T	CBFB	AML								92	281					0	0	1	0	0	
ACSM2B	348158	broad.mit.edu	37	16	20548601	20548601	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:20548601G>A	uc002dhj.3	-	15	1923	c.1713C>T	c.(1711-1713)TCC>TCT	p.S571S	ACSM2B_uc002dhk.3_Silent_p.S571S	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	571					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						GGGCTTTTCCGGACATCTTCC	0.463													55	216					0	0	1	0	0	
DCTN5	84516	broad.mit.edu	37	16	23676952	23676952	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:23676952C>T	uc002dly.1	+	5	411	c.354C>T	c.(352-354)CGC>CGT	p.R118R		NM_032486	NP_115875	Q9BTE1	DCTN5_HUMAN	dynactin 5	118						centrosome	transferase activity			upper_aerodigestive_tract(1)	1				GBM - Glioblastoma multiforme(48;0.0156)		TTCAGGGGCGCCGATGTGTGT	0.428													13	45					0	0	1	0	0	
TNRC6A	27327	broad.mit.edu	37	16	24802783	24802783	+	Silent	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:24802783A>T	uc002dmm.2	+	6	2934	c.2820A>T	c.(2818-2820)CCA>CCT	p.P940P	TNRC6A_uc010bxs.2_Silent_p.P687P|TNRC6A_uc010vcc.1_Silent_p.P687P|TNRC6A_uc002dmn.2_Silent_p.P687P|TNRC6A_uc002dmo.2_Silent_p.P687P	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	940	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		CGTCAAAGCCAGTCAGCTCTC	0.527													14	69					0	0	1	0	0	
IL21R	50615	broad.mit.edu	37	16	27445682	27445682	+	Missense_Mutation	SNP	G	A	A	rs149169230		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:27445682G>A	uc002doq.1	+	3	297	c.64G>A	c.(64-66)GAC>AAC	p.D22N	IL21R_uc002dor.1_Missense_Mutation_p.D22N|IL21R_uc002dos.1_Missense_Mutation_p.D22N	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	22	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GGGCTGCCCCGACCTCGTCTG	0.632			T	BCL6	NHL								14	33					0	0	1	0	0	
GTF3C1	2975	broad.mit.edu	37	16	27499592	27499592	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:27499592C>T	uc002dov.1	-	23	3696	c.3656G>A	c.(3655-3657)CGG>CAG	p.R1219Q	GTF3C1_uc002dou.2_Missense_Mutation_p.R1219Q	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1219	Arg/Lys-rich (basic).					transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CTTCTTCAGCCGCTTCCGCTT	0.522													43	160					0	0	1	0	0	
KIAA0556	23247	broad.mit.edu	37	16	27761440	27761440	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:27761440G>A	uc002dow.2	+	16	3183	c.3159G>A	c.(3157-3159)ACG>ACA	p.T1053T		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1053										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CCCCCTTCACGCGGGGCAGAT	0.547													13	52					0	0	1	0	0	
LAT	27040	broad.mit.edu	37	16	28997873	28997873	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:28997873C>T	uc002dsd.2	+	6	675	c.323C>T	c.(322-324)GCG>GTG	p.A108V	uc010vct.1_Intron|LAT_uc010vdj.1_Missense_Mutation_p.A144V|LAT_uc002dsb.2_Missense_Mutation_p.A108V|LAT_uc002dsc.2_Missense_Mutation_p.A107V|LAT_uc010vdk.1_Intron|LAT_uc010vdl.1_Missense_Mutation_p.A107V	NM_014387	NP_055202	O43561	LAT_HUMAN	linker for activation of T cells isoform a	108	Cytoplasmic (Potential).				calcium-mediated signaling|integrin-mediated signaling pathway|mast cell degranulation|platelet activation|Ras protein signal transduction|regulation of T cell activation|T cell receptor signaling pathway	immunological synapse|integral to membrane|intracellular|membrane raft	SH3/SH2 adaptor activity				0		Hepatocellular(780;0.244)				AACAGTGTGGCGAGCTACGAG	0.632													4	71					0	0	1	0	0	
GDPD3	79153	broad.mit.edu	37	16	30124114	30124114	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:30124114G>A	uc002dwp.2	-	3	262	c.183C>T	c.(181-183)AAC>AAT	p.N61N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|GDPD3_uc002dwq.2_5'UTR|LOC100271831_uc010vei.1_5'Flank	NM_024307	NP_077283	Q7L5L3	GDPD3_HUMAN	glycerophosphodiester phosphodiesterase domain	61	Extracellular (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0						GGGCCATGGAGCTGTGGGGGT	0.652											OREG0023731	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	52					0	0	1	0	0	
ZNF668	79759	broad.mit.edu	37	16	31075642	31075642	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:31075642C>T	uc010caf.2	-	2	496	c.139G>A	c.(139-141)GCA>ACA	p.A47T	ZNF668_uc002eao.2_Missense_Mutation_p.A47T|ZNF668_uc010cag.1_Missense_Mutation_p.A47T	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	47					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						GAGCAGTCTGCCGGCCCATGT	0.637													21	88					0	0	1	0	0	
ITGAX	3687	broad.mit.edu	37	16	31368597	31368597	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:31368597C>T	uc002ebu.1	+	5	409	c.342C>T	c.(340-342)CAC>CAT	p.H114H	ITGAX_uc010cao.1_3'UTR|ITGAX_uc002ebt.2_Silent_p.H114H	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	114	FG-GAP 2.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCGTGCACCACGAGTGCGGGA	0.692													3	12					0	0	1	0	0	
ITGAD	3681	broad.mit.edu	37	16	31422475	31422475	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:31422475G>A	uc002ebv.1	+	13	1484	c.1435G>A	c.(1435-1437)GCC>ACC	p.A479T	ITGAD_uc010cap.1_Missense_Mutation_p.A479T	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	479	Extracellular (Potential).|FG-GAP 5.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CCTCATTGGGGCCCCCCATTA	0.652													29	95					0	0	1	0	0	
TGFB1I1	7041	broad.mit.edu	37	16	31487822	31487822	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:31487822C>T	uc002ecd.1	+	9	935	c.909C>T	c.(907-909)GGC>GGT	p.G303G	TGFB1I1_uc002ece.1_Silent_p.G286G|TGFB1I1_uc010caq.1_Silent_p.G142G	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	303	LIM zinc-binding 2.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						CCGCCTTGGGCACTCACTGGC	0.637													6	20					0	0	1	0	0	
ITFG1	81533	broad.mit.edu	37	16	47493063	47493063	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:47493063C>T	uc002eet.2	-	2	294	c.232G>A	c.(232-234)GCA>ACA	p.A78T	ITFG1_uc010vgh.1_5'UTR|PHKB_uc010vgi.1_5'Flank|PHKB_uc002eeu.3_5'Flank|PHKB_uc002eev.3_5'Flank|ITFG1_uc010cbf.1_5'UTR	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	78						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				TTCTGGTCTGCCAAAAAGACG	0.264													12	71					0	0	1	0	0	
LPCAT2	54947	broad.mit.edu	37	16	55613052	55613052	+	Missense_Mutation	SNP	C	T	T	rs142090669	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:55613052C>T	uc002eie.3	+	13	1527	c.1346C>T	c.(1345-1347)ACG>ATG	p.T449M	LPCAT2_uc002eic.2_Missense_Mutation_p.T179M	NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	449	2 (Potential).|EF-hand 2.|Lumenal (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						GGCTACATAACGGAGGAAGAG	0.433													31	73					0	0	1	0	0	
MMP15	4324	broad.mit.edu	37	16	58073847	58073847	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:58073847T>C	uc002ena.2	+	4	1482	c.509T>C	c.(508-510)GTG>GCG	p.V170A		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	170	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						GCCTTCCGCGTGTGGGAGCAG	0.632													7	62					0	0	1	0	0	
EXOC3L	283849	broad.mit.edu	37	16	67221678	67221678	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:67221678C>T	uc002erx.1	-	5	731	c.490G>A	c.(490-492)GTG>ATG	p.V164M	EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Intron|EXOC3L_uc002ery.1_Missense_Mutation_p.V108M|EXOC3L_uc010vje.1_Missense_Mutation_p.V103M	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	164	Mediates interaction with EXOC2, EXOC4 and EXOC5 (By similarity).				exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		CGAAGGCTCACATATGCCTCC	0.602													29	64					0	0	1	0	0	
SMPD3	55512	broad.mit.edu	37	16	68405383	68405383	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:68405383G>A	uc002ewa.2	-	3	1124	c.702C>T	c.(700-702)GTC>GTT	p.V234V	SMPD3_uc010cfe.2_Silent_p.V234V|SMPD3_uc010vlh.1_Silent_p.V234V	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	234	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	TGCTGCTGTCGACAGGGTCCC	0.697													14	26					0	0	1	0	0	
AP1G1	164	broad.mit.edu	37	16	71779166	71779166	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:71779166T>A	uc010cgg.2	-	19	2194	c.1880A>T	c.(1879-1881)GAT>GTT	p.D627V	AP1G1_uc002fba.2_Missense_Mutation_p.D630V|AP1G1_uc002fbb.2_Missense_Mutation_p.D650V|AP1G1_uc002faz.2_Missense_Mutation_p.D44V	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	627					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				ATCCAATAAATCATTGGCCTA	0.358													18	31					0	0	1	0	0	
CDYL2	124359	broad.mit.edu	37	16	80718950	80718950	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:80718950C>T	uc002ffs.2	-	2	206	c.101G>A	c.(100-102)AGC>AAC	p.S34N		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	34	Chromo.					nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						GTCCTCGGTGCTCCCGTAGCC	0.483													44	136					0	0	1	0	0	
KLHL36	79786	broad.mit.edu	37	16	84690609	84690609	+	Missense_Mutation	SNP	G	A	A	rs140616787		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:84690609G>A	uc002fig.2	+	3	337	c.196G>A	c.(196-198)GTG>ATG	p.V66M	KLHL36_uc010chl.2_Missense_Mutation_p.V65M	NM_024731	NP_079007	Q8N4N3	KLH36_HUMAN	kelch-like 36	66	BTB.									skin(2)	2						CCTGCTGGCCGTGTGCAGCGA	0.632													20	65					0	0	1	0	0	
COX4NB	10328	broad.mit.edu	37	16	85814059	85814059	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:85814059C>T	uc002fjd.2	-	4	646	c.399G>A	c.(397-399)ACG>ACA	p.T133T	COX4NB_uc010vol.1_Intron	NM_006067	NP_006058	O43402	CX4NB_HUMAN	COX4 neighbor isoform 1	133						mitochondrion|nucleus					0						CGCAGTCCATCGTAAACTTGG	0.607													7	24					0	0	1	0	0	
ZCCHC14	23174	broad.mit.edu	37	16	87445497	87445497	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:87445497C>T	uc002fjz.1	-	12	2446	c.2419G>A	c.(2419-2421)GCC>ACC	p.A807T	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.A583T	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	807					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		AAGTAGTTGGCGTAGCTGACA	0.672													4	6					0	0	1	0	0	
CDH15	1013	broad.mit.edu	37	16	89257844	89257844	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:89257844G>A	uc002fmt.2	+	9	1416	c.1339G>A	c.(1339-1341)GGC>AGC	p.G447S		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	447	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CCTCAAGGGCGGCTGGTACAG	0.692													27	45					0	0	1	0	0	
ANKRD11	29123	broad.mit.edu	37	16	89341276	89341276	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:89341276G>A	uc002fmx.1	-	11	8120	c.7659C>T	c.(7657-7659)AGC>AGT	p.S2553S	ANKRD11_uc002fmy.1_Silent_p.S2553S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2553						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCGTGCAGGCGCTGAATGGCA	0.622													17	60					0	0	1	0	0	
RNMTL1	55178	broad.mit.edu	37	17	694859	694859	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:694859G>T	uc002frw.2	+	4	919	c.813G>T	c.(811-813)TGG>TGT	p.W271C		NM_018146	NP_060616	Q9HC36	RMTL1_HUMAN	RNA methyltransferase like 1	271					RNA processing		protein binding|RNA binding|RNA methyltransferase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0219)		ATCTGGAATGGGAAACCGTGC	0.527													28	74					1.13719e-10	1.21581e-10	1	1	0	
PELP1	27043	broad.mit.edu	37	17	4585839	4585839	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:4585839C>A	uc002fyi.3	-	5	826	c.600G>T	c.(598-600)AAG>AAT	p.K200N	PELP1_uc010vsf.1_Missense_Mutation_p.K53N	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	200					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TCATACAAGCCTTCATTCCTT	0.488													19	43					5.26018e-13	5.6693e-13	1	1	0	
PLD2	5338	broad.mit.edu	37	17	4722104	4722104	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:4722104G>A	uc002fzc.2	+	21	2260	c.2159G>A	c.(2158-2160)CGC>CAC	p.R720H	PLD2_uc002fzd.2_Missense_Mutation_p.R720H	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	720	Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	ATCCTGCATCGCCTTAAAGCA	0.637													39	111					0	0	1	0	0	
POLR2A	5430	broad.mit.edu	37	17	7399624	7399624	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:7399624C>T	uc002ghf.3	+	3	556	c.322C>T	c.(322-324)CGC>TGC	p.R108C	POLR2A_uc002ghe.2_Missense_Mutation_p.R108C	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	108					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				GAAAGTTTTGCGCTGTGTCTG	0.562													32	147					0	0	1	0	0	
CHD3	1107	broad.mit.edu	37	17	7814849	7814849	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:7814849C>T	uc002gje.2	+	40	6099	c.5949C>T	c.(5947-5949)GAC>GAT	p.D1983D	CHD3_uc002gjd.2_Silent_p.D2042D|CHD3_uc002gjf.2_Silent_p.D1949D|CHD3_uc002gjh.2_Silent_p.D560D|CHD3_uc002gjj.2_Silent_p.D146D	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1983					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				TGGTGTCAGACGGGCTGGATC	0.612													7	117					0	0	1	0	0	
ODF4	146852	broad.mit.edu	37	17	8243371	8243371	+	Missense_Mutation	SNP	T	C	C	rs140462392	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:8243371T>C	uc002gle.1	+	1	184	c.2T>C	c.(1-3)ATG>ACG	p.M1T		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	1					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						GTGCTCAAGATGGATGCAGAG	0.507													4	20					0	0	1	0	0	
MYH10	4628	broad.mit.edu	37	17	8451698	8451698	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:8451698T>C	uc002gll.2	-	10	1158	c.1062A>G	c.(1060-1062)CTA>CTG	p.L354L	MYH10_uc002glm.2_Silent_p.L364L|MYH10_uc010cnx.2_Silent_p.L363L	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	354	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTCCAAACTGTAGCACTGAAG	0.294													18	57					0	0	1	0	0	
MYH13	8735	broad.mit.edu	37	17	10248819	10248819	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:10248819C>T	uc002gmk.1	-	14	1468	c.1378G>A	c.(1378-1380)GGG>AGG	p.G460R	MYH13_uc010vvf.1_Missense_Mutation_p.G135R	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	460	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCCAAGACCCCGATGAAGTAC	0.507													30	133					0	0	1	0	0	
MYH2	4620	broad.mit.edu	37	17	10448726	10448726	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:10448726G>A	uc010coi.2	-	5	570	c.442C>T	c.(442-444)CGC>TGC	p.R148C	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R148C|MYH2_uc010coj.2_Missense_Mutation_p.R148C	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	148	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCCTCCTGGCGCTTTTTGCCT	0.537													63	180					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10535908	10535908	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:10535908C>T	uc002gmq.1	-	33	4918	c.4841G>A	c.(4840-4842)CGG>CAG	p.R1614Q		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1614	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CTTCTTGAGCCGGATGGCTTC	0.582													93	280					0	0	1	0	0	
HS3ST3A1	9955	broad.mit.edu	37	17	13400128	13400128	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:13400128T>G	uc002gob.1	-	2	1405	c.607A>C	c.(607-609)ATG>CTG	p.M203L		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	203	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTTCTGGGCATCAGGTCCCTG	0.502													9	62					0	0	1	0	0	
NCOR1	9611	broad.mit.edu	37	17	16012111	16012111	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:16012111T>A	uc002gpo.2	-	19	2411	c.2171A>T	c.(2170-2172)GAA>GTA	p.E724V	NCOR1_uc002gpn.2_Missense_Mutation_p.E724V|NCOR1_uc002gpp.1_Missense_Mutation_p.E615V|NCOR1_uc002gpr.2_Missense_Mutation_p.E615V	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	724					cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTCGCTGTCTTCTGGATTTTC	0.383													25	45					0	0	1	0	0	
MYO15A	51168	broad.mit.edu	37	17	18042911	18042911	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:18042911C>T	uc010vxh.1	+	18	5535	c.5197C>T	c.(5197-5199)CGG>TGG	p.R1733W		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1733	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCTGTTCGTACGGAGCCGGAC	0.642													12	36					0	0	1	0	0	
SMCR8	140775	broad.mit.edu	37	17	18220410	18220410	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:18220410A>C	uc002gsy.3	+	1	1817	c.1307A>C	c.(1306-1308)GAG>GCG	p.E436A		NM_144775	NP_658988	Q8TEV9	SMCR8_HUMAN	Smith-Magenis syndrome chromosome region,	436										central_nervous_system(1)	1						CTGGGAGATGAGGAGTACAAG	0.453													14	70					0	0	1	0	0	
CYTSB	92521	broad.mit.edu	37	17	20135577	20135577	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:20135577A>T	uc002gwq.2	+	7	2355	c.2210A>T	c.(2209-2211)GAC>GTC	p.D737V	CYTSB_uc010cqx.2_Missense_Mutation_p.D737V|CYTSB_uc002gwr.2_Missense_Mutation_p.D737V|CYTSB_uc002gws.2_Missense_Mutation_p.D737V|CYTSB_uc002gwv.2_Missense_Mutation_p.D656V|CYTSB_uc010vzf.1_Missense_Mutation_p.D77V|CYTSB_uc002gww.2_Missense_Mutation_p.D513V|CYTSB_uc002gwt.2_Missense_Mutation_p.D656V|CYTSB_uc002gwu.2_Missense_Mutation_p.D656V	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	737	Potential.					nucleus					0						GTGGCCAATGACATCAAGTGT	0.592													33	97					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	20744528	20744528	+	RNA	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:20744528C>T	uc010crb.1	+	1		c.188C>T								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		GGGGACCCTGCGGGCCTCCTC	0.721													11	24					0	0	1	0	0	
FOXN1	8456	broad.mit.edu	37	17	26851931	26851931	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:26851931G>T	uc010crm.2	+	3	732	c.534G>T	c.(532-534)GAG>GAT	p.E178D	FOXN1_uc002hbj.2_Missense_Mutation_p.E178D	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	178					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					TCTCAGCAGAGGCCTGGTGTA	0.642													13	31					1.05317e-09	1.11926e-09	1	1	0	
NUFIP2	57532	broad.mit.edu	37	17	27613259	27613259	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:27613259T>C	uc002hdy.3	-	2	1842	c.1753A>G	c.(1753-1755)ACT>GCT	p.T585A	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	585						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			CTCTCACTAGTAGTCCCAGAT	0.473													21	59					0	0	1	0	0	
ANKRD13B	124930	broad.mit.edu	37	17	27938981	27938981	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:27938981C>T	uc002hei.2	+	10	1170	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	ANKRD13B_uc002heh.2_Missense_Mutation_p.R221C|ANKRD13B_uc002hej.2_RNA|ANKRD13B_uc002hek.2_5'Flank	NM_152345	NP_689558	Q86YJ7	AN13B_HUMAN	ankyrin repeat domain 13B	353											0						GCTGGGCAACCGTGATATGGG	0.602													13	43					0	0	1	0	0	
SLFN11	91607	broad.mit.edu	37	17	33690288	33690288	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:33690288G>A	uc010ctp.2	-	4	981	c.539C>T	c.(538-540)TCG>TTG	p.S180L	SLFN11_uc010ctq.2_Missense_Mutation_p.S180L|SLFN11_uc002hjh.3_Missense_Mutation_p.S180L|SLFN11_uc002hjg.3_Missense_Mutation_p.S180L|SLFN11_uc010ctr.2_Missense_Mutation_p.S180L	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	180						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGCAGGATCCGAGTTAGGGAG	0.428													42	144					0	0	1	0	0	
KRT12	3859	broad.mit.edu	37	17	39020063	39020063	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:39020063G>A	uc002hvk.2	-	4	885	c.861C>T	c.(859-861)GAC>GAT	p.D287D		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	287	Rod.|Linker 12.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CGGGGGCAGCGTCCATTTCTA	0.557													11	38					0	0	1	0	0	
KRT23	25984	broad.mit.edu	37	17	39092801	39092801	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:39092801C>T	uc002hvm.1	-	2	644	c.55G>A	c.(55-57)GGA>AGA	p.G19R	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Missense_Mutation_p.G19R|KRT23_uc002hvn.1_Missense_Mutation_p.G19R	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	19	Head.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				CAGCCACCTCCGGCGCCATGG	0.692													17	57					0	0	1	0	0	
MLX	6945	broad.mit.edu	37	17	40721266	40721266	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:40721266G>A	uc002iag.2	+	5	548	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q	MLX_uc002iaf.2_Silent_p.Q107Q|MLX_uc002iah.2_Silent_p.Q77Q	NM_170607	NP_733752	Q9UH92	MLX_HUMAN	transcription factor-like protein 4 isoform	161					energy reserve metabolic process|negative regulation of transcription, DNA-dependent|positive regulation of cellular metabolic process	cytoplasm|nucleus	DNA binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		all_cancers(22;4.26e-05)|Breast(137;0.000153)|all_epithelial(22;0.00148)		BRCA - Breast invasive adenocarcinoma(366;0.129)		CTTGCCAGCAGCAGGACTTCT	0.512													30	116					0	0	1	0	0	
CNTNAP1	8506	broad.mit.edu	37	17	40839042	40839042	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:40839042G>A	uc002iay.2	+	7	1238	c.1022G>A	c.(1021-1023)CGC>CAC	p.R341H	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	341	Laminin G-like 1.|Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GCCGTGCGGCGCCATTCCCGG	0.597													17	54					0	0	1	0	0	
KIF18B	146909	broad.mit.edu	37	17	43008979	43008979	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:43008979C>T	uc010wji.1	-	11	1645	c.1544G>A	c.(1543-1545)CGT>CAT	p.R515H	KIF18B_uc002iht.2_Missense_Mutation_p.R515H|KIF18B_uc010wjh.1_Missense_Mutation_p.R503H	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				CTGCTTAGAACGGTCCCCATC	0.567													8	95					0	0	1	0	0	
RPRML	388394	broad.mit.edu	37	17	45056238	45056238	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:45056238C>T	uc002ilb.2	-	1	377	c.136G>A	c.(136-138)GCC>ACC	p.A46T	GOSR2_uc010wkh.1_Intron	NM_203400	NP_981945	Q8N4K4	RPRML_HUMAN	reprimo-like	46						integral to membrane					0						TCGCTGGCGGCCAGCGGTGCG	0.667													5	8					0	0	1	0	0	
SNF8	11267	broad.mit.edu	37	17	47014454	47014454	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:47014454C>T	uc002ioj.2	-	4	335	c.277G>A	c.(277-279)GTG>ATG	p.V93M	SNF8_uc002iok.2_Missense_Mutation_p.V93M	NM_007241	NP_009172	Q96H20	SNF8_HUMAN	EAP30 subunit of ELL complex	93					cellular membrane organization|endosome transport|protein transport|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytosol|late endosome membrane|transcription factor complex	transcription factor binding				0						AAGTCCCCCACGCCCAGCATC	0.458													48	132					0	0	1	0	0	
SPAG9	9043	broad.mit.edu	37	17	49098699	49098699	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:49098699C>T	uc002itc.2	-	7	1020	c.811G>A	c.(811-813)GGA>AGA	p.G271R	SPAG9_uc002itb.2_Missense_Mutation_p.G257R|SPAG9_uc002itd.2_Missense_Mutation_p.G257R|SPAG9_uc002itf.2_Missense_Mutation_p.G92R|SPAG9_uc002ita.2_Missense_Mutation_p.G114R|SPAG9_uc002ite.2_Missense_Mutation_p.G101R	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	271					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			GCTTTAGATCCGCCTTGGCTA	0.348													34	71					0	0	1	0	0	
COIL	8161	broad.mit.edu	37	17	55019433	55019433	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:55019433G>A	uc002iuu.2	-	6	1641	c.1610C>T	c.(1609-1611)GCC>GTC	p.A537V		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	537						Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					CACTACCTCGGCTCCATTTTC	0.438													28	94					0	0	1	0	0	
OR4D1	26689	broad.mit.edu	37	17	56233062	56233062	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:56233062A>G	uc010wno.1	+	1	548	c.548A>G	c.(547-549)CAA>CGA	p.Q183R	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GATGTTCCCCAAGTACTGAGA	0.512													33	95					0	0	1	0	0	
TEX14	56155	broad.mit.edu	37	17	56663303	56663303	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:56663303C>G	uc010dcz.1	-	18	3065	c.2947G>C	c.(2947-2949)GAA>CAA	p.E983Q	TEX14_uc002iwr.1_Missense_Mutation_p.E977Q|TEX14_uc002iws.1_Missense_Mutation_p.E977Q|TEX14_uc010dda.1_Missense_Mutation_p.E757Q	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	983						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCCGTGTTTTCTGGGCTCCTA	0.517													39	105					0	0	1	0	0	
BRIP1	83990	broad.mit.edu	37	17	59763509	59763509	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:59763509G>A	uc002izk.1	-	19	2734	c.2593C>T	c.(2593-2595)CGG>TGG	p.R865W	BRIP1_uc002izl.1_Missense_Mutation_p.R246W	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	865					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						ATCTGCTGCCGTACCCATTTA	0.348			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				27	71					0	0	1	0	0	
ACE	1636	broad.mit.edu	37	17	61574527	61574527	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:61574527G>A	uc002jau.1	+	25	3743	c.3721G>A	c.(3721-3723)GGC>AGC	p.G1241S	ACE_uc002jav.1_Missense_Mutation_p.G667S|ACE_uc010ddv.1_Missense_Mutation_p.G468S|ACE_uc010wpj.1_Missense_Mutation_p.G626S|ACE_uc002jaw.1_Intron|ACE_uc010wpk.1_Missense_Mutation_p.G446S	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1241	Extracellular (Potential).				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CCCAGACAGCGGCCGCGTCAG	0.542													4	18					0	0	1	0	0	
LRRC37A3	374819	broad.mit.edu	37	17	62892219	62892219	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:62892219G>T	uc002jey.2	-	3	1688	c.1157C>A	c.(1156-1158)CCT>CAT	p.P386H	LRRC37A3_uc010wqg.1_Intron|LRRC37A3_uc010wqf.1_Intron	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	386	Extracellular (Potential).					integral to membrane					0						ATGTTCTGGAGGCTGACCTGG	0.527													36	258					1.63429e-32	1.81267e-32	1	1	0	
ABCA8	10351	broad.mit.edu	37	17	66925743	66925743	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:66925743T>C	uc002jhp.2	-	7	1077	c.898A>G	c.(898-900)ATG>GTG	p.M300V	ABCA8_uc002jhq.2_Missense_Mutation_p.M300V|ABCA8_uc010wqq.1_Missense_Mutation_p.M300V|ABCA8_uc010wqr.1_Missense_Mutation_p.M239V|ABCA8_uc002jhr.2_Missense_Mutation_p.M300V	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	300	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AAGACTACCATGAAGCCAGAC	0.393													9	56					0	0	1	0	0	
ABCA9	10350	broad.mit.edu	37	17	67041434	67041434	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:67041434T>A	uc002jhu.2	-	4	491	c.348A>T	c.(346-348)GAA>GAT	p.E116D	ABCA9_uc010dez.2_Missense_Mutation_p.E116D|ABCA9_uc002jhv.2_Missense_Mutation_p.E116D	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	116					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TCAAATCCAATTCATCCATGC	0.393													16	92					0	0	1	0	0	
SLC25A19	60386	broad.mit.edu	37	17	73274374	73274374	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:73274374T>C	uc002jns.3	-	4	1412	c.502A>G	c.(502-504)AGC>GGC	p.S168G	SLC25A19_uc010dge.2_Missense_Mutation_p.S111G|SLC25A19_uc002jnv.3_Missense_Mutation_p.S168G|SLC25A19_uc002jnu.3_Missense_Mutation_p.S168G|SLC25A19_uc002jnw.3_Missense_Mutation_p.S168G|SLC25A19_uc002jnt.3_Missense_Mutation_p.S168G	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	168	Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			GGGCCTTCGCTCCTATACATG	0.552													52	113					0	0	1	0	0	
EVPL	2125	broad.mit.edu	37	17	74019498	74019498	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:74019498T>C	uc002jqi.2	-	4	583	c.355A>G	c.(355-357)ATC>GTC	p.I119V	EVPL_uc010wss.1_Missense_Mutation_p.I119V|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	119	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGCTGCTTGATGCTGTCAAGA	0.652													18	54					0	0	1	0	0	
CARD14	79092	broad.mit.edu	37	17	78156499	78156499	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:78156499G>A	uc002jxw.1	+	3	454	c.259G>A	c.(259-261)GCC>ACC	p.A87T	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Missense_Mutation_p.A87T|CARD14_uc010wud.1_5'Flank	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	87	CARD.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CGGGGCCATCGCCTTCCTGGA	0.587													14	33					0	0	1	0	0	
FASN	2194	broad.mit.edu	37	17	80049217	80049217	+	Missense_Mutation	SNP	G	A	A	rs143812680		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:80049217G>A	uc002kdu.2	-	9	1490	c.1373C>T	c.(1372-1374)GCG>GTG	p.A458V	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	458	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGGGACAGCCGCGATGTCGTT	0.716													5	13					0	0	1	0	0	
FOXK2	3607	broad.mit.edu	37	17	80559219	80559219	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr17:80559219C>T	uc002kfn.2	+	9	1998	c.1827C>T	c.(1825-1827)TCC>TCT	p.S609S	FOXK2_uc010diu.2_Missense_Mutation_p.P317L|FOXK2_uc002kfo.2_RNA|FOXK2_uc002kfp.2_RNA	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	609					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			CACACGCATCCGCATCGGCCT	0.612													14	75					0	0	1	0	0	
ENOSF1	55556	broad.mit.edu	37	18	677824	677824	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:677824G>A	uc002kku.3	-	13	1042	c.967C>T	c.(967-969)CAG>TAG	p.Q323*	ENOSF1_uc002kkt.3_Nonsense_Mutation_p.Q241*|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Nonsense_Mutation_p.Q330*|ENOSF1_uc002kkv.3_Nonsense_Mutation_p.Q310*|ENOSF1_uc002kkw.3_Nonsense_Mutation_p.Q142*|ENOSF1_uc002kkx.3_Nonsense_Mutation_p.Q247*	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	323					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						TGGAGGAACTGCAGGGCCTTC	0.468													29	102					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	7049225	7049225	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:7049225C>T	uc002knm.2	-	5	714	c.620G>A	c.(619-621)AGC>AAC	p.S207N	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	207	Laminin N-terminal.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATCGTCAGCGCTTGGTCTGCC	0.363													29	118					0	0	1	0	0	
PTPRM	5797	broad.mit.edu	37	18	8370957	8370957	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:8370957A>G	uc002knn.3	+	22	3588	c.3085A>G	c.(3085-3087)ACA>GCA	p.T1029A	PTPRM_uc010dkv.2_Missense_Mutation_p.T1042A|PTPRM_uc010wzl.1_Missense_Mutation_p.T816A	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1029	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				CCTAATAGAAACAGAACTACT	0.333													17	52					0	0	1	0	0	
TUBB6	84617	broad.mit.edu	37	18	12325604	12325604	+	Silent	SNP	G	A	A	rs140883153		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:12325604G>A	uc002kqw.2	+	4	861	c.816G>A	c.(814-816)CCG>CCA	p.P272P	TUBB6_uc002kqv.2_Silent_p.P200P|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Silent_p.P235P|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	272					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		GCTTCGCGCCGCTCACCAGCC	0.682													16	50					0	0	1	0	0	
TUBB6	84617	broad.mit.edu	37	18	12325851	12325851	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:12325851G>A	uc002kqw.2	+	4	1108	c.1063G>A	c.(1063-1065)GAC>AAC	p.D355N	TUBB6_uc002kqv.2_Missense_Mutation_p.D283N|TUBB6_uc002kqx.2_Missense_Mutation_p.D318N|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	355					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		GGCCGTGTGCGACATCCCGCC	0.592													49	182					0	0	1	0	0	
ZNF519	162655	broad.mit.edu	37	18	14105730	14105730	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:14105730C>T	uc002kst.1	-	3	962	c.809G>A	c.(808-810)CGT>CAT	p.R270H	ZNF519_uc002ksq.1_Intron|ZNF519_uc002ksr.1_Intron|ZNF519_uc010dlm.1_Intron	NM_145287	NP_660330	Q8TB69	ZN519_HUMAN	zinc finger protein 519	270					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCTTTGCCACGTTCTTTATA	0.318													11	42					0	0	1	0	0	
NPC1	4864	broad.mit.edu	37	18	21114441	21114441	+	Missense_Mutation	SNP	G	A	A	rs113371321		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:21114441G>A	uc002kum.3	-	23	3834	c.3560C>T	c.(3559-3561)GCG>GTG	p.A1187V	NPC1_uc010dlu.1_5'Flank|NPC1_uc010xaz.1_Missense_Mutation_p.A920V	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	1187					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TGCCTCTTCCGCGCGCTCCAC	0.587													11	36					0	0	1	0	0	
HRH4	59340	broad.mit.edu	37	18	22057071	22057071	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:22057071G>A	uc002kvi.2	+	3	818	c.718G>A	c.(718-720)GCA>ACA	p.A240T	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Missense_Mutation_p.A152T	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	240	Cytoplasmic (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	ATCTCTTTCTGCATCGACAGA	0.443													28	98					0	0	1	0	0	
CHST9	83539	broad.mit.edu	37	18	24722666	24722666	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:24722666T>G	uc002kwd.2	-	1	306	c.108A>C	c.(106-108)GAA>GAC	p.E36D	C18orf16_uc010xbm.1_Intron|CHST9_uc002kwe.2_Missense_Mutation_p.E36D	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	36	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					TATGTTGTTCTTCAATCCAGA	0.328													16	39					0	0	1	0	0	
C18orf34	374864	broad.mit.edu	37	18	30926291	30926291	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:30926291C>T	uc002kxn.2	-	8	684	c.542G>A	c.(541-543)CGG>CAG	p.R181Q	C18orf34_uc010xbr.1_Missense_Mutation_p.R181Q|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.R181Q|C18orf34_uc002kxp.2_Missense_Mutation_p.R181Q	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	181	Potential.									ovary(1)	1						AGCGTCTGCCCGGTCAGTTTC	0.378													19	58					0	0	1	0	0	
PIGN	23556	broad.mit.edu	37	18	59806256	59806256	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:59806256C>A	uc002lii.3	-	13	1524	c.1076G>T	c.(1075-1077)AGC>ATC	p.S359I	PIGN_uc002lij.3_Missense_Mutation_p.S359I	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	359	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				TGTAAACATGCTCTCTGCTTT	0.343													4	14					0.00024832	0.000254767	1	1	0	
RNF126	55658	broad.mit.edu	37	19	651816	651816	+	Missense_Mutation	SNP	C	T	T	rs139851549		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:651816C>T	uc010drs.2	-	4	344	c.238G>A	c.(238-240)GGA>AGA	p.G80R	RNF126_uc002lpi.2_5'UTR	NM_194460	NP_919442	Q9BV68	RN126_HUMAN	ring finger protein 126	80							protein binding|zinc ion binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAAACTGTCCGTAGCCCTGC	0.687													19	70					0	0	1	0	0	
PTBP1	5725	broad.mit.edu	37	19	805125	805125	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:805125G>A	uc002lpr.2	+	8	936	c.830G>A	c.(829-831)CGC>CAC	p.R277H	PTBP1_uc002lpp.2_Missense_Mutation_p.R277H|PTBP1_uc002lpq.2_Missense_Mutation_p.R277H|PTBP1_uc002lps.2_Intron|PTBP1_uc002lpt.2_RNA|PTBP1_uc002lpu.1_Missense_Mutation_p.R247H	NM_031991	NP_114368	P26599	PTBP1_HUMAN	polypyrimidine tract-binding protein 1 isoform	277					negative regulation of muscle cell differentiation|nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	mRNA binding|nucleotide binding|poly-pyrimidine tract binding|protein binding			kidney(1)|skin(1)	2		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACTACACACGCCCAGACCTG	0.617													47	160					0	0	1	0	0	
ELANE	1991	broad.mit.edu	37	19	855752	855752	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:855752C>T	uc002lqb.2	+	4	593	c.555C>T	c.(553-555)AAC>AAT	p.N185N		NM_001972	NP_001963	P08246	ELNE_HUMAN	neutrophil elastase preproprotein	185	Peptidase S1.				cellular calcium ion homeostasis|negative regulation of chemokine biosynthetic process|negative regulation of chemotaxis|negative regulation of inflammatory response|negative regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of MAP kinase activity|positive regulation of smooth muscle cell proliferation|protein catabolic process|proteolysis|response to UV	cell surface|extracellular region|stored secretory granule	bacterial cell surface binding|cytokine binding|heparin binding			pancreas(1)	1					Alpha-1-proteinase inhibitor(DB00058)|Filgrastim(DB00099)|Pegfilgrastim(DB00019)	GTCGCAGCAACGTCTGCACTC	0.687									Kostmann_syndrome				23	83					0	0	1	0	0	
ABCA7	10347	broad.mit.edu	37	19	1063545	1063545	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:1063545C>T	uc002lqw.3	+	43	5946	c.5715C>T	c.(5713-5715)ACC>ACT	p.T1905T	ABCA7_uc002lqy.2_Silent_p.T358T|ABCA7_uc010dsc.2_RNA|HMHA1_uc010xgd.1_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1905	ABC transporter 2.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCACAGACCGCTGGCTCGG	0.662													8	46					0	0	1	0	0	
APC2	10297	broad.mit.edu	37	19	1460271	1460271	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:1460271C>T	uc002lsr.1	+	11	1603	c.1395C>T	c.(1393-1395)TAC>TAT	p.Y465Y	APC2_uc002lss.1_Silent_p.Y47Y|APC2_uc002lst.1_Silent_p.Y465Y|APC2_uc002lsu.1_Silent_p.Y464Y|uc002lsv.2_5'Flank	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	465					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCGCCGCTACGCGGGCATGA	0.642													36	70					0	0	1	0	0	
PCSK4	54760	broad.mit.edu	37	19	1483747	1483747	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:1483747G>A	uc002ltb.1	-	11	1355	c.1293C>T	c.(1291-1293)TAC>TAT	p.Y431Y	PCSK4_uc002lsz.2_Translation_Start_Site|PCSK4_uc002lta.2_Silent_p.Y243Y	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	431					proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGCAGCCCGTATCCGTAGT	0.557													9	26					0	0	1	0	0	
THOP1	7064	broad.mit.edu	37	19	2807737	2807737	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:2807737G>A	uc002lwj.2	+	8	1339	c.1184G>A	c.(1183-1185)CGG>CAG	p.R395Q	THOP1_uc010xgz.1_Missense_Mutation_p.R274Q|THOP1_uc002lwk.2_5'Flank	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	395					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGACGTGCGGCTCTACACC	0.716													11	27					0	0	1	0	0	
