Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
ATAD3A	55210	broad.mit.edu	37	1	1459758	1459758	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:1459758G>A	uc001afz.1	+	11	1433	c.1339G>A	c.(1339-1341)GCC>ACC	p.A447T	ATAD3A_uc001aga.1_Missense_Mutation_p.A399T|ATAD3A_uc001agb.1_Missense_Mutation_p.A320T	NM_018188	NP_060658	Q9NVI7	ATD3A_HUMAN	ATPase family, AAA domain containing 3A	447							ATP binding|nucleoside-triphosphatase activity|protein binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.12e-36)|OV - Ovarian serous cystadenocarcinoma(86;2.18e-22)|Colorectal(212;0.000164)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00233)|BRCA - Breast invasive adenocarcinoma(365;0.00469)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0347)|Lung(427;0.147)		CTTTGACTGGGCCAATACCAG	0.677													16	31					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	1	1854468	1854468	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:1854468G>C	uc001aik.2	-	9	1487	c.637C>G	c.(637-639)CTG>GTG	p.L213V	uc001ail.2_Missense_Mutation_p.L213V					RecName: Full=Uncharacterized protein C1orf222;																		CCCACCTGCAGCTCTCGGGTG	0.657													15	51					0	0	1	0	0	
SKI	6497	broad.mit.edu	37	1	2235330	2235330	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:2235330C>T	uc001aja.3	+	4	1335	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	421					anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		ACGTGGCCCTCGCACCGCCGG	0.692													7	11					0	0	1	0	0	
MMEL1	79258	broad.mit.edu	37	1	2523063	2523063	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:2523063C>T	uc001ajy.2	-	23	2387	c.2173G>A	c.(2173-2175)GGG>AGG	p.G725R	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	725	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		CGGTAGGACCCGCACCACACC	0.647													39	82					0	0	1	0	0	
PLEKHG5	57449	broad.mit.edu	37	1	6533171	6533171	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:6533171T>C	uc001ano.1	-	10	1128	c.1027A>G	c.(1027-1029)AGG>GGG	p.R343G	PLEKHG5_uc001ann.1_Missense_Mutation_p.R324G|PLEKHG5_uc001anq.1_Missense_Mutation_p.R364G|PLEKHG5_uc001anp.1_Missense_Mutation_p.R364G|PLEKHG5_uc001anj.1_5'Flank|PLEKHG5_uc009vma.1_Missense_Mutation_p.R127G|PLEKHG5_uc010nzr.1_Missense_Mutation_p.R356G|PLEKHG5_uc001ank.1_Missense_Mutation_p.R287G|PLEKHG5_uc009vmb.1_Missense_Mutation_p.R287G|PLEKHG5_uc001anl.1_Missense_Mutation_p.R287G|PLEKHG5_uc001anm.1_Missense_Mutation_p.R287G	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	343					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		CGGGGCAGCCTGGGCAGCCCG	0.622													20	25					0	0	1	0	0	
TAS1R1	80835	broad.mit.edu	37	1	6636499	6636499	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:6636499C>T	uc001ant.2	+	4	1285	c.1285C>T	c.(1285-1287)CAT>TAT	p.H429Y	TAS1R1_uc001anu.2_Missense_Mutation_p.H175Y|TAS1R1_uc001anv.2_Missense_Mutation_p.H175Y|TAS1R1_uc001anw.2_Intron	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	429	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CCACAAGGTGCATTTCCTTCT	0.512													35	114					0	0	1	0	0	
RERE	473	broad.mit.edu	37	1	8415661	8415661	+	Splice_Site	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:8415661T>G	uc001ape.2	-	23	5297	c.4487_splice	c.e23-1	p.G1496_splice	RERE_uc001apf.2_Splice_Site_p.G1496_splice|RERE_uc001apd.2_Splice_Site_p.G942_splice	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a						multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		AGGGGGTGCCTGCCGAACACA	0.642													5	11					0	0	1	0	0	