NCLN	56926	broad.mit.edu	37	19	3207443	3207443	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:3207443C>T	uc002lxi.2	+	14	1762	c.1608C>T	c.(1606-1608)CTC>CTT	p.L536L	NCLN_uc002lxh.1_RNA|NCLN_uc002lxj.1_RNA|NCLN_uc002lxk.2_Silent_p.L180L	NM_020170	NP_064555	Q969V3	NCLN_HUMAN	nicalin precursor	536	Helical; (Potential).				proteolysis|regulation of signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	peptidase activity|protein binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.83e-113)|Epithelial(107;1.65e-111)|all cancers(105;1.53e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00139)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCCTACCTCGGCATGGCCT	0.672													40	148					0	0	1	0	0	
GIPC3	126326	broad.mit.edu	37	19	3590055	3590055	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:3590055C>T	uc002lyd.3	+	6	833	c.806C>T	c.(805-807)ACG>ATG	p.T269M		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	269										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGGTGGAGACGTCCAAGAAG	0.652													8	14					0	0	1	0	0	
DAPK3	1613	broad.mit.edu	37	19	3964788	3964788	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:3964788G>A	uc002lzc.1	-	2	357	c.264C>T	c.(262-264)GAC>GAT	p.D88D	DAPK3_uc002lzb.1_5'Flank|DAPK3_uc002lzd.1_Silent_p.D88D	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	88	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAGGACCACGTCCGTCTTGT	0.622													22	74					0	0	1	0	0	
UBXN6	80700	broad.mit.edu	37	19	4446914	4446914	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:4446914G>A	uc002man.1	-	7	715	c.619C>T	c.(619-621)CGC>TGC	p.R207C	UBXN6_uc010dty.1_Missense_Mutation_p.R111C|UBXN6_uc002mam.1_Missense_Mutation_p.R154C	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	207	PUB.					microtubule organizing center|nucleus	protein binding				0						CAGTTAATGCGCTCCTGGGGG	0.642													4	27					0	0	1	0	0	
PTPRS	5802	broad.mit.edu	37	19	5220166	5220166	+	Splice_Site	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:5220166C>A	uc002mbv.2	-	22	3784	c.3550_splice	c.e22-1	p.L1184_splice	PTPRS_uc002mbu.1_Splice_Site_p.L753_splice|PTPRS_uc010xin.1_Splice_Site_p.L753_splice|PTPRS_uc002mbw.2_Splice_Site_p.L1162_splice|PTPRS_uc002mbx.2_Splice_Site_p.L757_splice|PTPRS_uc002mby.2_Splice_Site_p.L753_splice	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,						cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		CCTGGATGAGCTGCGGGAACA	0.637													9	19					0.00448238	0.0045593	1	1	0	
TNFSF14	8740	broad.mit.edu	37	19	6665011	6665011	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:6665011C>T	uc002mfk.1	-	5	1031	c.649G>A	c.(649-651)GTC>ATC	p.V217I	TNFSF14_uc002mfj.1_Missense_Mutation_p.V181I	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	217	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						AGCACACGGACGACCACCTTC	0.622													27	86					0	0	1	0	0	
GPR108	56927	broad.mit.edu	37	19	6732382	6732382	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:6732382G>A	uc002mfp.2	-	12	1063	c.1017C>T	c.(1015-1017)GGC>GGT	p.G339G	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_Silent_p.G10G|GPR108_uc002mfo.3_Silent_p.G97G|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	339	Helical; Name=3; (Potential).					integral to membrane					0						AGAGGAGGGCGCCCTTCAGCC	0.627													30	72					0	0	1	0	0	
TIMM44	10469	broad.mit.edu	37	19	7999073	7999073	+	Silent	SNP	G	T	T	rs149061456	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:7999073G>T	uc002miz.2	-	5	446	c.444C>A	c.(442-444)GGC>GGA	p.G148G	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	148					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						CTTCCTCCACGCCCTCCTTGA	0.632													47	87					6.32628e-17	6.91613e-17	1	1	0	
ELAVL1	1994	broad.mit.edu	37	19	8056648	8056648	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:8056648C>T	uc002mjb.2	-	2	219	c.52G>A	c.(52-54)GGG>AGG	p.G18R		NM_001419	NP_001410	Q15717	ELAV1_HUMAN	ELAV-like 1	18					3'-UTR-mediated mRNA stabilization|multicellular organismal development	cytoplasm|nucleoplasm	identical protein binding|mRNA binding|nucleotide binding				0						TTCGTTCTCCCGATGTCACCC	0.423													27	81					0	0	1	0	0	
OR2Z1	284383	broad.mit.edu	37	19	8841803	8841803	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:8841803G>A	uc010xkg.1	+	1	413	c.413G>A	c.(412-414)CGC>CAC	p.R138H		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						CTTATGAGACGCCAGGTATGT	0.557													5	111					0	0	1	0	0	
OLFM2	93145	broad.mit.edu	37	19	9965006	9965006	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:9965006G>A	uc002mmp.2	-	6	1249	c.1221C>T	c.(1219-1221)GAC>GAT	p.D407D	OLFM2_uc002mmo.2_Silent_p.D329D	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	407	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						GGAAGGGCACGTCCGTGTACT	0.562													40	123					0	0	1	0	0	
OLFM2	93145	broad.mit.edu	37	19	9965191	9965191	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:9965191C>T	uc002mmp.2	-	6	1064	c.1036G>A	c.(1036-1038)GTG>ATG	p.V346M	OLFM2_uc002mmo.2_Missense_Mutation_p.V268M	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	346	Olfactomedin-like.					extracellular region				large_intestine(1)|skin(1)	2						CGGCTGACCACGATGTTGCCC	0.652													37	82					0	0	1	0	0	
COL5A3	50509	broad.mit.edu	37	19	10087919	10087919	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:10087919C>T	uc002mmq.1	-	44	3360	c.3274G>A	c.(3274-3276)GAT>AAT	p.D1092N		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1092	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCTCCTTTATCGCCTTTACTC	0.607													21	50					0	0	1	0	0	
DNM2	1785	broad.mit.edu	37	19	10940910	10940910	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:10940910C>T	uc002mps.1	+	20	2563	c.2399C>T	c.(2398-2400)GCA>GTA	p.A800V	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Missense_Mutation_p.A800V|DNM2_uc002mpv.1_Missense_Mutation_p.A796V|DNM2_uc002mpu.1_Missense_Mutation_p.A796V|DNM2_uc010dxl.1_Missense_Mutation_p.A800V|DNM2_uc002mpw.2_Missense_Mutation_p.A529V|DNM2_uc002mpx.1_Missense_Mutation_p.A156V	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	800	Pro-rich.				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			CCCGTGGGGGCAGCAGCCTCC	0.697													27	115					0	0	1	0	0	
LYL1	4066	broad.mit.edu	37	19	13211729	13211729	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:13211729G>T	uc002mwi.2	-	2	618	c.257C>A	c.(256-258)CCG>CAG	p.P86Q		NM_005583	NP_005574	P12980	LYL1_HUMAN	lymphoblastic leukemia derived sequence 1	86					B cell differentiation|blood vessel maturation|definitive hemopoiesis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)			TTGCAGCAGCGGGGGCCGCAG	0.682			T	TRB@	T-ALL								3	4					0.115264	0.115916	1	1	0	
DDX39	10212	broad.mit.edu	37	19	14521142	14521142	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:14521142C>T	uc010xnp.1	-	6	663	c.618G>A	c.(616-618)ATG>ATA	p.M206I	DDX39_uc002myo.2_Missense_Mutation_p.M206I|DDX39_uc010dzl.2_RNA|DDX39_uc010dzm.1_Missense_Mutation_p.M206I	NM_005804	NP_005795	O00148	DX39A_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	206	Helicase ATP-binding.				mRNA export from nucleus|nuclear mRNA splicing, via spliceosome	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding				0						CATCCCGCCGCATGTCTAGGT	0.632													13	45					0	0	1	0	0	
PKN1	5585	broad.mit.edu	37	19	14561788	14561788	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:14561788C>T	uc002myp.2	+	6	1005	c.837C>T	c.(835-837)CCC>CCT	p.P279P	PKN1_uc002myq.2_Silent_p.P285P	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	279	REM 3.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						GGGAGCTGCCCGCCGACCACC	0.682													4	12					0	0	1	0	0	
TECR	9524	broad.mit.edu	37	19	14675085	14675085	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:14675085C>T	uc002mza.2	+	7	602	c.475C>T	c.(475-477)CGC>TGC	p.R159C	TECR_uc002mzb.2_Missense_Mutation_p.R174C|TECR_uc010xns.1_Missense_Mutation_p.R4C|TECR_uc002mzc.2_Missense_Mutation_p.R4C|TECR_uc002mzd.2_Missense_Mutation_p.R159C|TECR_uc002mze.2_5'Flank|TECR_uc002mzf.1_5'Flank	NM_138501	NP_612510	Q9NZ01	TECR_HUMAN	glycoprotein, synaptic 2	159					fatty acid elongation|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	trans-2-enoyl-CoA reductase (NADPH) activity|very long-chain-acyl-CoA dehydrogenase activity				0						TATGCCTTTGCGCAACATCTT	0.343													13	38					0	0	1	0	0	
EMR2	30817	broad.mit.edu	37	19	14876168	14876168	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:14876168T>G	uc002mzp.1	-	10	1326	c.870A>C	c.(868-870)AGA>AGC	p.R290S	EMR2_uc010dzs.1_5'UTR|EMR2_uc010xnw.1_Missense_Mutation_p.R290S|EMR2_uc002mzo.1_Missense_Mutation_p.R290S|EMR2_uc002mzq.1_Missense_Mutation_p.R241S|EMR2_uc002mzr.1_Missense_Mutation_p.R241S|EMR2_uc002mzs.1_Missense_Mutation_p.R148S|EMR2_uc002mzt.1_Missense_Mutation_p.R197S|EMR2_uc002mzu.1_Missense_Mutation_p.R197S|EMR2_uc010xnx.1_RNA|EMR2_uc010xny.1_RNA	NM_013447	NP_038475	Q9UHX3	EMR2_HUMAN	egf-like module containing, mucin-like, hormone	290	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			lung(2)|ovary(1)|skin(1)	4						GCTTGTAGTCTCTGCCCAGGT	0.597													33	110					0	0	1	0	0	
CALR3	125972	broad.mit.edu	37	19	16591434	16591434	+	Silent	SNP	G	A	A	rs143913852		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:16591434G>A	uc002ned.2	-	8	1065	c.1002C>T	c.(1000-1002)GGC>GGT	p.G334G	MED26_uc002nee.2_RNA	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	334	C-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						CCTTGGTTTCGCCCCAGGTGG	0.318													17	35					0	0	1	0	0	
MYO9B	4650	broad.mit.edu	37	19	17316104	17316104	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:17316104C>T	uc010eak.2	+	31	5175	c.5023C>T	c.(5023-5025)CAC>TAC	p.H1675Y	MYO9B_uc002nfi.2_Missense_Mutation_p.H1675Y|MYO9B_uc002nfj.1_Missense_Mutation_p.H1675Y|MYO9B_uc002nfl.1_Intron|MYO9B_uc002nfm.1_5'Flank	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1675	Tail.|Phorbol-ester/DAG-type.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GAAGTGCGTGCACAAGATTCA	0.587													14	54					0	0	1	0	0	
GLT25D1	79709	broad.mit.edu	37	19	17679366	17679366	+	Missense_Mutation	SNP	C	T	T	rs142308296		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:17679366C>T	uc002nhc.1	+	5	685	c.673C>T	c.(673-675)CGC>TGC	p.R225C	GLT25D1_uc010eax.1_5'UTR	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	225					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						CAAGCGAGACCGCCGGGGCTG	0.617													19	63					0	0	1	0	0	
KIAA0892	23383	broad.mit.edu	37	19	19453672	19453672	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:19453672A>G	uc002nmk.3	+	9	1009	c.970A>G	c.(970-972)AAG>GAG	p.K324E	KIAA0892_uc002nml.3_5'Flank|KIAA0892_uc010ecd.2_5'Flank	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	324					cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GGAGAAGCTCAAGAGTAAGTC	0.622											OREG0025380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	136					0	0	1	0	0	
CILP2	148113	broad.mit.edu	37	19	19655136	19655136	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:19655136C>T	uc002nmv.3	+	8	1867	c.1782C>T	c.(1780-1782)GCC>GCT	p.A594A	CILP2_uc002nmw.3_Silent_p.A600A	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	594						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TCCGCAGAGCCGACGGCAAAC	0.672													34	98					0	0	1	0	0	
ZNF681	148213	broad.mit.edu	37	19	23926579	23926579	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:23926579T>G	uc002nrk.3	-	4	1915	c.1773A>C	c.(1771-1773)CAA>CAC	p.Q591H	ZNF681_uc002nrl.3_Missense_Mutation_p.Q522H|ZNF681_uc002nrj.3_Missense_Mutation_p.Q522H	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	591	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTTTTCACATTGGTAGGGTT	0.383													7	34					0	0	1	0	0	
ATP4A	495	broad.mit.edu	37	19	36045880	36045880	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:36045880C>T	uc002oal.1	-	16	2454	c.2425G>A	c.(2425-2427)GTG>ATG	p.V809M	ATP4A_uc010eee.1_Translation_Start_Site	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	809	Lumenal (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GGCAGGGGCACGCTGACGGTG	0.542													17	39					0	0	1	0	0	
LRFN3	79414	broad.mit.edu	37	19	36431206	36431206	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:36431206C>T	uc002oco.2	+	2	1331	c.879C>T	c.(877-879)TGC>TGT	p.C293C		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	293	LRRCT.|Extracellular (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			AGTTTGTCTGCGAGCCGCCCG	0.741													5	17					0	0	1	0	0	
ZNF568	374900	broad.mit.edu	37	19	37440779	37440779	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:37440779C>T	uc002ofc.2	+	7	1239	c.724C>T	c.(724-726)CGA>TGA	p.R242*	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Nonsense_Mutation_p.R166*|ZNF568_uc010efe.2_Nonsense_Mutation_p.R166*|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	242	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TAGACATGAGCGAATTCATGC	0.378													17	70					0	0	1	0	0	
SIPA1L3	23094	broad.mit.edu	37	19	38655373	38655373	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:38655373C>T	uc002ohk.2	+	15	4544	c.4035C>T	c.(4033-4035)GGC>GGT	p.G1345G		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1345					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCCTTTGTGGCGGGGGTCGCG	0.692													10	21					0	0	1	0	0	
GGN	199720	broad.mit.edu	37	19	38877282	38877282	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:38877282C>T	uc002oij.1	-	3	755	c.620G>A	c.(619-621)CGC>CAC	p.R207H	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Missense_Mutation_p.R124H	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	207	Interaction with GGNBP1 (By similarity).|Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCCTGGTTGCGGGGCCCAGC	0.701													9	14					0	0	1	0	0	
RYR1	6261	broad.mit.edu	37	19	38951153	38951153	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:38951153C>T	uc002oit.2	+	20	2629	c.2499C>T	c.(2497-2499)CCC>CCT	p.P833P	RYR1_uc002oiu.2_Silent_p.P833P	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	833	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGAGGGGCCCCGGGGGCCTC	0.642													39	104					0	0	1	0	0	
RYR1	6261	broad.mit.edu	37	19	38956958	38956958	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:38956958G>A	uc002oit.2	+	24	3228	c.3098G>A	c.(3097-3099)AGC>AAC	p.S1033N	RYR1_uc002oiu.2_Missense_Mutation_p.S1033N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1033	6 X approximate repeats.|2.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCAAGCGCAGCAACCGGGAC	0.632													3	15					0	0	1	0	0	
FCGBP	8857	broad.mit.edu	37	19	40421158	40421158	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:40421158G>A	uc002omp.3	-	5	2771	c.2763C>T	c.(2761-2763)CGC>CGT	p.R921R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	921	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCCGCACGGCGCGCGTGTAGC	0.711													5	20					0	0	1	0	0	
MAP3K10	4294	broad.mit.edu	37	19	40718777	40718777	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:40718777C>T	uc002ona.2	+	7	1906	c.1618C>T	c.(1618-1620)CGC>TGC	p.R540C	MAP3K10_uc002onb.2_5'UTR	NM_002446	NP_002437	Q02779	M3K10_HUMAN	mitogen-activated protein kinase kinase kinase	540					activation of JUN kinase activity|induction of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of JNK cascade|protein autophosphorylation|smoothened signaling pathway	cytoplasm	ATP binding|bHLH transcription factor binding|JUN kinase kinase kinase activity|protein homodimerization activity|transcription corepressor activity			ovary(2)|lung(2)|skin(1)|pancreas(1)	6						GACATGGAGCCGCGGTGGGCC	0.542													7	11					0	0	1	0	0	
ARHGEF1	9138	broad.mit.edu	37	19	42406062	42406062	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:42406062C>T	uc002orx.2	+	15	1402	c.1293C>T	c.(1291-1293)CAC>CAT	p.H431H	ARHGEF1_uc002ory.2_Silent_p.H398H|ARHGEF1_uc002orz.2_Silent_p.H269H|ARHGEF1_uc002osa.2_Silent_p.H446H|ARHGEF1_uc002osb.2_Silent_p.H413H|ARHGEF1_uc002osc.2_Silent_p.H185H|ARHGEF1_uc002osd.2_Silent_p.H90H|ARHGEF1_uc002ose.2_5'Flank	NM_004706	NP_004697	Q92888	ARHG1_HUMAN	Rho guanine nucleotide exchange factor 1 isoform	431	DH.				cell proliferation|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(3)|large_intestine(1)	4		Renal(1328;0.000518)|Hepatocellular(1079;0.0046)|Medulloblastoma(540;0.0425)		Epithelial(262;5.89e-46)|GBM - Glioblastoma multiforme(1328;2.49e-12)|STAD - Stomach adenocarcinoma(1328;0.00644)		AGGCGGCCCACGTGCGCATGC	0.622													16	32					0	0	1	0	0	
ZNF574	64763	broad.mit.edu	37	19	42583217	42583217	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:42583217C>T	uc002osm.3	+	2	628	c.459C>T	c.(457-459)CCC>CCT	p.P153P	ZNF574_uc002osk.3_Silent_p.P243P	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	153					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				GGGCCACACCCACCAAGGCTC	0.637													30	92					0	0	1	0	0	
IRGC	56269	broad.mit.edu	37	19	44223329	44223329	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:44223329G>A	uc002oxh.2	+	2	766	c.619G>A	c.(619-621)GTG>ATG	p.V207M		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	207						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				GGAGGCCGGCGTGGCTGACCC	0.711													16	50					0	0	1	0	0	
ZNF221	7638	broad.mit.edu	37	19	44470166	44470166	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:44470166G>A	uc002oxx.2	+	6	840	c.512G>A	c.(511-513)CGT>CAT	p.R171H	ZNF221_uc010ejb.1_Missense_Mutation_p.R171H|ZNF221_uc010xws.1_Missense_Mutation_p.R171H	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	171	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				AAACCTTACCGTTGTAATGAA	0.418													24	99					0	0	1	0	0	
CEACAM20	125931	broad.mit.edu	37	19	45029181	45029181	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45029181G>T	uc010ejn.1	-	2	165	c.149C>A	c.(148-150)CCT>CAT	p.P50H	CEACAM20_uc010ejo.1_Missense_Mutation_p.P50H|CEACAM20_uc010ejp.1_Missense_Mutation_p.P50H|CEACAM20_uc010ejq.1_Missense_Mutation_p.P50H	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	50	Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				CCCAAACACAGGCAGAACAAC	0.557													20	68					9.95505e-16	1.0861e-15	1	1	0	
CEACAM16	388551	broad.mit.edu	37	19	45207422	45207422	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45207422G>A	uc010xxd.1	+	4	723	c.517G>A	c.(517-519)GTC>ATC	p.V173I	CEACAM16_uc002ozq.2_Missense_Mutation_p.V232I	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	173										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				GGCCCTGCCCGTCGCTCTCCG	0.706													4	7					0	0	1	0	0	
CEACAM16	388551	broad.mit.edu	37	19	45209019	45209019	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45209019G>A	uc010xxd.1	+	5	1027	c.821G>A	c.(820-822)GGC>GAC	p.G274D	CEACAM16_uc002ozq.2_Missense_Mutation_p.G333D	NM_001039213	NP_001034302	A7LI12	A7LI12_HUMAN	carcinoembryonic antigen-related cell adhesion	274										ovary(1)	1	Lung NSC(12;0.000698)|all_lung(12;0.002)	Prostate(69;0.0376)|Ovarian(192;0.231)				CTAAAGAACGGCCAAGACCAC	0.567													19	53					0	0	1	0	0	
APOE	348	broad.mit.edu	37	19	45412333	45412333	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45412333G>A	uc002pab.2	+	4	863	c.780G>A	c.(778-780)AAG>AAA	p.K260K		NM_000041	NP_000032	P02649	APOE_HUMAN	apolipoprotein E precursor	260					anti-apoptosis|Cdc42 protein signal transduction|cell death|cGMP-mediated signaling|cholesterol efflux|cholesterol homeostasis|chylomicron remnant clearance|cytoskeleton organization|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|induction of apoptosis|intracellular transport|negative regulation of blood vessel endothelial cell migration|negative regulation of cholesterol biosynthetic process|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of platelet activation|nitric oxide mediated signal transduction|phospholipid efflux|positive regulation of cGMP biosynthetic process|positive regulation of cholesterol efflux|positive regulation of cholesterol esterification|positive regulation of low-density lipoprotein particle receptor catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of nitric-oxide synthase activity|receptor-mediated endocytosis|regulation of axon extension|regulation of neuronal synaptic plasticity|response to reactive oxygen species|reverse cholesterol transport|synaptic transmission, cholinergic|triglyceride metabolic process|very-low-density lipoprotein particle clearance|very-low-density lipoprotein particle remodeling	chylomicron|dendrite|high-density lipoprotein particle|intermediate-density lipoprotein particle|low-density lipoprotein particle|neuronal cell body|very-low-density lipoprotein particle	antioxidant activity|beta-amyloid binding|heparin binding|low-density lipoprotein particle receptor binding|metal chelating activity|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding|protein heterodimerization activity|protein homodimerization activity|tau protein binding|very-low-density lipoprotein particle receptor binding				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|Epithelial(262;0.174)	Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	TGCGCGCCAAGCTGGAGGAGC	0.711													4	5					0	0	1	0	0	
NKPD1	284353	broad.mit.edu	37	19	45655517	45655517	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45655517G>A	uc010xxi.1	-	4	2178	c.2178C>T	c.(2176-2178)GGC>GGT	p.G726G		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		GGAAGTCGGCGCCCAGGAAGC	0.672													4	11					0	0	1	0	0	
RTN2	6253	broad.mit.edu	37	19	45997939	45997939	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:45997939C>T	uc002pcb.2	-	3	632	c.404G>A	c.(403-405)CGC>CAC	p.R135H	RTN2_uc002pcc.2_Missense_Mutation_p.R135H|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	135						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		TTCCAGAGGGCGCTCGGATGG	0.687													28	79					0	0	1	0	0	
FBXO46	23403	broad.mit.edu	37	19	46216144	46216144	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:46216144C>T	uc002pcy.2	-	2	735	c.610G>A	c.(610-612)GCC>ACC	p.A204T	FBXO46_uc002pcz.2_Missense_Mutation_p.A204T	NM_001080469	NP_001073938	Q6PJ61	FBX46_HUMAN	F-box protein 46	204							protein binding			ovary(1)|lung(1)|breast(1)	3		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00568)|GBM - Glioblastoma multiforme(486;0.0844)|Epithelial(262;0.201)		CCTTGCTCGGCGGACACAAAG	0.682													9	23					0	0	1	0	0	
PRKD2	25865	broad.mit.edu	37	19	47177820	47177820	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:47177820T>C	uc002pfh.2	-	19	2939	c.2597A>G	c.(2596-2598)CAC>CGC	p.H866R	PRKD2_uc002pfd.2_Missense_Mutation_p.H240R|PRKD2_uc010eks.2_Missense_Mutation_p.H269R|PRKD2_uc010ekt.2_Missense_Mutation_p.H133R|PRKD2_uc002pfe.2_Missense_Mutation_p.H396R|PRKD2_uc002pff.2_Missense_Mutation_p.H386R|PRKD2_uc002pfg.2_Missense_Mutation_p.H709R|PRKD2_uc002pfi.2_Missense_Mutation_p.H866R|PRKD2_uc002pfj.2_Missense_Mutation_p.H866R|PRKD2_uc010xye.1_Missense_Mutation_p.H876R|PRKD2_uc002pfk.2_Missense_Mutation_p.H709R	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	866					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		CTGCATGTCGTGGTCCTGTGG	0.652													10	23					0	0	1	0	0	
EHD2	30846	broad.mit.edu	37	19	48220236	48220236	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:48220236C>T	uc002phj.3	+	2	617	c.367C>T	c.(367-369)CGC>TGC	p.R123C	EHD2_uc010xyu.1_Intron	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	123					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		CAAGCCCTTCCGCAAACTCAA	0.542													21	71					0	0	1	0	0	
FUT1	2523	broad.mit.edu	37	19	49253904	49253904	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:49253904C>T	uc002pkk.2	-	4	1610	c.635G>A	c.(634-636)CGC>CAC	p.R212H		NM_000148	NP_000139	P19526	FUT1_HUMAN	fucosyltransferase 1	212	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to plasma membrane|membrane fraction	galactoside 2-alpha-L-fucosyltransferase activity			ovary(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000135)|all cancers(93;0.000354)|Epithelial(262;0.0191)|GBM - Glioblastoma multiforme(486;0.0222)		GACAAAGGTGCGCGGGCGGTC	0.677													52	134					0	0	1	0	0	
FGF21	26291	broad.mit.edu	37	19	49260233	49260233	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:49260233G>A	uc002pkn.1	+	3	858	c.286G>A	c.(286-288)GTC>ATC	p.V96I	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.V96I	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	96					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		AATCTTGGGAGTCAAGACATC	0.567													45	146					0	0	1	0	0	
PRR12	57479	broad.mit.edu	37	19	50099902	50099902	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:50099902G>A	uc002poo.3	+	4	2310	c.2310G>A	c.(2308-2310)ACG>ACA	p.T770T		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CACCTCCCACGGCCCAGTCTA	0.711													16	29					0	0	1	0	0	
SHANK1	50944	broad.mit.edu	37	19	51169601	51169601	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:51169601A>G	uc002psx.1	-	22	5635	c.5616T>C	c.(5614-5616)AGT>AGC	p.S1872S	SHANK1_uc002psw.1_Silent_p.S1256S	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1872					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		AGCTGAGTTCACTGATGATGC	0.697													12	22					0	0	1	0	0	
ACPT	93650	broad.mit.edu	37	19	51296990	51296990	+	Missense_Mutation	SNP	G	A	A	rs141753566	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:51296990G>A	uc002pta.1	+	7	695	c.695G>A	c.(694-696)CGG>CAG	p.R232Q		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	232	Extracellular (Potential).					integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GATGTCCTGCGGACTCTTGCC	0.637													12	51					0	0	1	0	0	
SIGLEC12	89858	broad.mit.edu	37	19	52002870	52002870	+	Silent	SNP	C	T	T	rs148225737		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:52002870C>T	uc002pwx.1	-	3	965	c.909G>A	c.(907-909)ACG>ACA	p.T303T	SIGLEC12_uc002pww.1_Silent_p.T185T|SIGLEC12_uc010eoy.1_Silent_p.T30T	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	303	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TCGTGGGGGGCGTCCCCTGTT	0.662													26	68					0	0	1	0	0	
FPR2	2358	broad.mit.edu	37	19	52271988	52271988	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:52271988G>A	uc002pxr.2	+	2	122	c.77G>A	c.(76-78)CGG>CAG	p.R26Q	FPR2_uc002pxs.3_Missense_Mutation_p.R26Q|FPR2_uc010epf.2_Missense_Mutation_p.R26Q	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	26	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						ACTGTTCTGCGGATCCTCCCA	0.532													25	48					0	0	1	0	0	
ZNF610	162963	broad.mit.edu	37	19	52869924	52869924	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:52869924T>C	uc002pyx.3	+	6	1699	c.1293T>C	c.(1291-1293)AAT>AAC	p.N431N	ZNF610_uc002pyy.3_Silent_p.N431N|ZNF610_uc002pyz.3_Silent_p.N388N|ZNF610_uc002pza.2_Silent_p.N431N	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	431	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		ACAAGTGTAATGCATGTGGCA	0.398													12	44					0	0	1	0	0	
ZNF845	91664	broad.mit.edu	37	19	53854380	53854380	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:53854380T>C	uc010ydv.1	+	4	569	c.452T>C	c.(451-453)CTC>CCC	p.L151P	ZNF845_uc010ydw.1_Missense_Mutation_p.L151P	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTGCCTGAACTCCACATGTTT	0.428													51	138					0	0	1	0	0	
NLRP12	91662	broad.mit.edu	37	19	54312988	54312988	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:54312988G>A	uc002qch.3	-	3	2145	c.1925C>T	c.(1924-1926)GCC>GTC	p.A642V	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.A642V|NLRP12_uc002qcj.3_Missense_Mutation_p.A642V|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.A642V	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	642					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CATCTTGGAGGCAATGTTGCT	0.587													22	52					0	0	1	0	0	
ISOC2	79763	broad.mit.edu	37	19	55966693	55966693	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:55966693G>A	uc002qlb.2	-	4	527	c.353C>T	c.(352-354)ACG>ATG	p.T118M	ISOC2_uc002qla.2_Missense_Mutation_p.T134M|ISOC2_uc002qlc.2_Missense_Mutation_p.T48M	NM_001136201	NP_001129673	Q96AB3	ISOC2_HUMAN	isochorismatase domain containing 2 isoform 1	118					protein destabilization	mitochondrion|nucleus	catalytic activity|protein binding			ovary(1)	1	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0535)		GTCCAGGGTCGTGTTCTGTGG	0.632													12	28					0	0	1	0	0	
ZNF628	89887	broad.mit.edu	37	19	55995151	55995151	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:55995151C>T	uc002qld.2	+	3	3144	c.2579C>T	c.(2578-2580)ACG>ATG	p.T860M	NAT14_uc002qle.1_5'Flank	NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	860	4.|4 X approximate tandem repeats.					nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		GAGGTGACCACGGTCCAGCTC	0.652													11	35					0	0	1	0	0	
ZNF460	10794	broad.mit.edu	37	19	57802724	57802724	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:57802724G>A	uc002qog.2	+	3	1137	c.815G>A	c.(814-816)CGG>CAG	p.R272Q	ZNF460_uc010ygv.1_Missense_Mutation_p.R231Q	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	272	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CGGCACCAGCGGGTTCACAGT	0.512													33	83					0	0	1	0	0	
ZSCAN1	284312	broad.mit.edu	37	19	58565161	58565161	+	Silent	SNP	C	T	T	rs148203449	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:58565161C>T	uc002qrc.1	+	6	1216	c.969C>T	c.(967-969)CCC>CCT	p.P323P		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	323	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TTCCGTGCCCCGAGTGTGGCA	0.627													24	80					0	0	1	0	0	
ZNF8	7554	broad.mit.edu	37	19	58806666	58806666	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:58806666C>T	uc002qry.1	+	4	1622	c.1492C>T	c.(1492-1494)CGA>TGA	p.R498*	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	498					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		GCCCCATGGGCGAAGCCGGCG	0.557													62	199					0	0	1	0	0	
RPS5	6193	broad.mit.edu	37	19	58904472	58904472	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:58904472G>A	uc002qsn.2	+	3	310	c.238G>A	c.(238-240)GGC>AGC	p.G80S	RPS5_uc002qso.2_Missense_Mutation_p.G80S	NM_001009	NP_001000	P46782	RS5_HUMAN	ribosomal protein S5	80					endocrine pancreas development|regulation of translational fidelity|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	mRNA binding|structural constituent of ribosome				0		all_cancers(17;1.71e-22)|all_epithelial(17;1.69e-16)|Lung NSC(17;2.25e-06)|all_lung(17;9.97e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Breast(46;0.0194)|Ovarian(87;0.0443)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.171)|GBM - Glioblastoma multiforme(193;0.0323)|Lung(386;0.0543)|LUSC - Lung squamous cell carcinoma(496;0.176)		GATGATGCACGGCCGCAACAA	0.577													12	60					0	0	1	0	0	
ZNF132	7691	broad.mit.edu	37	19	58945448	58945448	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:58945448C>T	uc002qst.3	-	3	1764	c.1363G>A	c.(1363-1365)GGA>AGA	p.G455R		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	455						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		GGCCGTTCTCCGGTGTGAACT	0.473													27	83					0	0	1	0	0	
MZF1	7593	broad.mit.edu	37	19	59082434	59082434	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:59082434C>A	uc002qto.2	-	2	884	c.323G>T	c.(322-324)CGG>CTG	p.R108L	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.R108L|MZF1_uc010euu.1_Missense_Mutation_p.R149L	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	108	SCAN box.				viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		GCTGCCTGGCCGCTGCCCCTG	0.687													14	22					1.05317e-09	1.11926e-09	1	1	0	
NT5C1B	93034	broad.mit.edu	37	2	18766000	18766000	+	Missense_Mutation	SNP	C	T	T	rs150624428		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:18766000C>T	uc002rcz.2	-	5	787	c.683G>A	c.(682-684)CGG>CAG	p.R228Q	NT5C1B_uc002rcy.2_Missense_Mutation_p.R228Q|NT5C1B_uc010exr.2_Missense_Mutation_p.R170Q|NT5C1B_uc010yju.1_Missense_Mutation_p.R168Q|NT5C1B_uc002rda.2_Missense_Mutation_p.R168Q|NT5C1B_uc010yjv.1_Missense_Mutation_p.R245Q|NT5C1B_uc010yjw.1_Missense_Mutation_p.R211Q|NT5C1B_uc010exs.2_Missense_Mutation_p.R230Q|NT5C1B_uc002rdb.1_Missense_Mutation_p.R20Q	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	228					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CTGCGAGTCCCGGGTCTGGCG	0.682													6	24					0	0	1	0	0	
KIF3C	3797	broad.mit.edu	37	2	26204561	26204561	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:26204561C>T	uc002rgu.2	-	1	883	c.226G>A	c.(226-228)GAA>AAA	p.E76K	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Missense_Mutation_p.E76K	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	76	Kinesin-motor.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCACGGTTTCGTCATACAGG	0.627													27	90					0	0	1	0	0	
DPYSL5	56896	broad.mit.edu	37	2	27157486	27157486	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:27157486G>A	uc002rhu.3	+	8	989	c.831G>A	c.(829-831)ACG>ACA	p.T277T	DPYSL5_uc002rhv.3_Silent_p.T277T	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	277					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACATGCCACGCTGACAGGCT	0.522													69	181					0	0	1	0	0	
MPV17	4358	broad.mit.edu	37	2	27535564	27535564	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:27535564T>C	uc002rjr.2	-	3	309	c.262A>G	c.(262-264)AAG>GAG	p.K88E	MPV17_uc002rjq.2_Missense_Mutation_p.K88E|MPV17_uc002rjs.2_Missense_Mutation_p.K88E|MPV17_uc002rjt.2_RNA	NM_002437	NP_002428	P39210	MPV17_HUMAN	Mpv17 protein	88					cellular response to reactive oxygen species|glomerular basement membrane development|homeostatic process|inner ear development|mitochondrial genome maintenance|regulation of reactive oxygen species metabolic process	integral to peroxisomal membrane|mitochondrial inner membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AACAACATCTTCTTCAGTGCA	0.522													16	48					0	0	1	0	0	
GTF3C2	2976	broad.mit.edu	37	2	27565017	27565017	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:27565017A>G	uc002rjv.1	-	5	1016	c.653T>C	c.(652-654)GTG>GCG	p.V218A	GTF3C2_uc002rju.1_Missense_Mutation_p.V229A|GTF3C2_uc002rjw.1_Missense_Mutation_p.V218A|GTF3C2_uc010eyz.1_Missense_Mutation_p.V218A	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	218						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGGCTGCTCACCTTGGGGCC	0.587													18	49					0	0	1	0	0	
ALK	238	broad.mit.edu	37	2	29416153	29416153	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:29416153T>C	uc002rmy.2	-	29	5707	c.4800A>G	c.(4798-4800)GGA>GGG	p.G1600G	ALK_uc010ymo.1_Silent_p.G532G	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1600	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	AATGACCAGCTCCAGGGGCAG	0.542			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	49					0	0	1	0	0	
HEATR5B	54497	broad.mit.edu	37	2	37297377	37297377	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:37297377G>A	uc002rpp.1	-	7	1019	c.923C>T	c.(922-924)ACG>ATG	p.T308M		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	308							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ACAAACCTGCGTAACTCCAAC	0.299													41	139					0	0	1	0	0	
SLC8A1	6546	broad.mit.edu	37	2	40656208	40656208	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:40656208G>T	uc002rrx.2	-	1	1237	c.1213C>A	c.(1213-1215)CCT>ACT	p.P405T	SLC8A1_uc002rry.2_Missense_Mutation_p.P405T|SLC8A1_uc002rrz.2_Missense_Mutation_p.P405T|SLC8A1_uc002rsa.2_Missense_Mutation_p.P405T|SLC8A1_uc002rsd.3_Missense_Mutation_p.P405T|SLC8A1_uc002rsb.1_Missense_Mutation_p.P405T|SLC8A1_uc010fan.1_Missense_Mutation_p.P405T|SLC8A1_uc002rsc.1_Missense_Mutation_p.P405T	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	405	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TTACTAACAGGGTCATTTTCA	0.468													22	52					1.22574e-08	1.29877e-08	1	1	0	
MTA3	57504	broad.mit.edu	37	2	42935094	42935094	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:42935094G>A	uc002rso.1	+	14	1701	c.1031G>A	c.(1030-1032)AGA>AAA	p.R344K	MTA3_uc002rsp.1_Missense_Mutation_p.R344K|MTA3_uc002rsq.2_Missense_Mutation_p.R401K|MTA3_uc002rsr.2_Missense_Mutation_p.R400K	NM_020744	NP_065795	Q9BTC8	MTA3_HUMAN	metastasis associated 1 family, member 3	401	GATA-type; atypical.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						ATGCAGTGTAGATTATGTGCA	0.383													22	61					0	0	1	0	0	
ZFP36L2	678	broad.mit.edu	37	2	43452232	43452232	+	Silent	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:43452232G>C	uc002rsv.3	-	2	1002	c.711C>G	c.(709-711)GGC>GGG	p.G237G	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	237					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				CATCGCGCGTGCCAAAGGCAC	0.597													3	29					0	0	1	0	0	
ABCG8	64241	broad.mit.edu	37	2	44078772	44078772	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:44078772C>T	uc002rtq.2	+	4	462	c.372C>T	c.(370-372)GGC>GGT	p.G124G	ABCG8_uc010yoa.1_Silent_p.G124G	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	124	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GAGGTCACGGCGGCAAGATCA	0.617													23	58					0	0	1	0	0	
FOXN2	3344	broad.mit.edu	37	2	48602243	48602243	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:48602243C>T	uc002rwh.1	+	7	1272	c.957C>T	c.(955-957)AGC>AGT	p.S319S		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	319					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			CCAGGTCTAGCGTGTCTTCCC	0.438													16	36					0	0	1	0	0	