SLC2A7	155184	broad.mit.edu	37	1	9067418	9067418	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:9067418G>T	uc009vmo.1	-	10	1143	c.1143C>A	c.(1141-1143)CTC>CTA	p.L381L		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	381	Helical; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		AGATGATGCCGAGGTAGGACA	0.607													15	28					3.27435e-08	3.4689e-08	1	1	0	
UBE4B	10277	broad.mit.edu	37	1	10155592	10155592	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:10155592G>A	uc001aqs.3	+	3	998	c.285G>A	c.(283-285)ACG>ACA	p.T95T	UBE4B_uc001aqr.3_Silent_p.T95T|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_5'UTR	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	95					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GCCTTGAAACGCAATCTCAGT	0.443													14	41					0	0	1	0	0	
KIF1B	23095	broad.mit.edu	37	1	10384888	10384888	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:10384888C>T	uc001aqx.3	+	26	2812	c.2610C>T	c.(2608-2610)AGC>AGT	p.S870S	KIF1B_uc001aqw.3_Silent_p.S824S|KIF1B_uc001aqy.2_Silent_p.S844S|KIF1B_uc001aqz.2_Silent_p.S870S|KIF1B_uc001ara.2_Silent_p.S830S|KIF1B_uc001arb.2_Silent_p.S856S	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	870					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AAGACGAAAGCGAAACCACTG	0.468													35	83					0	0	1	0	0	
KIF1B	23095	broad.mit.edu	37	1	10399859	10399859	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:10399859C>T	uc001aqx.3	+	32	3657	c.3455C>T	c.(3454-3456)ACG>ATG	p.T1152M	KIF1B_uc001aqw.3_Missense_Mutation_p.T1106M|KIF1B_uc001aqy.2_Missense_Mutation_p.T1126M|KIF1B_uc001aqz.2_Missense_Mutation_p.T1152M|KIF1B_uc001ara.2_Missense_Mutation_p.T1112M|KIF1B_uc001arb.2_Missense_Mutation_p.T1138M	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1152					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GCATTCTCCACGGAGCCCCTC	0.393													13	24					0	0	1	0	0	
C1orf187	374946	broad.mit.edu	37	1	11769435	11769435	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:11769435G>A	uc001asr.1	+	3	695	c.555G>A	c.(553-555)GCG>GCA	p.A185A		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	185					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		CCAGCCTGGCGCCCACCATGT	0.632													11	23					0	0	1	0	0	
C1orf89	79363	broad.mit.edu	37	1	16558758	16558758	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:16558758G>A	uc001ayd.2	-	5	984	c.562C>T	c.(562-564)CGG>TGG	p.R188W		NM_030907	NP_112169	Q9BU20	RSG1_HUMAN	hypothetical protein LOC79363	188	Small GTPase-like.				cellular protein localization|cilium assembly|exocytosis|protein transport|regulation of exocytosis|regulation of vesicle fusion|small GTPase mediated signal transduction	cilium|microtubule basal body	GTP binding				0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.2e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		GTGAGGTCCCGCTCGGGCACG	0.677													7	14					0	0	1	0	0	
MST1P2	11209	broad.mit.edu	37	1	16974397	16974397	+	RNA	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:16974397C>T	uc009vow.2	+	5		c.1207C>T			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						AGCGTTGGGACGCGCAAATCC	0.647													9	87					0	0	1	0	0	
MST1P9	11223	broad.mit.edu	37	1	17085865	17085865	+	Missense_Mutation	SNP	A	G	G	rs1057378	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:17085865A>G	uc010ock.1	-	8	956	c.956T>C	c.(955-957)CTC>CCC	p.L319P	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TGAGCCGTCGAGGTTCCAGCA	0.667													4	39					0	0	1	0	0	