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808508	48808508	+	Silent	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:48808508A>C	uc010yol.1	+	1	783	c.736A>C	c.(736-738)AGA>CGA	p.R246R	STON1_uc002rwo.3_Silent_p.R246R|STON1_uc010fbm.2_Silent_p.R246R|STON1-GTF2A1L_uc002rwp.1_Silent_p.R246R|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Silent_p.R246R	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	246					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGACTCACTTAGAAGTTTGTC	0.433													22	75					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	51254659	51254659	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:51254659G>A	uc010fbq.2	-	2	2230	c.753C>T	c.(751-753)CGC>CGT	p.R251R	NRXN1_uc002rxe.3_Silent_p.R251R|NRXN1_uc002rxd.1_Silent_p.R251R	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			AGTCCTTGCCGCGGAAGCCGG	0.746													9	33					0	0	1	0	0	
PSME4	23198	broad.mit.edu	37	2	54122183	54122183	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:54122183C>T	uc002rxp.2	-	34	3929	c.3873G>A	c.(3871-3873)GAG>GAA	p.E1291E	PSME4_uc010yop.1_Silent_p.E1177E|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Silent_p.E666E|PSME4_uc010fbv.1_Silent_p.E435E	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1291					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GCTTAGGCTGCTCTTCCACAC	0.383													23	101					0	0	1	0	0	
BCL11A	53335	broad.mit.edu	37	2	60688530	60688530	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:60688530G>A	uc002sae.1	-	4	1745	c.1517C>T	c.(1516-1518)ACG>ATG	p.T506M	BCL11A_uc002sab.2_Missense_Mutation_p.T506M|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.T175M|BCL11A_uc010ypj.1_Missense_Mutation_p.T472M|BCL11A_uc002sad.1_Missense_Mutation_p.T354M|BCL11A_uc002saf.1_Missense_Mutation_p.T472M	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	506	Glu-rich.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTCGCTCTCCGTCAGctcctc	0.453			T	IGH@	B-CLL								3	11					0	0	1	0	0	
CEP68	23177	broad.mit.edu	37	2	65296839	65296839	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:65296839C>T	uc002sdl.3	+	2	475	c.261C>T	c.(259-261)AAC>AAT	p.N87N	CEP68_uc002sdj.2_Silent_p.N87N|CEP68_uc010yqb.1_Silent_p.N87N|CEP68_uc002sdk.3_Silent_p.N87N|CEP68_uc010yqc.1_Silent_p.N87N|CEP68_uc010yqd.1_Silent_p.N87N	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	87					centrosome organization	centrosome				skin(1)	1						GTGATGCCAACAGAGAGCCCG	0.632													19	43					0	0	1	0	0	
VAX2	25806	broad.mit.edu	37	2	71148374	71148374	+	Missense_Mutation	SNP	C	T	T	rs150176075		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:71148374C>T	uc002shh.2	+	2	426	c.394C>T	c.(394-396)CGC>TGC	p.R132C		NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	132	Homeobox.				ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGCCGCGAGCGCACTGAGCT	0.657													16	48					0	0	1	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71191897	71191897	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:71191897A>C	uc002shj.2	+	13	1367	c.1280A>C	c.(1279-1281)CAG>CCG	p.Q427P	ATP6V1B1_uc010fdv.2_Missense_Mutation_p.Q410P|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.Q385P	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	427					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						AAGGACGTGCAGGCCATGAAG	0.607											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	36					0	0	1	0	0	
C2orf7	84279	broad.mit.edu	37	2	73455925	73455925	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:73455925G>A	uc002siy.2	-	4	512	c.444C>T	c.(442-444)GAC>GAT	p.D148D		NM_032319	NP_115695	Q9BSG0	PADC1_HUMAN	chromosome 2 open reading frame 7 precursor	148	PA.					extracellular region					0						GCCCTCACCCGTCTCGGCCGA	0.597													14	17					0	0	1	0	0	
RTKN	6242	broad.mit.edu	37	2	74653396	74653396	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:74653396G>A	uc002sle.2	-	12	1783	c.1666C>T	c.(1666-1668)CGC>TGC	p.R556C	RTKN_uc002slc.2_Missense_Mutation_p.R543C|RTKN_uc002sld.2_Missense_Mutation_p.R506C	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	556					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						AGCCAAGTGCGAGGTTGGCCT	0.622													59	207					0	0	1	0	0	
TACR1	6869	broad.mit.edu	37	2	75278554	75278554	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:75278554G>A	uc002sng.2	-	4	1341	c.756C>T	c.(754-756)GTC>GTT	p.V252V	TACR1_uc002snh.2_Silent_p.V252V	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	252	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	TGCACACCACGACAATCATCA	0.562													17	40					0	0	1	0	0	
RMND5A	64795	broad.mit.edu	37	2	86993070	86993070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:86993070G>A	uc010ytm.1	+	6	1154	c.777G>A	c.(775-777)TGG>TGA	p.W259*	RMND5A_uc002srs.3_Intron|RMND5A_uc002srr.2_Nonsense_Mutation_p.W259*	NM_022780	NP_073617	Q9H871	RMD5A_HUMAN	required for meiotic nuclear division 5 homolog	259										ovary(1)|skin(1)	2						CAAACCAGTGGGCTGATATCT	0.483													5	93					0	0	1	0	0	
FER1L5	90342	broad.mit.edu	37	2	97366180	97366180	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:97366180A>G	uc010fia.2	+	44	5123	c.5123A>G	c.(5122-5124)TAC>TGC	p.Y1708C	FER1L5_uc002sws.3_Missense_Mutation_p.Y426C|FER1L5_uc002swt.3_Missense_Mutation_p.Y426C|FER1L5_uc010yus.1_Missense_Mutation_p.Y425C	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1708						integral to membrane				ovary(1)	1						CGCACACTGTACAGCCACAGC	0.597													20	64					0	0	1	0	0	
FER1L5	90342	broad.mit.edu	37	2	97368480	97368480	+	Splice_Site	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:97368480T>C	uc010fia.2	+	47	5505	c.5505_splice	c.e47+2	p.K1835_splice	FER1L5_uc002sws.3_Splice_Site_p.K544_splice|FER1L5_uc002swt.3_Splice_Site_p.K544_splice|FER1L5_uc010yus.1_Splice_Site_p.K543_splice	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2							integral to membrane				ovary(1)	1						AGCCAGAAGGTAACAGGCCTG	0.622													5	18					0	0	1	0	0	
VWA3B	200403	broad.mit.edu	37	2	98744813	98744813	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:98744813G>A	uc002syo.2	+	6	1078	c.814G>A	c.(814-816)GCC>ACC	p.A272T	VWA3B_uc010yvh.1_Missense_Mutation_p.A122T|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Missense_Mutation_p.A272T|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	272										ovary(3)|large_intestine(2)|skin(1)	6						GTCCTTCAACGCCAGAGGAGA	0.517													27	67					0	0	1	0	0	
AFF3	3899	broad.mit.edu	37	2	100170816	100170816	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:100170816G>A	uc002tag.2	-	23	3752	c.3516C>T	c.(3514-3516)TAC>TAT	p.Y1172Y	AFF3_uc002taf.2_Silent_p.Y1197Y	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1172					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCCAGTAGTCGTAGCTGTGCA	0.552													31	98					0	0	1	0	0	
SLC9A2	6549	broad.mit.edu	37	2	103324646	103324646	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:103324646C>T	uc002tca.2	+	12	2279	c.2137C>T	c.(2137-2139)CGC>TGC	p.R713C		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	713	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						CAGAGCCAGGCGCTTCTTGCC	0.527													31	126					0	0	1	0	0	
POU3F3	5455	broad.mit.edu	37	2	105472918	105472918	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:105472918C>T	uc010ywg.1	+	1	950	c.950C>T	c.(949-951)CCG>CTG	p.P317L		NM_006236	NP_006227	P20264	PO3F3_HUMAN	POU class 3 homeobox 3	317	POU-specific.				metanephric ascending thin limb development|metanephric DCT cell differentiation|metanephric macula densa development|metanephric thick ascending limb development|negative regulation of apoptosis|positive regulation of cell proliferation	nucleus	sequence-specific DNA binding			ovary(1)	1						GAGGACACGCCGACGTCGGAC	0.627													3	19					0	0	1	0	0	
ST6GAL2	84620	broad.mit.edu	37	2	107459935	107459935	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:107459935G>A	uc002tdq.2	-	2	618	c.499C>T	c.(499-501)CAG>TAG	p.Q167*	ST6GAL2_uc002tdr.2_Nonsense_Mutation_p.Q167*|ST6GAL2_uc002tds.3_Nonsense_Mutation_p.Q167*	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	167	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTCTGGACCTGTGCAGCCGGA	0.662													50	139					0	0	1	0	0	
SULT1C3	442038	broad.mit.edu	37	2	108875249	108875249	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:108875249C>T	uc010ywo.1	+	5	586	c.586C>T	c.(586-588)CGG>TGG	p.R196W		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	196						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						AGACATGCACCGGATCCTCTA	0.463													22	53					0	0	1	0	0	
C1QL2	165257	broad.mit.edu	37	2	119915206	119915206	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:119915206C>T	uc002tlo.2	-	1	1266	c.640G>A	c.(640-642)GGC>AGC	p.G214S		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	214	C1q.					collagen				pancreas(1)	1						GTGCCGTCGCCGCCGCGCATG	0.637										HNSCC(49;0.14)			10	45					0	0	1	0	0	
BIN1	274	broad.mit.edu	37	2	127828171	127828171	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:127828171C>A	uc002tns.1	-	4	618	c.273G>T	c.(271-273)GAG>GAT	p.E91D	BIN1_uc010yzf.1_Missense_Mutation_p.E67D|BIN1_uc010yzg.1_Missense_Mutation_p.E91D|BIN1_uc002tnu.1_Missense_Mutation_p.E91D|BIN1_uc002toa.1_Missense_Mutation_p.E91D|BIN1_uc002tnt.1_Missense_Mutation_p.E91D|BIN1_uc002tnv.1_Missense_Mutation_p.E91D|BIN1_uc002tnw.1_Missense_Mutation_p.E91D|BIN1_uc002tnx.1_Missense_Mutation_p.E91D|BIN1_uc002tny.1_Missense_Mutation_p.E91D|BIN1_uc002tnz.1_Missense_Mutation_p.E91D|BIN1_uc002tob.1_Missense_Mutation_p.E91D|BIN1_uc002toc.1_Missense_Mutation_p.E91D	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	91	BAR.|Interaction with BIN2.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		GCCAATCGGGCTCATACACCT	0.592													33	115					1.45844e-13	1.57665e-13	1	1	0	
MGAT5	4249	broad.mit.edu	37	2	135099177	135099177	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:135099177G>A	uc002ttv.1	+	7	969	c.824G>A	c.(823-825)GGA>GAA	p.G275E		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	275	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		GTTCACCTGGGACTCCTGACC	0.433													11	49					0	0	1	0	0	
DARS	1615	broad.mit.edu	37	2	136670055	136670055	+	Splice_Site	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:136670055C>T	uc002tux.1	-	13	1414	c.1230_splice	c.e13+1	p.P410_splice	DARS_uc010fnj.1_Splice_Site_p.P310_splice	NM_001349	NP_001340	P14868	SYDC_HUMAN	aspartyl-tRNA synthetase						aspartyl-tRNA aminoacylation|protein complex assembly	cytosol|nuclear membrane|plasma membrane|soluble fraction	aminoacylase activity|aspartate-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.168)	L-Aspartic Acid(DB00128)	AAATTACTTACGGGATTTCTT	0.299													28	66					0	0	1	0	0	
SPOPL	339745	broad.mit.edu	37	2	139316735	139316735	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:139316735A>G	uc002tvh.2	+	6	1024	c.624A>G	c.(622-624)GGA>GGG	p.G208G		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	208	BTB.					nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		TCGTGAGAGGACAAGAATTTA	0.333													48	100					0	0	1	0	0	
BAZ2B	29994	broad.mit.edu	37	2	160206241	160206241	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:160206241G>A	uc002uao.2	-	28	5193	c.4841C>T	c.(4840-4842)CCA>CTA	p.P1614L	BAZ2B_uc002uap.2_Missense_Mutation_p.P1578L	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1614					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TAAAGCAAATGGATTTAAGCC	0.433													10	48					0	0	1	0	0	
FASTKD1	79675	broad.mit.edu	37	2	170394546	170394546	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:170394546C>T	uc002uev.3	-	11	2439	c.2051G>A	c.(2050-2052)CGC>CAC	p.R684H	FASTKD1_uc002uew.3_Intron|FASTKD1_uc002uex.3_Intron	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	684					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						TTGACAGAAGCGGTCATGAAA	0.348													44	126					0	0	1	0	0	
HOXD10	3236	broad.mit.edu	37	2	176982219	176982219	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:176982219G>A	uc002ukj.2	+	1	728	c.658G>A	c.(658-660)GAG>AAG	p.E220K		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	220						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GGAGAGCCCCGAGGCCAAAGG	0.622													9	43					0	0	1	0	0	
HOXD4	3233	broad.mit.edu	37	2	177016724	177016724	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:177016724G>A	uc002uks.2	+	1	612	c.363G>A	c.(361-363)CCG>CCA	p.P121P		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	121						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		CCAAGCAGCCGCCCTCCGGGA	0.488													10	25					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179470216	179470216	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:179470216G>A	uc010zfg.1	-	228	46326	c.46102C>T	c.(46102-46104)CGT>TGT	p.R15368C	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R9063C|TTN_uc010zfi.1_Missense_Mutation_p.R8996C|TTN_uc010zfj.1_Missense_Mutation_p.R8871C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16295							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTTGACACGGAACTCATAC	0.388													14	70					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179482697	179482697	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:179482697A>G	uc010zfg.1	-	202	39901	c.39677T>C	c.(39676-39678)GTC>GCC	p.V13226A	TTN_uc010zfh.1_Missense_Mutation_p.V6921A|TTN_uc010zfi.1_Missense_Mutation_p.V6854A|TTN_uc010zfj.1_Missense_Mutation_p.V6729A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14153							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATTCAATGACGTAGTTTGT	0.453													30	87					0	0	1	0	0	
GLS	2744	broad.mit.edu	37	2	191818296	191818296	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:191818296G>T	uc002usf.2	+	15	1920	c.1656G>T	c.(1654-1656)AAG>AAT	p.K552N	GLS_uc002ush.2_Missense_Mutation_p.K213N|GLS_uc010zgi.1_Missense_Mutation_p.K123N|GLS_uc010zgj.1_Missense_Mutation_p.K57N	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	552					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CACAGGTAAAGTCAGTGATAA	0.388													41	174					2.38262e-10	2.54226e-10	1	1	0	
GTF3C3	9330	broad.mit.edu	37	2	197657712	197657712	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:197657712C>T	uc002uts.2	-	3	469	c.379G>A	c.(379-381)GTT>ATT	p.V127I	GTF3C3_uc010zgu.1_Missense_Mutation_p.V127I|GTF3C3_uc002utu.2_Missense_Mutation_p.V127I	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	127						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						CGATTGAGAACCATCTCCAAT	0.264													7	35					0	0	1	0	0	
HSPD1	3329	broad.mit.edu	37	2	198353798	198353798	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:198353798T>C	uc002uui.2	-	9	1280	c.1143A>G	c.(1141-1143)ACA>ACG	p.T381T	HSPD1_uc002uuj.2_Silent_p.T379T|HSPD1_uc010zgx.1_Silent_p.T372T|HSPD1_uc010fsm.2_Silent_p.T192T|HSPD1_uc002uuk.2_Silent_p.T381T	NM_002156	NP_002147	P10809	CH60_HUMAN	chaperonin	381					'de novo' protein folding|activation of caspase activity|B cell cytokine production|B cell proliferation|chaperone-mediated protein complex assembly|interspecies interaction between organisms|isotype switching to IgG isotypes|MyD88-dependent toll-like receptor signaling pathway|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of interferon-alpha production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of macrophage activation|positive regulation of T cell activation|positive regulation of T cell mediated immune response to tumor cell|protein maturation|protein refolding|protein stabilization|response to unfolded protein|T cell activation	cell surface|coated pit|coated vesicle|cytosol|early endosome|extracellular space|lipopolysaccharide receptor complex|mitochondrial inner membrane|mitochondrial matrix|stored secretory granule	ATP binding|ATPase activity|cell surface binding|chaperone binding|DNA replication origin binding|lipopolysaccharide binding|p53 binding|single-stranded DNA binding				0			Epithelial(96;0.225)			ATTCACTAGTTGTGACATCTA	0.363													30	88					0	0	1	0	0	
NDUFB3	4709	broad.mit.edu	37	2	201943745	201943745	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:201943745G>A	uc002uwx.3	+	2	463	c.140G>A	c.(139-141)CGC>CAC	p.R47H		NM_002491	NP_002482	O43676	NDUB3_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	47					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	CCATGGGGCCGGTAAGATGAA	0.383													12	44					0	0	1	0	0	
NOP58	51602	broad.mit.edu	37	2	203157521	203157521	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:203157521C>T	uc002uzb.2	+	9	952	c.802C>T	c.(802-804)CGA>TGA	p.R268*	SNORD11_uc002uzd.1_5'Flank	NM_015934	NP_057018	Q9Y2X3	NOP58_HUMAN	NOP58 ribonucleoprotein homolog	268	Nop.				cell growth|rRNA processing|snRNP protein import into nucleus	box C/D snoRNP complex|Cajal body|cytoplasm|pre-snoRNP complex	protein binding|snoRNA binding				0						CTCTGAATATCGAACCCAGCT	0.373													25	73					0	0	1	0	0	
FZD5	7855	broad.mit.edu	37	2	208631779	208631779	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:208631779G>A	uc002vcj.2	-	2	2095	c.1685C>T	c.(1684-1686)GCG>GTG	p.A562V		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	562	Cytoplasmic (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		GCCTGTGAGCGCGGCGCTCGC	0.652													17	33					0	0	1	0	0	
FZD5	7855	broad.mit.edu	37	2	208633129	208633129	+	Missense_Mutation	SNP	G	T	T	rs148031109		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:208633129G>T	uc002vcj.2	-	2	745	c.335C>A	c.(334-336)GCC>GAC	p.A112D		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	112	FZ.|Extracellular (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		GCCGGCCTTGGCGCGCTCGCA	0.706													6	17					0.0381472	0.0383991	1	1	0	
PTH2R	5746	broad.mit.edu	37	2	209307125	209307125	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:209307125G>A	uc002vdb.2	+	5	661	c.448G>A	c.(448-450)GTT>ATT	p.V150I	PTH2R_uc010zjb.1_Missense_Mutation_p.V161I	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	150	Helical; Name=1; (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		AATGTATACCGTTGGCTACTC	0.418													39	120					0	0	1	0	0	
ABCA12	26154	broad.mit.edu	37	2	215884358	215884358	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:215884358C>T	uc002vew.2	-	12	1670	c.1450G>A	c.(1450-1452)GCA>ACA	p.A484T	ABCA12_uc002vev.2_Missense_Mutation_p.A166T|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	484					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAGCTGGCTGCTATTTCGGTG	0.433													7	37					0	0	1	0	0	
MREG	55686	broad.mit.edu	37	2	216811832	216811832	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:216811832C>T	uc002vfo.2	-	3	556	c.260G>A	c.(259-261)TGG>TAG	p.W87*	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	87						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		GAGCTTCTGCCACTCCTGCAG	0.403													3	12					0	0	1	0	0	
ABCB6	10058	broad.mit.edu	37	2	220075526	220075526	+	Silent	SNP	G	A	A	rs145427690		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:220075526G>A	uc002vkc.1	-	16	2440	c.2163C>T	c.(2161-2163)GGC>GGT	p.G721G	ABCB6_uc010fwe.1_Silent_p.G675G	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	721	ABC transporter.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTCCCCGCTCGCCCACCTGTG	0.617													4	23					0	0	1	0	0	
GMPPA	29926	broad.mit.edu	37	2	220371039	220371039	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:220371039G>A	uc002vlr.2	+	12	1125	c.1057G>A	c.(1057-1059)GTG>ATG	p.V353M	GMPPA_uc002vls.2_Missense_Mutation_p.V353M|GMPPA_uc002vlt.2_Missense_Mutation_p.V406M|GMPPA_uc002vlu.2_Missense_Mutation_p.V406M|GMPPA_uc002vlv.2_Missense_Mutation_p.V353M|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Missense_Mutation_p.V353M	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	353					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		CTGGGCCCGCGTGGAGGGTAC	0.622													31	82					0	0	1	0	0	
EPHA4	2043	broad.mit.edu	37	2	222429021	222429021	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:222429021G>A	uc002vmq.2	-	3	295	c.253C>T	c.(253-255)CGA>TGA	p.R85*	EPHA4_uc002vmr.2_Nonsense_Mutation_p.R85*|EPHA4_uc010zlm.1_Nonsense_Mutation_p.R26*|EPHA4_uc010zln.1_Nonsense_Mutation_p.R85*	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	85	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CAATCAGTTCGTAGCCAGTTA	0.473													40	127					0	0	1	0	0	
KIAA1486	57624	broad.mit.edu	37	2	226447216	226447216	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:226447216G>A	uc002voe.2	+	4	1258	c.1083G>A	c.(1081-1083)ACG>ACA	p.T361T	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.T131T	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	361	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGGAGGTCACGAAGCTTCCCG	0.642													7	24					0	0	1	0	0	
B3GNT7	93010	broad.mit.edu	37	2	232263333	232263333	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:232263333T>C	uc002vrs.2	+	2	1083	c.903T>C	c.(901-903)GGT>GGC	p.G301G		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	301	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		CAGGCGGCGGTGGCTTCCTCA	0.652													7	24					0	0	1	0	0	
ECEL1	9427	broad.mit.edu	37	2	233346258	233346258	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:233346258G>A	uc002vsv.2	-	14	2152	c.1947C>T	c.(1945-1947)TGC>TGT	p.C649C	ECEL1_uc010fya.1_Silent_p.C647C|ECEL1_uc010fyb.1_Silent_p.C356C	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	649	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GACGGACGATGCACTCAGCCT	0.652													9	21					0	0	1	0	0	
TRPM8	79054	broad.mit.edu	37	2	234875353	234875353	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:234875353C>T	uc002vvh.2	+	15	2019	c.1979C>T	c.(1978-1980)GCG>GTG	p.A660V	TRPM8_uc010fyj.2_Missense_Mutation_p.A348V	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	660	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CTGGAGCTGGCGGTGGAGGCC	0.552													6	17					0	0	1	0	0	
COL6A3	1293	broad.mit.edu	37	2	238277427	238277427	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:238277427G>T	uc002vwl.2	-	10	4964	c.4679C>A	c.(4678-4680)GCC>GAC	p.A1560D	COL6A3_uc002vwo.2_Missense_Mutation_p.A1354D|COL6A3_uc010znj.1_Missense_Mutation_p.A953D	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1560	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GATCACCTGGGCGAACCTGGA	0.572													27	116					2.41591e-17	2.64659e-17	1	1	0	
ILKAP	80895	broad.mit.edu	37	2	239079299	239079299	+	Missense_Mutation	SNP	G	A	A	rs142248095		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:239079299G>A	uc002vxv.2	-	12	1187	c.1057C>T	c.(1057-1059)CGG>TGG	p.R353W	ILKAP_uc010zns.1_Missense_Mutation_p.R285W|ILKAP_uc002vxw.2_Missense_Mutation_p.R233W	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	353	PP2C-like.					cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		TTCCCTTCCCGGGTCTGGATC	0.587													19	34					0	0	1	0	0	
KIF1A	547	broad.mit.edu	37	2	241697895	241697895	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:241697895G>A	uc002vzy.2	-	25	2583	c.2437C>T	c.(2437-2439)CGG>TGG	p.R813W	KIF1A_uc010fzk.2_Missense_Mutation_p.R822W|KIF1A_uc002vzz.1_Missense_Mutation_p.R822W	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	813	Potential.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TACATCTCCCGCATCAGGTCC	0.647													10	15					0	0	1	0	0	
SNED1	25992	broad.mit.edu	37	2	242002305	242002305	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr2:242002305C>T	uc002wah.1	+	17	2355	c.2355C>T	c.(2353-2355)GGC>GGT	p.G785G	SNED1_uc002wai.1_5'Flank|SNED1_uc002waj.1_5'Flank|SNED1_uc002wak.2_5'Flank	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	785	EGF-like 11; calcium-binding (Potential).				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GCTATGAGGGCGCCCACTGTG	0.657													3	12					0	0	1	0	0	
RBCK1	10616	broad.mit.edu	37	20	408048	408048	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:408048C>A	uc002wdp.3	+	9	1814	c.1121C>A	c.(1120-1122)CCA>CAA	p.P374Q	RBCK1_uc010zpm.1_RNA|RBCK1_uc002wdq.3_Missense_Mutation_p.P332Q|RBCK1_uc010fzy.2_RNA|RBCK1_uc002wdr.3_Missense_Mutation_p.P204Q	NM_031229	NP_112506	Q9BYM8	HOIL1_HUMAN	RanBP-type and C3HC4-type zinc finger containing	374	IBR-type 1.				interspecies interaction between organisms|negative regulation of NF-kappaB transcription factor activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|proteasomal ubiquitin-dependent protein catabolic process|protein linear polyubiquitination|T cell receptor signaling pathway	LUBAC complex	protein binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0		all_epithelial(17;0.172)|Lung NSC(37;0.191)|Breast(17;0.231)				TGCAAGACCCCAGATTGCAAG	0.537													14	70					0.000151284	0.000156113	1	1	0	
CD93	22918	broad.mit.edu	37	20	23066072	23066072	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:23066072G>A	uc002wsv.2	-	1	906	c.758C>T	c.(757-759)TCG>TTG	p.S253L		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	253	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GAGGGGGCCCGAGCTGCCCCA	0.602													56	114					0	0	1	0	0	
GZF1	64412	broad.mit.edu	37	20	23350249	23350249	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:23350249C>T	uc010gdb.2	+	6	1830	c.1656C>T	c.(1654-1656)TGC>TGT	p.C552C	GZF1_uc002wsy.2_Silent_p.C552C|GZF1_uc010zsq.1_Silent_p.C76C|GZF1_uc010zsr.1_Silent_p.C61C|GZF1_uc002wsz.2_Silent_p.C552C	NM_022482	NP_071927	Q9H116	GZF1_HUMAN	GDNF-inducible zinc finger protein 1	552	C2H2-type 9.				transcription, DNA-dependent	nucleolus|nucleoplasm	sequence-specific DNA binding|zinc ion binding			kidney(1)	1	Lung NSC(19;0.0605)|Colorectal(13;0.0993)|all_lung(19;0.135)					GTGACCAGTGCGGCAAGCAGT	0.602													71	150					0	0	1	0	0	
CST5	1473	broad.mit.edu	37	20	23858244	23858244	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:23858244C>A	uc002wtr.1	-	2	310	c.243G>T	c.(241-243)GGG>GGT	p.G81G		NM_001900	NP_001891	P28325	CYTD_HUMAN	cystatin D precursor	81						extracellular region	cysteine-type endopeptidase inhibitor activity|protein binding				0						AGTAGTTCACCCCACCCACGA	0.532													15	70					2.61681e-11	2.81182e-11	1	1	0	
TMEM90B	79953	broad.mit.edu	37	20	24524045	24524045	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:24524045C>T	uc002wtw.1	+	2	945	c.312C>T	c.(310-312)GAC>GAT	p.D104D		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	104	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTGGGGGGACGGTGTGGCCG	0.632													47	76					0	0	1	0	0	
ACSS1	84532	broad.mit.edu	37	20	25011536	25011536	+	Missense_Mutation	SNP	G	A	A	rs112767555		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:25011536G>A	uc002wub.2	-	3	1368	c.490C>T	c.(490-492)CGT>TGT	p.R164C	ACSS1_uc002wuc.2_Missense_Mutation_p.R164C|ACSS1_uc010gdc.2_Missense_Mutation_p.R164C|ACSS1_uc002wua.2_Missense_Mutation_p.R81C	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	164					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CGGTCCCCACGGTGGACTCCA	0.602													10	51					0	0	1	0	0	
ZNF341	84905	broad.mit.edu	37	20	32354681	32354681	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:32354681C>T	uc002wzy.2	+	9	1267	c.1247C>T	c.(1246-1248)GCG>GTG	p.A416V	ZNF341_uc002wzx.2_Missense_Mutation_p.A409V|ZNF341_uc010geq.2_Missense_Mutation_p.A326V|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTGCCGGGTGCGCCACAGCCC	0.632													52	238					0	0	1	0	0	
KIAA0406	9675	broad.mit.edu	37	20	36641193	36641193	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:36641193A>G	uc002xhl.2	-	3	1235	c.1026T>C	c.(1024-1026)GAT>GAC	p.D342D	KIAA0406_uc002xhm.2_Silent_p.D342D	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	342							binding				0		Myeloproliferative disorder(115;0.00874)				CAGGACTCTCATCATTTACTA	0.458													25	143					0	0	1	0	0	
DHX35	60625	broad.mit.edu	37	20	37634810	37634810	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:37634810G>A	uc002xjh.2	+	12	1044	c.1033G>A	c.(1033-1035)GCA>ACA	p.A345T	DHX35_uc010zwa.1_Missense_Mutation_p.A190T|DHX35_uc010zwb.1_Missense_Mutation_p.A190T|DHX35_uc010zwc.1_Missense_Mutation_p.A314T	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	345	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CACCAATGTGGCAGAAACCTC	0.408													107	515					0	0	1	0	0	
ZHX3	23051	broad.mit.edu	37	20	39831389	39831389	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:39831389C>T	uc002xjs.1	-	3	2546	c.2168G>A	c.(2167-2169)AGC>AAC	p.S723N	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Missense_Mutation_p.S723N|ZHX3_uc002xjt.1_Missense_Mutation_p.S723N|ZHX3_uc002xju.1_Missense_Mutation_p.S723N|ZHX3_uc002xjv.1_Missense_Mutation_p.S723N|ZHX3_uc002xjw.1_Missense_Mutation_p.S723N|ZHX3_uc010ggg.1_Missense_Mutation_p.S723N	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	723					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				TTTAATGGGGCTGACTTTGCG	0.532													20	95					0	0	1	0	0	
LPIN3	64900	broad.mit.edu	37	20	39980542	39980542	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:39980542C>T	uc002xjx.2	+	8	1275	c.1184C>T	c.(1183-1185)GCG>GTG	p.A395V	LPIN3_uc010ggh.2_Missense_Mutation_p.A396V|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	395					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GAGAATGCAGCGCTTTACTTC	0.597													21	80					0	0	1	0	0	
EMILIN3	90187	broad.mit.edu	37	20	39989982	39989982	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:39989982C>G	uc002xjy.1	-	4	2451	c.2227G>C	c.(2227-2229)GCC>CCC	p.A743P		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	743	Potential.					proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				CGGAGGCGGGCAATGTCCTGC	0.657													6	45					0	0	1	0	0	
JPH2	57158	broad.mit.edu	37	20	42789012	42789012	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:42789012G>T	uc002xli.1	-	2	1288	c.415C>A	c.(415-417)CAT>AAT	p.H139N		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	139	Gly-rich.|Cytoplasmic (Potential).|MORN 6.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCGTAGCCATGGCGCATGCCG	0.701													4	18					0.0215528	0.0217361	1	1	0	
GDAP1L1	78997	broad.mit.edu	37	20	42907672	42907672	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:42907672G>A	uc002xlq.2	+	6	903	c.836G>A	c.(835-837)CGC>CAC	p.R279H	GDAP1L1_uc010zwl.1_Missense_Mutation_p.R298H|GDAP1L1_uc010zwm.1_Missense_Mutation_p.R221H|GDAP1L1_uc010zwn.1_Missense_Mutation_p.R87H	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	279	GST C-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			ACCCTGCACCGCCTCAAGTTC	0.587													30	121					0	0	1	0	0	
RIMS4	140730	broad.mit.edu	37	20	43386791	43386791	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:43386791C>T	uc002xms.2	-	3	271	c.271G>A	c.(271-273)GCC>ACC	p.A91T	RIMS4_uc010ggu.2_Missense_Mutation_p.A92T	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	91					exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				CTGAACTGGGCGTCCGACGCC	0.572													12	58					0	0	1	0	0	
SEMG2	6407	broad.mit.edu	37	20	43850595	43850595	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:43850595A>C	uc010ggz.2	+	2	379	c.322A>C	c.(322-324)AAT>CAT	p.N108H	SEMG2_uc002xnk.2_Missense_Mutation_p.N108H|SEMG2_uc002xnl.2_Missense_Mutation_p.N108H	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	108	Repeat-rich region.|3-1.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ACAACTGCTCAATTATAAACA	0.383													40	85					0	0	1	0	0	
SEMG2	6407	broad.mit.edu	37	20	43850598	43850598	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:43850598T>A	uc010ggz.2	+	2	382	c.325T>A	c.(325-327)TAT>AAT	p.Y109N	SEMG2_uc002xnk.2_Missense_Mutation_p.Y109N|SEMG2_uc002xnl.2_Missense_Mutation_p.Y109N	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	109	Repeat-rich region.|3-1.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ACTGCTCAATTATAAACAAGA	0.388													40	82					0	0	1	0	0	
SDC4	6385	broad.mit.edu	37	20	43964515	43964515	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:43964515G>A	uc002xnu.2	-	2	146	c.106C>T	c.(106-108)CGA>TGA	p.R36*	SDC4_uc010zws.1_Intron	NM_002999	NP_002990	P31431	SDC4_HUMAN	syndecan 4 precursor	36	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytoskeletal protein binding|thrombospondin receptor activity				0		Myeloproliferative disorder(115;0.0122)				GAGAAGTATCGGCCTTCTAGG	0.552													12	52					0	0	1	0	0	
PCIF1	63935	broad.mit.edu	37	20	44569201	44569201	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:44569201C>T	uc002xqs.2	+	5	651	c.337C>T	c.(337-339)CGG>TGG	p.R113W		NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	113	Nuclear localization signal (Potential).					nucleus				skin(1)	1						GCCCAGAAAGCGGCAGCTCTC	0.642													9	15					0	0	1	0	0	
SPATA2	9825	broad.mit.edu	37	20	48522841	48522841	+	Missense_Mutation	SNP	C	T	T	rs143910300	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:48522841C>T	uc010gie.2	-	3	1228	c.878G>A	c.(877-879)CGC>CAC	p.R293H	SPATA2_uc002xuw.2_Missense_Mutation_p.R293H|SPATA2_uc010zyn.1_Missense_Mutation_p.R156H	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	293					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			AGGGGATGGGCGGATGATCTC	0.667													22	124					0	0	1	0	0	
PCK1	5105	broad.mit.edu	37	20	56137185	56137185	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:56137185G>A	uc002xyn.3	+	3	446	c.283G>A	c.(283-285)GTC>ATC	p.V95I	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	95					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GACGGTTATCGTCACCCAAGA	0.552													11	47					0	0	1	0	0	
SLMO2	51012	broad.mit.edu	37	20	57610086	57610086	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:57610086T>C	uc002yam.2	-	6	677	c.561A>G	c.(559-561)GCA>GCG	p.A187A	ATP5E_uc002yal.2_5'Flank|SLMO2_uc010zzv.1_Silent_p.A157A	NM_016045	NP_057129	Q9Y3B1	SLMO2_HUMAN	slowmo homolog 2	187										skin(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)			ACGCTGCTGCTGCCATTGGAG	0.408													4	48					0	0	1	0	0	
EDN3	1908	broad.mit.edu	37	20	57876698	57876698	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:57876698C>T	uc002yap.2	+	2	655	c.286C>T	c.(286-288)CGC>TGC	p.R96C	EDN3_uc002yao.1_Missense_Mutation_p.R96C|EDN3_uc002yaq.2_Missense_Mutation_p.R96C|EDN3_uc002yar.2_Missense_Mutation_p.R96C|EDN3_uc002yas.2_Missense_Mutation_p.R96C	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	96					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					CCGATCCAGGCGCTGCACGTG	0.617													70	106					0	0	1	0	0	
LAMA5	3911	broad.mit.edu	37	20	60887584	60887584	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:60887584G>A	uc002ycq.2	-	68	9299	c.9232C>T	c.(9232-9234)CGA>TGA	p.R3078*		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3078	Laminin G-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAGAGCCGTCGCAGGCTGTGG	0.677													20	22					0	0	1	0	0	
YTHDF1	54915	broad.mit.edu	37	20	61833646	61833646	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:61833646A>G	uc002yeh.2	-	4	1940	c.1646T>C	c.(1645-1647)GTG>GCG	p.V549A	YTHDF1_uc011aaq.1_Missense_Mutation_p.V499A	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	549										ovary(2)	2						CACCTTGCGCACCACCTCCTC	0.567													27	136					0	0	1	0	0	
PRIC285	85441	broad.mit.edu	37	20	62197486	62197486	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:62197486C>T	uc002yfm.2	-	9	3581	c.2689G>A	c.(2689-2691)GTG>ATG	p.V897M	PRIC285_uc002yfl.1_Missense_Mutation_p.V328M	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	897					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GTGTTGAGCACGCGGGCGTCG	0.697													4	12					0	0	1	0	0	
MIR941-3	100126352	broad.mit.edu	37	20	62551266	62551266	+	RNA	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:62551266G>A	hsa-mir-941-3|MI0005765	+			c.54G>A			DNAJC5_uc002yhf.2_Intron|DNAJC5_uc002yhg.1_Intron|DNAJC5_uc002yhh.2_RNA																	0						GGAAGAGGACGCACCCGGCTG	0.706													18	14					0	0	1	0	0	
OPRL1	4987	broad.mit.edu	37	20	62730147	62730147	+	Missense_Mutation	SNP	G	A	A	rs113199372		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:62730147G>A	uc002yic.2	+	5	1510	c.1108G>A	c.(1108-1110)GCA>ACA	p.A370T	OPRL1_uc002yid.2_Missense_Mutation_p.A370T|OPRL1_uc002yif.3_Missense_Mutation_p.A365T	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	370	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					ACCGCGGCCCGCATGACTAGG	0.657													13	36					0	0	1	0	0	
BACH1	571	broad.mit.edu	37	21	30715090	30715090	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:30715090G>A	uc002ynj.2	+	5	2262	c.2147G>A	c.(2146-2148)CGT>CAT	p.R716H	BACH1_uc002ynk.2_Missense_Mutation_p.R716H|BACH1_uc002ynl.2_Intron	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	716						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						GAACAGTGTCGTCAGAGTGGT	0.507													13	38					0	0	1	0	0	
TIAM1	7074	broad.mit.edu	37	21	32559328	32559328	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:32559328G>T	uc002yow.1	-	15	3123	c.2651C>A	c.(2650-2652)GCT>GAT	p.A884D	TIAM1_uc011adk.1_Missense_Mutation_p.A884D|TIAM1_uc011adl.1_Missense_Mutation_p.A824D	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	884	PDZ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TTTCTTGGAAGCTAAACCGGT	0.433													49	180					2.47907e-22	2.73543e-22	1	1	0	
SFRS15	57466	broad.mit.edu	37	21	33103990	33103990	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:33103990C>T	uc002ypd.2	-	1	442	c.16G>A	c.(16-18)GCC>ACC	p.A6T	SFRS15_uc002ype.2_Missense_Mutation_p.A6T|SFRS15_uc010glu.2_Missense_Mutation_p.A6T|SFRS15_uc002ypg.2_Missense_Mutation_p.A6T	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	6	CID.					nucleus	nucleotide binding|RNA binding				0						TGGTTGAAGGCGTTGACGGCG	0.716													11	70					0	0	1	0	0	
DOPEY2	9980	broad.mit.edu	37	21	37617999	37617999	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:37617999C>T	uc002yvg.2	+	19	3800	c.3721C>T	c.(3721-3723)CTC>TTC	p.L1241F	DOPEY2_uc011aeb.1_Missense_Mutation_p.L1190F|DOPEY2_uc002yvh.2_Missense_Mutation_p.L92F	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1241					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TCGGCGGGTCCTCTATGCCTT	0.587													17	32					0	0	1	0	0	
MORC3	23515	broad.mit.edu	37	21	37747468	37747468	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:37747468C>T	uc002yvi.2	+	17	2770	c.2694C>T	c.(2692-2694)AAC>AAT	p.N898N		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	898					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						TTCGAGTTAACGTAGGACAAC	0.358													17	89					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	42080531	42080531	+	Silent	SNP	G	A	A	rs147347671	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:42080531G>A	uc002yyq.1	-	2	662	c.210C>T	c.(208-210)CCC>CCT	p.P70P	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	70	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGCGGATCCCGGGGACATCGT	0.567													21	90					0	0	1	0	0	
PRDM15	63977	broad.mit.edu	37	21	43242266	43242266	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:43242266C>T	uc002yzq.1	-	22	3098	c.2987G>A	c.(2986-2988)CGG>CAG	p.R996Q	PRDM15_uc002yzo.2_Missense_Mutation_p.R667Q|PRDM15_uc002yzp.2_Missense_Mutation_p.R687Q|PRDM15_uc002yzr.1_Missense_Mutation_p.R687Q	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	996	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACCTGGCACCGCTTGCAGCT	0.587													10	65					0	0	1	0	0	
ITGB2	3689	broad.mit.edu	37	21	46321619	46321619	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:46321619G>A	uc002zgd.2	-	5	573	c.529C>T	c.(529-531)CTG>TTG	p.L177L	ITGB2_uc002zge.2_Silent_p.L177L|ITGB2_uc002zgf.3_Silent_p.L177L|ITGB2_uc011afl.1_Silent_p.L99L|ITGB2_uc010gpw.2_Silent_p.L120L|ITGB2_uc002zgg.2_Silent_p.L177L	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	177	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	ACGAACGGCAGCACGGTCTTG	0.637													15	47					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47851682	47851682	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr21:47851682C>T	uc002zji.3	+	38	8411	c.8304C>T	c.(8302-8304)ACC>ACT	p.T2768T	PCNT_uc002zjj.2_Silent_p.T2650T	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	2768	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GGCTCCTGACCGAGCAGCTGA	0.647													6	24					0	0	1	0	0	
CYTSA	23384	broad.mit.edu	37	22	24717327	24717327	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:24717327C>T	uc002zzw.2	+	5	686	c.379C>T	c.(379-381)CGT>TGT	p.R127C	CYTSA_uc002zzv.3_Missense_Mutation_p.R127C|CYTSA_uc011ajq.1_Missense_Mutation_p.R127C	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	127					cell cycle|cell division						0						AGAAAGATTACGTGAACGTAC	0.438													44	108					0	0	1	0	0	
LRP5L	91355	broad.mit.edu	37	22	25747816	25747816	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:25747816G>A	uc003abs.2	-	4	3174	c.709C>T	c.(709-711)CGC>TGC	p.R237C	LRP5L_uc011ajz.1_Missense_Mutation_p.R237C|LRP5L_uc010guw.1_Intron	NM_182492	NP_872298	A4QPB2	LRP5L_HUMAN	low density lipoprotein receptor-related protein	237											0						TGTGTGGGGCGTGAAGAAGCA	0.572													13	82					0	0	1	0	0	
SFI1	9814	broad.mit.edu	37	22	32011260	32011260	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:32011260G>T	uc003ale.2	+	29	3688	c.3295G>T	c.(3295-3297)GCC>TCC	p.A1099S	SFI1_uc003alf.2_Missense_Mutation_p.A1068S|SFI1_uc003alg.2_Missense_Mutation_p.A1017S|SFI1_uc011alp.1_Missense_Mutation_p.A1005S|SFI1_uc011alq.1_Missense_Mutation_p.A1044S|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_Missense_Mutation_p.A191S|SFI1_uc003alj.2_Missense_Mutation_p.A233S	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	1099					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						GGCTGCACCAGCCAGGGTACG	0.642													6	22					3.59834e-05	3.72398e-05	1	1	0	
RASD2	23551	broad.mit.edu	37	22	35947942	35947942	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:35947942G>A	uc003anx.2	+	3	869	c.664G>A	c.(664-666)GTC>ATC	p.V222I	RASD2_uc003any.2_Missense_Mutation_p.V222I	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	222	Interaction with GNB1, GNB2 and GNB3.				locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						CATGCGCCGCGTCAAGGAGAT	0.637													20	52					0	0	1	0	0	
GGA1	26088	broad.mit.edu	37	22	38027048	38027048	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:38027048C>T	uc003atc.2	+	14	1835	c.1470C>T	c.(1468-1470)CCC>CCT	p.P490P	GGA1_uc003atd.2_Silent_p.P403P|GGA1_uc003ate.2_Silent_p.P486P|GGA1_uc003atf.2_Silent_p.P417P	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	490	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					CGCAGCAGCCCGTACCAACCG	0.622													32	104					0	0	1	0	0	
TMEM184B	25829	broad.mit.edu	37	22	38621523	38621523	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:38621523A>G	uc003avf.1	-	7	919	c.695T>C	c.(694-696)TTC>TCC	p.F232S	TMEM184B_uc003avg.1_Missense_Mutation_p.F232S|TMEM184B_uc003avh.1_Missense_Mutation_p.F166S|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	232	Helical; (Potential).					integral to membrane					0	Melanoma(58;0.045)					GGCGAAGTAGAAGAGGAAGAG	0.577													20	40					0	0	1	0	0	
KCNJ4	3761	broad.mit.edu	37	22	38823526	38823526	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:38823526C>T	uc003avs.1	-	2	709	c.612G>A	c.(610-612)TGG>TGA	p.W204*	KCNJ4_uc003avt.1_Nonsense_Mutation_p.W204*	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	204	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					TGCCCACGCGCCACATGAGGC	0.657													15	59					0	0	1	0	0	
APOBEC3G	60489	broad.mit.edu	37	22	39477208	39477208	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:39477208A>G	uc003awx.2	+	3	784	c.442A>G	c.(442-444)ACC>GCC	p.T148A	APOBEC3G_uc003awy.2_Missense_Mutation_p.T81A	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	148					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					TCCGCGTGCCACCATGAAGAT	0.537													23	70					0	0	1	0	0	
ADSL	158	broad.mit.edu	37	22	40762510	40762510	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:40762510C>T	uc003ayp.3	+	13	1498	c.1439C>T	c.(1438-1440)GCA>GTA	p.A480V	ADSL_uc003ays.3_Missense_Mutation_p.A421V|ADSL_uc003ayq.3_Missense_Mutation_p.A494V|ADSL_uc003ayr.3_Missense_Mutation_p.A256V|ADSL_uc003ayt.3_Missense_Mutation_p.A465V	NM_000026	NP_000017	P30566	PUR8_HUMAN	adenylosuccinate lyase isoform a	480					AMP biosynthetic process|protein tetramerization|purine base metabolic process	cytosol	(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity|N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity			ovary(1)	1						AAGGTGAAAGCAGAATTATGT	0.373													11	47					0	0	1	0	0	
ACO2	50	broad.mit.edu	37	22	41904043	41904043	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:41904043G>A	uc003bac.2	+	3	444	c.422G>A	c.(421-423)CGC>CAC	p.R141H	ACO2_uc003bad.2_Missense_Mutation_p.R141H	NM_001098	NP_001089	Q99798	ACON_HUMAN	aconitase 2, mitochondrial precursor	141					citrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron ion binding|isocitrate hydro-lyase (cis-aconitate-forming) activity			breast(2)|ovary(1)|lung(1)	4						AAAGACCTGCGCCGGGCCAAG	0.617													16	71					0	0	1	0	0	
TTLL1	25809	broad.mit.edu	37	22	43460205	43460205	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:43460205C>T	uc003bdi.2	-	6	870	c.629G>A	c.(628-630)CGC>CAC	p.R210H	TTLL1_uc010gzh.2_Missense_Mutation_p.R210H|TTLL1_uc003bdj.2_Missense_Mutation_p.R96H|TTLL1_uc003bdh.2_Missense_Mutation_p.R172H	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	210	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		CATGTAACAGCGCAGTGGACG	0.463													9	87					0	0	1	0	0	
SMC1B	27127	broad.mit.edu	37	22	45802421	45802421	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:45802421C>T	uc003bgc.2	-	4	587	c.535G>A	c.(535-537)GAA>AAA	p.E179K	SMC1B_uc003bgd.2_Missense_Mutation_p.E179K|SMC1B_uc003bge.1_5'UTR	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	179	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GCATCCTCTTCGGCTTTTTGT	0.368													13	41					0	0	1	0	0	
ATXN10	25814	broad.mit.edu	37	22	46134638	46134638	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:46134638G>A	uc003bgm.1	+	8	1179	c.922G>A	c.(922-924)GAC>AAC	p.D308N	ATXN10_uc011aqt.1_Missense_Mutation_p.D244N|ATXN10_uc003bgn.1_Missense_Mutation_p.D119N	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	308					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		TAGGCTTCTCGACGTCCTGTG	0.383													18	73					0	0	1	0	0	
PKDREJ	10343	broad.mit.edu	37	22	46652994	46652994	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:46652994G>A	uc003bhh.2	-	1	6226	c.6226C>T	c.(6226-6228)CGC>TGC	p.R2076C		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2076	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGAGCCAGGCGCACATCGTAG	0.458													15	63					0	0	1	0	0	
PKDREJ	10343	broad.mit.edu	37	22	46658610	46658610	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:46658610C>T	uc003bhh.2	-	1	610	c.610G>A	c.(610-612)GTC>ATC	p.V204I		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	204	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GACGACTCGACGGCTCTGTGG	0.637													3	27					0	0	1	0	0	
ZBED4	9889	broad.mit.edu	37	22	50277799	50277799	+	Silent	SNP	C	T	T	rs148606148		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:50277799C>T	uc003bix.2	+	2	959	c.489C>T	c.(487-489)CGC>CGT	p.R163R		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	163	BED-type 1.					cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		ACGTGAGGCGCGCACACCCGA	0.552													16	47					0	0	1	0	0	
TTLL8	164714	broad.mit.edu	37	22	50470379	50470379	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:50470379C>T	uc011ark.1	-	11	1443	c.1443G>A	c.(1441-1443)CCG>CCA	p.P481P		NM_001080447	NP_001073916			tubulin tyrosine ligase-like family, member 8											ovary(2)	2		all_cancers(38;3.44e-07)|all_epithelial(38;2.44e-06)|all_lung(38;0.00141)|Breast(42;0.00519)|Lung NSC(38;0.0199)|Ovarian(80;0.142)|Lung SC(80;0.162)		READ - Rectum adenocarcinoma(2;0.000882)|Colorectal(2;0.00311)|BRCA - Breast invasive adenocarcinoma(115;0.226)		TCTTCATGGACGGGTAGATGA	0.647													13	29					0	0	1	0	0	
PANX2	56666	broad.mit.edu	37	22	50616018	50616018	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:50616018G>A	uc003bjn.3	+	2	877	c.877G>A	c.(877-879)GTG>ATG	p.V293M	PANX2_uc003bjp.3_Missense_Mutation_p.V159M|PANX2_uc003bjo.3_Missense_Mutation_p.V293M	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	293	Helical; (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		CATCGCGGGCGTGGACATCGT	0.647													21	63					0	0	1	0	0	
PLXNB2	23654	broad.mit.edu	37	22	50728320	50728320	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:50728320A>C	uc003bkv.3	-	3	800	c.694T>G	c.(694-696)TTC>GTC	p.F232V		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	232	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGCTGGTTGAAGACAAAGAAG	0.612													14	32					0	0	1	0	0	
ITPR1	3708	broad.mit.edu	37	3	4669509	4669509	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:4669509G>A	uc003bqa.2	+	5	574	c.226G>A	c.(226-228)GCT>ACT	p.A76T	ITPR1_uc010hbz.2_Missense_Mutation_p.A76T|ITPR1_uc010hca.1_Missense_Mutation_p.A76T|ITPR1_uc011asu.1_Missense_Mutation_p.A76T|ITPR1_uc010hcb.1_Missense_Mutation_p.A76T	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	76	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTGGAAAGCCGCTAAGCCTGG	0.522													28	116					0	0	1	0	0	
ITPR1	3708	broad.mit.edu	37	3	4810245	4810245	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:4810245G>A	uc003bqa.2	+	43	5980	c.5632G>A	c.(5632-5634)GAG>AAG	p.E1878K	ITPR1_uc010hca.1_Missense_Mutation_p.E1863K|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.E848K	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1926	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TCAGCTCCTGGAGGCCTCCGC	0.587													10	39					0	0	1	0	0	
SETD5	55209	broad.mit.edu	37	3	9488801	9488801	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:9488801G>A	uc003brt.2	+	14	2027	c.1592G>A	c.(1591-1593)CGG>CAG	p.R531Q	SETD5_uc003brs.1_Missense_Mutation_p.R512Q|SETD5_uc003bru.2_Missense_Mutation_p.R433Q|SETD5_uc003brv.2_Missense_Mutation_p.R420Q|SETD5_uc010hck.2_Missense_Mutation_p.R13Q|SETD5_uc003brx.2_Missense_Mutation_p.R200Q	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	531										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGAAAGAAGCGGCGGGATCAG	0.448													19	46					0	0	1	0	0	
BRPF1	7862	broad.mit.edu	37	3	9780731	9780731	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:9780731C>T	uc003bse.2	+	3	1047	c.648C>T	c.(646-648)GAC>GAT	p.D216D	BRPF1_uc003bsf.2_Silent_p.D216D|BRPF1_uc003bsg.2_Silent_p.D216D|BRPF1_uc011ati.1_Silent_p.D216D	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	216	Interaction with MYST3 and MYST4.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					TAGAGTATGACATGGACGAGG	0.502													11	33					0	0	1	0	0	
ATP2B2	491	broad.mit.edu	37	3	10370624	10370624	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:10370624C>T	uc003bvt.2	-	23	4045	c.3606G>A	c.(3604-3606)CCG>CCA	p.P1202P	ATP2B2_uc003bvv.2_Silent_p.P1157P|ATP2B2_uc003bvw.2_Silent_p.P1157P|ATP2B2_uc003bvs.2_RNA|ATP2B2_uc010hdo.2_Silent_p.P907P|hsa-mir-378b|MI0014154_5'Flank	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	1202	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGATGACGGCGGGCTCGAGT	0.562													24	71					0	0	1	0	0	
SLC6A1	6529	broad.mit.edu	37	3	11070970	11070970	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:11070970C>T	uc010hdq.2	+	12	1666	c.1255C>T	c.(1255-1257)CGC>TGC	p.R419C		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	419					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCTCCGCAACCGCAGAGAGCT	0.572													6	33					0	0	1	0	0	
FBLN2	2199	broad.mit.edu	37	3	13613154	13613154	+	Silent	SNP	C	T	T	rs111711686		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:13613154C>T	uc011avb.1	+	2	1424	c.1299C>T	c.(1297-1299)AGC>AGT	p.S433S	FBLN2_uc011auz.1_Silent_p.S459S|FBLN2_uc011ava.1_Silent_p.S433S|FBLN2_uc011avc.1_Silent_p.S433S	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	433	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCAGAAGTAGCCCTGAAGGTA	0.622													7	8					0	0	1	0	0	
FGD5	152273	broad.mit.edu	37	3	14861613	14861613	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:14861613C>T	uc003bzc.2	+	1	1145	c.1035C>T	c.(1033-1035)AGC>AGT	p.S345S	FGD5_uc011avk.1_Silent_p.S345S	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	345					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						TCACAGGAAGCCCCTATGAGT	0.517													28	89					0	0	1	0	0	
CLASP2	23122	broad.mit.edu	37	3	33626368	33626368	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:33626368C>T	uc003cfu.2	-	22	2467	c.2113G>A	c.(2113-2115)GCC>ACC	p.A705T	CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Missense_Mutation_p.A298T	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	706										ovary(3)|central_nervous_system(1)	4						GTGGACAGGGCTGTTGTGGTC	0.483													25	63					0	0	1	0	0	
TRANK1	9881	broad.mit.edu	37	3	36874817	36874817	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:36874817C>A	uc003cgj.2	-	12	4777	c.4475G>T	c.(4474-4476)GGG>GTG	p.G1492V		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2042					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTCCAAGCCCCCTGGAGCCAG	0.522													10	34					1.58986e-06	1.65663e-06	1	1	0	
CCDC13	152206	broad.mit.edu	37	3	42751226	42751226	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:42751226G>T	uc003cly.3	-	15	2022	c.1938C>A	c.(1936-1938)GCC>GCA	p.A646A		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	646										ovary(1)	1						CGGAGAGCTGGGCAAAGGATG	0.597													31	129					2.08457e-15	2.26731e-15	1	1	0	
ZNF197	10168	broad.mit.edu	37	3	44684230	44684230	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:44684230A>C	uc003cnm.2	+	6	1814	c.1608A>C	c.(1606-1608)AAA>AAC	p.K536N	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	536					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		CTGGGGAAAAACCCTATAAAT	0.418													30	96					0	0	1	0	0	
PRSS50	29122	broad.mit.edu	37	3	46754425	46754425	+	Missense_Mutation	SNP	C	T	T	rs143437619	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:46754425C>T	uc003cqe.1	-	5	946	c.887G>A	c.(886-888)TGT>TAT	p.C296Y	PRSS50_uc003cqf.1_Missense_Mutation_p.C210Y	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	296	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						GTCCTCCGCACACATCATCTG	0.498													43	143					0	0	1	0	0	
PTPN23	25930	broad.mit.edu	37	3	47452631	47452631	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:47452631G>A	uc003crf.1	+	20	3439	c.3343G>A	c.(3343-3345)GCA>ACA	p.A1115T	PTPN23_uc011baw.1_Missense_Mutation_p.A1080T|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.A985T|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1115	His.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CCGAGGCGCCGCAGCTGCAGA	0.711													3	9					0	0	1	0	0	
BSN	8927	broad.mit.edu	37	3	49688124	49688124	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:49688124C>T	uc003cxe.3	+	4	1712	c.1598C>T	c.(1597-1599)CCG>CTG	p.P533L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	533					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCCCTGCCGCCGCCCACCTCA	0.642													52	127					0	0	1	0	0	
IP6K1	9807	broad.mit.edu	37	3	49764604	49764604	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:49764604A>G	uc003cxm.1	-	6	1592	c.1277T>C	c.(1276-1278)CTG>CCG	p.L426P	IP6K1_uc003cxn.1_Missense_Mutation_p.L261P|IP6K1_uc011bcv.1_Missense_Mutation_p.L261P|IP6K1_uc003cxo.2_3'UTR	NM_153273	NP_695005	Q92551	IP6K1_HUMAN	inositol hexakisphosphate kinase 1 isoform 1	426					phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						GAGGTTCTCCAGGCCAAACAC	0.587													20	55					0	0	1	0	0	
C3orf54	389119	broad.mit.edu	37	3	49842206	49842206	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:49842206G>A	uc003cxq.1	+	2	783	c.650G>A	c.(649-651)CGT>CAT	p.R217H		NM_203370	NP_976248	Q96EL1	CC054_HUMAN	hypothetical protein LOC389119	215											0				BRCA - Breast invasive adenocarcinoma(193;3.55e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GGTGGGCACCGTGCCCGTGCT	0.652													46	120					0	0	1	0	0	
RAD54L2	23132	broad.mit.edu	37	3	51675812	51675812	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:51675812G>A	uc011bdt.1	+	14	2404	c.2279G>A	c.(2278-2280)CGA>CAA	p.R760Q	RAD54L2_uc003dbh.2_Missense_Mutation_p.R351Q|RAD54L2_uc011bdu.1_Missense_Mutation_p.R454Q|RAD54L2_uc003dbj.2_Missense_Mutation_p.R86Q	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	760	Helicase C-terminal.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CTTGGAAAACGAGAAGTACCC	0.483													4	11					0	0	1	0	0	
TLR9	54106	broad.mit.edu	37	3	52255795	52255795	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:52255795C>T	uc003dda.1	-	2	3171	c.2537G>A	c.(2536-2538)TGC>TAC	p.C846Y	TLR9_uc003ddb.2_Missense_Mutation_p.C943Y	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	846	Cytoplasmic (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CAGGTGGAAGCAGTACCAGAG	0.647													25	64					0	0	1	0	0	
STAB1	23166	broad.mit.edu	37	3	52552802	52552802	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:52552802C>T	uc003dej.2	+	48	5025	c.4951C>T	c.(4951-4953)CGG>TGG	p.R1651W	STAB1_uc003dek.1_5'UTR|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1651	Extracellular (Potential).|FAS1 5.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGTTGGCTGTCGGCGGCTGCG	0.657													15	30					0	0	1	0	0	
IL17RD	54756	broad.mit.edu	37	3	57135251	57135251	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:57135251C>T	uc003dil.2	-	11	1209	c.1120G>A	c.(1120-1122)GTC>ATC	p.V374I	IL17RD_uc003dik.2_Missense_Mutation_p.V350I|IL17RD_uc010hna.2_Missense_Mutation_p.V230I|IL17RD_uc011bex.1_Missense_Mutation_p.V230I	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	374	SEFIR.|Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		AAACACTGGACGACATTCATG	0.537													11	24					0	0	1	0	0	
CRYBG3	131544	broad.mit.edu	37	3	97595964	97595964	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:97595964G>A	uc003drx.2	+	1	146	c.82G>A	c.(82-84)GAG>AAG	p.E28K		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						CAAGAGGAGAGAGACAGATTA	0.388													18	43					0	0	1	0	0	
PLCXD2	257068	broad.mit.edu	37	3	111432785	111432785	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:111432785C>T	uc003dya.2	+	3	1262	c.676C>T	c.(676-678)CCA>TCA	p.P226S	PLCXD2_uc003dyb.2_Missense_Mutation_p.P226S|PLCXD2_uc003dxz.2_Missense_Mutation_p.P226S	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	226					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						CTTCCTGTGGCCAGGAAAGAA	0.483													6	72					0	0	1	0	0	
BOC	91653	broad.mit.edu	37	3	112998694	112998694	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:112998694C>T	uc003dzx.2	+	13	2665	c.2044C>T	c.(2044-2046)CGG>TGG	p.R682W	BOC_uc003dzy.2_Missense_Mutation_p.R682W|BOC_uc003dzz.2_Missense_Mutation_p.R683W|BOC_uc003eab.2_Missense_Mutation_p.R383W|BOC_uc003eac.2_5'UTR	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	682	Fibronectin type-III 2.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			GTTTCGAGTCCGGGCTCTGAA	0.627													30	120					0	0	1	0	0	
POPDC2	64091	broad.mit.edu	37	3	119379220	119379220	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:119379220C>T	uc003ecx.1	-	1	185	c.51G>A	c.(49-51)GCG>GCA	p.A17A	POPDC2_uc010hqw.1_Silent_p.A17A|POPDC2_uc003ecy.1_Intron	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	17						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		ACCTAATGCACGCTGAACCCT	0.567													13	45					0	0	1	0	0	
NR1I2	8856	broad.mit.edu	37	3	119526207	119526207	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:119526207G>A	uc003edj.2	+	2	1949	c.110G>A	c.(109-111)GGT>GAT	p.G37D	NR1I2_uc003edi.2_Missense_Mutation_p.G37D|NR1I2_uc003edk.2_Missense_Mutation_p.G76D	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	37					drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	GAAGTCGGAGGTCCCCAAATC	0.502													23	75					0	0	1	0	0	
SLC15A2	6565	broad.mit.edu	37	3	121658339	121658339	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:121658339T>C	uc003eep.2	+	20	2058	c.1905T>C	c.(1903-1905)TCT>TCC	p.S635S	SLC15A2_uc011bjn.1_Silent_p.S604S	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	635					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTTCTTATTCTCAGGTAAGTT	0.398													5	105					0	0	1	0	0	
UMPS	7372	broad.mit.edu	37	3	124462820	124462820	+	Silent	SNP	C	T	T	rs112541424	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:124462820C>T	uc003ehl.3	+	6	1438	c.1332C>T	c.(1330-1332)TCC>TCT	p.S444S	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Silent_p.S266S|UMPS_uc011bkb.1_Silent_p.S352S|UMPS_uc011bkc.1_Silent_p.S266S|UMPS_uc003ehn.3_Silent_p.S266S|UMPS_uc011bkd.1_Silent_p.S169S	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	444	OMPdecase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		AACGAGGTTCCGATATCATCA	0.413													26	51					0	0	1	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126735442	126735442	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:126735442G>A	uc003ejg.2	+	15	3032	c.3028G>A	c.(3028-3030)GCC>ACC	p.A1010T		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1033	IPT/TIG 2.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CATCAACCGCGCCCAGCTCAC	0.637													29	68					0	0	1	0	0	
IFT122	55764	broad.mit.edu	37	3	129202444	129202444	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:129202444G>A	uc003emm.2	+	15	1976	c.1770G>A	c.(1768-1770)CTG>CTA	p.L590L	IFT122_uc003eml.2_Silent_p.L641L|IFT122_uc003emn.2_Silent_p.L531L|IFT122_uc003emo.2_Silent_p.L479L|IFT122_uc003emp.2_Silent_p.L440L|IFT122_uc010htc.2_Silent_p.L582L|IFT122_uc011bky.1_Silent_p.L381L|IFT122_uc003emq.2_Silent_p.L430L|IFT122_uc003emr.2_Silent_p.L381L|IFT122_uc011bla.1_Silent_p.L381L|IFT122_uc011bkx.1_Silent_p.L430L|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Silent_p.L69L	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	590					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						GGCAGAAGCTGCAGGGCTTTG	0.577													8	28					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130285684	130285684	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:130285684G>A	uc010htl.2	+	4	1452	c.1421G>A	c.(1420-1422)CGG>CAG	p.R474Q		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	474	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CATAAGGTGCGGGTTGGGGCC	0.493													31	113					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130368359	130368359	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:130368359G>A	uc010htl.2	+	32	5717	c.5686G>A	c.(5686-5688)GTG>ATG	p.V1896M	COL6A6_uc003eni.3_Intron	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1896	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AATCATTCCCGTGGTGATCAC	0.522													3	9					0	0	1	0	0	
EPHB1	2047	broad.mit.edu	37	3	134967327	134967327	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:134967327A>C	uc003eqt.2	+	14	2886	c.2666A>C	c.(2665-2667)AAG>ACG	p.K889T	EPHB1_uc003equ.2_Missense_Mutation_p.K450T	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	889	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GCAAGTCTCAAGACTGTGGCA	0.552													4	13					0	0	1	0	0	
PRR23A	729627	broad.mit.edu	37	3	138724463	138724463	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:138724463G>A	uc011bms.1	-	1	648	c.648C>T	c.(646-648)TTC>TTT	p.F216F		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	216	Pro-rich.										0						ATTCCGGGTCGAAGAAGGGGC	0.662													8	15					0	0	1	0	0	
PRR23B	389151	broad.mit.edu	37	3	138739117	138739117	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:138739117G>A	uc003esy.1	-	1	652	c.387C>T	c.(385-387)GGC>GGT	p.G129G		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	129										breast(1)	1						CCCTGACAGCGCCCAGGAAAA	0.647													22	57					0	0	1	0	0	
PAQR9	344838	broad.mit.edu	37	3	142681852	142681852	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:142681852G>A	uc003evg.2	-	1	327	c.327C>T	c.(325-327)GGC>GGT	p.G109G	PAQR9_uc003evf.1_5'Flank	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	109	Extracellular (Potential).					integral to membrane	receptor activity				0						GCACGTCGCCGCCGCTCAGGA	0.622													16	25					0	0	1	0	0	
ZIC1	7545	broad.mit.edu	37	3	147130449	147130449	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:147130449C>T	uc003ewe.2	+	2	1846	c.1127C>T	c.(1126-1128)TCG>TTG	p.S376L		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	376	C2H2-type 5.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CATCCCAGTTCGCTGCGCAAA	0.592													21	60					0	0	1	0	0	
GYG1	2992	broad.mit.edu	37	3	148741948	148741948	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:148741948C>T	uc003ewn.2	+	6	770	c.717C>T	c.(715-717)AAC>AAT	p.N239N	GYG1_uc011bnp.1_Missense_Mutation_p.T193I|GYG1_uc003ewo.2_Silent_p.N239N|GYG1_uc003ewp.2_Intron	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	239					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			ATGATCCCAACATGACTCATC	0.433													4	65					0	0	1	0	0	
SHOX2	6474	broad.mit.edu	37	3	157820483	157820483	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:157820483G>A	uc003fbr.2	-	2	678	c.539C>T	c.(538-540)TCG>TTG	p.S180L	SHOX2_uc003fbs.2_Missense_Mutation_p.S204L|SHOX2_uc010hvw.2_Missense_Mutation_p.S180L	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	180	Homeobox.				nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TCGGGCCTCCGACAGGCCCAG	0.622													24	68					0	0	1	0	0	
BCHE	590	broad.mit.edu	37	3	165547357	165547357	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:165547357C>A	uc003fem.3	-	2	1625	c.1465G>T	c.(1465-1467)GAA>TAA	p.E489*	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	489					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	CTCAAAATTTCCTCGGCTTTT	0.398													23	56					7.87624e-14	8.52328e-14	1	1	0	
BCHE	590	broad.mit.edu	37	3	165547582	165547582	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:165547582G>A	uc003fem.3	-	2	1400	c.1240C>T	c.(1240-1242)CGT>TGT	p.R414C	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	414			R -> C (in BChE deficiency).		choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	AAGGCCTCACGGTAGTTTTCA	0.403													27	58					0	0	1	0	0	
SPATA16	83893	broad.mit.edu	37	3	172834946	172834946	+	Silent	SNP	G	A	A	rs146363552		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:172834946G>A	uc003fin.3	-	2	734	c.576C>T	c.(574-576)TAC>TAT	p.Y192Y		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	192					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTGCCAAGGCGTATTTCTTTT	0.403													29	130					0	0	1	0	0	
PIK3CA	5290	broad.mit.edu	37	3	178916936	178916936	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:178916936G>A	uc003fjk.2	+	2	480	c.323G>A	c.(322-324)CGT>CAT	p.R108H		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	108	PI3K-ABD.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.R108H(5)|p.G106_R108del(2)|p.R108P(1)|p.R108del(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GTAGGCAACCGTGAAGAAAAG	0.338		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			17	57					0	0	1	0	0	
DCUN1D1	54165	broad.mit.edu	37	3	182662919	182662919	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:182662919C>T	uc003fld.1	-	7	792	c.743G>A	c.(742-744)CGC>CAC	p.R248H	DCUN1D1_uc011bqn.1_Missense_Mutation_p.R105H	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	248	DCUN1.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			AATTTGAGGGCGTGCAAATTC	0.373													19	40					0	0	1	0	0	
LAMP3	27074	broad.mit.edu	37	3	182872122	182872122	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:182872122T>C	uc003flh.3	-	2	331	c.107A>G	c.(106-108)TAT>TGT	p.Y36C		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	36	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			AGGTTGAGAATAATCTCTGGT	0.393													29	84					0	0	1	0	0	
KLHL24	54800	broad.mit.edu	37	3	183368193	183368193	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:183368193C>T	uc003flv.2	+	3	344	c.49C>T	c.(49-51)CGT>TGT	p.R17C	KLHL24_uc003flw.2_Missense_Mutation_p.R17C|KLHL24_uc003flx.2_Missense_Mutation_p.R17C	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	17						axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			TCTTGGGGTGCGTGATTCCCC	0.413													17	46					0	0	1	0	0	
MUC4	4585	broad.mit.edu	37	3	195481223	195481223	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:195481223G>A	uc011bto.1	-	20	15265	c.14805C>T	c.(14803-14805)GAC>GAT	p.D4935D	MUC4_uc010hzq.2_5'Flank|MUC4_uc003fuz.2_Silent_p.D661D|MUC4_uc003fva.2_Silent_p.D543D|MUC4_uc003fvb.2_Silent_p.D579D|MUC4_uc003fvc.2_Intron|MUC4_uc003fvd.2_Intron|MUC4_uc003fve.2_Silent_p.D579D|MUC4_uc010hzr.2_Intron|MUC4_uc011btf.1_Silent_p.D543D|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Silent_p.D627D|MUC4_uc011bti.1_Silent_p.D627D|MUC4_uc011btj.1_Silent_p.D804D|MUC4_uc011btk.1_Silent_p.D543D|MUC4_uc011btl.1_Silent_p.D572D|MUC4_uc011btm.1_Silent_p.D752D|MUC4_uc011btn.1_Silent_p.D543D|MUC4_uc003fvo.2_Silent_p.D827D|MUC4_uc003fvp.2_Silent_p.D776D	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1820					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGTGCCCCCGTCACACTTGC	0.652													13	37					0	0	1	0	0	
MFI2	4241	broad.mit.edu	37	3	196743090	196743090	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:196743090C>T	uc003fxk.3	-	8	1164	c.1051G>A	c.(1051-1053)GCC>ACC	p.A351T		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	351	Transferrin-like 1.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CCCTTCATGGCGTGCAGGTAC	0.602													17	22					0	0	1	0	0	
BDH1	622	broad.mit.edu	37	3	197239128	197239128	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:197239128A>G	uc003fxr.2	-	8	1072	c.670T>C	c.(670-672)TAT>CAT	p.Y224H	BDH1_uc003fxs.2_Missense_Mutation_p.Y224H|BDH1_uc003fxt.2_Missense_Mutation_p.Y137H|BDH1_uc003fxu.2_Missense_Mutation_p.Y224H	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	224					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	TACATCTCATAGCGCAGGCAG	0.622													14	53					0	0	1	0	0	
ZNF876P	642280	broad.mit.edu	37	4	206480	206480	+	RNA	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:206480G>A	uc010iba.2	+	1		c.92G>A				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						TCAGTGATTCGGCCACAGCCT	0.607													4	14					0	0	1	0	0	
ZNF732	654254	broad.mit.edu	37	4	265307	265307	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:265307T>C	uc011buu.1	-	3	1350	c.1336A>G	c.(1336-1338)AAA>GAA	p.K446E	ZNF732_uc010ibb.1_Intron	NM_001137608	NP_001131080	B4DXR9	ZN732_HUMAN	zinc finger protein 732	447	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTTCACATTTGTAAGGTTTC	0.418													3	19					0	0	1	0	0	
ABCA11P	79963	broad.mit.edu	37	4	420357	420357	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:420357C>T	uc003gae.2	-	5	1084	c.549G>A	c.(547-549)AGG>AGA	p.R183R	ABCA11P_uc003gac.2_Silent_p.R132R|ABCA11P_uc003gad.2_RNA|ABCA11P_uc011buv.1_3'UTR|ABCA11P_uc010ibd.1_Silent_p.R183R					RecName: Full=Putative ATP-binding cassette sub-family A member 11;												0						CACGCTGTTGCCTTACTGATG	0.473													18	46					0	0	1	0	0	
GAK	2580	broad.mit.edu	37	4	860170	860170	+	Missense_Mutation	SNP	C	T	T	rs140672161		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:860170C>T	uc003gbm.3	-	22	3224	c.3025G>A	c.(3025-3027)GCC>ACC	p.A1009T	GAK_uc003gbn.3_Missense_Mutation_p.A930T|GAK_uc010ibi.2_Missense_Mutation_p.A190T|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.A862T	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1009					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		AGGAAGTCGGCGCTGCAGGAT	0.627													14	57					0	0	1	0	0	
EVC2	132884	broad.mit.edu	37	4	5624401	5624401	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:5624401G>A	uc003gij.2	-	14	2418	c.2364C>T	c.(2362-2364)GCC>GCT	p.A788A	EVC2_uc011bwb.1_Silent_p.A228A|EVC2_uc003gik.2_Silent_p.A708A	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	788	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						CCAGCTGCTCGGCCCGTGCAG	0.647													15	42					0	0	1	0	0	
EVC	2121	broad.mit.edu	37	4	5733348	5733348	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:5733348G>T	uc003gil.1	+	4	765	c.581G>T	c.(580-582)CGG>CTG	p.R194L	EVC_uc003gim.1_RNA	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	194					muscle organ development	integral to membrane		p.R194R(1)		ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				ACCTTCCTCCGGGTGAACGCC	0.627													17	45					1.67942e-08	1.77595e-08	1	1	0	
WFS1	7466	broad.mit.edu	37	4	6303575	6303575	+	Missense_Mutation	SNP	C	T	T	rs112967046		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:6303575C>T	uc003giy.2	+	8	2219	c.2053C>T	c.(2053-2055)CGC>TGC	p.R685C	WFS1_uc003gix.2_Missense_Mutation_p.R685C|WFS1_uc003giz.2_Missense_Mutation_p.R503C	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	685					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		CAACATGGCGCGCACCCAGAT	0.637													22	48					0	0	1	0	0	
CCDC96	257236	broad.mit.edu	37	4	7044597	7044597	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:7044597C>T	uc003gjv.2	-	1	132	c.69G>A	c.(67-69)GCG>GCA	p.A23A	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	23											0						TGGACGGCCGCGCGGCCAGGC	0.706													3	12					0	0	1	0	0	
SORCS2	57537	broad.mit.edu	37	4	7728548	7728548	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:7728548G>A	uc003gkb.3	+	21	2787	c.2787G>A	c.(2785-2787)TCG>TCA	p.S929S	SORCS2_uc011bwi.1_Silent_p.S757S	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	929	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						CGCGGTTTTCGGACACGGGCG	0.657													33	100					0	0	1	0	0	
BOD1L	259282	broad.mit.edu	37	4	13600885	13600885	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:13600885C>T	uc003gmz.1	-	10	7756	c.7639G>A	c.(7639-7641)GCT>ACT	p.A2547T	BOD1L_uc010idr.1_Missense_Mutation_p.A1884T	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2547							DNA binding			ovary(5)|breast(1)	6						GAATGCTCAGCCACGGTCCCT	0.488											OREG0016115	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	26					0	0	1	0	0	
WDR19	57728	broad.mit.edu	37	4	39188158	39188158	+	Splice_Site	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:39188158G>T	uc003gtv.2	+	3	253	c.99_splice	c.e3-1	p.G33_splice	WDR19_uc010ifl.1_Splice_Site|WDR19_uc003gtu.1_Splice_Site_p.G33_splice|WDR19_uc011byi.1_Splice_Site	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19						cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						ATTGCTTTCAGAGCTGATTAT	0.209													7	15					0.000157383	0.000162093	1	1	0	
CORIN	10699	broad.mit.edu	37	4	47788851	47788851	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:47788851A>G	uc003gxm.2	-	3	393	c.300T>C	c.(298-300)AAT>AAC	p.N100N	CORIN_uc011bzf.1_5'UTR|CORIN_uc011bzg.1_Intron|CORIN_uc011bzh.1_Silent_p.N100N|CORIN_uc011bzi.1_Silent_p.N100N|CORIN_uc003gxn.3_Silent_p.N100N	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	100	Extracellular (Potential).				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TATAAATTGTATTTGTAAGAA	0.443													17	32					0	0	1	0	0	