MST1P9	11223	broad.mit.edu	37	1	17085872	17085872	+	Missense_Mutation	SNP	A	G	G	rs1806514	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:17085872A>G	uc010ock.1	-	8	949	c.949T>C	c.(949-951)TGG>CGG	p.W317R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCGAGGTTCCAGCAGAAGTTC	0.662													4	38					0	0	1	0	0	
C1QB	713	broad.mit.edu	37	1	22987798	22987798	+	Silent	SNP	C	T	T	rs146518300		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:22987798C>T	uc001bgd.2	+	3	813	c.681C>T	c.(679-681)ACC>ACT	p.T227T		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	227	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGCAGGCCACCGACAAGAACT	0.567													18	61					0	0	1	0	0	
MYOM3	127294	broad.mit.edu	37	1	24400729	24400729	+	Silent	SNP	G	A	A	rs143604444	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:24400729G>A	uc001bin.3	-	23	3052	c.2889C>T	c.(2887-2889)CTC>CTT	p.L963L	MYOM3_uc001bim.3_Silent_p.L620L|MYOM3_uc001bio.2_Silent_p.L963L	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	963										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CCAAATCCTCGAGGCCGGGTT	0.587													25	56					0	0	1	0	0	
NR0B2	8431	broad.mit.edu	37	1	27238397	27238397	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:27238397C>T	uc001bnf.2	-	2	849	c.713G>A	c.(712-714)CGC>CAC	p.R238H		NM_021969	NP_068804	Q15466	NR0B2_HUMAN	short heterodimer partner	238					cholesterol metabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	DNA binding|protein domain specific binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.01e-51)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		AATGATAGGGCGAAAGAAGAG	0.612													24	85					0	0	1	0	0	
WASF2	10163	broad.mit.edu	37	1	27736343	27736343	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:27736343G>A	uc001bof.1	-	8	1398	c.1182C>T	c.(1180-1182)CCC>CCT	p.P394P	WASF2_uc010ofl.1_Intron	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	394	Poly-Pro.				actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		gaggaggagggggaggaggag	0.532													19	24					0	0	1	0	0	
RCC1	1104	broad.mit.edu	37	1	28862888	28862888	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:28862888C>T	uc001bqg.1	+	8	1017	c.932C>T	c.(931-933)TCG>TTG	p.S311L	SNHG3-RCC1_uc001bqa.1_Missense_Mutation_p.S311L|SNHG3-RCC1_uc001bqb.1_Missense_Mutation_p.S311L|SNHG3-RCC1_uc001bqc.1_Missense_Mutation_p.S311L|RCC1_uc001bqe.1_Missense_Mutation_p.S328L|RCC1_uc001bqf.1_Missense_Mutation_p.S342L	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	311	RCC1 5.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		TGCATGGATTCGGAAGGTAGG	0.542													40	97					0	0	1	0	0	
IQCC	55721	broad.mit.edu	37	1	32672879	32672879	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:32672879G>A	uc001bum.2	+	5	644	c.597G>A	c.(595-597)GCG>GCA	p.A199A	IQCC_uc009vua.2_Silent_p.A279A|IQCC_uc010ogz.1_Silent_p.A99A|DCDC2B_uc001bun.2_5'Flank	NM_018134	NP_060604	Q4KMZ1	IQCC_HUMAN	IQ motif containing C isoform 2	199										ovary(4)	4		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CCCCAGAGGCGGGCCCGATCA	0.567													33	83					0	0	1	0	0	
EIF2C4	192670	broad.mit.edu	37	1	36288485	36288485	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:36288485C>T	uc001bzj.1	+	3	398	c.208C>T	c.(208-210)CGG>TGG	p.R70W		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	70					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TACAATGGTGCGGCACTTCAA	0.423													19	33					0	0	1	0	0	
STK40	83931	broad.mit.edu	37	1	36809855	36809855	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:36809855G>A	uc001cak.1	-	9	1157	c.750C>T	c.(748-750)TAC>TAT	p.Y250Y	STK40_uc001cal.1_Silent_p.Y255Y|STK40_uc001cam.1_Silent_p.Y250Y|STK40_uc009vva.1_Silent_p.Y250Y|STK40_uc001can.1_Silent_p.Y250Y	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	250	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				GCTTGCCACGGTACGGCCGGC	0.637													26	51					0	0	1	0	0	