EPHA5	2044	broad.mit.edu	37	4	66189849	66189849	+	Missense_Mutation	SNP	C	T	T	rs139793674		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:66189849C>T	uc003hcy.2	-	18	3290	c.3097G>A	c.(3097-3099)GGA>AGA	p.G1033R	EPHA5_uc003hcx.2_Missense_Mutation_p.G965R|EPHA5_uc003hcz.2_Missense_Mutation_p.G1011R|EPHA5_uc011cah.1_Missense_Mutation_p.G1034R|EPHA5_uc011cai.1_Missense_Mutation_p.G1012R	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	1033	Cytoplasmic (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						GGCACCATTCCGTTTACCAGC	0.418										TSP Lung(17;0.13)			8	63					0	0	1	0	0	
TMPRSS11D	9407	broad.mit.edu	37	4	68688175	68688175	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:68688175C>T	uc003hdq.2	-	10	1202	c.1137G>A	c.(1135-1137)CGG>CGA	p.R379R	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc003hdp.2_Silent_p.R160R|TMPRSS11D_uc011caj.1_Silent_p.R262R	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	379	Peptidase S1.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TAAACCAAAGCCGCCGTGAGT	0.463													22	96					0	0	1	0	0	
SMR3A	26952	broad.mit.edu	37	4	71232500	71232500	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:71232500C>A	uc003hfg.1	+	3	275	c.194C>A	c.(193-195)CCA>CAA	p.P65Q	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	65	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				AGATTTCCACCACCCCTTTCT	0.547													24	96					9.57634e-11	1.02487e-10	1	1	0	
GK2	2712	broad.mit.edu	37	4	80328918	80328918	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:80328918C>T	uc003hlu.2	-	1	455	c.437G>A	c.(436-438)AGC>AAC	p.S146N		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	146					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GAAGTAAGTGCTGAGTGGAAG	0.413													38	94					0	0	1	0	0	
FAM13A	10144	broad.mit.edu	37	4	89859380	89859380	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:89859380C>T	uc003hse.1	-	5	826	c.618G>A	c.(616-618)GGG>GGA	p.G206G	FAM13A_uc003hsf.1_5'UTR|FAM13A_uc003hsh.1_Silent_p.G20G	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	206	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TGCCTTCAAGCCCAGGTGGCA	0.393													11	38					0	0	1	0	0	
UNC5C	8633	broad.mit.edu	37	4	96140425	96140425	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:96140425G>A	uc003htp.1	-	9	1494	c.1340C>T	c.(1339-1341)GCC>GTC	p.A447V	UNC5C_uc010ilc.1_Missense_Mutation_p.A466V|UNC5C_uc003htq.2_Missense_Mutation_p.A466V	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	447	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TCTGTACATGGCTGCAGCTGA	0.483													71	192					0	0	1	0	0	
RG9MTD2	93587	broad.mit.edu	37	4	100479244	100479244	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:100479244T>C	uc003huy.2	-	3	623	c.310A>G	c.(310-312)ATT>GTT	p.I104V	RG9MTD2_uc003huz.3_Missense_Mutation_p.I104V|RG9MTD2_uc003hva.3_Missense_Mutation_p.I104V	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	104							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		CAGTCAATAATAAGGCGAAGG	0.348													8	26					0	0	1	0	0	
DNAJB14	79982	broad.mit.edu	37	4	100824939	100824939	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:100824939A>G	uc003hvl.2	-	7	1110	c.959T>C	c.(958-960)GTG>GCG	p.V320A	DNAJB14_uc003hvk.2_Missense_Mutation_p.V235A|DNAJB14_uc010ili.2_Missense_Mutation_p.V253A	NM_001031723	NP_001026893	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14	320					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		ATCTTCCTCCACACTCTTTTC	0.299													10	41					0	0	1	0	0	
DKK2	27123	broad.mit.edu	37	4	107846975	107846975	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:107846975G>T	uc003hyi.2	-	2	1059	c.354C>A	c.(352-354)CCC>CCA	p.P118P	DKK2_uc010ilw.1_RNA|DKK2_uc003hyj.1_Silent_p.P118P	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	118	DKK-type Cys-1.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		AGCGGGTACTGGGGCAGCACA	0.502													43	125					4.10826e-27	4.55194e-27	1	1	0	
ALPK1	80216	broad.mit.edu	37	4	113350368	113350368	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:113350368G>A	uc003iap.3	+	10	1138	c.859G>A	c.(859-861)GCC>ACC	p.A287T	ALPK1_uc003ian.3_Missense_Mutation_p.A287T|ALPK1_uc011cfx.1_Missense_Mutation_p.A209T|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Missense_Mutation_p.A115T	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	287							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GCTGGCAGCTGCCTTCAGTGC	0.552													54	167					0	0	1	0	0	
ANK2	287	broad.mit.edu	37	4	114267082	114267082	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:114267082C>T	uc003ibe.3	+	35	4375	c.4275C>T	c.(4273-4275)TGC>TGT	p.C1425C	ANK2_uc003ibd.3_Silent_p.C1416C|ANK2_uc003ibf.3_Silent_p.C1425C|ANK2_uc011cgc.1_Silent_p.C601C|ANK2_uc003ibg.3_Silent_p.C420C|ANK2_uc003ibh.3_Silent_p.C99C|ANK2_uc011cgb.1_Silent_p.C1440C	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1392					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGGAACCTTGCGGACGACTAT	0.403													18	50					0	0	1	0	0	
PDE5A	8654	broad.mit.edu	37	4	120527968	120527968	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:120527968G>A	uc003idh.2	-	2	792	c.637C>T	c.(637-639)CTG>TTG	p.L213L	PDE5A_uc003idf.2_Silent_p.L171L|PDE5A_uc003idg.2_Silent_p.L161L	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	213	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	ACTTCTTCCAGTGTTGAACCT	0.453													43	114					0	0	1	0	0	
SPATA5	166378	broad.mit.edu	37	4	123949476	123949476	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:123949476C>T	uc003iez.3	+	11	2078	c.2005C>T	c.(2005-2007)CCA>TCA	p.P669S	SPATA5_uc003iey.2_Missense_Mutation_p.P668S	NM_145207	NP_660208	Q8NB90	SPAT5_HUMAN	spermatogenesis associated 5	669	ATP 2 (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	mitochondrion	ATP binding|nucleoside-triphosphatase activity				0						TCTCTATGGGCCACCTGGGTG	0.423													34	85					0	0	1	0	0	
INTU	27152	broad.mit.edu	37	4	128584639	128584639	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:128584639G>T	uc003ifk.1	+	4	942	c.872G>T	c.(871-873)TGG>TTG	p.W291L	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	291										ovary(1)	1						AAGCTTCTCTGGGGAGAAGAG	0.428													4	86					0.184627	0.184627	1	1	0	
PCDH10	57575	broad.mit.edu	37	4	134073642	134073642	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:134073642A>G	uc003iha.2	+	1	3173	c.2347A>G	c.(2347-2349)AGC>GGC	p.S783G	PCDH10_uc003igz.2_Missense_Mutation_p.S783G	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	783	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GAAGAAACTCAGCAAGTCAGA	0.622													11	28					0	0	1	0	0	
PCDH10	57575	broad.mit.edu	37	4	134084249	134084249	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:134084249A>T	uc003iha.2	+	4	3741	c.2915A>T	c.(2914-2916)AAT>ATT	p.N972I		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	972	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TATCGCAGCAATCTGCATGTT	0.527													30	74					0	0	1	0	0	
PCDH18	54510	broad.mit.edu	37	4	138452481	138452481	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:138452481T>C	uc003ihe.3	-	1	1149	c.762A>G	c.(760-762)CAA>CAG	p.Q254Q	PCDH18_uc003ihf.3_Silent_p.Q247Q|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.Q34Q|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	254	Cadherin 3.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TTTCTAAGAGTTGTATTATAT	0.438													29	64					0	0	1	0	0	
NAA15	80155	broad.mit.edu	37	4	140264042	140264042	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:140264042T>C	uc003ihu.1	+	5	721	c.465T>C	c.(463-465)GCT>GCC	p.A155A		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	155	TPR 3.				angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						TTGGTTATGCTATTGCTTACC	0.338													20	79					0	0	1	0	0	
ZNF827	152485	broad.mit.edu	37	4	146770683	146770683	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:146770683T>G	uc003ikn.2	-	6	2060	c.2012A>C	c.(2011-2013)AAG>ACG	p.K671T	ZNF827_uc003ikm.2_Missense_Mutation_p.K671T|ZNF827_uc010iox.2_Missense_Mutation_p.K321T	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	671					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CTCTTTAATCTTCACCATCTG	0.453													38	90					0	0	1	0	0	
RPS3A	6189	broad.mit.edu	37	4	152024210	152024210	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:152024210T>C	uc003ilz.2	+	4	593	c.542T>C	c.(541-543)TTG>TCG	p.L181S	RPS3A_uc011cie.1_Missense_Mutation_p.L181S|SNORD73A_uc003ima.1_5'Flank	NM_001006	NP_000997	P61247	RS3A_HUMAN	ribosomal protein S3a	181					cell differentiation|endocrine pancreas development|induction of apoptosis|translational elongation|translational initiation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome			ovary(1)	1	all_hematologic(180;0.093)					ACAAATGACTTGAAAGAAGTG	0.428													6	23					0	0	1	0	0	
SFRP2	6423	broad.mit.edu	37	4	154702746	154702746	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:154702746C>A	uc003inv.1	-	3	986	c.745G>T	c.(745-747)GAG>TAG	p.E249*		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	249	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TCGTTCATCTCCTCACAGGTG	0.552													23	57					6.21321e-17	6.79948e-17	1	1	0	
DCHS2	54798	broad.mit.edu	37	4	155163835	155163835	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:155163835G>A	uc003inw.2	-	22	5666	c.5666C>T	c.(5665-5667)GCC>GTC	p.A1889V		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1889	Cadherin 16.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AAAAGCTGGGGCATTGTCATT	0.383													28	100					0	0	1	0	0	
FNIP2	57600	broad.mit.edu	37	4	159789592	159789592	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:159789592C>A	uc003iqe.3	+	13	1987	c.1804C>A	c.(1804-1806)CCA>ACA	p.P602T		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	602	Interaction with PRKAA1.				DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		TCCTGAGTGCCCAGAGGGCAC	0.592													12	49					2.62699e-14	2.84857e-14	1	1	0	
VEGFC	7424	broad.mit.edu	37	4	177713407	177713407	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:177713407G>A	uc003ius.1	-	1	489	c.59C>T	c.(58-60)CCG>CTG	p.P20L		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	20					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GCGAGGACCCGGGAGCAGCGC	0.498													4	16					0	0	1	0	0	
C4orf41	60684	broad.mit.edu	37	4	184627978	184627978	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:184627978G>A	uc003ivx.2	+	28	3250	c.3074G>A	c.(3073-3075)CGT>CAT	p.R1025H	C4orf41_uc003ivw.2_Missense_Mutation_p.R1025H|C4orf41_uc010isc.2_Missense_Mutation_p.R369H|C4orf41_uc003ivy.2_Missense_Mutation_p.R631H	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	1025											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		TCATTTGGGCGTGTCAGAGAG	0.418													15	53					0	0	1	0	0	
F11	2160	broad.mit.edu	37	4	187206920	187206920	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:187206920G>T	uc003iza.1	+	12	1766	c.1433G>T	c.(1432-1434)GGG>GTG	p.G478V		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	478	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GCAGAAAGCGGGTATGATATT	0.363													19	92					7.41877e-09	7.86862e-09	1	1	0	
FAT1	2195	broad.mit.edu	37	4	187517817	187517817	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:187517817G>A	uc003izf.2	-	25	13065	c.12877C>T	c.(12877-12879)CAC>TAC	p.H4293Y	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Missense_Mutation_p.H184Y	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4293	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGGTGCCCGTGCACAGACTCG	0.552										HNSCC(5;0.00058)			13	39					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187584590	187584590	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:187584590A>G	uc003izf.2	-	3	3631	c.3443T>C	c.(3442-3444)ATC>ACC	p.I1148T		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1148	Extracellular (Potential).|Cadherin 10.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATTTTCCATGATTTCTGGGTA	0.269										HNSCC(5;0.00058)			32	90					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187628366	187628366	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:187628366G>A	uc003izf.2	-	2	2804	c.2616C>T	c.(2614-2616)AGC>AGT	p.S872S	FAT1_uc010iso.1_Silent_p.S872S	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	872	Extracellular (Potential).|Cadherin 7.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CACCCGTCACGCTGTCAATTG	0.512										HNSCC(5;0.00058)			23	47					0	0	1	0	0	
AHRR	57491	broad.mit.edu	37	5	353844	353844	+	Splice_Site	SNP	G	A	A	rs111551936		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:353844G>A	uc003jav.2	+	3	119	c.75_splice	c.e3-1	p.Q25_splice	AHRR_uc003jaw.2_Splice_Site_p.Q21_splice|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Splice_Site_p.Q21_splice	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			TCTCCCCACAGGAGGCCCGCC	0.662													7	27					0	0	1	0	0	
SLC6A19	340024	broad.mit.edu	37	5	1216779	1216779	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:1216779C>T	uc003jbw.3	+	7	1050	c.994C>T	c.(994-996)CGC>TGC	p.R332C		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	332	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CGCCACACAGCGCTACGACGA	0.622													14	42					0	0	1	0	0	
SLC6A18	348932	broad.mit.edu	37	5	1246084	1246084	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:1246084G>A	uc003jby.1	+	12	1901	c.1778G>A	c.(1777-1779)CGG>CAG	p.R593Q		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	593	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTGCTCACCCGGCGGAGGCGG	0.731													8	18					0	0	1	0	0	
SLC6A3	6531	broad.mit.edu	37	5	1414836	1414836	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:1414836T>C	uc003jck.2	-	8	1247	c.1126A>G	c.(1126-1128)AGT>GGT	p.S376G		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	376					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	ATGGGCACACTGTGCTTCTGT	0.612													12	51					0	0	1	0	0	
ADCY2	108	broad.mit.edu	37	5	7784525	7784525	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:7784525C>A	uc003jdz.1	+	19	2499	c.2432C>A	c.(2431-2433)TCT>TAT	p.S811Y	ADCY2_uc011cmo.1_Missense_Mutation_p.S631Y|ADCY2_uc010itm.1_Missense_Mutation_p.S7Y	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	811	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GTGTCTCTCTCTATATTCTTC	0.378													19	83					3.5997e-14	3.89937e-14	1	1	0	
PRDM9	56979	broad.mit.edu	37	5	23527861	23527861	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:23527861C>T	uc003jgo.2	+	11	2846	c.2664C>T	c.(2662-2664)TAC>TAT	p.Y888Y		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	888					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGAAGCCCTACGTCTGCAGGG	0.527										HNSCC(3;0.000094)			21	48					0	0	1	0	0	
CDH10	1008	broad.mit.edu	37	5	24535293	24535293	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:24535293C>A	uc003jgr.1	-	5	1074	c.742G>T	c.(742-744)GGC>TGC	p.G248C	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	248	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CCCGATAAGCCTCCCATCTGG	0.502										HNSCC(23;0.051)			14	49					1.41608e-15	1.54337e-15	1	1	0	
C7	730	broad.mit.edu	37	5	40981654	40981654	+	Silent	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:40981654T>G	uc003jmh.2	+	18	2625	c.2511T>G	c.(2509-2511)CCT>CCG	p.P837P		NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	837	Complement control factor I module 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GCATAAGGCCTTGTGCTGCGG	0.577													6	22					0	0	1	0	0	
HCN1	348980	broad.mit.edu	37	5	45303883	45303883	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:45303883G>A	uc003jok.2	-	6	1461	c.1436C>T	c.(1435-1437)GCG>GTG	p.A479V		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	479	cAMP.|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ATTAGGATCCGCATTAGCAAA	0.383													6	104					0	0	1	0	0	
SFRS12	140890	broad.mit.edu	37	5	65457976	65457976	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:65457976G>A	uc003juo.2	+	5	763	c.103G>A	c.(103-105)GCA>ACA	p.A35T	SFRS12_uc003jun.2_Missense_Mutation_p.A151T|SFRS12_uc010iwy.2_Missense_Mutation_p.A35T	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	35					mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		TATACCAGCAGCAGCACTAGA	0.413													31	63					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79095310	79095310	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:79095310C>T	uc003kgc.2	+	13	12153	c.12081C>T	c.(12079-12081)AGC>AGT	p.S4027S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	4027	B30.2/SPRY.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACGCAGAGAGCGAGCAGTTGC	0.507													10	44					0	0	1	0	0	
SSBP2	23635	broad.mit.edu	37	5	80770364	80770364	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:80770364T>C	uc003kho.2	-	7	661	c.450A>G	c.(448-450)CCA>CCG	p.P150P	SSBP2_uc010jar.2_Silent_p.P38P|SSBP2_uc003khn.2_Silent_p.P24P|SSBP2_uc003khp.2_Silent_p.P150P|SSBP2_uc011ctp.1_Silent_p.P130P|SSBP2_uc011ctq.1_Silent_p.P120P|SSBP2_uc011ctr.1_Silent_p.P120P	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	150	Gly-rich.|Pro-rich.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		GCTGACTTCCTGGGACACCTC	0.338													20	34					0	0	1	0	0	
NR2F1	7025	broad.mit.edu	37	5	92923744	92923744	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:92923744C>T	uc003kkj.2	+	2	2272	c.585C>T	c.(583-585)GCC>GCT	p.A195A		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	195					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		TGCTGCGCGCCGAGCCCTACC	0.647													24	71					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112173858	112173858	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:112173858G>A	uc010jby.2	+	16	2947	c.2567G>A	c.(2566-2568)CGC>CAC	p.R856H	APC_uc011cvt.1_Missense_Mutation_p.R838H|APC_uc003kpz.3_Missense_Mutation_p.R856H|APC_uc003kpy.3_Missense_Mutation_p.R856H|APC_uc010jbz.2_Missense_Mutation_p.R573H|APC_uc010jca.2_Missense_Mutation_p.R156H	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	856	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.R856fs*6(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GAGAGAGAACGCGGAATTGGT	0.443		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			16	46					0	0	1	0	0	
KCNN2	3781	broad.mit.edu	37	5	113831808	113831808	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:113831808C>T	uc003kqo.2	+	8	2126	c.1669C>T	c.(1669-1671)CGG>TGG	p.R557W	KCNN2_uc003kqp.2_Missense_Mutation_p.R209W|KCNN2_uc010jcg.2_RNA|uc003kqr.1_RNA	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	557						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CAATGCTGAGCGGTCCCGGTC	0.527													15	96					0	0	1	0	0	
ZNF608	57507	broad.mit.edu	37	5	123982598	123982598	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:123982598G>A	uc003ktq.1	-	4	3602	c.3479C>T	c.(3478-3480)CCG>CTG	p.P1160L	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.P1160L|ZNF608_uc003ktt.1_Missense_Mutation_p.P1160L|ZNF608_uc003ktp.1_5'Flank	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1160						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GTTAGGCTCCGGAGTAGAGGG	0.463													37	109					0	0	1	0	0	
MEGF10	84466	broad.mit.edu	37	5	126769169	126769169	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:126769169C>T	uc003kuh.3	+	15	2170	c.1808C>T	c.(1807-1809)GCA>GTA	p.A603V	MEGF10_uc003kui.3_Missense_Mutation_p.A603V	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	603	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 11.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		TGCGAGTGTGCACCAGGCTTC	0.547													29	60					0	0	1	0	0	
CHSY3	337876	broad.mit.edu	37	5	129243833	129243833	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:129243833C>G	uc003kvd.2	+	2	866	c.866C>G	c.(865-867)ACT>AGT	p.T289S		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	289	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		CTGGGACAGACTGGCCTGGGG	0.453													18	39					0	0	1	0	0	
LRRTM2	26045	broad.mit.edu	37	5	138210079	138210079	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:138210079G>A	uc011cyz.1	-	2	628	c.171C>T	c.(169-171)AAC>AAT	p.N57N	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_Intron|LRRTM2_uc011cza.1_Intron|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	57	Extracellular (Potential).|LRRNT.					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TGTCTGTGGCGTTTGGCACTG	0.547													11	31					0	0	1	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138266343	138266343	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:138266343G>A	uc003ldh.2	+	15	2287	c.2192G>A	c.(2191-2193)CGA>CAA	p.R731Q	CTNNA1_uc011cyx.1_Missense_Mutation_p.R628Q|CTNNA1_uc011cyy.1_Missense_Mutation_p.R608Q|CTNNA1_uc003ldi.2_Missense_Mutation_p.R429Q|CTNNA1_uc003ldj.2_Missense_Mutation_p.R731Q|CTNNA1_uc003ldl.2_Missense_Mutation_p.R361Q	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	731					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GACTTTACCCGGTGAGCAGCA	0.577													43	98					0	0	1	0	0	
SLC23A1	9963	broad.mit.edu	37	5	138715404	138715404	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:138715404G>A	uc003leh.2	-	8	985	c.888C>T	c.(886-888)ATC>ATT	p.I296I	SLC23A1_uc003leg.2_Silent_p.I300I	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	296					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	CAATAGCCATGATGTCACCAC	0.602													18	48					0	0	1	0	0	
PSD2	84249	broad.mit.edu	37	5	139189281	139189281	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:139189281G>T	uc003leu.1	+	2	461	c.256G>T	c.(256-258)GAC>TAC	p.D86Y		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	86					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGGGGCCAGACTTGAACAT	0.617													47	110					2.56175e-15	2.78349e-15	1	1	0	
TMCO6	55374	broad.mit.edu	37	5	140021628	140021628	+	Nonsense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140021628C>G	uc003lgl.2	+	4	589	c.488C>G	c.(487-489)TCA>TGA	p.S163*	TMCO6_uc011czj.1_3'UTR|TMCO6_uc003lgm.2_Nonsense_Mutation_p.S163*|TMCO6_uc010jft.2_Intron|TMCO6_uc003lgn.2_Nonsense_Mutation_p.S54*|TMCO6_uc003lgo.2_5'Flank	NM_018502	NP_060972	Q96DC7	TMCO6_HUMAN	transmembrane and coiled-coil domains 6	163					protein import into nucleus	cytoplasm|nuclear pore	binding|protein transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTCACAGCTCAGACTTCATA	0.512													30	106					0	0	1	0	0	
IK	3550	broad.mit.edu	37	5	140039781	140039781	+	Splice_Site	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140039781G>A	uc003lgq.2	+	15	1465	c.1355_splice	c.e15+1	p.T452_splice		NM_006083	NP_006074	Q13123	RED_HUMAN	RED protein						cell-cell signaling|immune response	extracellular space|nucleus|soluble fraction				large_intestine(1)	1		all_hematologic(541;4.8e-07)|all_lung(500;0.000434)|Lung NSC(810;0.00161)|Breast(839;0.128)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCAGCCACGTATGTGAAAC	0.443													8	23					0	0	1	0	0	
PCDHA3	56145	broad.mit.edu	37	5	140182211	140182211	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140182211G>A	uc003lhf.2	+	1	1429	c.1429G>A	c.(1429-1431)GTG>ATG	p.V477M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.V477M	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	477	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCTTCACGGTGTCTGCGCG	0.667													37	128					0	0	1	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140221632	140221632	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140221632C>T	uc003lhs.2	+	1	726	c.726C>T	c.(724-726)TTC>TTT	p.F242F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.F242F	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	242	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCACTTTCGAACAGTCTG	0.473													10	50					0	0	1	0	0	
PCDHA10	56139	broad.mit.edu	37	5	140237471	140237471	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140237471C>T	uc003lhx.2	+	1	1838	c.1838C>T	c.(1837-1839)GCG>GTG	p.A613V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.A613V	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	613	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGCAGTCGGCGGCGGTTGGT	0.642													11	14					0	0	1	0	0	
PCDHA12	56137	broad.mit.edu	37	5	140257310	140257310	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140257310G>A	uc003lic.2	+	1	2380	c.2253G>A	c.(2251-2253)TCG>TCA	p.S751S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.S751S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	751	5 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTCTTACTCGCAGCAGAGGA	0.647													12	34					0	0	1	0	0	
PCDHB14	56122	broad.mit.edu	37	5	140604991	140604991	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140604991C>G	uc003ljb.2	+	1	1914	c.1914C>G	c.(1912-1914)CAC>CAG	p.H638Q	PCDHB14_uc011dal.1_Missense_Mutation_p.H485Q	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	638	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGCCAAGCACAGGCTGGTGG	0.701													10	64					0	0	1	0	0	
PCDHGB2	56103	broad.mit.edu	37	5	140740030	140740030	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140740030G>A	uc003ljs.1	+	1	328	c.328G>A	c.(328-330)GCT>ACT	p.A110T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.A110T	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	110	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGATACTGTCGCTGAAAATCC	0.383													26	76					0	0	1	0	0	
PCDHGA5	56110	broad.mit.edu	37	5	140746185	140746185	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140746185C>T	uc003lju.1	+	1	2288	c.2288C>T	c.(2287-2289)TCG>TTG	p.S763L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.S763L	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	763	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCGGACTCGAGGAAGAGT	0.582													40	151					0	0	1	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140763130	140763130	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140763130C>T	uc003lka.1	+	1	664	c.664C>T	c.(664-666)CGA>TGA	p.R222*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Nonsense_Mutation_p.R222*	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	222	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACCCGCCCCGATCCAGCAC	0.607													5	21					0	0	1	0	0	
PCDHGB4	8641	broad.mit.edu	37	5	140768795	140768795	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140768795G>A	uc003lkc.1	+	1	1344	c.1344G>A	c.(1342-1344)CCG>CCA	p.P448P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.P448P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	448	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAACGCTCCGGTTTTCTCAC	0.532													9	148					0	0	1	0	0	
PCDHGA8	9708	broad.mit.edu	37	5	140773876	140773876	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:140773876C>T	uc003lkd.1	+	1	2394	c.1496C>T	c.(1495-1497)GCG>GTG	p.A499V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.A499V	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	499	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCAGGGGGCGCCCCTGTCC	0.567													18	35					0	0	1	0	0	
PCDH12	51294	broad.mit.edu	37	5	141334608	141334608	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:141334608G>A	uc003llx.2	-	1	4020	c.2809C>T	c.(2809-2811)CGG>TGG	p.R937W		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	937	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAGACAGCCGGACCAGGCTC	0.612													19	93					0	0	1	0	0	
SPRY4	81848	broad.mit.edu	37	5	141694395	141694395	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:141694395G>A	uc003lml.2	-	2	538	c.279C>T	c.(277-279)AGC>AGT	p.S93S	SPRY4_uc010jgi.1_Silent_p.S116S	NM_001127496	NP_001120968	Q9C004	SPY4_HUMAN	sprouty homolog 4 isoform 2	93					multicellular organismal development	cytoplasm|ruffle membrane	protein binding			ovary(1)|lung(1)	2		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGGCGCCCGCTGAAGGAGA	0.677									Testicular_Cancer_Familial_Clustering_of				31	67					0	0	1	0	0	
KCTD16	57528	broad.mit.edu	37	5	143853254	143853254	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:143853254C>T	uc003lnm.1	+	4	1493	c.864C>T	c.(862-864)TGC>TGT	p.C288C	KCTD16_uc003lnn.1_Silent_p.C288C	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	288						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CCTCACACTGCGATTGCTGCT	0.522													13	59					0	0	1	0	0	
JAKMIP2	9832	broad.mit.edu	37	5	147029959	147029959	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:147029959C>T	uc003loq.1	-	4	1161	c.779G>A	c.(778-780)AGC>AAC	p.S260N	JAKMIP2_uc011dbx.1_Missense_Mutation_p.S218N|JAKMIP2_uc003lor.1_Missense_Mutation_p.S260N|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.S260N	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	260						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGTTTTGGGCTGCTCATGTT	0.483													18	72					0	0	1	0	0	
FBXO38	81545	broad.mit.edu	37	5	147818048	147818048	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:147818048G>A	uc003lpf.1	+	18	3131	c.3011G>A	c.(3010-3012)CGC>CAC	p.R1004H	FBXO38_uc003lpg.1_Missense_Mutation_p.R929H|FBXO38_uc003lph.2_Missense_Mutation_p.R759H	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	1004						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATATACCTACGCCCAATGCAG	0.408													17	87					0	0	1	0	0	
SLC36A2	153201	broad.mit.edu	37	5	150718651	150718651	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:150718651G>A	uc003lty.2	-	5	625	c.495C>T	c.(493-495)TAC>TAT	p.Y165Y	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_Intron|SLC36A2_uc003lua.2_Intron|SLC36A2_uc010jhv.2_Silent_p.Y165Y|SLC36A2_uc011dct.1_Silent_p.Y165Y	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	165	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAAACACAATGTACACACAGC	0.358													38	91					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150917383	150917383	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:150917383G>A	uc003lue.3	-	11	9177	c.9164C>T	c.(9163-9165)GCG>GTG	p.A3055V	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3055	Extracellular (Potential).|Cadherin 27.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAATTCATGCGCCCCAGGGCC	0.463													19	56					0	0	1	0	0	
C5orf54	63920	broad.mit.edu	37	5	159821572	159821572	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:159821572C>T	uc003lye.1	-	2	1390	c.926G>A	c.(925-927)CGC>CAC	p.R309H	C5orf54_uc003lyf.1_Missense_Mutation_p.R309H	NM_022090	NP_071373	Q8IZ13	CE054_HUMAN	transposon-derived Buster3 transposase-like	309										pancreas(1)	1						ctgaaataggcgatgatttgg	0													16	86					0	0	1	0	0	
SLU7	10569	broad.mit.edu	37	5	159835380	159835380	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:159835380G>A	uc003lyg.2	-	8	930	c.775C>T	c.(775-777)CGA>TGA	p.R259*		NM_006425	NP_006416	O95391	SLU7_HUMAN	step II splicing factor SLU7	259					alternative nuclear mRNA splicing, via spliceosome|nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|cytoplasm|nuclear speck|small nuclear ribonucleoprotein complex	pre-mRNA 3'-splice site binding|second spliceosomal transesterification activity|zinc ion binding			ovary(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACAGTAATTCGTCTCTTGGAG	0.358													16	52					0	0	1	0	0	
MAT2B	27430	broad.mit.edu	37	5	162943693	162943693	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:162943693G>A	uc003lzk.2	+	5	804	c.696G>A	c.(694-696)CGG>CGA	p.R232R	MAT2B_uc003lzj.2_Silent_p.R221R|MAT2B_uc003lzl.1_Silent_p.R232R|MAT2B_uc003lzm.2_5'Flank	NM_013283	NP_037415	Q9NZL9	MAT2B_HUMAN	methionine adenosyltransferase II, beta isoform	232					extracellular polysaccharide biosynthetic process|methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol|methionine adenosyltransferase complex|nucleus	dTDP-4-dehydrorhamnose reductase activity|methionine adenosyltransferase regulator activity|protein binding			upper_aerodigestive_tract(1)	1	Renal(175;0.000281)	Medulloblastoma(196;0.0208)|all_neural(177;0.0765)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.027)|OV - Ovarian serous cystadenocarcinoma(192;0.0406)|Epithelial(171;0.0797)	L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	CTGTGTGCCGGCAGCTAGCAG	0.478													18	53					0	0	1	0	0	
ODZ2	57451	broad.mit.edu	37	5	167675370	167675370	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:167675370G>A	uc010jjd.2	+	27	7399	c.7399G>A	c.(7399-7401)GTG>ATG	p.V2467M	ODZ2_uc003lzr.3_Missense_Mutation_p.V2237M|ODZ2_uc003lzt.3_Missense_Mutation_p.V1840M|ODZ2_uc010jje.2_Missense_Mutation_p.V1731M	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GAAGAACTACGTGACAGGTGA	0.517													6	13					0	0	1	0	0	
WWC1	23286	broad.mit.edu	37	5	167891734	167891734	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:167891734C>T	uc003lzu.2	+	21	3010	c.2917C>T	c.(2917-2919)CCT>TCT	p.P973S	WWC1_uc003lzv.2_Missense_Mutation_p.P979S|WWC1_uc011den.1_Missense_Mutation_p.P979S|WWC1_uc003lzw.2_Missense_Mutation_p.P772S|WWC1_uc010jjf.1_Missense_Mutation_p.P245S	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	973	Interaction with PRKCZ.|Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		ACCCCCACAGCCTTCCTCGGT	0.587													15	50					0	0	1	0	0	
N4BP3	23138	broad.mit.edu	37	5	177548704	177548704	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:177548704A>C	uc003mik.1	+	5	1584	c.1337A>C	c.(1336-1338)GAC>GCC	p.D446A	N4BP3_uc003mil.1_Missense_Mutation_p.D115A	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	446	Potential.					cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGACTGATGACTGCAAGAGC	0.692													4	36					0	0	1	0	0	
HNRNPH1	3187	broad.mit.edu	37	5	179044892	179044892	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:179044892C>T	uc003mkf.3	-	8	935	c.829G>A	c.(829-831)GGG>AGG	p.G277R	HNRNPH1_uc011dgn.1_Missense_Mutation_p.G7R|HNRNPH1_uc003mkg.3_Missense_Mutation_p.G185R|HNRNPH1_uc003mke.3_Missense_Mutation_p.G277R|HNRNPH1_uc003mkh.3_Missense_Mutation_p.G277R	NM_005520	NP_005511	P31943	HNRH1_HUMAN	heterogeneous nuclear ribonucleoprotein H1	277	2 X 16 AA Gly-rich approximate repeats.				regulation of RNA splicing	actin cytoskeleton|catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|poly(U) RNA binding|protein binding				0						CCACCATCCCCGTATCTGTGA	0.418													19	67					0	0	1	0	0	
TBC1D9B	23061	broad.mit.edu	37	5	179306143	179306143	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:179306143G>A	uc003mlh.2	-	9	1508	c.1471C>T	c.(1471-1473)CGT>TGT	p.R491C	TBC1D9B_uc003mli.2_Missense_Mutation_p.R491C|TBC1D9B_uc003mlj.2_Missense_Mutation_p.R491C	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	491						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACACGCCACGCCCGTACTCG	0.612													6	14					0	0	1	0	0	
MAPK9	5601	broad.mit.edu	37	5	179676069	179676069	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:179676069G>A	uc003mls.3	-	6	791	c.520C>T	c.(520-522)CGG>TGG	p.R174W	MAPK9_uc003mlt.3_Missense_Mutation_p.R174W|MAPK9_uc010jlc.2_Missense_Mutation_p.R174W|MAPK9_uc003mlv.3_Missense_Mutation_p.R174W|MAPK9_uc011dgx.1_Missense_Mutation_p.R174W	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	174	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACGCTGTCCGGGCCAGGCCA	0.488													38	138					0	0	1	0	0	
GCNT2	2651	broad.mit.edu	37	6	10530035	10530035	+	Silent	SNP	C	T	T	rs150542637	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:10530035C>T	uc010joo.2	+	3	1442	c.891C>T	c.(889-891)GAC>GAT	p.D297D	GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Silent_p.D296D|GCNT2_uc010jon.2_Silent_p.D296D	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	297	Lumenal (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		ACAGCCCCGACGAACATTTCT	0.473													28	99					0	0	1	0	0	
MBOAT1	154141	broad.mit.edu	37	6	20144502	20144502	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:20144502A>C	uc003ncx.1	-	4	573	c.368T>G	c.(367-369)ATC>AGC	p.I123S	MBOAT1_uc011dji.1_5'UTR	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	123					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			TATTCGGCTGATGTGGCATAT	0.353													27	75					0	0	1	0	0	
HIST1H2BA	255626	broad.mit.edu	37	6	25727363	25727363	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:25727363C>T	uc003nfd.2	+	1	227	c.227C>T	c.(226-228)GCG>GTG	p.A76V	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	76					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						GAGCGTATAGCGAGCGAGGCA	0.502													12	63					0	0	1	0	0	
SLC17A4	10050	broad.mit.edu	37	6	25777084	25777084	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:25777084A>G	uc003nfe.2	+	10	1284	c.1165A>G	c.(1165-1167)AGA>GGA	p.R389G	SLC17A4_uc011djx.1_Missense_Mutation_p.R159G|SLC17A4_uc003nff.1_Missense_Mutation_p.R178G|SLC17A4_uc003nfg.2_Missense_Mutation_p.R326G|SLC17A4_uc010jqa.2_Intron	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	389					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						GCCCTGGGTCAGATCCAGCCA	0.537													40	126					0	0	1	0	0	
HIST1H2AD	3013	broad.mit.edu	37	6	26199464	26199464	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:26199464C>T	uc003ngw.2	-	1	8	c.8G>A	c.(7-9)GGA>GAA	p.G3E	HIST1H3D_uc003ngv.2_5'UTR|HIST1H2BF_uc003ngx.2_5'Flank	NM_021065	NP_066409	P20671	H2A1D_HUMAN	histone cluster 1, H2ad	3					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.196)				CTTGCCGCGTCCGGACATTTT	0.498													3	19					0	0	1	0	0	
HIST1H2BJ	8970	broad.mit.edu	37	6	27100413	27100413	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:27100413G>A	uc003niv.2	-	1	163	c.117C>T	c.(115-117)TCC>TCT	p.S39S	HIST1H2BJ_uc003niu.1_RNA|HIST1H2AG_uc003niw.2_5'Flank	NM_021058	NP_066402	P06899	H2B1J_HUMAN	histone cluster 1, H2bj	39					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						ACACATAGATGGAATAGCTCT	0.542													19	235					0	0	1	0	0	
HIST1H2AH	85235	broad.mit.edu	37	6	27115219	27115219	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:27115219G>A	uc003niz.2	+	1	312	c.312G>A	c.(310-312)GCG>GCA	p.A104A	HIST1H2BK_uc003nix.1_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080596	NP_542163	Q96KK5	H2A1H_HUMAN	histone cluster 1, H2ah	104					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCACCATCGCGCAGGGTGGTG	0.562													33	75					0	0	1	0	0	
MDC1	9656	broad.mit.edu	37	6	30681832	30681832	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:30681832G>T	uc003nrg.3	-	3	705	c.265C>A	c.(265-267)CTC>ATC	p.L89I	MDC1_uc003nrf.3_5'Flank|MDC1_uc011dmp.1_5'UTR|MDC1_uc003nrh.1_5'UTR|MDC1_uc003nri.2_Missense_Mutation_p.L89I	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	89	Interaction with the MRN complex.|FHA.|Interaction with CHEK2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						CAGTCTCGGAGGATAGGTGCC	0.522								Other_conserved_DNA_damage_response_genes					16	70					1.99824e-07	2.10268e-07	1	1	0	
MICB	4277	broad.mit.edu	37	6	31474135	31474135	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:31474135C>T	uc003ntn.3	+	3	657	c.541C>T	c.(541-543)CGC>TGC	p.R181C	MICB_uc011dnm.1_Missense_Mutation_p.R149C|MICB_uc003nto.3_Missense_Mutation_p.R138C	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	181	Extracellular (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						GACACACTATCGCGCTATGCA	0.537													16	39					0	0	1	0	0	
BAT1	7919	broad.mit.edu	37	6	31500674	31500674	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:31500674G>A	uc003ntt.2	-	7	1381	c.750C>T	c.(748-750)TTC>TTT	p.F250F	BAT1_uc003ntq.2_5'Flank|BAT1_uc003ntr.2_Silent_p.F57F|BAT1_uc003nts.2_Silent_p.F250F|BAT1_uc011dnn.1_Silent_p.F172F|BAT1_uc003ntu.2_Silent_p.F250F|BAT1_uc003ntv.2_Silent_p.F250F	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	250					intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						CATCATCCACGAAGATCTCCA	0.378													17	34					0	0	1	0	0	
DAXX	1616	broad.mit.edu	37	6	33288600	33288600	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:33288600G>A	uc003oec.2	-	3	1156	c.952C>T	c.(952-954)CGA>TGA	p.R318*	ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Nonsense_Mutation_p.R243*|DAXX_uc011dre.1_Nonsense_Mutation_p.R330*|DAXX_uc003oed.2_Nonsense_Mutation_p.R318*|DAXX_uc010juw.2_Nonsense_Mutation_p.R243*	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	318					activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						CCCACATCTCGGAAGGCATCC	0.582			Mis|F|N		Pancreatic neuroendocrine tumors								35	119					0	0	1	0	0	
ZBTB9	221504	broad.mit.edu	37	6	33423758	33423758	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:33423758A>C	uc003oeq.2	+	2	1149	c.881A>C	c.(880-882)GAG>GCG	p.E294A		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	294					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGCCTAAGGAGGAGATATCA	0.537													32	84					0	0	1	0	0	
GRM4	2914	broad.mit.edu	37	6	34101001	34101001	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:34101001G>A	uc003oir.3	-	1	443	c.273C>T	c.(271-273)AAC>AAT	p.N91N	GRM4_uc011dsn.1_Silent_p.N91N|GRM4_uc010jvh.2_Silent_p.N91N|GRM4_uc010jvi.2_Translation_Start_Site|GRM4_uc010jvk.1_Silent_p.N10N	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	91	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	GGTCCGGGTCGTTGTTGATGC	0.622													10	30					0	0	1	0	0	
SCUBE3	222663	broad.mit.edu	37	6	35210956	35210956	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:35210956C>T	uc003okf.1	+	15	1858	c.1852C>T	c.(1852-1854)CGA>TGA	p.R618*	SCUBE3_uc003okg.1_Nonsense_Mutation_p.R617*|SCUBE3_uc003okh.1_Nonsense_Mutation_p.R505*	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	618					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						AGCCGGGGAGCGAGCAGAGCC	0.622													22	60					0	0	1	0	0	
ETV7	51513	broad.mit.edu	37	6	36339242	36339242	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:36339242G>T	uc003omb.2	-	5	678	c.529C>A	c.(529-531)CCT>ACT	p.P177T	ETV7_uc003olz.1_Missense_Mutation_p.P177T|ETV7_uc003oma.1_Missense_Mutation_p.P122T|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Missense_Mutation_p.P122T|ETV7_uc010jwj.2_Missense_Mutation_p.P118T|ETV7_uc010jwh.2_Missense_Mutation_p.P96T|ETV7_uc010jwi.2_Intron|ETV7_uc011dtl.1_Missense_Mutation_p.P26T	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	177					organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						GCCAGGCCAGGGTCATCCAGG	0.642													4	11					0.00909568	0.00920787	1	1	0	
DNAH8	1769	broad.mit.edu	37	6	38831683	38831683	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:38831683T>C	uc003ooe.1	+	43	6294	c.5694T>C	c.(5692-5694)GAT>GAC	p.D1898D		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GCTGTTTTGATGAGTTTAACA	0.328													28	82					0	0	1	0	0	
FOXP4	116113	broad.mit.edu	37	6	41562613	41562613	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:41562613C>T	uc003oql.2	+	14	2000	c.1542C>T	c.(1540-1542)GCC>GCT	p.A514A	FOXP4_uc003oqm.2_Silent_p.A512A|FOXP4_uc003oqn.2_Silent_p.A501A	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	514	Fork-head.				embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CACAGAACGCCGTGCGCCACA	0.607											OREG0004067	type=REGULATORY REGION|Gene=FOXP4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	12	44					0	0	1	0	0	
ZNF318	24149	broad.mit.edu	37	6	43325106	43325106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:43325106G>A	uc003oux.2	-	3	1024	c.946C>T	c.(946-948)CGA>TGA	p.R316*	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	316	Potential.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TCCAGTTCTCGAAACTCAGGG	0.522													11	34					0	0	1	0	0	
ENPP4	22875	broad.mit.edu	37	6	46107818	46107818	+	Silent	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:46107818T>C	uc003oxy.2	+	2	757	c.498T>C	c.(496-498)AAT>AAC	p.N166N		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	166	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						GACTAAATAATATTACTATGT	0.408													47	75					0	0	1	0	0	
TNFRSF21	27242	broad.mit.edu	37	6	47254169	47254169	+	Missense_Mutation	SNP	C	T	T	rs142206681	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:47254169C>T	uc003oyv.2	-	2	692	c.259G>A	c.(259-261)GTC>ATC	p.V87I		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	87	Extracellular (Potential).|TNFR-Cys 1.				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			CTGCTGCAGACGCGCAGGCTT	0.537													16	47					0	0	1	0	0	
PGK2	5232	broad.mit.edu	37	6	49754076	49754076	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:49754076C>A	uc003ozu.2	-	1	932	c.825G>T	c.(823-825)AAG>AAT	p.K275N		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	275					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TTACACCATTCTTTTGTGCTT	0.428													42	120					9.84934e-19	1.08455e-18	1	1	0	
BMP5	653	broad.mit.edu	37	6	55623807	55623807	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:55623807G>A	uc003pcq.2	-	6	1923	c.1211C>T	c.(1210-1212)ACT>ATT	p.T404I	BMP5_uc011dxf.1_Intron	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	404					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCTTACCAGAGTCTGAACTAT	0.348													22	63					0	0	1	0	0	
EYS	346007	broad.mit.edu	37	6	66044985	66044985	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:66044985A>G	uc011dxu.1	-	11	2192	c.1654T>C	c.(1654-1656)TAT>CAT	p.Y552H	EYS_uc003peq.2_Missense_Mutation_p.Y552H|EYS_uc003per.1_Missense_Mutation_p.Y552H	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	552					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						AAACATAGATACCGATATTCC	0.353													15	49					0	0	1	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83845559	83845559	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:83845559G>A	uc003pjs.1	+	20	3352	c.3092G>A	c.(3091-3093)AGT>AAT	p.S1031N	DOPEY1_uc011dyy.1_Missense_Mutation_p.S1022N|DOPEY1_uc010kbl.1_Missense_Mutation_p.S1022N|DOPEY1_uc003pjt.2_5'Flank	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1031					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GGAGAGGAGAGTGACAAGCAT	0.378													30	62					0	0	1	0	0	
SFRS13B	135295	broad.mit.edu	37	6	89808605	89808605	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:89808605G>A	uc003pmy.3	-	5	672	c.478C>T	c.(478-480)CGG>TGG	p.R160W		NM_080743	NP_542781	Q8WXF0	SRS12_HUMAN	serine-arginine repressor protein	160	Arg/Ser-rich (RS domain).				assembly of spliceosomal tri-snRNP|cytoplasmic transport|negative regulation of nuclear mRNA splicing, via spliceosome|nuclear mRNA 5'-splice site recognition|regulation of alternative nuclear mRNA splicing, via spliceosome	nucleoplasm	nucleotide binding|RNA binding|RS domain binding|unfolded protein binding				0						GAGGTAGACCGCCTTGGTAAT	0.438													55	167					0	0	1	0	0	
UBE2J1	51465	broad.mit.edu	37	6	90052126	90052126	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:90052126C>T	uc010kcb.2	-	4	327	c.154G>A	c.(154-156)GAT>AAT	p.D52N	UBE2J1_uc003pnc.2_Missense_Mutation_p.D52N	NM_016021	NP_057105	Q9Y385	UB2J1_HUMAN	ubiquitin-conjugating enzyme E2, J1	52	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ATP binding|ubiquitin-protein ligase activity				0		all_cancers(76;1.65e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;2.5e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0139)		CCATCAAAATCGGAGTCTGGG	0.403													10	51					0	0	1	0	0	
FUT9	10690	broad.mit.edu	37	6	96652014	96652014	+	Missense_Mutation	SNP	G	A	A	rs142793962		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:96652014G>A	uc003pop.3	+	3	1324	c.983G>A	c.(982-984)CGA>CAA	p.R328Q		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	328	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity	p.R328Q(1)		skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AATCTTCCACGATTTTGGGAA	0.358													21	58					0	0	1	0	0	
SOBP	55084	broad.mit.edu	37	6	107854724	107854724	+	Silent	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:107854724C>A	uc003prx.2	+	4	987	c.483C>A	c.(481-483)CGC>CGA	p.R161R	SOBP_uc003prw.1_Silent_p.R161R	NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	161	FCS-type 1.						metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		GAATCAAGCGCTATTCCCTGA	0.428													27	118					2.4375e-19	2.68679e-19	1	1	0	
REV3L	5980	broad.mit.edu	37	6	111654417	111654417	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:111654417C>T	uc003puy.3	-	23	8157	c.7834G>A	c.(7834-7836)GTT>ATT	p.V2612I	REV3L_uc003pux.3_Missense_Mutation_p.V2534I|REV3L_uc003puz.3_Missense_Mutation_p.V2534I|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2612					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		AAATCCAAAACGAGAACAGAG	0.438								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					6	33					0	0	1	0	0	
FYN	2534	broad.mit.edu	37	6	112024133	112024133	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:112024133G>A	uc003pvj.2	-	7	992	c.652C>T	c.(652-654)CGG>TGG	p.R218W	FYN_uc003pvi.2_Missense_Mutation_p.R218W|FYN_uc003pvk.2_Missense_Mutation_p.R218W|FYN_uc003pvh.2_Missense_Mutation_p.R218W|FYN_uc010kdy.1_Missense_Mutation_p.R24W	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	218	SH2.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	AACTGGGCCCGGGTGGTAATG	0.408													25	40					0	0	1	0	0	
C6orf174	387104	broad.mit.edu	37	6	127796885	127796885	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:127796885G>A	uc003qbd.2	-	6	3151	c.2286C>T	c.(2284-2286)AGC>AGT	p.S762S	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	762						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AGTCGTCGTCGCTCTCCTTCT	0.701													38	82					0	0	1	0	0	
PERP	64065	broad.mit.edu	37	6	138428376	138428376	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:138428376G>A	uc003qht.2	-	1	285	c.102C>T	c.(100-102)GGC>GGT	p.G34G		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	34					apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		ACTGCAACCAGCCGCGGCCGG	0.692													30	65					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152708388	152708388	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:152708388T>G	uc010kiw.2	-	54	8908	c.8306A>C	c.(8305-8307)AAG>ACG	p.K2769T	SYNE1_uc003qot.3_Missense_Mutation_p.K2776T|SYNE1_uc003qou.3_Missense_Mutation_p.K2769T|SYNE1_uc010kjb.1_Missense_Mutation_p.K2752T	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2769	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGGACGAACTTCTCTTTCAG	0.483										HNSCC(10;0.0054)			34	110					0	0	1	0	0	
PLG	5340	broad.mit.edu	37	6	161135924	161135924	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:161135924G>T	uc003qtm.3	+	6	709	c.646G>T	c.(646-648)GCT>TCT	p.A216S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	216	Kringle 2.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GAGCCCACACGCTCATGGATA	0.443													13	31					0.000219431	0.000225779	1	1	0	
MAP3K4	4216	broad.mit.edu	37	6	161523007	161523007	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:161523007C>A	uc003qtn.2	+	18	3900	c.3758C>A	c.(3757-3759)CCC>CAC	p.P1253H	MAP3K4_uc010kkc.1_Missense_Mutation_p.P1249H|MAP3K4_uc003qto.2_Missense_Mutation_p.P1203H|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.P706H|MAP3K4_uc003qtp.2_Missense_Mutation_p.P189H|MAP3K4_uc003qtq.2_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1253					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		CACTCAAGCCCCACGGAGGAG	0.438													16	59					3.41278e-10	3.6378e-10	1	1	0	
PSMB1	5689	broad.mit.edu	37	6	170858188	170858188	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:170858188T>A	uc011ehe.1	-	2	214	c.127A>T	c.(127-129)ATT>TTT	p.I43F	PSMB1_uc003qxq.2_RNA|PSMB1_uc003qxr.2_5'UTR	NM_002793	NP_002784	P20618	PSB1_HUMAN	proteasome beta 1 subunit precursor	43					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cell junction|cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.0563)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;7.5e-23)|BRCA - Breast invasive adenocarcinoma(81;4.88e-06)|GBM - Glioblastoma multiforme(31;0.00643)	Bortezomib(DB00188)	TCTCCAGCAATTGCCAGTATA	0.368													16	32					0	0	1	0	0	
TBP	6908	broad.mit.edu	37	6	170871061	170871061	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:170871061G>A	uc003qxt.2	+	3	469	c.237G>A	c.(235-237)CAG>CAA	p.Q79Q	TBP_uc003qxu.2_Silent_p.Q79Q|TBP_uc011ehf.1_Silent_p.Q59Q|TBP_uc011ehg.1_Silent_p.Q79Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	79	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.169													4	35					0	0	1	0	0	
PRKAR1B	5575	broad.mit.edu	37	7	751062	751062	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:751062G>A	uc003siu.1	-	3	187	c.81C>T	c.(79-81)ATC>ATT	p.I27I	PRKAR1B_uc003siv.2_Silent_p.I27I|PRKAR1B_uc003siw.1_Silent_p.I27I	NM_002735	NP_002726	P31321	KAP1_HUMAN	protein kinase, cAMP-dependent, regulatory, type	27	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|protein phosphorylation|regulation of insulin secretion|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|Epithelial(4;5.75e-19)|OV - Ovarian serous cystadenocarcinoma(56;2.01e-18)|all cancers(6;3.96e-16)|BRCA - Breast invasive adenocarcinoma(126;0.152)		GGACCTGCTGGATCCCGTGCA	0.632													29	78					0	0	1	0	0	
AMZ1	155185	broad.mit.edu	37	7	2749293	2749293	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:2749293G>A	uc003smr.1	+	6	1152	c.791G>A	c.(790-792)TGC>TAC	p.C264Y	AMZ1_uc003sms.1_Silent_p.L207L|AMZ1_uc011jwa.1_Missense_Mutation_p.C13Y	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	264							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CACGAGCTCTGCCACCTTCTG	0.706											OREG0017838	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	58					0	0	1	0	0	
FSCN1	6624	broad.mit.edu	37	7	5633137	5633137	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:5633137C>T	uc003sou.2	+	1	684	c.570C>T	c.(568-570)ACC>ACT	p.T190T		NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	190					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		GCGTGCAGACCGCCGACCACC	0.736													3	26					0	0	1	0	0	
SP8	221833	broad.mit.edu	37	7	20824584	20824584	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:20824584G>A	uc003suy.2	-	3	1039	c.798C>T	c.(796-798)GGC>GGT	p.G266G	SP8_uc003suz.2_Silent_p.G284G	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	266					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						GCGAGGAGGCGCCGCTGCTGA	0.706													3	5					0	0	1	0	0	
SP4	6671	broad.mit.edu	37	7	21470090	21470090	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:21470090T>C	uc003sva.2	+	3	1488	c.1307T>C	c.(1306-1308)ATC>ACC	p.I436T	SP4_uc003svb.2_Missense_Mutation_p.I123T	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	436					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						ATTCAGACCATCCAGCAGCAG	0.478													38	111					0	0	1	0	0	
CCDC126	90693	broad.mit.edu	37	7	23651149	23651149	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:23651149A>G	uc003swl.2	+	3	672	c.215A>G	c.(214-216)AAC>AGC	p.N72S	CCDC126_uc003swm.2_Missense_Mutation_p.N72S|CCDC126_uc003swn.2_Missense_Mutation_p.N72S	NM_138771	NP_620126	Q96EE4	CC126_HUMAN	coiled-coil domain containing 126 precursor	72						extracellular region				ovary(1)|skin(1)	2						GATGTCGAGAACGGTGCTTCT	0.368													35	85					0	0	1	0	0	
CCDC129	223075	broad.mit.edu	37	7	31682938	31682938	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:31682938T>C	uc003tcj.1	+	11	2947	c.1954T>C	c.(1954-1956)TAT>CAT	p.Y652H	CCDC129_uc011kad.1_Missense_Mutation_p.Y662H|CCDC129_uc003tci.1_Missense_Mutation_p.Y503H|CCDC129_uc011kae.1_Missense_Mutation_p.Y678H|CCDC129_uc003tck.1_Missense_Mutation_p.Y560H	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	652											0						AATCACACCTTATGCAACTGA	0.488													5	62					0	0	1	0	0	
NPSR1	387129	broad.mit.edu	37	7	34867042	34867042	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:34867042G>A	uc003teg.1	+	5	636	c.508G>A	c.(508-510)GCC>ACC	p.A170T	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.A170T|NPSR1_uc010kwt.1_Missense_Mutation_p.A17T|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.A104T|NPSR1_uc003tei.1_Missense_Mutation_p.A170T|NPSR1_uc010kww.1_Missense_Mutation_p.A159T|NPSR1_uc011kar.1_Missense_Mutation_p.A104T|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	170	Helical; Name=4; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CATTGTGATCGCCTGGAGCCT	0.512													17	35					0	0	1	0	0	
NPSR1	387129	broad.mit.edu	37	7	34888209	34888209	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:34888209C>T	uc003teg.1	+	8	1087	c.959C>T	c.(958-960)GCA>GTA	p.A320V	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.A320V|NPSR1_uc010kwt.1_Missense_Mutation_p.A167V|NPSR1_uc010kwu.1_Missense_Mutation_p.A110V|NPSR1_uc010kwv.1_Missense_Mutation_p.A254V|NPSR1_uc003tei.1_Missense_Mutation_p.A320V|NPSR1_uc010kww.1_Missense_Mutation_p.A309V|NPSR1_uc011kar.1_Missense_Mutation_p.A254V	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	320	Helical; Name=7; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AACCTGCCAGCATTGAATAGT	0.498													40	149					0	0	1	0	0	
ANLN	54443	broad.mit.edu	37	7	36447449	36447449	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:36447449C>T	uc003tff.2	+	5	1184	c.980C>T	c.(979-981)ACG>ATG	p.T327M	ANLN_uc011kaz.1_Missense_Mutation_p.T239M|ANLN_uc003tfg.2_Missense_Mutation_p.T327M|ANLN_uc010kxe.2_Missense_Mutation_p.T327M	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	327	Interaction with F-actin.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CCTCTGAAAACGGGGGTATCG	0.393													15	46					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	39894028	39894028	+	RNA	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:39894028T>C	uc003thg.2	-	1		c.832A>G								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		AAAATAGTAATGAAAGATTTT	0.308													7	28					0	0	1	0	0	
INHBA	3624	broad.mit.edu	37	7	41729812	41729812	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:41729812G>A	uc003thq.2	-	2	952	c.717C>T	c.(715-717)GAC>GAT	p.D239D	INHBA_uc003thr.2_Silent_p.D239D	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	239					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CAATCCGAACGTCCAGGGAGC	0.468										TSP Lung(11;0.080)			6	43					0	0	1	0	0	
STK17A	9263	broad.mit.edu	37	7	43647881	43647881	+	Missense_Mutation	SNP	A	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:43647881A>T	uc003tih.2	+	3	597	c.446A>T	c.(445-447)CAG>CTG	p.Q149L		NM_004760	NP_004751	Q9UEE5	ST17A_HUMAN	serine/threonine kinase 17a	149	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			skin(2)	2						ATCTTTGACCAGTGTGTTGCA	0.373													13	38					0	0	1	0	0	
ADCY1	107	broad.mit.edu	37	7	45614596	45614596	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:45614596G>A	uc003tne.3	+	1	472	c.454G>A	c.(454-456)GCC>ACC	p.A152T	ADCY1_uc003tnd.2_5'UTR	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	152					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ttccgccggggccgctggggg	0.507													5	19					0	0	1	0	0	
TNS3	64759	broad.mit.edu	37	7	47409180	47409180	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:47409180C>T	uc003tnv.2	-	17	1430	c.1063G>A	c.(1063-1065)GCG>ACG	p.A355T	TNS3_uc003tnw.2_Missense_Mutation_p.A355T	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	355						focal adhesion	protein binding			ovary(4)	4						CTCACCTTCGCGTAAAGGCTG	0.607													12	48					0	0	1	0	0	
SUMF2	25870	broad.mit.edu	37	7	56136300	56136300	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:56136300G>A	uc003trv.2	+	2	281	c.250G>A	c.(250-252)GAC>AAC	p.D84N	PSPH_uc003trj.2_Intron|SUMF2_uc003tro.2_Missense_Mutation_p.D84N|SUMF2_uc011kcv.1_RNA|SUMF2_uc011kcw.1_Missense_Mutation_p.D84N|SUMF2_uc011kcx.1_Missense_Mutation_p.D84N|SUMF2_uc003trt.2_Intron|SUMF2_uc011kcy.1_Missense_Mutation_p.D84N|SUMF2_uc011kcz.1_Missense_Mutation_p.D84N|SUMF2_uc003tru.2_RNA|SUMF2_uc011kda.1_5'UTR|SUMF2_uc003trx.2_RNA	NM_001130069	NP_001123541	Q8NBJ7	SUMF2_HUMAN	sulfatase modifying factor 2 isoform e	65						endoplasmic reticulum lumen	metal ion binding			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTTTGCCATCGACATATTTCC	0.453													6	31					0	0	1	0	0	
GUSB	2990	broad.mit.edu	37	7	65444796	65444796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:65444796G>A	uc003tun.2	-	3	575	c.499C>T	c.(499-501)CGA>TGA	p.R167*	GUSB_uc011kdt.1_Intron|GUSB_uc010kzw.1_Intron	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	167					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						ATAGTGATTCGGAGCCGGGAG	0.622													16	69					0	0	1	0	0	
AUTS2	26053	broad.mit.edu	37	7	70255373	70255373	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:70255373C>T	uc003tvw.3	+	19	3914	c.3171C>T	c.(3169-3171)GGC>GGT	p.G1057G	AUTS2_uc003tvx.3_Silent_p.G1033G|AUTS2_uc011keg.1_Silent_p.G509G	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1057										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CCCTCCCGGGCGGAGAGCGCT	0.627													7	28					0	0	1	0	0	
POM121	9883	broad.mit.edu	37	7	72418920	72418920	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:72418920C>A	uc010lam.1	+	16	3952	c.2911C>A	c.(2911-2913)CTT>ATT	p.L971I	NSUN5P2_uc003twl.2_RNA|NSUN5P2_uc003twm.2_3'UTR|NSUN5P2_uc003twn.2_3'UTR|NSUN5P2_uc003two.2_3'UTR|NSUN5P2_uc003twq.2_3'UTR|NSUN5P2_uc010lan.1_3'UTR|NSUN5P2_uc003twp.2_3'UTR	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACCCAATAACCTTTCAAAACG	0.527													37	67					1.67305e-13	1.80682e-13	1	1	0	
NCF1	653361	broad.mit.edu	37	7	74197373	74197373	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:74197373C>T	uc003ubb.2	+	6	613	c.543C>T	c.(541-543)GAC>GAT	p.D181D	NCF1_uc010lbs.1_Silent_p.D181D|NCF1_uc011kfh.1_Missense_Mutation_p.R101C	NM_000265	NP_000256	P14598	NCF1_HUMAN	neutrophil cytosolic factor 1	181	SH3 1.				cell communication|cellular defense response|innate immune response|protein targeting to membrane|respiratory burst|superoxide anion generation	cytosol|NADPH oxidase complex|soluble fraction	electron carrier activity|GTP binding|GTPase activity|phosphatidylinositol binding|SH3 domain binding|superoxide-generating NADPH oxidase activity			skin(1)	1						CCACGGGGGACGTGGTGGAGG	0.642													14	36					0	0	1	0	0	
RUNDC3B	154661	broad.mit.edu	37	7	87258228	87258228	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:87258228C>T	uc003ujb.2	+	1	500	c.89C>T	c.(88-90)GCG>GTG	p.A30V	ABCB1_uc003uiz.1_Intron|ABCB1_uc003uja.1_Intron|ABCB1_uc010lei.1_Intron|RUNDC3B_uc011khd.1_Missense_Mutation_p.A30V|RUNDC3B_uc011khe.1_Missense_Mutation_p.A30V|RUNDC3B_uc003ujc.2_Missense_Mutation_p.A30V	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	30										skin(1)	1	Esophageal squamous(14;0.00164)					CGCAATGCTGCGGTGGAGAGG	0.726													8	25					0	0	1	0	0	
CLDN12	9069	broad.mit.edu	37	7	90042012	90042012	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:90042012G>A	uc003ukp.2	+	5	658	c.22G>A	c.(22-24)GCA>ACA	p.A8T	CLDN12_uc003ukq.2_Missense_Mutation_p.A8T|CLDN12_uc010leq.2_Missense_Mutation_p.A8T|CLDN12_uc003ukr.2_Missense_Mutation_p.A8T|CLDN12_uc003uks.2_Missense_Mutation_p.A8T	NM_012129	NP_036261	P56749	CLD12_HUMAN	claudin 12	8	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGATGTCCACGCAGCCACAGT	0.522													11	68					0	0	1	0	0	
LMTK2	22853	broad.mit.edu	37	7	97823250	97823250	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:97823250G>A	uc003upd.1	+	11	3766	c.3473G>A	c.(3472-3474)AGC>AAC	p.S1158N		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1158					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GCCAGAAAGAGCCAGCCAGAT	0.592													9	52					0	0	1	0	0	
AGFG2	3268	broad.mit.edu	37	7	100153232	100153232	+	Splice_Site	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:100153232G>A	uc003uvf.2	+	6	888	c.752_splice	c.e6-1	p.G251_splice	AGFG2_uc003uvg.1_Splice_Site_p.W144_splice|AGFG2_uc010lgy.2_Splice_Site_p.A113_splice	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2						regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						TCCACCTACAGGCCAGACACC	0.338													50	137					0	0	1	0	0	
SLC12A9	56996	broad.mit.edu	37	7	100457805	100457805	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:100457805G>A	uc003uwp.2	+	9	1311	c.1169G>A	c.(1168-1170)CGA>CAA	p.R390Q	SLC12A9_uc003uwq.2_Missense_Mutation_p.R301Q|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Missense_Mutation_p.R126Q|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_Missense_Mutation_p.R126Q|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	390	Cytoplasmic (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTTGTGTCCCGAGGGGGAAAC	0.597													16	60					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	100609602	100609602	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:100609602G>T	uc003uxl.1	+	8	2834	c.2034G>T	c.(2032-2034)AGG>AGT	p.R678S	uc003uxm.1_5'Flank|uc003uxn.1_RNA|uc010lhn.1_Intron					SubName: Full=Intestinal mucin; Flags: Fragment;																		TCCACTGGAGGGCGCTGGTCG	0.741													5	13					0.000602214	0.000616663	1	1	0	
MUC17	140453	broad.mit.edu	37	7	100679976	100679976	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:100679976C>T	uc003uxp.1	+	3	5332	c.5279C>T	c.(5278-5280)CCG>CTG	p.P1760L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1760	Extracellular (Potential).|59 X approximate tandem repeats.|27.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGCACCACGCCGGTACTCAGT	0.507													119	389					0	0	1	0	0	
MUC17	140453	broad.mit.edu	37	7	100684965	100684965	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:100684965C>A	uc003uxp.1	+	3	10321	c.10268C>A	c.(10267-10269)CCT>CAT	p.P3423H	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3423	Extracellular (Potential).|55.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCAACAACTCCTGTGGACTCC	0.502													23	340					5.35356e-11	5.74095e-11	1	1	0	
CUX1	1523	broad.mit.edu	37	7	101845023	101845023	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:101845023C>T	uc003uyx.3	+	18	2484	c.2446C>T	c.(2446-2448)CGC>TGC	p.R816C	CUX1_uc003uys.3_Missense_Mutation_p.R827C|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	816					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TGAGGTGGGCCGCAGCGGTGC	0.672													6	27					0	0	1	0	0	
C7orf53	286006	broad.mit.edu	37	7	112127027	112127027	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:112127027C>T	uc011kmq.1	+	3	312	c.177C>T	c.(175-177)AGC>AGT	p.S59S	C7orf53_uc003vgl.2_RNA|C7orf53_uc003vgm.2_Silent_p.S59S	NM_001134468	NP_001127940	Q8N8F7	CG053_HUMAN	hypothetical protein LOC286006	59						integral to membrane				ovary(1)	1						GAAATGGAAGCCGGAGTCTGT	0.418													17	48					0	0	1	0	0	
ASZ1	136991	broad.mit.edu	37	7	117067496	117067496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:117067496G>A	uc003vjb.2	-	1	82	c.19C>T	c.(19-21)CGA>TGA	p.R7*	ASZ1_uc011kno.1_Nonsense_Mutation_p.R7*|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	7					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			GGCAGGCCTCGCAGCGCGCTC	0.692											OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	18	52					0	0	1	0	0	
ASZ1	136991	broad.mit.edu	37	7	117067501	117067501	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:117067501G>C	uc003vjb.2	-	1	77	c.14C>G	c.(13-15)GCG>GGG	p.A5G	ASZ1_uc011kno.1_Missense_Mutation_p.A5G|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	5					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			GCCTCGCAGCGCGCTCGCCGC	0.687											OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	15	52					0	0	1	0	0	
ASB15	142685	broad.mit.edu	37	7	123269054	123269054	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:123269054A>G	uc003vku.1	+	10	1298	c.1006A>G	c.(1006-1008)ACT>GCT	p.T336A	ASB15_uc003vkw.1_Missense_Mutation_p.T336A	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	336	ANK 6.				intracellular signal transduction					skin(2)|lung(1)	3						TGATGTCAACACTCTACTTGC	0.433													22	116					0	0	1	0	0	
ASB15	142685	broad.mit.edu	37	7	123269134	123269134	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:123269134C>T	uc003vku.1	+	10	1378	c.1086C>T	c.(1084-1086)GAC>GAT	p.D362D	ASB15_uc003vkw.1_Silent_p.D362D	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	362	ANK 7.				intracellular signal transduction					skin(2)|lung(1)	3						CTAATAATGACGTTCATTGCA	0.438													25	96					0	0	1	0	0	
FLNC	2318	broad.mit.edu	37	7	128470896	128470896	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:128470896C>T	uc003vnz.3	+	1	414	c.205C>T	c.(205-207)CGG>TGG	p.R69W	FLNC_uc003voa.3_Missense_Mutation_p.R69W	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	69	CH 1.|Actin-binding.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGACGGGCTCCGGCTCATCGC	0.622													15	36					0	0	1	0	0	
CPA4	51200	broad.mit.edu	37	7	129948150	129948150	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:129948150C>T	uc003vpr.2	+	8	753	c.706C>T	c.(706-708)CGA>TGA	p.R236*	CPA4_uc011kpd.1_Nonsense_Mutation_p.R203*|CPA4_uc011kpe.1_Nonsense_Mutation_p.R132*	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	236					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TTTTCAGAACCGATTATGGAG	0.557													16	48					0	0	1	0	0	
AKR1B10	57016	broad.mit.edu	37	7	134223007	134223007	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:134223007C>T	uc003vrr.2	+	8	1123	c.803C>T	c.(802-804)GCA>GTA	p.A268V		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	268	NADP.				cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						GTGACACCAGCACGCATTGTT	0.532													37	125					0	0	1	0	0	
C7orf49	78996	broad.mit.edu	37	7	134851523	134851523	+	Missense_Mutation	SNP	C	T	T	rs10237382		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:134851523C>T	uc003vsl.2	-	4	581	c.314G>A	c.(313-315)GGG>GAG	p.G105E	C7orf49_uc003vsh.2_Intron|C7orf49_uc003vsj.2_Missense_Mutation_p.G76E|C7orf49_uc003vsk.2_RNA|C7orf49_uc003vsm.2_RNA|C7orf49_uc003vsn.2_Missense_Mutation_p.G104E|C7orf49_uc003vso.2_Missense_Mutation_p.G50E	NM_024033	NP_076938	Q9BWK5	MRI_HUMAN	modulator of retrovirus infection	105						cytoplasm				large_intestine(1)|ovary(1)	2						ACTGCTGCTCCCAGAACTTGT	0.652													36	77					0	0	1	0	0	
TRIM24	8805	broad.mit.edu	37	7	138269680	138269680	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:138269680G>A	uc003vuc.2	+	19	3352	c.3137G>A	c.(3136-3138)CGC>CAC	p.R1046H	TRIM24_uc003vub.2_Missense_Mutation_p.R1012H	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	1046					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						ATTGAAGAACGCCAGTTGCTT	0.343													17	54					0	0	1	0	0	
MGAM	8972	broad.mit.edu	37	7	141721431	141721431	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:141721431G>A	uc003vwy.2	+	6	658	c.604G>A	c.(604-606)GTG>ATG	p.V202M		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	202	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CCACGAACACGTGCAGTCCTT	0.438													14	60					0	0	1	0	0	
TRPV6	55503	broad.mit.edu	37	7	142583219	142583219	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:142583219G>T	uc003wbx.1	-	1	259	c.43C>A	c.(43-45)CTA>ATA	p.L15I		NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	15	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					TTGCTCCATAGGCAGAGAATT	0.617													5	134					0.000602214	0.000616663	1	1	0	
Unknown	0	broad.mit.edu	37	7	143510077	143510077	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:143510077C>T	uc011ktn.1	+	4	1748	c.1734C>T	c.(1732-1734)ACC>ACT	p.T578T	uc011kto.1_RNA|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|LOC154761_uc003wdl.2_3'UTR|LOC154761_uc003wdm.2_3'UTR	NM_001130026	NP_001123498			hypothetical protein LOC285966 isoform B																		GCTGCCACACCGATGACCTTA	0.547													20	84					0	0	1	0	0	
ZNF786	136051	broad.mit.edu	37	7	148767808	148767808	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:148767808G>A	uc003wfh.2	-	4	2193	c.2056C>T	c.(2056-2058)CGC>TGC	p.R686C	ZNF786_uc011kuk.1_Missense_Mutation_p.R649C|ZNF786_uc003wfi.2_Missense_Mutation_p.R600C	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	686	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GCCTTCAGGCGGAAACTCTTG	0.557													36	117					0	0	1	0	0	
ZNF786	136051	broad.mit.edu	37	7	148768294	148768295	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:148768294_148768295GC>AA	uc003wfh.2	-	4	1706_1707	c.1569_1570GC>TT	c.(1567-1572)AAGCTC>AATTTC	p.523_524KL>NF	ZNF786_uc011kuk.1_Missense_Mutation_p.486_487KL>NF|ZNF786_uc003wfi.2_Missense_Mutation_p.437_438KL>NF	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	523_524	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TGCTCACGGAGCTTGCACTGGT	0.653													15	29					0	0	1	0	0	
ZNF777	27153	broad.mit.edu	37	7	149129661	149129661	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:149129661G>A	uc003wfv.2	-	6	1865	c.1702C>T	c.(1702-1704)CAC>TAC	p.H568Y		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	568	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TCCTTGATGTGGTTGCGCTGG	0.647													8	26					0	0	1	0	0	
GIMAP8	155038	broad.mit.edu	37	7	150164346	150164346	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:150164346G>A	uc003whj.2	+	2	890	c.560G>A	c.(559-561)CGC>CAC	p.R187H		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	187						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GAGCTCCTTCGCAAGGTTGAG	0.433													32	94					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151970829	151970829	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:151970829G>A	uc003wla.2	-	7	1192	c.973C>T	c.(973-975)CTG>TTG	p.L325L		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	325					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGACAAAGCAGGAAGATGTGA	0.398			N		medulloblastoma								15	258					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	152007084	152007084	+	Silent	SNP	G	A	A	rs143544942	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:152007084G>A	uc003wla.2	-	6	1035	c.816C>T	c.(814-816)AAC>AAT	p.N272N		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	272					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CTTTGTCCACGTTCACTAACA	0.393			N		medulloblastoma								11	54					0	0	1	0	0	
DPP6	1804	broad.mit.edu	37	7	154585857	154585857	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:154585857C>T	uc003wlk.2	+	11	1334	c.1205C>T	c.(1204-1206)GCG>GTG	p.A402V	DPP6_uc003wli.2_Missense_Mutation_p.A338V|DPP6_uc003wlm.2_Missense_Mutation_p.A340V|DPP6_uc011kvq.1_Missense_Mutation_p.A295V	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	402	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			CTGAACCGGGCGCAGAACGTG	0.632													7	14					0	0	1	0	0	
DPP6	1804	broad.mit.edu	37	7	154598810	154598810	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:154598810C>T	uc003wlk.2	+	16	1783	c.1654C>T	c.(1654-1656)CTC>TTC	p.L552F	DPP6_uc003wli.2_Missense_Mutation_p.L488F|DPP6_uc003wlm.2_Missense_Mutation_p.L490F|DPP6_uc011kvq.1_Missense_Mutation_p.L445F	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	552	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			CTTCTTCCTGCTCAAGTGCGA	0.607													34	82					0	0	1	0	0	