DNALI1	7802	broad.mit.edu	37	1	38027698	38027698	+	Missense_Mutation	SNP	C	T	T	rs140560934	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:38027698C>T	uc001cbj.2	+	5	669	c.659C>T	c.(658-660)ACG>ATG	p.T220M	DNALI1_uc010oie.1_RNA	NM_003462	NP_003453	O14645	IDLC_HUMAN	dynein, axonemal, light intermediate chain 1	198	Potential.				cellular component movement|single fertilization	axonemal dynein complex	microtubule motor activity			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GAATTGGAGACGGAAAAGAGA	0.557											OREG0013380	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	50					0	0	1	0	0	
INPP5B	3633	broad.mit.edu	37	1	38411462	38411462	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:38411462G>A	uc001ccg.1	-	3	212	c.118C>T	c.(118-120)CGC>TGC	p.R40C	INPP5B_uc009vvk.1_5'UTR|INPP5B_uc001cch.2_5'UTR	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	40					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AGGCGGTAGCGCACGAGTCCC	0.667													36	62					0	0	1	0	0	
BMP8A	353500	broad.mit.edu	37	1	39988086	39988086	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:39988086G>A	uc001cdi.2	+	5	1226	c.880G>A	c.(880-882)GGC>AGC	p.G294S	PPIEL_uc001cdj.1_RNA|PPIEL_uc001cdk.2_RNA	NM_181809	NP_861525	Q7Z5Y6	BMP8A_HUMAN	bone morphogenetic protein 8A precursor	294					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(20;2.08e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;9.69e-19)|Epithelial(16;9.34e-17)|all cancers(16;1.73e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGACGTCCGCGGCTCCCACGG	0.597													17	81					0	0	1	0	0	
CCDC17	149483	broad.mit.edu	37	1	46086576	46086576	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:46086576T>C	uc010olt.1	-	11	1746	c.1598A>G	c.(1597-1599)CAG>CGG	p.Q533R	CCDC17_uc009vxy.2_Missense_Mutation_p.Q501R|CCDC17_uc010ols.1_Missense_Mutation_p.Q524R|CCDC17_uc001com.3_Missense_Mutation_p.Q354R|CCDC17_uc001con.3_RNA|CCDC17_uc009vxz.2_Intron	NM_001114938	NP_001108410	Q96LX7	CCD17_HUMAN	coiled-coil domain containing 17	533										ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CACACTCACCTGAGGAATCCC	0.592													9	12					0	0	1	0	0	
MAST2	23139	broad.mit.edu	37	1	46498028	46498028	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:46498028C>T	uc001cov.2	+	25	3649	c.3366C>T	c.(3364-3366)CGC>CGT	p.R1122R	MAST2_uc001cow.2_Silent_p.R1122R|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1122	PDZ.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GGGCCATTCGCGTCTACATGG	0.572													20	38					0	0	1	0	0	
C1orf190	541468	broad.mit.edu	37	1	46685377	46685377	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:46685377C>A	uc010oma.1	+	2	298	c.205C>A	c.(205-207)CTG>ATG	p.L69M	POMGNT1_uc001cpg.2_5'UTR|POMGNT1_uc001cpf.2_5'UTR	NM_001013615	NP_001013633	Q96LR2	CA190_HUMAN	hypothetical protein LOC541468	69					positive regulation of cytokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm				ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCAGGCTTACCTGCGAGCCAT	0.592													24	72					5.45024e-15	6.04816e-15	1	1	0	
CYP4B1	1580	broad.mit.edu	37	1	47280902	47280902	+	Missense_Mutation	SNP	C	T	T	rs56180718		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:47280902C>T	uc001cqm.3	+	8	1120	c.1036C>T	c.(1036-1038)CGC>TGC	p.R346C	CYP4B1_uc009vyl.1_Missense_Mutation_p.R183C|CYP4B1_uc001cqn.3_Missense_Mutation_p.R347C|CYP4B1_uc009vym.2_Missense_Mutation_p.R332C|CYP4B1_uc010omk.1_Missense_Mutation_p.R183C	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	346					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					AGAGGAGGTCCGCGAGATCCT	0.582													6	30					0	0	1	0	0	
FAM151A	338094	broad.mit.edu	37	1	55075225	55075225	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:55075225G>A	uc001cxn.2	-	8	1606	c.1474C>T	c.(1474-1476)CAG>TAG	p.Q492*	ACOT11_uc001cxj.1_3'UTR|ACOT11_uc001cxl.1_3'UTR|ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	492						integral to membrane					0						GTGAGCAGCTGTTCCCTGTAG	0.617													37	63					0	0	1	0	0	
LEPR	3953	broad.mit.edu	37	1	66102677	66102677	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:66102677G>T	uc001dci.2	+	20	3679	c.3477G>T	c.(3475-3477)AAG>AAT	p.K1159N	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1159	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGGAAAACAAGATGTGTGACC	0.338													17	48					5.01169e-05	5.16892e-05	1	1	0	
DIRAS3	9077	broad.mit.edu	37	1	68512858	68512858	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:68512858C>A	uc001ded.2	-	2	418	c.123G>T	c.(121-123)GTG>GTT	p.V41V	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	41					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						TGCCGACTACCACGACGCGGT	0.582													38	80					9.8876e-21	1.11607e-20	1	1	0	
FUBP1	8880	broad.mit.edu	37	1	78414859	78414859	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:78414859T>G	uc001dii.2	-	19	1996	c.1907A>C	c.(1906-1908)CAG>CCG	p.Q636P	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.Q657P	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	636					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						TGGAGGATGCTGTGGCATTCC	0.458													29	83					0	0	1	0	0	
LPAR3	23566	broad.mit.edu	37	1	85331255	85331255	+	Silent	SNP	G	A	A	rs144051702	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:85331255G>A	uc001dkl.2	-	1	588	c.549C>T	c.(547-549)TAC>TAT	p.Y183Y	LPAR3_uc009wcj.1_Silent_p.Y183Y	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	183	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						AACTCCTGCTGTAAATGGGGG	0.537													26	57					0	0	1	0	0	
GBP6	163351	broad.mit.edu	37	1	89844152	89844152	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:89844152A>G	uc001dnf.2	+	5	879	c.605A>G	c.(604-606)AAT>AGT	p.N202S	GBP6_uc010ost.1_Missense_Mutation_p.N72S	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	202							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		TACCTGGAGAATGCCTTGAAG	0.488													20	36					0	0	1	0	0	
LRRC8D	55144	broad.mit.edu	37	1	90399416	90399416	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:90399416T>C	uc001dnm.2	+	3	1214	c.789T>C	c.(787-789)GCT>GCC	p.A263A	LRRC8D_uc001dnn.2_Silent_p.A263A	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	263						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		AATTTTCAGCTGAGAAGCCTG	0.478													4	27					0	0	1	0	0	
KIAA1324	57535	broad.mit.edu	37	1	109741246	109741246	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:109741246C>T	uc001dwq.2	+	19	2587	c.2451C>T	c.(2449-2451)CGC>CGT	p.R817R	KIAA1324_uc009wex.1_Silent_p.R767R|KIAA1324_uc009wey.2_Silent_p.R730R|KIAA1324_uc010ovg.1_Silent_p.R715R|KIAA1324_uc001dwr.2_Silent_p.R467R|KIAA1324_uc001dws.1_RNA|KIAA1324_uc009wez.1_RNA	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	817	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CCACCATCCGCGTCAGGTGCA	0.532													10	11					0	0	1	0	0	