ARHGEF10	9639	broad.mit.edu	37	8	1893747	1893747	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:1893747G>A	uc003wpr.2	+	27	3501	c.3323G>A	c.(3322-3324)CGC>CAC	p.R1108H	ARHGEF10_uc003wps.2_Missense_Mutation_p.R1070H|ARHGEF10_uc010lre.2_Missense_Mutation_p.R759H	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	1133					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TCCACGCTCCGCCTTTTTCAC	0.622													19	58					0	0	1	0	0	
PINX1	54984	broad.mit.edu	37	8	10623027	10623027	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:10623027G>A	uc003wth.2	-	7	904	c.871C>T	c.(871-873)CTG>TTG	p.L291L	SOX7_uc011kwz.1_Intron|PINX1_uc003wti.2_3'UTR	NM_017884	NP_060354	Q96BK5	PINX1_HUMAN	PIN2-interacting protein 1	291	TBM.|Telomerase inhibitory domain (TID).			L->A: Abolishes interaction with TERF1.	mitotic metaphase plate congression|negative regulation of cell proliferation	chromosome, telomeric region|condensed chromosome kinetochore|mitochondrion|nuclear chromosome|nucleolus|spindle	protein binding|telomerase inhibitor activity|telomeric RNA binding			lung(1)|kidney(1)|skin(1)	3				Kidney(29;0.0595)|COAD - Colon adenocarcinoma(149;0.105)|KIRC - Kidney renal clear cell carcinoma(542;0.201)		TTGGGCTTCAGGGTGAAGTCC	0.537													5	55					0	0	1	0	0	
XKR6	286046	broad.mit.edu	37	8	11058331	11058331	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:11058331G>A	uc003wtk.1	-	1	545	c.518C>T	c.(517-519)TCG>TTG	p.S173L		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	173	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		CACCAGCAGCGACGGCACCAG	0.692													25	86					0	0	1	0	0	
FGL1	2267	broad.mit.edu	37	8	17722224	17722224	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:17722224G>T	uc003wxx.2	-	9	1140	c.816C>A	c.(814-816)AGC>AGA	p.S272R	FGL1_uc003wxy.2_Missense_Mutation_p.S272R|FGL1_uc003wxz.2_Missense_Mutation_p.S271R|FGL1_uc003wya.2_Missense_Mutation_p.S272R|FGL1_uc003wyb.2_Missense_Mutation_p.S272R|FGL1_uc003wyc.2_Missense_Mutation_p.S272R|FGL1_uc003wyd.2_RNA|FGL1_uc003wye.2_Missense_Mutation_p.S322R|FGL1_uc003wyf.2_Missense_Mutation_p.S242R	NM_201553	NP_963847	Q08830	FGL1_HUMAN	fibrinogen-like 1 precursor	272	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding				0				Colorectal(111;0.0573)|COAD - Colon adenocarcinoma(73;0.215)		TGTAGGGGCCGCTGTAGTATA	0.428													5	44					0.184627	0.184627	1	1	0	
ATP6V1B2	526	broad.mit.edu	37	8	20077788	20077788	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:20077788C>T	uc003wzp.2	+	14	1625	c.1411C>T	c.(1411-1413)CGC>TGC	p.R471C	ATP6V1B2_uc003wzq.1_RNA	NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	471					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TTACGAAAATCGCACTGTCTT	0.393													15	103					0	0	1	0	0	
EGR3	1960	broad.mit.edu	37	8	22548121	22548121	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:22548121C>T	uc003xcm.1	-	2	1387	c.1029G>A	c.(1027-1029)GCG>GCA	p.A343A	EGR3_uc011kzn.1_Silent_p.A305A|EGR3_uc011kzo.1_Silent_p.A289A	NM_004430	NP_004421	Q06889	EGR3_HUMAN	early growth response 3	343	C2H2-type 3.				circadian rhythm|muscle organ development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Prostate(55;0.0421)|Breast(100;0.102)		Colorectal(74;0.0145)|BRCA - Breast invasive adenocarcinoma(99;0.053)|COAD - Colon adenocarcinoma(73;0.0608)		CGTCGCTGCGCGCAAACTTGC	0.652													30	111					0	0	1	0	0	
ENTPD4	9583	broad.mit.edu	37	8	23290496	23290496	+	Silent	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:23290496G>C	uc003xdl.2	-	13	1958	c.1794C>G	c.(1792-1794)GCC>GCG	p.A598A	ENTPD4_uc011kzu.1_Intron|ENTPD4_uc003xdm.2_Silent_p.A590A	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	598	Cytoplasmic (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		AGAGGGCGGCGGCCGAGCTGC	0.642													7	28					0	0	1	0	0	
C8orf80	389643	broad.mit.edu	37	8	27922054	27922054	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:27922054G>A	uc003xgm.3	-	7	1049	c.906C>T	c.(904-906)GAC>GAT	p.D302D		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	302						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		TCCACATCTCGTCCCTCTTGC	0.493													12	45					0	0	1	0	0	
HMBOX1	79618	broad.mit.edu	37	8	28908656	28908656	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:28908656C>T	uc003xhd.3	+	10	1589	c.1247C>T	c.(1246-1248)GCC>GTC	p.A416V	HMBOX1_uc003xhc.3_Intron|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.A416V|HMBOX1_uc011lay.1_Missense_Mutation_p.A439V|HMBOX1_uc003xhf.2_Missense_Mutation_p.A402V|HMBOX1_uc003xhg.2_3'UTR	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	416					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		AAGACAGAGGCCCTGGATGAT	0.473													4	86					0	0	1	0	0	
WRN	7486	broad.mit.edu	37	8	30977901	30977901	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:30977901G>A	uc003xio.3	+	21	3379	c.2591G>A	c.(2590-2592)TGT>TAT	p.C864Y	WRN_uc010lvk.2_Missense_Mutation_p.C331Y	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	864	Helicase C-terminal.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CAAAGTTCTTGTCACGTCCTC	0.388			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				20	66					0	0	1	0	0	
RAB11FIP1	80223	broad.mit.edu	37	8	37732311	37732311	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:37732311C>A	uc003xkm.1	-	3	1388	c.1344G>T	c.(1342-1344)AAG>AAT	p.K448N	RAB11FIP1_uc010lvz.1_Missense_Mutation_p.K296N|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.K448N|RAB11FIP1_uc003xkl.1_5'Flank|RAB11FIP1_uc003xko.1_5'Flank|RAB11FIP1_uc003xkp.1_Missense_Mutation_p.K296N	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	448					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CTTCACTGCCCTTAGCCACAT	0.572													62	289					8.65233e-54	9.63678e-54	1	1	0	
FGFR1	2260	broad.mit.edu	37	8	38275752	38275752	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:38275752C>T	uc003xlp.2	-	11	2366	c.1424G>A	c.(1423-1425)CGG>CAG	p.R475Q	FGFR1_uc010lwf.2_RNA|FGFR1_uc011lbo.1_Missense_Mutation_p.R473Q|FGFR1_uc011lbp.1_Missense_Mutation_p.R386Q|FGFR1_uc011lbq.1_Missense_Mutation_p.R384Q|FGFR1_uc010lwk.2_Missense_Mutation_p.R465Q	NM_023110	NP_075598	P11362	FGFR1_HUMAN	fibroblast growth factor receptor 1 isoform 1	475	Cytoplasmic (Potential).				axon guidance|cell growth|insulin receptor signaling pathway|MAPKKK cascade|positive regulation of cell proliferation|skeletal system development	extracellular region|integral to plasma membrane|membrane fraction	ATP binding|fibroblast growth factor receptor activity|heparin binding|protein homodimerization activity			lung(5)|central_nervous_system(5)|stomach(2)|breast(2)|ovary(1)	15	all_cancers(2;9.05e-47)|all_epithelial(2;2.64e-50)|all_lung(3;1.71e-23)|Lung NSC(2;3.61e-23)|Colorectal(12;0.000442)	Breast(189;1.48e-05)|all_lung(54;0.00354)|Lung NSC(58;0.0138)|Hepatocellular(245;0.065)	Epithelial(3;3.96e-34)|all cancers(3;3.06e-30)|BRCA - Breast invasive adenocarcinoma(5;2.28e-21)|COAD - Colon adenocarcinoma(9;0.24)		Palifermin(DB00039)	TTACCTGTCCCGAGGCAGCTC	0.532		1	T	BCR|FOP|ZNF198|CEP1	MPD|NHL		Pfeiffer syndrome|Kallman syndrome						37	144					0	0	1	0	0	
RNF5P1	286140	broad.mit.edu	37	8	38458432	38458432	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:38458432C>T	uc003xly.2	-	1	344	c.287G>A	c.(286-288)CGC>CAC	p.R96H		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						GCCCTGGGGGCGGGGTGGAGT	0.572													13	74					0	0	1	0	0	
PLEKHA2	59339	broad.mit.edu	37	8	38810883	38810883	+	Silent	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:38810883T>G	uc003xmi.3	+	9	1005	c.771T>G	c.(769-771)TCT>TCG	p.S257S	PLEKHA2_uc011lce.1_Silent_p.S207S	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	257	PH 2.				positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			TGGTCAAGTCTGGGTAATTGT	0.428													31	140					0	0	1	0	0	
HTRA4	203100	broad.mit.edu	37	8	38832633	38832633	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:38832633G>A	uc003xmj.2	+	2	665	c.550G>A	c.(550-552)GTG>ATG	p.V184M		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	184					proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			GGTGGTTCACGTGCAGCTGTG	0.577													51	186					0	0	1	0	0	
SNAI2	6591	broad.mit.edu	37	8	49833819	49833819	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:49833819C>T	uc003xqp.2	-	1	170	c.6G>A	c.(4-6)CCG>CCA	p.P2P		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	2					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				GGAAGGAGCGCGGCATCTTGC	0.592													27	113					0	0	1	0	0	
RB1CC1	9821	broad.mit.edu	37	8	53548618	53548618	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:53548618T>C	uc003xre.3	-	19	4907	c.4349A>G	c.(4348-4350)CAT>CGT	p.H1450R	RB1CC1_uc003xrf.3_Missense_Mutation_p.H1450R	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	1450	Potential.				autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				AGACAACATATGAATATTTTC	0.269													12	44					0	0	1	0	0	
CHD7	55636	broad.mit.edu	37	8	61763086	61763086	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:61763086C>T	uc003xue.2	+	26	5916	c.5439C>T	c.(5437-5439)CCC>CCT	p.P1813P		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1813					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GAGCTGACCCCGCGCTGTGCT	0.542													5	26					0	0	1	0	0	
ASPH	444	broad.mit.edu	37	8	62415991	62415991	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:62415991C>T	uc003xuj.2	-	25	2473	c.2204G>A	c.(2203-2205)CGG>CAG	p.R735Q	ASPH_uc011leg.1_Missense_Mutation_p.R706Q	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	735	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	GAATATCAGCCGGAAAGATGA	0.507													6	40					0	0	1	0	0	
TRPA1	8989	broad.mit.edu	37	8	72945932	72945932	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:72945932C>A	uc003xza.2	-	23	2990	c.2815G>T	c.(2815-2817)GCA>TCA	p.A939S	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	939	Extracellular (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	ACAAGTTGTGCAAAGGACAGA	0.353													13	52					2.27111e-07	2.38511e-07	1	1	0	
TRPA1	8989	broad.mit.edu	37	8	72948688	72948688	+	Missense_Mutation	SNP	C	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:72948688C>A	uc003xza.2	-	21	2565	c.2390G>T	c.(2389-2391)AGG>ATG	p.R797M	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	797	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AAAATAATTCCTTTTCTGGGA	0.348													10	30					1.58986e-06	1.65663e-06	1	1	0	
GDAP1	54332	broad.mit.edu	37	8	75276516	75276516	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:75276516G>A	uc003yah.2	+	6	1070	c.991G>A	c.(991-993)GGA>AGA	p.G331R	GDAP1_uc011lfj.1_Missense_Mutation_p.G216R|GDAP1_uc003yai.2_Missense_Mutation_p.G263R	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	331						cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			TTTGCTTGCAGGAGTGGGATA	0.443													16	90					0	0	1	0	0	
DCAF4L2	138009	broad.mit.edu	37	8	88885496	88885496	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:88885496A>G	uc003ydz.2	-	1	801	c.704T>C	c.(703-705)ATG>ACG	p.M235T		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	235										ovary(1)	1						CAAAGGAGTCATGATTGCAAA	0.537													27	129					0	0	1	0	0	
LRP12	29967	broad.mit.edu	37	8	105503644	105503644	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:105503644G>A	uc003yma.2	-	7	1932	c.1837C>T	c.(1837-1839)CGT>TGT	p.R613C	LRP12_uc003ymb.2_Missense_Mutation_p.R594C|LRP12_uc003ylz.2_Missense_Mutation_p.R19C	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	613	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGAATGACGTGATCTTGCA	0.453													13	75					0	0	1	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110477474	110477474	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:110477474G>T	uc003yne.2	+	49	8517	c.8413G>T	c.(8413-8415)GGG>TGG	p.G2805W		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2805	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCACTTACAGGTAATGTTAT	0.284										HNSCC(38;0.096)			3	36					0.004672	0.00473862	1	1	0	
CSMD3	114788	broad.mit.edu	37	8	113529433	113529433	+	Missense_Mutation	SNP	C	T	T	rs138068999		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:113529433C>T	uc003ynu.2	-	28	4745	c.4586G>A	c.(4585-4587)CGT>CAT	p.R1529H	CSMD3_uc003yns.2_Missense_Mutation_p.R801H|CSMD3_uc003ynt.2_Missense_Mutation_p.R1489H|CSMD3_uc011lhx.1_Missense_Mutation_p.R1425H	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1529	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCCTGGGTCACGACACGCAGT	0.413										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	54					0	0	1	0	0	
NOV	4856	broad.mit.edu	37	8	120435322	120435322	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:120435322G>T	uc003yoq.2	+	5	1245	c.1024G>T	c.(1024-1026)GAG>TAG	p.E342*		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	342					regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TAAGAACAATGAGGCCTTCCT	0.532													40	215					7.77092e-38	8.63705e-38	1	1	0	
COL14A1	7373	broad.mit.edu	37	8	121292217	121292217	+	Silent	SNP	G	A	A	rs78388021	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:121292217G>A	uc003yox.2	+	29	3790	c.3525G>A	c.(3523-3525)TCG>TCA	p.S1175S	COL14A1_uc003yoz.2_Silent_p.S140S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1175	VWFA 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAGATTACTCGGAGTTGGTTA	0.408													16	63					0	0	1	0	0	
ATAD2	29028	broad.mit.edu	37	8	124338217	124338217	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:124338217C>T	uc003yqh.3	-	26	4026	c.3918G>A	c.(3916-3918)CAG>CAA	p.Q1306Q	ATAD2_uc011lii.1_Silent_p.Q1097Q|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TGAGCTGCTGCTGTTCTACCT	0.378													4	83					0	0	1	0	0	
ATAD2	29028	broad.mit.edu	37	8	124382167	124382167	+	Missense_Mutation	SNP	A	T	T	rs149531312	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:124382167A>T	uc003yqh.3	-	7	933	c.825T>A	c.(823-825)GAT>GAA	p.D275E	ATAD2_uc011lii.1_Missense_Mutation_p.D66E|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.D275E	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	275	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			cttcatcatcatcatcatcat	0.179													7	26					0	0	1	0	0	
WDYHV1	55093	broad.mit.edu	37	8	124449545	124449545	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:124449545C>T	uc003yqn.1	+	5	604	c.479C>T	c.(478-480)CCG>CTG	p.P160L	WDYHV1_uc011lij.1_Missense_Mutation_p.P100L|WDYHV1_uc003yqo.1_RNA	NM_018024	NP_060494	Q96HA8	NTAQ1_HUMAN	WDYHV motif containing 1	160					protein modification process	cytosol|nucleus	protein binding|protein N-terminal glutamine amidohydrolase activity			ovary(1)|skin(1)	2						AGAGAGCCTCCGCCGCCATAT	0.468													11	35					0	0	1	0	0	
ANXA13	312	broad.mit.edu	37	8	124696923	124696923	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:124696923C>T	uc003yqu.2	-	10	831	c.758G>A	c.(757-759)CGT>CAT	p.R253H	ANXA13_uc003yqt.2_Missense_Mutation_p.R294H	NM_004306	NP_004297	P27216	ANX13_HUMAN	annexin A13 isoform a	253					cell differentiation	plasma membrane	calcium ion binding|calcium-dependent phospholipid binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(37;2.06e-11)|Ovarian(258;0.00579)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00288)			CTTGTACAGACGTTCAGCAAA	0.517													22	115					0	0	1	0	0	
FAM91A1	157769	broad.mit.edu	37	8	124810440	124810440	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:124810440A>G	uc003yqv.2	+	16	1583	c.1522A>G	c.(1522-1524)ACC>GCC	p.T508A	FAM91A1_uc011lik.1_Missense_Mutation_p.T508A|FAM91A1_uc011lil.1_Missense_Mutation_p.T266A	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	508										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			GGCTCCCCTCACCAATGAAAT	0.478													17	92					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	134025948	134025948	+	Silent	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:134025948G>T	uc003ytw.2	+	37	6542	c.6501G>T	c.(6499-6501)CTG>CTT	p.L2167L	TG_uc010mdw.2_Silent_p.L926L|TG_uc011ljb.1_Silent_p.L536L|TG_uc011ljc.1_Silent_p.L300L	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2167	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CACATAGTCTGCAGGGTCAGA	0.532													18	55					7.07596e-05	7.31594e-05	1	1	0	
FAM135B	51059	broad.mit.edu	37	8	139153505	139153505	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:139153505C>T	uc003yuy.2	-	17	3897	c.3726G>A	c.(3724-3726)ACG>ACA	p.T1242T	FAM135B_uc003yux.2_Silent_p.T1143T|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1242										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTGACAGGAACGTGTGGAGTT	0.507										HNSCC(54;0.14)			25	107					0	0	1	0	0	
EIF2C2	27161	broad.mit.edu	37	8	141566043	141566043	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:141566043G>A	uc003yvn.2	-	10	1261	c.1221C>T	c.(1219-1221)GAC>GAT	p.D407D	EIF2C2_uc010men.2_Silent_p.D330D|EIF2C2_uc010meo.2_Silent_p.D407D	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	407					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			GCCCAGTCACGTCTGTCATCT	0.577													20	79					0	0	1	0	0	
FLJ43860	389690	broad.mit.edu	37	8	142458045	142458045	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:142458045C>T	uc003ywi.2	-	23	2862	c.2781G>A	c.(2779-2781)AAG>AAA	p.K927K	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	927							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGGCCTGCTGCTTGGGCTAGG	0.652													3	24					0	0	1	0	0	
ZNF696	79943	broad.mit.edu	37	8	144378347	144378347	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144378347G>A	uc003yxy.3	+	3	911	c.502G>A	c.(502-504)GTG>ATG	p.V168M		NM_030895	NP_112157	Q9H7X3	ZN696_HUMAN	zinc finger protein 696	168	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			CAGCTCGCACGTGGTCCGGCA	0.687													3	23					0	0	1	0	0	
TOP1MT	116447	broad.mit.edu	37	8	144391637	144391637	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144391637T>C	uc003yxz.2	-	14	1799	c.1780A>G	c.(1780-1782)ATG>GTG	p.M594V	TOP1MT_uc011lkd.1_Missense_Mutation_p.M496V|TOP1MT_uc011lke.1_Missense_Mutation_p.M496V|TOP1MT_uc010mfb.2_Missense_Mutation_p.M496V|TOP1MT_uc011lkf.1_3'UTR	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	594					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	TCTCCTGCCATGGCGAGAGCC	0.502													21	76					0	0	1	0	0	
ZC3H3	23144	broad.mit.edu	37	8	144620765	144620765	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144620765G>A	uc003yyd.2	-	2	801	c.772C>T	c.(772-774)CAG>TAG	p.Q258*		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	258					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CCAAGGAGCTGTGGAGCACAG	0.672													17	82					0	0	1	0	0	
SCRIB	23513	broad.mit.edu	37	8	144877464	144877464	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144877464C>T	uc003yzp.1	-	26	3761	c.3754G>A	c.(3754-3756)GAG>AAG	p.E1252K	SCRIB_uc003yzn.1_5'UTR|SCRIB_uc003yzo.1_Missense_Mutation_p.E1252K	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1252					activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			TCTGTGGCCTCGGGCCCCCAG	0.687													40	109					0	0	1	0	0	
NRBP2	340371	broad.mit.edu	37	8	144918173	144918173	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144918173G>A	uc011lkt.1	-	16	1485	c.1345C>T	c.(1345-1347)CGG>TGG	p.R449W	NRBP2_uc003yzv.2_Missense_Mutation_p.R206W|NRBP2_uc003yzz.1_Missense_Mutation_p.R99W|NRBP2_uc003yzw.2_Missense_Mutation_p.R241W|NRBP2_uc010mfl.2_Missense_Mutation_p.R241W|NRBP2_uc010mfm.2_Missense_Mutation_p.R206W|NRBP2_uc011lks.1_Missense_Mutation_p.R206W|NRBP2_uc003yzy.2_Missense_Mutation_p.R206W	NM_178564	NP_848659	Q9NSY0	NRBP2_HUMAN	nuclear receptor binding protein 2	449					negative regulation of neuron apoptosis|neuron differentiation	cytoplasm	ATP binding|protein kinase activity			central_nervous_system(2)	2	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			CGGTGCAGCCGGTCTTCCAGC	0.741													10	14					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144994837	144994837	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:144994837G>A	uc003zaf.1	-	32	9733	c.9563C>T	c.(9562-9564)TCC>TTC	p.S3188F	PLEC_uc003zab.1_Missense_Mutation_p.S3051F|PLEC_uc003zac.1_Missense_Mutation_p.S3055F|PLEC_uc003zad.2_Missense_Mutation_p.S3051F|PLEC_uc003zae.1_Missense_Mutation_p.S3019F|PLEC_uc003zag.1_Missense_Mutation_p.S3029F|PLEC_uc003zah.2_Missense_Mutation_p.S3037F|PLEC_uc003zaj.2_Missense_Mutation_p.S3078F	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3188	Globular 2.|Plectin 7.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGCCATGTCGGATGGCAGCAG	0.667													18	69					0	0	1	0	0	
SCRT1	83482	broad.mit.edu	37	8	145557015	145557015	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:145557015C>T	uc003zbw.1	-	2	991	c.879G>A	c.(877-879)GCG>GCA	p.A293A		NM_031309	NP_112599	Q9BWW7	SCRT1_HUMAN	scratch	293	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.35e-39)|all cancers(56;1.37e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			TCTGCATGTGCGCGCGCAGGT	0.637													5	26					0	0	1	0	0	
KIFC2	90990	broad.mit.edu	37	8	145693130	145693130	+	Missense_Mutation	SNP	G	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:145693130G>C	uc003zcz.2	+	6	714	c.649G>C	c.(649-651)GAG>CAG	p.E217Q	CYHR1_uc003zcv.2_5'Flank|CYHR1_uc003zcw.2_5'Flank|CYHR1_uc003zcx.2_5'Flank|CYHR1_uc003zcy.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	217	Potential.|Gln-rich.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GGAACAGCAGGAGGAGGAGTT	0.637											OREG0019057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	60					0	0	1	0	0	
RECQL4	9401	broad.mit.edu	37	8	145740361	145740361	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:145740361T>C	uc003zdj.2	-	9	1611	c.1579A>G	c.(1579-1581)ACG>GCG	p.T527A		NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	527	Helicase ATP-binding.				DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			ACGACCAACGTGAGGCAGGGG	0.637			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				7	30					0	0	1	0	0	
CBWD1	55871	broad.mit.edu	37	9	164038	164038	+	Splice_Site	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:164038C>G	uc003zga.3	-	5	537	c.431_splice	c.e5-1	p.G144_splice	CBWD1_uc010mgs.2_Splice_Site|CBWD1_uc003zgb.3_Splice_Site_p.G108_splice|CBWD1_uc003zgc.3_Splice_Site_p.G144_splice|CBWD1_uc011llr.1_Splice_Site_p.G108_splice	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1								ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCACTGCACCTGAAAATATA	0.269													15	70					0	0	1	0	0	
VLDLR	7436	broad.mit.edu	37	9	2644970	2644970	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:2644970C>T	uc003zhk.1	+	9	1597	c.1200C>T	c.(1198-1200)TGC>TGT	p.C400C	VLDLR_uc003zhl.1_Silent_p.C400C|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Silent_p.C359C	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	400	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		TTGATGAATGCCAAAATCCAG	0.428													39	121					0	0	1	0	0	
CNTLN	54875	broad.mit.edu	37	9	17457549	17457549	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:17457549C>T	uc003zmz.2	+	19	3165	c.3139C>T	c.(3139-3141)CGG>TGG	p.R1047W	CNTLN_uc003zmy.2_Missense_Mutation_p.R1048W|CNTLN_uc010mio.2_Missense_Mutation_p.R727W	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1048	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GGCTGGGCTTCGGAAAGAAAA	0.269													17	71					0	0	1	0	0	
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:20414340G>A	uc003zoe.2	-	5	763	c.504C>T	c.(502-504)AGC>AGT	p.S168S	MLLT3_uc011lne.1_Silent_p.S136S|MLLT3_uc011lnf.1_Silent_p.S165S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A130V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.144			T	MLL	ALL								8	43					0	0	1	0	0	
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:20414343A>G	uc003zoe.2	-	5	760	c.501T>C	c.(499-501)AGT>AGC	p.S167S	MLLT3_uc011lne.1_Silent_p.S135S|MLLT3_uc011lnf.1_Silent_p.S164S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.V129A	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.139			T	MLL	ALL								22	31					0	0	1	0	0	
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:20414346G>A	uc003zoe.2	-	5	757	c.498C>T	c.(496-498)AGC>AGT	p.S166S	MLLT3_uc011lne.1_Silent_p.S134S|MLLT3_uc011lnf.1_Silent_p.S163S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.A128V	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	166	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.134			T	MLL	ALL								13	38					0	0	1	0	0	
TEK	7010	broad.mit.edu	37	9	27217741	27217741	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:27217741C>T	uc003zqi.3	+	19	3489	c.3047C>T	c.(3046-3048)ACA>ATA	p.T1016I	TEK_uc011lno.1_Missense_Mutation_p.T973I|TEK_uc011lnp.1_Missense_Mutation_p.T868I	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	1016	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AGTGTGTACACAACCAACAGT	0.428													19	60					0	0	1	0	0	
NOL6	65083	broad.mit.edu	37	9	33469244	33469244	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:33469244G>A	uc003zsz.2	-	6	924	c.823C>T	c.(823-825)CGC>TGC	p.R275C	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Missense_Mutation_p.R275C|NOL6_uc010mjv.2_Missense_Mutation_p.R275C|NOL6_uc011lob.1_Missense_Mutation_p.R215C|NOL6_uc003ztb.1_Missense_Mutation_p.R275C	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	275					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		CAGGCAGAGCGCACATTGTTC	0.617													36	77					0	0	1	0	0	
STOML2	30968	broad.mit.edu	37	9	35101939	35101939	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:35101939C>T	uc003zwi.2	-	4	367	c.304G>A	c.(304-306)GAT>AAT	p.D102N	STOML2_uc003zwh.2_5'UTR|STOML2_uc003zwj.2_5'UTR|STOML2_uc011lou.1_Missense_Mutation_p.D102N|STOML2_uc003zwk.2_Missense_Mutation_p.D51N	NM_013442	NP_038470	Q9UJZ1	STML2_HUMAN	stomatin (EPB72)-like 2	102						cytoskeleton	receptor binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGGACTCCATCGATTTGCAGA	0.473													20	63					0	0	1	0	0	
DCAF10	79269	broad.mit.edu	37	9	37861193	37861193	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:37861193C>T	uc004aao.2	+	7	1442	c.1368C>T	c.(1366-1368)CGC>CGT	p.R456R	DCAF10_uc010mlz.2_Silent_p.R283R|DCAF10_uc004aap.2_Silent_p.R107R	NM_024345	NP_077321	Q5QP82	DCA10_HUMAN	WD repeat domain 32	456						CUL4 RING ubiquitin ligase complex				central_nervous_system(1)	1						TCTCACCTCGCTGTTCTCTAC	0.483													34	95					0	0	1	0	0	
PGM5	5239	broad.mit.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:70993145A>G	uc004agr.2	+	2	521	c.292A>G	c.(292-294)ATC>GTC	p.I98V		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	98					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ACAGAATGGCATCTTGTCGAC	0.478													12	84					0	0	1	0	0	
VPS13A	23230	broad.mit.edu	37	9	79910753	79910753	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:79910753G>A	uc004akr.2	+	33	4063	c.3803G>A	c.(3802-3804)CGA>CAA	p.R1268Q	VPS13A_uc004akp.3_Missense_Mutation_p.R1268Q|VPS13A_uc004akq.3_Missense_Mutation_p.R1268Q|VPS13A_uc004aks.2_Missense_Mutation_p.R1229Q|VPS13A_uc010mpo.1_5'UTR	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1268	TPR 4.				Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGTGAAATGCGACTATACAGG	0.348													9	44					0	0	1	0	0	
GNAQ	2776	broad.mit.edu	37	9	80430566	80430566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:80430566G>A	uc004akw.2	-	3	483	c.442C>T	c.(442-444)CGA>TGA	p.R148*	GNAQ_uc011lso.1_Translation_Start_Site	NM_002072	NP_002063	P50148	GNAQ_HUMAN	guanine nucleotide binding protein (G protein),	148					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|glutamate signaling pathway|negative regulation of protein kinase activity|platelet activation|protein ADP-ribosylation|protein stabilization|regulation of action potential|regulation of catenin import into nucleus	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activator activity|GTPase activity|signal transducer activity			eye(136)|skin(44)|meninges(11)|ovary(1)|kidney(1)	193						TATTCTCGTCGTCTATCATAG	0.378			Mis		uveal melanoma								17	36					0	0	1	0	0	
AGTPBP1	23287	broad.mit.edu	37	9	88272486	88272486	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:88272486C>T	uc011ltd.1	-	9	806	c.773G>A	c.(772-774)CGC>CAC	p.R258H	AGTPBP1_uc011ltc.1_Missense_Mutation_p.R156H|AGTPBP1_uc010mqc.2_Missense_Mutation_p.R258H|AGTPBP1_uc011lte.1_Missense_Mutation_p.R310H	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	258					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						GTTATCATGGCGGTGCCAATC	0.353													18	29					0	0	1	0	0	
OMD	4958	broad.mit.edu	37	9	95179158	95179158	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:95179158G>T	uc004asd.3	-	2	1052	c.683C>A	c.(682-684)CCT>CAT	p.P228H	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron	NM_005014	NP_005005	Q99983	OMD_HUMAN	osteomodulin precursor	228	LRR 6.				cell adhesion	proteinaceous extracellular matrix				ovary(2)	2						CAAACCAGGAGGCATTGATTC	0.328			T	USP6	aneurysmal bone cysts								28	92					2.08457e-15	2.26731e-15	1	1	0	
C9orf129	445577	broad.mit.edu	37	9	96080728	96080728	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:96080728C>T	uc010mre.2	-	5	907	c.543G>A	c.(541-543)CCG>CCA	p.P181P	WNK2_uc011lud.1_3'UTR|WNK2_uc004atj.2_Intron|WNK2_uc004atk.2_3'UTR	NM_001098808	NP_001092278	Q5T035	CI129_HUMAN	hypothetical protein LOC445577	181										ovary(1)	1						GGCACACTGGCGGAGCTGCTT	0.612													17	96					0	0	1	0	0	
BARX1	56033	broad.mit.edu	37	9	96715033	96715033	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:96715033C>T	uc010mrh.2	-	3	758	c.578G>A	c.(577-579)CGG>CAG	p.R193Q	BARX1_uc004aud.2_Missense_Mutation_p.R39Q	NM_021570	NP_067545	Q9HBU1	BARX1_HUMAN	BARX homeobox 1	193	Homeobox.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTTCATCCTCCGATTCTGGTA	0.572													18	43					0	0	1	0	0	
TBC1D2	55357	broad.mit.edu	37	9	101014205	101014205	+	Missense_Mutation	SNP	C	T	T	rs140114775	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:101014205C>T	uc011lvb.1	-	2	553	c.373G>A	c.(373-375)GCC>ACC	p.A125T	TBC1D2_uc004ayq.2_Missense_Mutation_p.A125T|TBC1D2_uc004ayr.2_Intron|TBC1D2_uc004ayo.3_Missense_Mutation_p.A125T	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	125	PH.|Interaction with CADH1.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		TGCTTGGTGGCGGCCTGAGAA	0.607													19	66					0	0	1	0	0	
ZNF462	58499	broad.mit.edu	37	9	109689884	109689884	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:109689884G>A	uc004bcz.2	+	3	3980	c.3691G>A	c.(3691-3693)GCC>ACC	p.A1231T	ZNF462_uc010mto.2_Missense_Mutation_p.A1079T|ZNF462_uc004bda.2_Missense_Mutation_p.A1079T	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1231					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GCAGCATACGGCCACCATTCG	0.537													82	193					0	0	1	0	0	
ZFP37	7539	broad.mit.edu	37	9	115806463	115806463	+	Silent	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:115806463A>G	uc004bgm.1	-	4	463	c.435T>C	c.(433-435)ACT>ACC	p.T145T	ZFP37_uc011lwz.1_Silent_p.T160T|ZFP37_uc011lxa.1_Silent_p.T146T	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	145						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCTTAGCTTGAGTTTTCTTCT	0.353													25	107					0	0	1	0	0	
ZNF618	114991	broad.mit.edu	37	9	116811801	116811801	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:116811801C>T	uc004bid.2	+	15	2318	c.2219C>T	c.(2218-2220)ACG>ATG	p.T740M	ZNF618_uc004bic.2_Missense_Mutation_p.T647M|ZNF618_uc011lxi.1_Missense_Mutation_p.T707M|ZNF618_uc011lxj.1_Missense_Mutation_p.T708M|ZNF618_uc010mvb.2_Missense_Mutation_p.T330M	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	740					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCATCCTGACGCCGGTGAAG	0.612													6	21					0	0	1	0	0	
TNC	3371	broad.mit.edu	37	9	117849200	117849200	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:117849200G>A	uc004bjj.3	-	3	1172	c.810C>T	c.(808-810)TGC>TGT	p.C270C	TNC_uc010mvf.2_Silent_p.C270C	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	270	EGF-like 4.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						AGCCATCGTGGCACACACACA	0.562													21	83					0	0	1	0	0	
ASTN2	23245	broad.mit.edu	37	9	119495677	119495677	+	Splice_Site	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:119495677C>T	uc004bjs.1	-	14	2622	c.2521_splice	c.e14+1	p.G841_splice	ASTN2_uc004bjr.1_Splice_Site_p.G837_splice|ASTN2_uc004bjt.1_Splice_Site_p.G790_splice	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c							integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						ATGTGTCTTACCAGTGAGCAG	0.612													54	216					0	0	1	0	0	
TRAF1	7185	broad.mit.edu	37	9	123673661	123673661	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:123673661C>T	uc004bku.1	-	6	1408	c.836G>A	c.(835-837)CGG>CAG	p.R279Q	TRAF1_uc011lyg.1_Missense_Mutation_p.R157Q|TRAF1_uc010mvl.1_Missense_Mutation_p.R279Q	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	279	MATH.				apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						CTCATGGCACCGCCTGGTGAC	0.622													8	48					0	0	1	0	0	
MAPKAP1	79109	broad.mit.edu	37	9	128347904	128347904	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:128347904C>T	uc004bpv.2	-	5	934	c.601G>A	c.(601-603)GCC>ACC	p.A201T	MAPKAP1_uc011lzt.1_Missense_Mutation_p.A4T|MAPKAP1_uc010mwz.2_RNA|MAPKAP1_uc011lzu.1_Missense_Mutation_p.A4T|MAPKAP1_uc011lzv.1_Missense_Mutation_p.A4T|MAPKAP1_uc004bpw.2_Missense_Mutation_p.A9T|MAPKAP1_uc004bpx.2_Missense_Mutation_p.A9T|MAPKAP1_uc004bpy.2_Missense_Mutation_p.A201T|MAPKAP1_uc004bpz.2_Missense_Mutation_p.A201T|MAPKAP1_uc010mxa.2_RNA|MAPKAP1_uc010mxb.1_Missense_Mutation_p.A4T|MAPKAP1_uc004bqa.2_Missense_Mutation_p.A201T|MAPKAP1_uc010mxc.1_Missense_Mutation_p.A73T	NM_001006617	NP_001006618	Q9BPZ7	SIN1_HUMAN	mitogen-activated protein kinase associated	201					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|response to stress|T cell costimulation	cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	Ras GTPase binding			ovary(2)|lung(2)	4						TGCACCCTGGCGCTGGCCATT	0.542													26	86					0	0	1	0	0	
METTL11A	28989	broad.mit.edu	37	9	132397705	132397705	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:132397705G>A	uc004byd.1	+	4	828	c.634G>A	c.(634-636)GAT>AAT	p.D212N	METTL11A_uc010myw.1_RNA|METTL11A_uc011mbs.1_3'UTR|ASB6_uc004bye.1_3'UTR|ASB6_uc004byf.1_3'UTR|ASB6_uc004byg.1_3'UTR|ASB6_uc011mbt.1_3'UTR|ASB6_uc010myx.1_3'UTR	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	212					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						GAACCTCCCCGATGAGATCTA	0.632													43	119					0	0	1	0	0	
PPAPDC3	84814	broad.mit.edu	37	9	134165625	134165625	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:134165625G>A	uc004cal.2	+	1	545	c.241G>A	c.(241-243)GCC>ACC	p.A81T		NM_032728	NP_116117	Q8NBV4	PPAC3_HUMAN	phosphatidic acid phosphatase type 2 domain	81	interaction with MTOR (By similarity).|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	hydrolase activity			breast(1)	1	all_hematologic(7;0.0119)			OV - Ovarian serous cystadenocarcinoma(145;1.22e-05)|Epithelial(140;0.000173)		CAAGGGCATCGCCTTCAACTC	0.657													23	95					0	0	1	0	0	
UCK1	83549	broad.mit.edu	37	9	134404971	134404971	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:134404971T>A	uc004cay.2	-	3	370	c.269A>T	c.(268-270)GAT>GTT	p.D90V	UCK1_uc010mzk.2_Missense_Mutation_p.D81V|UCK1_uc004cba.2_Missense_Mutation_p.D90V|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	90					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		ATCAAAGGCATCTGCAGGGTT	0.547													25	79					0	0	1	0	0	
UCK1	83549	broad.mit.edu	37	9	134405956	134405956	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:134405956A>G	uc004cay.2	-	2	286	c.185T>C	c.(184-186)CTG>CCG	p.L62P	UCK1_uc010mzk.2_Missense_Mutation_p.L53P|UCK1_uc004cba.2_Missense_Mutation_p.L62P|UCK1_uc004caz.2_RNA	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a	62					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		GTCCTGGCTCAGGATGACCAC	0.552													41	141					0	0	1	0	0	
NTNG2	84628	broad.mit.edu	37	9	135114621	135114621	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:135114621C>T	uc004cbh.2	+	6	1961	c.1185C>T	c.(1183-1185)AAC>AAT	p.N395N		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	395	Laminin EGF-like 2.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		ACTACCGCAACGGCTCGGCAG	0.607													14	58					0	0	1	0	0	
SETX	23064	broad.mit.edu	37	9	135202830	135202830	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:135202830G>A	uc004cbk.2	-	10	4338	c.4155C>T	c.(4153-4155)GAC>GAT	p.D1385D	SETX_uc004cbj.2_Silent_p.D1004D|SETX_uc010mzt.2_Silent_p.D1004D	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1385					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		GTACAAATATGTCAGAATTCT	0.373													22	76					0	0	1	0	0	
C9orf171	389799	broad.mit.edu	37	9	135285799	135285799	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:135285799C>T	uc004cbn.2	+	1	189	c.141C>T	c.(139-141)AAC>AAT	p.N47N	C9orf171_uc004cbo.2_Silent_p.N47N	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	47										ovary(4)|large_intestine(1)	5						GCATGGAGAACGAGCGGCTGG	0.602													8	15					0	0	1	0	0	
DBH	1621	broad.mit.edu	37	9	136513045	136513045	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:136513045G>T	uc004cel.2	+	6	1111	c.1102G>T	c.(1102-1104)GGA>TGA	p.G368*		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	368	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CATGGAGCTGGGACTGGTGTA	0.612													4	40					0.00909568	0.00920787	1	1	0	
SOHLH1	402381	broad.mit.edu	37	9	138591262	138591262	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:138591262C>T	uc004cgl.2	-	1	113	c.52G>A	c.(52-54)GTC>ATC	p.V18I	KCNT1_uc011mdq.1_5'Flank|KCNT1_uc011mdr.1_5'Flank|KCNT1_uc010nbf.2_5'Flank|SOHLH1_uc010nbe.2_Missense_Mutation_p.V18I	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	18					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		CATCCCCTGACGGTAGGGATT	0.677													4	22					0	0	1	0	0	
SNAPC4	6621	broad.mit.edu	37	9	139270819	139270819	+	Missense_Mutation	SNP	G	A	A	rs144652680	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139270819G>A	uc004chh.2	-	22	4408	c.4399C>T	c.(4399-4401)CGG>TGG	p.R1467W	CARD9_uc004chg.3_5'Flank|CARD9_uc011mdw.1_5'Flank|CARD9_uc011mdx.1_5'Flank|CARD9_uc010nbj.2_5'Flank	NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	1467					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		CACACCAGCCGCCTCCGCTTC	0.627													40	124					0	0	1	0	0	
INPP5E	56623	broad.mit.edu	37	9	139325467	139325467	+	Missense_Mutation	SNP	G	A	A	rs75342839	byFrequency	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139325467G>A	uc004cho.2	-	8	2037	c.1652C>T	c.(1651-1653)ACG>ATG	p.T551M	INPP5E_uc010nbm.2_Missense_Mutation_p.T550M	NM_019892	NP_063945	Q9NRR6	INP5E_HUMAN	inositol polyphosphate-5-phosphatase E	551						cilium axoneme|cytoskeleton|Golgi cisterna membrane	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity			skin(1)	1		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;8.36e-06)|Epithelial(140;1.4e-05)		GTATGAGGGCGTCCTCTGCTT	0.612													20	34					0	0	1	0	0	
SEC16A	9919	broad.mit.edu	37	9	139368831	139368831	+	Silent	SNP	C	T	T	rs3812593		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139368831C>T	uc004chx.2	-	3	3546	c.3237G>A	c.(3235-3237)TCG>TCA	p.S1079S	SEC16A_uc004chv.3_Silent_p.S469S|SEC16A_uc004chw.2_Silent_p.S1079S|SEC16A_uc010nbn.2_Silent_p.S1079S|SEC16A_uc010nbo.1_Silent_p.S1079S	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	901					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		TTGACAGCTCCGAAAACATGG	0.607													14	23					0	0	1	0	0	
NOTCH1	4851	broad.mit.edu	37	9	139402689	139402689	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139402689C>T	uc004chz.2	-	20	3320	c.3320G>A	c.(3319-3321)CGA>CAA	p.R1107Q	NOTCH1_uc004cia.1_Missense_Mutation_p.R337Q	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1107	Extracellular (Potential).|EGF-like 29.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTTACCTTGTCGCTGCGCAGC	0.677			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			14	48					0	0	1	0	0	
ABCA2	20	broad.mit.edu	37	9	139904678	139904678	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139904678G>A	uc011mem.1	-	40	6465	c.6317C>T	c.(6316-6318)ACG>ATG	p.T2106M	ABCA2_uc011mel.1_Missense_Mutation_p.T2107M|ABCA2_uc004ckl.1_Missense_Mutation_p.T2037M|ABCA2_uc004ckm.1_Missense_Mutation_p.T2137M	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	2106	ABC transporter 2.				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCCCCCCGTCGTGCTCTCGTC	0.706													8	16					0	0	1	0	0	
MAN1B1	11253	broad.mit.edu	37	9	139994162	139994162	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139994162C>T	uc004cld.2	+	6	780	c.745C>T	c.(745-747)CGC>TGC	p.R249C	MAN1B1_uc004clc.2_Missense_Mutation_p.R150C|MAN1B1_uc011meo.1_Missense_Mutation_p.R150C|MAN1B1_uc011mep.1_Missense_Mutation_p.R249C|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	249	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		TCTGAACTATCGCCAGAAGGG	0.587													50	119					0	0	1	0	0	
EXD3	54932	broad.mit.edu	37	9	140242530	140242530	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:140242530G>A	uc004cmp.2	-	17	2187	c.1991C>T	c.(1990-1992)GCG>GTG	p.A664V	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Missense_Mutation_p.A315V|EXD3_uc004cmq.1_RNA	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	664					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CACCTCGGCCGCCCTGCGGTG	0.647													9	34					0	0	1	0	0	
SFRS17A	8227	broad.mit.edu	37	X	1712983	1712983	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:1712983G>A	uc004cqa.2	+	2	824	c.628G>A	c.(628-630)GGG>AGG	p.G210R	SFRS17A_uc010ncx.1_Missense_Mutation_p.G210R|SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_5'Flank	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	210	RRM.				B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTTCAGTTTCGGGGGGCACTT	0.587													44	108					0	0	1	0	0	
ZBED1	9189	broad.mit.edu	37	X	2407150	2407150	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:2407150C>T	uc004cqg.2	-	2	1812	c.1611G>A	c.(1609-1611)ACG>ACA	p.T537T	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.T537T	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	537						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGGCGGCGGCGTGGATGTCC	0.647													8	28					0	0	1	0	0	
ZBED1	9189	broad.mit.edu	37	X	2407741	2407741	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:2407741G>A	uc004cqg.2	-	2	1221	c.1020C>T	c.(1018-1020)AAC>AAT	p.N340N	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.N340N	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	340						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGTGGGCCACGTTCTGCTGCT	0.637													8	24					0	0	1	0	0	
MXRA5	25878	broad.mit.edu	37	X	3235934	3235934	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:3235934C>T	uc004crg.3	-	6	5945	c.5788G>A	c.(5788-5790)GCC>ACC	p.A1930T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1930	Ig-like C2-type 3.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGGTTGCTGGCGGTGCACATA	0.527													20	57					0	0	1	0	0	
KAL1	3730	broad.mit.edu	37	X	8503632	8503632	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:8503632G>A	uc004csf.2	-	12	1992	c.1842C>T	c.(1840-1842)TCC>TCT	p.S614S		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	614	Fibronectin type-III 4.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						TGGGACCTACGGAAGGCAGGA	0.498													9	32					0	0	1	0	0	
FAM9C	171484	broad.mit.edu	37	X	13058875	13058875	+	Splice_Site	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:13058875A>G	uc004cvh.1	-	5	539	c.329_splice	c.e5+1	p.R110_splice	FAM9C_uc004cvg.2_Splice_Site_p.R110_splice	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C							nucleus					0						CAACAATCATACCTTTTTAGT	0.299													10	14					0	0	1	0	0	
TXLNG	55787	broad.mit.edu	37	X	16836812	16836812	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:16836812G>A	uc004cxq.1	+	2	269	c.218G>A	c.(217-219)GGC>GAC	p.G73D	TXLNG_uc010ney.1_Intron	NM_018360	NP_060830	Q9NUQ3	TXLNG_HUMAN	gamma-taxilin	73					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane				lung(1)	1						AATTGTGGTGGCACAAGTAAC	0.418													10	155					0	0	1	0	0	
EIF1AX	1964	broad.mit.edu	37	X	20153954	20153954	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:20153954C>T	uc004czt.2	-	3	314	c.106G>A	c.(106-108)GCT>ACT	p.A36T		NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	36	S1-like.					cytosol	translation initiation factor activity			ovary(1)	1						ATTACCTGAGCATACTCTAGC	0.378													37	128					0	0	1	0	0	
RPS6KA3	6197	broad.mit.edu	37	X	20205970	20205970	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:20205970G>A	uc004czu.2	-	9	750	c.750C>T	c.(748-750)GAC>GAT	p.D250D	RPS6KA3_uc011mjk.1_Silent_p.D221D|RPS6KA3_uc004czv.2_Silent_p.D238D|RPS6KA3_uc011mjl.1_Silent_p.D222D|RPS6KA3_uc011mjm.1_Silent_p.D222D	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	250	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						AAGACCACCAGTCAGCACTCT	0.398													50	160					0	0	1	0	0	
MAGEB1	4112	broad.mit.edu	37	X	30268938	30268938	+	Missense_Mutation	SNP	T	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:30268938T>C	uc004dcc.2	+	4	648	c.328T>C	c.(328-330)TGG>CGG	p.W110R	MAGEB1_uc004dcd.2_Missense_Mutation_p.W110R|MAGEB1_uc004dce.2_Missense_Mutation_p.W110R	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	110	MAGE.										0						TCCTGTAGCCTGGGAGGCAGG	0.453													14	31					0	0	1	0	0	
DMD	1756	broad.mit.edu	37	X	32235152	32235152	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:32235152G>A	uc004dda.1	-	44	6563	c.6319C>T	c.(6319-6321)CGG>TGG	p.R2107W	DMD_uc004dcw.2_Missense_Mutation_p.R763W|DMD_uc004dcx.2_Missense_Mutation_p.R766W|DMD_uc004dcz.2_Missense_Mutation_p.R1984W|DMD_uc004dcy.1_Missense_Mutation_p.R2103W|DMD_uc004ddb.1_Missense_Mutation_p.R2099W|DMD_uc010ngo.1_Missense_Mutation_p.R16W|DMD_uc010ngn.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2107	Spectrin 15.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGAAAACGCCGCCATTTCTCA	0.348													9	36					0	0	1	0	0	
FAM47B	170062	broad.mit.edu	37	X	34960964	34960964	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:34960964C>T	uc004ddi.1	+	1	34	c.16C>T	c.(16-18)CCA>TCA	p.P6S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	6										ovary(3)|breast(1)	4						GGACCGGAGGCCACAGGACCG	0.627													3	14					0	0	1	0	0	
CHST7	56548	broad.mit.edu	37	X	46433662	46433662	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:46433662G>A	uc004dgt.2	+	1	471	c.296G>A	c.(295-297)CGC>CAC	p.R99H		NM_019886	NP_063939	Q9NS84	CHST7_HUMAN	chondroitin 6-sulfotransferase 7	99	Lumenal (Potential).				chondroitin sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity|N-acetylglucosamine 6-O-sulfotransferase activity			breast(3)	3						GCAGTGTCTCGCGAGAAGCAG	0.647													6	26					0	0	1	0	0	
CHST7	56548	broad.mit.edu	37	X	46433912	46433912	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:46433912G>A	uc004dgt.2	+	1	721	c.546G>A	c.(544-546)CCG>CCA	p.P182P		NM_019886	NP_063939	Q9NS84	CHST7_HUMAN	chondroitin 6-sulfotransferase 7	182	Lumenal (Potential).				chondroitin sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity|N-acetylglucosamine 6-O-sulfotransferase activity			breast(3)	3						cgcgcgccccggACACGGCCA	0.562													4	16					0	0	1	0	0	
CHST7	56548	broad.mit.edu	37	X	46434160	46434160	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:46434160G>A	uc004dgt.2	+	1	969	c.794G>A	c.(793-795)CGT>CAT	p.R265H		NM_019886	NP_063939	Q9NS84	CHST7_HUMAN	chondroitin 6-sulfotransferase 7	265	Lumenal (Potential).				chondroitin sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity|N-acetylglucosamine 6-O-sulfotransferase activity			breast(3)	3						CCCCTGTTGCGTGATCCAGGC	0.657													8	19					0	0	1	0	0	
ARAF	369	broad.mit.edu	37	X	47424204	47424204	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:47424204C>T	uc011mlq.1	+	4	342	c.209C>T	c.(208-210)ACG>ATG	p.T70M	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Translation_Start_Site|ARAF_uc011mlp.1_Missense_Mutation_p.T70M|ARAF_uc004dic.1_5'Flank	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	70	RBD.				intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	AGACGAAAGACGGTCACTGCC	0.592													4	8					0	0	1	0	0	
SSX6	280657	broad.mit.edu	37	X	47969945	47969945	+	Missense_Mutation	SNP	C	T	T	rs61736417		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:47969945C>T	uc004dix.1	+	3	270	c.148C>T	c.(148-150)CAT>TAT	p.H50Y	SSX6_uc011mlv.1_Missense_Mutation_p.H50Y	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						CAGCTGTGTGCATATGAAGAG	0.413													4	57					0	0	1	0	0	
HDAC6	10013	broad.mit.edu	37	X	48666716	48666716	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:48666716C>T	uc011mmi.1	+	10	884	c.789C>T	c.(787-789)ACC>ACT	p.T263T	HDAC6_uc004dks.1_Silent_p.T263T|HDAC6_uc010nig.1_Silent_p.T111T|HDAC6_uc004dkt.1_Silent_p.T263T|HDAC6_uc011mmj.1_Silent_p.T208T|HDAC6_uc011mmk.1_Silent_p.T244T	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	263	Histone deacetylase 1.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CACAGTTCACCTTCGACCAGG	0.577													10	13					0	0	1	0	0	
ERAS	3266	broad.mit.edu	37	X	48687744	48687744	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:48687744G>A	uc004dky.1	+	1	462	c.211G>A	c.(211-213)GAC>AAC	p.D71N		NM_181532	NP_853510	Q7Z444	RASE_HUMAN	ES cell expressed Ras precursor	71	Effector region (By similarity).				small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			lung(4)|urinary_tract(1)	5						GGAGGACCACGACCCCACCAT	0.612													20	53					0	0	1	0	0	
CACNA1F	778	broad.mit.edu	37	X	49067892	49067892	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:49067892C>T	uc004dnb.2	-	36	4245	c.4183G>A	c.(4183-4185)GGA>AGA	p.G1395R	CACNA1F_uc010nip.2_Missense_Mutation_p.G1384R	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1395	Extracellular (Potential).|IV.				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CACCGATTTCCGGGAAGGCTG	0.532													17	53					0	0	1	0	0	
USP27X	389856	broad.mit.edu	37	X	49645650	49645650	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:49645650G>T	uc004dop.2	+	1	1181	c.740G>T	c.(739-741)AGG>ATG	p.R247M	LOC158572_uc004doo.3_5'Flank	NM_001145073	NP_001138545	A6NNY8	UBP27_HUMAN	X-linked ubiquitin thioesterase 27	247					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity				0						AGCCCAGGGAGGGAGAGCAGT	0.587													3	2					0.004672	0.00473862	1	1	0	
DGKK	139189	broad.mit.edu	37	X	50146496	50146496	+	Missense_Mutation	SNP	T	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:50146496T>A	uc010njr.1	-	6	1238	c.1178A>T	c.(1177-1179)GAT>GTT	p.D393V		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	393					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TACTACTTCATCTGCAGGCAG	0.483													19	64					0	0	1	0	0	
IQSEC2	23096	broad.mit.edu	37	X	53285133	53285133	+	Missense_Mutation	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:53285133C>G	uc004dsd.2	-	3	1049	c.848G>C	c.(847-849)GGC>GCC	p.G283A	IQSEC2_uc004dsc.2_Missense_Mutation_p.G78A	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	273					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						AGCAGGGGGGCCCCCCATGTG	0.687													3	7					0	0	1	0	0	
RIBC1	158787	broad.mit.edu	37	X	53454959	53454959	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:53454959C>T	uc004dsk.2	+	4	279	c.126C>T	c.(124-126)GTC>GTT	p.V42V	RIBC1_uc004dsj.1_Silent_p.V42V|RIBC1_uc011mog.1_Silent_p.V42V	NM_001031745	NP_001026915	Q8N443	RIBC1_HUMAN	RIB43A domain with coiled-coils 1 isoform 1	42											0						AGGTGGATGTCCAGGCCCTGA	0.517													13	37					0	0	1	0	0	
HUWE1	10075	broad.mit.edu	37	X	53631667	53631667	+	Silent	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:53631667A>C	uc004dsp.2	-	26	3027	c.2625T>G	c.(2623-2625)GCT>GCG	p.A875A		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	875					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGCCTGCGCAAGCCAGTTCTC	0.562													13	31					0	0	1	0	0	
MTMR8	55613	broad.mit.edu	37	X	63555963	63555963	+	Missense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:63555963G>T	uc004dvs.2	-	10	1215	c.1147C>A	c.(1147-1149)CAA>AAA	p.Q383K	MTMR8_uc011mou.1_Intron|MTMR8_uc004dvt.1_Missense_Mutation_p.Q383K	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	383	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						TTTTACCTTTGGGAAAACTTG	0.338													15	61					4.75885e-15	5.16551e-15	1	1	0	
EDA	1896	broad.mit.edu	37	X	69243069	69243069	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:69243069C>T	uc004dxs.2	+	3	746	c.504C>T	c.(502-504)GGC>GGT	p.G168G	EDA_uc004dxr.2_Silent_p.G168G|EDA_uc011mpj.1_Silent_p.G168G	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	168	Extracellular (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						TTCTTATAGGCCCAGTTAAAA	0.303													9	34					0	0	1	0	0	
OGT	8473	broad.mit.edu	37	X	70757854	70757854	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:70757854G>A	uc004eaa.1	+	3	611	c.394G>A	c.(394-396)GCC>ACC	p.A132T	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.A122T|OGT_uc011mpw.1_Missense_Mutation_p.A132T	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	132	TPR 3.				cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					CCTGGCAGCCGCCTTGGTAGC	0.463													16	53					0	0	1	0	0	
ABCB7	22	broad.mit.edu	37	X	74376093	74376093	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:74376093C>T	uc004eca.2	-	1	40	c.15G>A	c.(13-15)GCG>GCA	p.A5A	ABCB7_uc004ebz.2_Silent_p.A5A|ABCB7_uc011mqn.1_Silent_p.A5A|ABCB7_uc010nls.2_Silent_p.A5A|ABCB7_uc010nlt.2_Silent_p.A5A	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	5					cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						AAGAATGCATCGCGAGCAGCG	0.582											OREG0019879	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	11					0	0	1	0	0	
ATRX	546	broad.mit.edu	37	X	76939918	76939918	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:76939918A>G	uc004ecp.3	-	9	1062	c.830T>C	c.(829-831)GTC>GCC	p.V277A	ATRX_uc004ecq.3_Missense_Mutation_p.V239A|ATRX_uc004eco.3_Missense_Mutation_p.V62A|ATRX_uc004ecr.2_Missense_Mutation_p.V238A|ATRX_uc010nlx.1_Missense_Mutation_p.V277A|ATRX_uc010nly.1_Missense_Mutation_p.V222A	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	277	ADD.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ACATGCAGTGACCAAGTCCAA	0.368			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						49	185					0	0	1	0	0	
MAGT1	84061	broad.mit.edu	37	X	77150883	77150883	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:77150883A>G	uc004fof.2	-	1	183	c.121T>C	c.(121-123)TGT>CGT	p.C41R	MAGT1_uc004fog.3_RNA|MAGT1_uc004ect.3_Missense_Mutation_p.C41R	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	9					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						ACAGAGACACACCAAAACCGC	0.567													14	47					0	0	1	0	0	
POU3F4	5456	broad.mit.edu	37	X	82763852	82763852	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:82763852G>A	uc004eeg.2	+	1	584	c.520G>A	c.(520-522)GAA>AAA	p.E174K		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	174					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGATCACGGCGAACTGGGCTC	0.602													6	14					0	0	1	0	0	
PCDH11X	27328	broad.mit.edu	37	X	91873765	91873765	+	Silent	SNP	C	T	T	rs146706969		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:91873765C>T	uc004efk.1	+	7	4715	c.3870C>T	c.(3868-3870)TGC>TGT	p.C1290C	PCDH11X_uc004efl.1_Silent_p.C1280C|PCDH11X_uc004efo.1_Silent_p.C1253C|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Silent_p.C1282C|PCDH11X_uc004efn.1_Silent_p.C1272C	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1290	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ATGGGCTATGCTCTGTTGATC	0.473													16	311					0	0	1	0	0	
DIAPH2	1730	broad.mit.edu	37	X	96013170	96013170	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:96013170C>T	uc004efu.3	+	4	756	c.360C>T	c.(358-360)AAC>AAT	p.N120N	DIAPH2_uc004eft.3_Silent_p.N120N|DIAPH2_uc004efs.2_Silent_p.N120N	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	120	GBD/FH3.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						TGAACCTTAACGAAGAGAAAA	0.363													13	44					0	0	1	0	0	
SYTL4	94121	broad.mit.edu	37	X	99956505	99956505	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:99956505C>T	uc004egd.3	-	5	631	c.275G>A	c.(274-276)CGC>CAC	p.R92H	SYTL4_uc010nnc.2_Missense_Mutation_p.R92H|SYTL4_uc004ege.3_Missense_Mutation_p.R92H|SYTL4_uc004egf.3_Missense_Mutation_p.R92H|SYTL4_uc004egg.3_Missense_Mutation_p.R92H	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	92	RabBD.|FYVE-type.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTCCTGTATGCGGCAGTCCCG	0.582													39	104					0	0	1	0	0	
TCEAL5	340543	broad.mit.edu	37	X	102529121	102529121	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:102529121G>A	uc004ejz.1	-	3	666	c.371C>T	c.(370-372)ACG>ATG	p.T124M		NM_001012979	NP_001012997	Q5H9L2	TCAL5_HUMAN	transcription elongation factor A (SII)-like 5	124					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(1)|breast(1)	2						GGAATCGTCCGTCCCCCTGTC	0.577													48	140					0	0	1	0	0	
WBP5	51186	broad.mit.edu	37	X	102612760	102612760	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:102612760A>G	uc004ekd.2	+	3	449	c.148A>G	c.(148-150)ATT>GTT	p.I50V	WBP5_uc004eke.2_Missense_Mutation_p.I50V|WBP5_uc004ekf.2_Missense_Mutation_p.I50V|WBP5_uc004ekg.2_Missense_Mutation_p.I50V	NM_001006612	NP_001006613	Q9UHQ7	WPB5_HUMAN	WW domain binding protein 5	50	Glu-rich.										0						AGAAAGGCTGATTCAATCTCT	0.413													27	82					0	0	1	0	0	
FAM199X	139231	broad.mit.edu	37	X	103432819	103432819	+	Silent	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:103432819C>T	uc004elw.2	+	5	994	c.828C>T	c.(826-828)AGC>AGT	p.S276S	FAM199X_uc004elx.2_Silent_p.S93S	NM_207318	NP_997201	Q6PEV8	F199X_HUMAN	hypothetical protein LOC139231	276	Ser-rich.									ovary(1)	1						GTGGAGTGAGCGGTGCCAGTG	0.552													32	91					0	0	1	0	0	
IL1RAPL2	26280	broad.mit.edu	37	X	105011292	105011292	+	Missense_Mutation	SNP	T	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:105011292T>G	uc004elz.1	+	11	2455	c.1699T>G	c.(1699-1701)TGC>GGC	p.C567G		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	567	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GCTACCTCGGTGCCATGTTCT	0.433													35	122					0	0	1	0	0	
NRK	203447	broad.mit.edu	37	X	105137885	105137885	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:105137885C>T	uc004emd.2	+	6	742	c.439C>T	c.(439-441)CAG>TAG	p.Q147*	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	147	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GACCAGTAATCAGAGTTTAAA	0.403										HNSCC(51;0.14)			12	28					0	0	1	0	0	
LRCH2	57631	broad.mit.edu	37	X	114384409	114384409	+	Missense_Mutation	SNP	A	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:114384409A>C	uc010nqe.2	-	14	1707	c.1676T>G	c.(1675-1677)ATT>AGT	p.I559S	LRCH2_uc004epz.2_Missense_Mutation_p.I559S	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	559										ovary(1)	1						TTCTTTTCTAATCTGTTTGCT	0.323													9	28					0	0	1	0	0	
XPNPEP2	7512	broad.mit.edu	37	X	128880625	128880625	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:128880625G>A	uc004eut.1	+	6	702	c.458G>A	c.(457-459)CGT>CAT	p.R153H	XPNPEP2_uc011mum.1_Missense_Mutation_p.R153H	NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	153					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						GCTGGAGGGCGTGTGGGTTTT	0.517													65	152					0	0	1	0	0	
RAB33A	9363	broad.mit.edu	37	X	129318301	129318301	+	Missense_Mutation	SNP	A	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:129318301A>G	uc004evl.2	+	2	565	c.301A>G	c.(301-303)AGC>GGC	p.S101G	RAB33A_uc010nre.2_RNA	NM_004794	NP_004785	Q14088	RB33A_HUMAN	Ras-related protein Rab-33A	101					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding				0						TTTCCGCAAAAGCATGGTCGA	0.483													7	86					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135426784	135426784	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:135426784G>A	uc004ezu.1	+	6	1210	c.919G>A	c.(919-921)GTA>ATA	p.V307I	GPR112_uc010nsb.1_Missense_Mutation_p.V102I|GPR112_uc010nsc.1_Missense_Mutation_p.V74I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	307	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AAAGACACTGGTAGATGAGAC	0.378													25	99					0	0	1	0	0	
GPR101	83550	broad.mit.edu	37	X	136112821	136112821	+	Missense_Mutation	SNP	C	T	T	rs148515087		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:136112821C>T	uc011mwh.1	-	1	1013	c.1013G>A	c.(1012-1014)CGC>CAC	p.R338H		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	338	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GACCTCTGTGCGACCCTTGTC	0.542													85	270					0	0	1	0	0	
GPR101	83550	broad.mit.edu	37	X	136113350	136113350	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:136113350G>A	uc011mwh.1	-	1	484	c.484C>T	c.(484-486)CAG>TAG	p.Q162*		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	162	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GGAGTGCTCTGCAGGATGGCC	0.597													4	30					0	0	1	0	0	
SPANXN3	139067	broad.mit.edu	37	X	142596775	142596775	+	Missense_Mutation	SNP	C	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:142596775C>T	uc004fbw.2	-	2	383	c.295G>A	c.(295-297)GAT>AAT	p.D99N		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	99										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTCTTCATCCTCATTTGAA	0.453													40	117					0	0	1	0	0	
GPR50	9248	broad.mit.edu	37	X	150349107	150349107	+	Missense_Mutation	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:150349107G>A	uc010ntg.1	+	2	1187	c.1052G>A	c.(1051-1053)CGT>CAT	p.R351H	uc004fes.1_5'Flank|GPR50_uc011myc.1_3'UTR	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	351	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAACAAGACCGTGCCCATGCC	0.612													47	129					0	0	1	0	0	
MAGEA6	4105	broad.mit.edu	37	X	151869697	151869697	+	Silent	SNP	G	T	T	rs144510184		TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:151869697G>T	uc004ffq.1	+	3	581	c.387G>T	c.(385-387)CCG>CCT	p.P129P	MAGEA6_uc004ffr.1_Silent_p.P129P|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	129	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGGAGCCGGTCACAAAGG	0.522													13	170					0.00244969	0.00249411	1	1	0	
MAGEA6	4105	broad.mit.edu	37	X	151870148	151870148	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:151870148G>T	uc004ffq.1	+	3	1032	c.838G>T	c.(838-840)GAA>TAA	p.E280*	MAGEA6_uc004ffr.1_Nonsense_Mutation_p.E280*|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	280	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCCTCATTGAAACCAGCTA	0.537													61	188					8.77104e-35	9.73851e-35	1	1	0	
MAGEA3	4102	broad.mit.edu	37	X	151935399	151935399	+	Silent	SNP	C	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:151935399C>G	uc004fgp.2	-	3	977	c.768G>C	c.(766-768)CTG>CTC	p.L256L		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	256	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GCCGGTACTCCAGGTAGTTTT	0.532													52	142					0	0	1	0	0	
ATP2B3	492	broad.mit.edu	37	X	152813354	152813354	+	Silent	SNP	G	A	A			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:152813354G>A	uc004fht.1	+	7	1146	c.1020G>A	c.(1018-1020)GGG>GGA	p.G340G	ATP2B3_uc004fhs.1_Silent_p.G340G	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	340	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGGAGGGTGGGGAGATGGAGG	0.582													16	93					0	0	1	0	0	
HFM1	164045	broad.mit.edu	37	1	91781980	91781980	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr1:91781980delT	uc001doa.3	-	26	2966	c.2866delA	c.(2866-2868)ATAfs	p.I956fs	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Frame_Shift_Del_p.I635fs|HFM1_uc001dob.3_Frame_Shift_Del_p.I144fs|HFM1_uc010osv.1_Frame_Shift_Del_p.I640fs	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	956	SEC63.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		GTCTCTTCTATTTTTTTAAAG	0.294													42	86	---	---	---	---						.
FUT11	170384	broad.mit.edu	37	10	75535344	75535344	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr10:75535344delG	uc001jva.2	+	3	1423	c.1380delG	c.(1378-1380)CAGfs	p.Q460fs	FUT11_uc001juz.1_3'UTR	NM_173540	NP_775811	Q495W5	FUT11_HUMAN	fucosyltransferase 11 (alpha (1,3)	460	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity				0	Prostate(51;0.0112)					GTCTGGACCAGGGGGAAGCTC	0.433													29	63	---	---	---	---						.
ANKK1	255239	broad.mit.edu	37	11	113270239	113270239	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr11:113270239delG	uc001pny.2	+	8	1642	c.1548delG	c.(1546-1548)CAGfs	p.Q516fs		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	516	ANK 5.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		TGACCAGCCAGGGGGCTGAGT	0.602													9	15	---	---	---	---						.
MLL2	8085	broad.mit.edu	37	12	49434384	49434384	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:49434384delG	uc001rta.3	-	31	7169	c.7169delC	c.(7168-7170)CCGfs	p.P2390fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2390	Pro-rich.|Poly-Pro.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTCAGGGGGCGGAGGTTGGGG	0.632			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			21	37	---	---	---	---						.
KRT6C	286887	broad.mit.edu	37	12	52867151	52867151	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:52867151delC	uc001sal.3	-	1	419	c.371delG	c.(370-372)GGCfs	p.G124fs		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	124	Head.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GAAGCCAGGGCCCCCAAAGCC	0.627													8	1	---	---	---	---						.
TENC1	23371	broad.mit.edu	37	12	53452869	53452869	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:53452869delC	uc001sbp.2	+	18	1579	c.1444delC	c.(1444-1446)CCTfs	p.P482fs	TENC1_uc001sbl.2_Frame_Shift_Del_p.P358fs|TENC1_uc001sbn.2_Frame_Shift_Del_p.P492fs|TENC1_uc001sbq.2_5'UTR|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_5'UTR|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	482					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						GGATGGCAGTCCTTATGCCCA	0.667													62	120	---	---	---	---						.
CEP290	80184	broad.mit.edu	37	12	88453675	88453675	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr12:88453675delT	uc001tar.2	-	48	6989	c.6645delA	c.(6643-6645)AAAfs	p.K2215fs	CEP290_uc001taq.2_Frame_Shift_Del_p.K1275fs	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	2215	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						AAAGTCATACTTTTTTAAGTT	0.333													5	8	---	---	---	---						.
MDGA2	161357	broad.mit.edu	37	14	47530771	47530771	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr14:47530771delT	uc001wwj.3	-	7	1195	c.999delA	c.(997-999)AAAfs	p.K333fs	MDGA2_uc001wwi.3_Frame_Shift_Del_p.K104fs|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	333					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						AAAATCGTCCTTTTTTTAATG	0.353													11	25	---	---	---	---						.
CASKIN1	57524	broad.mit.edu	37	16	2230946	2230946	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr16:2230946delG	uc010bsg.1	-	18	2455	c.2423delC	c.(2422-2424)CCGfs	p.P808fs		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	808	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						CAGCAGCTGCGGGGTGGGCTT	0.711													5	8	---	---	---	---						.
ZBTB7C	201501	broad.mit.edu	37	18	45567085	45567085	+	Frame_Shift_Del	DEL	C	-	-	rs115080210	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr18:45567085delC	uc002lda.2	-	1	410	c.394delG	c.(394-396)GACfs	p.D132fs	ZBTB7C_uc002ldb.2_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dnu.2_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010dnv.2_Frame_Shift_Del_p.D154fs|ZBTB7C_uc010dnw.2_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dnx.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dny.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dnz.1_Frame_Shift_Del_p.D154fs|ZBTB7C_uc010dob.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010doc.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010dod.1_Frame_Shift_Del_p.D154fs|ZBTB7C_uc010doe.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dof.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dog.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010doh.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010doi.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010doj.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010dok.1_Frame_Shift_Del_p.D181fs|ZBTB7C_uc010dol.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010doa.1_Frame_Shift_Del_p.D154fs|ZBTB7C_uc010don.1_Frame_Shift_Del_p.D140fs|ZBTB7C_uc010doo.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dop.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010doq.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010dor.1_Frame_Shift_Del_p.D154fs|ZBTB7C_uc010dos.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dot.1_Frame_Shift_Del_p.D132fs|ZBTB7C_uc010dou.1_Frame_Shift_Del_p.D141fs|ZBTB7C_uc010dom.1_Frame_Shift_Del_p.D141fs	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	132	Glu-rich.|Asp-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						tcccccccgtcccccCCAGGC	0.289													10	23	---	---	---	---						.
CDC42EP5	148170	broad.mit.edu	37	19	54976341	54976341	+	Frame_Shift_Del	DEL	G	-	-	rs150839818	by1000genomes	TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr19:54976341delG	uc002qfz.1	-	3	744	c.391delC	c.(391-393)CAGfs	p.Q131fs	LENG9_uc010yez.1_5'Flank	NM_145057	NP_659494	Q6NZY7	BORG3_HUMAN	CDC42 effector protein 5	131					positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|membrane	GTP-Rho binding				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.138)		CAGCGGGCCTGGGGGGGCTGC	0.751													4	2	---	---	---	---						.
TOP1	7150	broad.mit.edu	37	20	39725955	39725955	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr20:39725955delA	uc002xjl.2	+	10	1072	c.826delA	c.(826-828)AAAfs	p.K276fs	TOP1_uc010gge.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	276					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	AATATTTAGGAAAAATTTCTT	0.353			T	NUP98	AML*								59	83	---	---	---	---						.
CECR6	27439	broad.mit.edu	37	22	17601118	17601119	+	Frame_Shift_Ins	INS	-	C	C			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr22:17601118_17601119insC	uc002zmb.2	-	1	1095_1096	c.899_900insG	c.(898-900)GGCfs	p.G300fs	CECR6_uc002zma.2_Intron|uc002zmc.2_5'Flank	NM_031890	NP_114096	Q9BXQ6	CECR6_HUMAN	cat eye syndrome chromosome region, candidate 6	300	Ala-rich.										0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.221)		cccccaggccgccccccgcgcc	0.485													7	16	---	---	---	---						.
FBLN2	2199	broad.mit.edu	37	3	13612536	13612536	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr3:13612536delC	uc011avb.1	+	2	806	c.681delC	c.(679-681)GGCfs	p.G227fs	FBLN2_uc011auz.1_Frame_Shift_Del_p.G253fs|FBLN2_uc011ava.1_Frame_Shift_Del_p.G227fs|FBLN2_uc011avc.1_Frame_Shift_Del_p.G227fs	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	227	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			GCGCAGGGGGCCCCCCAGCTG	0.701													4	8	---	---	---	---						.
KLF3	51274	broad.mit.edu	37	4	38690460	38690460	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr4:38690460delA	uc003gth.3	+	3	644	c.312delA	c.(310-312)ATAfs	p.I104fs	KLF3_uc003gtg.2_Frame_Shift_Del_p.I104fs	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	104	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						GCCCACCGATAAAAAAATACT	0.617													45	80	---	---	---	---						.
CHSY3	337876	broad.mit.edu	37	5	129240751	129240751	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr5:129240751delC	uc003kvd.2	+	1	229	c.229delC	c.(229-231)CCCfs	p.P77fs		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	77	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		GCAGTCGCCGCCCCCCGCGCG	0.736													6	10	---	---	---	---						.
BMP6	654	broad.mit.edu	37	6	7727711	7727711	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:7727711delC	uc003mxu.3	+	1	701	c.523delC	c.(523-525)CCCfs	p.P175fs		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	175					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					TCGGCAGCCGCCCCCGGGCGC	0.751													7	11	---	---	---	---						.
TTK	7272	broad.mit.edu	37	6	80751906	80751906	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr6:80751906delG	uc003pjc.2	+	22	2635	c.2561delG	c.(2560-2562)AGGfs	p.R854fs	TTK_uc003pjb.3_Frame_Shift_Del_p.R853fs	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	854					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		GAAAAAAAAAGGGGAAAAAAA	0.308													20	31	---	---	---	---						.
TAF6	6878	broad.mit.edu	37	7	99709365	99709368	+	Frame_Shift_Del	DEL	AGAG	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:99709365_99709368delAGAG	uc003uti.2	-	9	964_967	c.883_886delCTCT	c.(883-888)CTCTATfs	p.L295fs	TAF6_uc003utg.2_Frame_Shift_Del_p.L217fs|TAF6_uc003uth.2_Frame_Shift_Del_p.L352fs|TAF6_uc003utk.2_Frame_Shift_Del_p.L295fs|TAF6_uc011kji.1_Frame_Shift_Del_p.L332fs|TAF6_uc003utj.2_Frame_Shift_Del_p.L285fs|TAF6_uc003utl.2_Frame_Shift_Del_p.L295fs|TAF6_uc003utm.2_Frame_Shift_Del_p.L295fs|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	295_296					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TTTTCTAGATAGAGCGTGGGGTTG	0.510													34	77	---	---	---	---						.
ATG9B	285973	broad.mit.edu	37	7	150721322	150721322	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr7:150721322delG	uc011kvc.1	-	1	265	c.189delC	c.(187-189)CCCfs	p.P63fs	ATG9B_uc003wig.3_5'Flank	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	63	Pro-rich.|Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAATGAGGAGGGGGAGCTTC	0.632													6	9	---	---	---	---						.
C8orf47	203111	broad.mit.edu	37	8	99076899	99076900	+	Frame_Shift_Ins	INS	-	G	G			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr8:99076899_99076900insG	uc003yih.1	+	1	150_151	c.2_3insG	c.(1-3)ATGfs	p.M1fs		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	1											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			CTCCCCGCAATGGGCTGCTCCA	0.609													3	6	---	---	---	---						.
NOTCH1	4851	broad.mit.edu	37	9	139390736	139390736	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chr9:139390736delG	uc004chz.2	-	34	7455	c.7455delC	c.(7453-7455)CCCfs	p.P2485fs		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2485	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TGTGCTGCGAGGGGGGCGTCA	0.687			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	10	---	---	---	---						.
CXorf65	158830	broad.mit.edu	37	X	70325942	70325942	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D7-A4YV-01A-11D-A25D-08	TCGA-D7-A4YV-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	5adc47c4-651b-456b-9c37-0a2980dddc44	a1f1d449-d527-42ca-96e4-96095e5c3c25	g.chrX:70325942delA	uc011mpo.1	-	3	172	c.158delT	c.(157-159)TTCfs	p.F53fs	CXorf65_uc011mpp.1_Frame_Shift_Del_p.F5fs	NM_001025265	NP_001020436	A6NEN9	CX065_HUMAN	hypothetical protein LOC158830	53										central_nervous_system(1)	1						CTTCATCAGGAAAAGCATCTT	0.493													36	69	---	---	---	---						.