EPS8L3	79574	broad.mit.edu	37	1	110301862	110301862	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:110301862C>A	uc001dyr.1	-	5	548	c.403G>T	c.(403-405)GGG>TGG	p.G135W	EPS8L3_uc001dys.1_Missense_Mutation_p.G135W|EPS8L3_uc001dyq.1_Missense_Mutation_p.G135W|EPS8L3_uc009wfm.1_Missense_Mutation_p.G101W|EPS8L3_uc009wfn.1_Missense_Mutation_p.G101W|EPS8L3_uc009wfo.1_Missense_Mutation_p.G82W	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	135						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		CCACTCACCCCCACTTCCTGG	0.493													51	93					9.52127e-25	1.08168e-24	1	1	0	
AHCYL1	10768	broad.mit.edu	37	1	110551702	110551702	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:110551702C>T	uc001dyx.2	+	2	534	c.167C>T	c.(166-168)ACC>ATC	p.T56I	AHCYL1_uc010ovw.1_Missense_Mutation_p.T9I|AHCYL1_uc001dyy.2_Missense_Mutation_p.T9I|AHCYL1_uc010ovx.1_Missense_Mutation_p.T9I	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	56					one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		AAATTCCCCACCAAAACTGGC	0.423													17	39					0	0	1	0	0	
KCNC4	3749	broad.mit.edu	37	1	110754325	110754325	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:110754325C>T	uc001dzh.2	+	1	261	c.204C>T	c.(202-204)CCC>CCT	p.P68P	KCNC4_uc001dzf.2_Silent_p.P68P|KCNC4_uc009wfr.2_Silent_p.P68P|KCNC4_uc001dzg.2_Silent_p.P68P|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	68	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		TGGCCGACCCCGACGGCGGGG	0.527													5	14					0	0	1	0	0	
OTUD7B	56957	broad.mit.edu	37	1	149916658	149916658	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:149916658C>T	uc001etn.2	-	12	1986	c.1630G>A	c.(1630-1632)GGC>AGC	p.G544S		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	544					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			GTCTCAGTGCCGCTGCTTCCT	0.582													54	90					0	0	1	0	0	
PSMB4	5692	broad.mit.edu	37	1	151373273	151373273	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:151373273C>T	uc001eyc.1	+	4	551	c.528C>T	c.(526-528)GCC>GCT	p.A176A	PSMB4_uc010pda.1_3'UTR|PSMB4_uc001eyb.1_3'UTR	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	176					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TTGGTGTAGCCTATGAAGCCC	0.323													69	155					0	0	1	0	0	
INTS3	65123	broad.mit.edu	37	1	153740271	153740271	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:153740271C>A	uc009wom.2	+	22	2433	c.2212C>A	c.(2212-2214)CTG>ATG	p.L738M	INTS3_uc001fct.2_Missense_Mutation_p.L738M|INTS3_uc001fcu.2_Missense_Mutation_p.L430M|INTS3_uc001fcv.2_Missense_Mutation_p.L532M|INTS3_uc010peb.1_Missense_Mutation_p.L532M|INTS3_uc001fcw.2_Missense_Mutation_p.L251M|INTS3_uc010pec.1_Missense_Mutation_p.L251M|INTS3_uc001fcy.2_Missense_Mutation_p.L35M|INTS3_uc001fcx.2_Missense_Mutation_p.L35M	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	739					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TGTGCGGCTCCTGTGCCACCT	0.592													30	44					1.7881e-09	1.92143e-09	1	1	0	
GATAD2B	57459	broad.mit.edu	37	1	153785764	153785764	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:153785764G>A	uc001fdb.3	-	8	1625	c.1381C>T	c.(1381-1383)CTG>TTG	p.L461L		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	461	Potential.|GATA-type.|CR2.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCATTTTTCAGCCGGTTGGTG	0.473													13	80					0	0	1	0	0	
ASH1L	55870	broad.mit.edu	37	1	155340428	155340428	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:155340428C>G	uc009wqq.2	-	12	7048	c.6568G>C	c.(6568-6570)GAG>CAG	p.E2190Q	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.E2185Q	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2190	SET.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGATACTGCTCAATCATCCTG	0.393													6	68					0	0	1	0	0	
GON4L	54856	broad.mit.edu	37	1	155735282	155735282	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:155735282C>T	uc001flz.2	-	21	4079	c.3982G>A	c.(3982-3984)GAA>AAA	p.E1328K	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.E1328K|GON4L_uc009wrh.1_Missense_Mutation_p.E1328K|GON4L_uc001fma.1_Missense_Mutation_p.E1328K|GON4L_uc001fmb.3_Missense_Mutation_p.E524K|GON4L_uc001fmc.2_Missense_Mutation_p.E1328K|GON4L_uc001fmd.3_Missense_Mutation_p.E1328K|GON4L_uc009wri.2_Missense_Mutation_p.E914K	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1328					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TCTTCAGGTTCCATCTTGACA	0.517													26	56					0	0	1	0	0	
UBQLN4	56893	broad.mit.edu	37	1	156013976	156013976	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:156013976G>A	uc001fna.2	-	6	963	c.939C>T	c.(937-939)TCC>TCT	p.S313S	UBQLN4_uc010pgx.1_Silent_p.S293S	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	313						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					ATGAGCTGTCGGAGTTCCCGG	0.627													3	2					0	0	1	0	0	
PRCC	5546	broad.mit.edu	37	1	156756452	156756452	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:156756452T>C	uc001fqa.2	+	3	859	c.569T>C	c.(568-570)CTG>CCG	p.L190P	PRCC_uc001fqb.2_Missense_Mutation_p.L190P	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	190					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTAAAAACCTGACTGTGAAA	0.542			T	TFE3	papillary renal 								34	60					0	0	1	0	0	
PEAR1	375033	broad.mit.edu	37	1	156877817	156877817	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:156877817C>T	uc001fqj.1	+	8	992	c.876C>T	c.(874-876)CGC>CGT	p.R292R	PEAR1_uc009wsl.1_Silent_p.R93R|PEAR1_uc001fqk.1_5'UTR	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	292	EGF-like 3.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGCAGTGCCGCTGCGCTCCGG	0.697													3	4					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158639341	158639341	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:158639341G>A	uc001fst.1	-	14	1889	c.1690C>T	c.(1690-1692)CGG>TGG	p.R564W		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	564	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGGGCATCCCGCCGGGCTAAC	0.488													43	112					0	0	1	0	0	
DUSP27	92235	broad.mit.edu	37	1	167096269	167096269	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:167096269G>A	uc001geb.1	+	5	1901	c.1901G>A	c.(1900-1902)CGG>CAG	p.R634Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	634					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAGAGAAGCCGGCAGACGCTG	0.637													12	18					0	0	1	0	0	
ADCY10	55811	broad.mit.edu	37	1	167778932	167778932	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:167778932C>T	uc001ger.2	-	33	5114	c.4816G>A	c.(4816-4818)GTG>ATG	p.V1606M	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.V1514M|ADCY10_uc010plj.1_Missense_Mutation_p.V1453M	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1606					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGATTGTCCACGGTATTAGCT	0.388													21	60					0	0	1	0	0	
SLC9A11	284525	broad.mit.edu	37	1	173516835	173516835	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:173516835A>G	uc001giz.2	-	13	1973	c.1550T>C	c.(1549-1551)ATA>ACA	p.I517T	SLC9A11_uc009wwe.2_Missense_Mutation_p.I75T|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	517					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AACCATTTGTATTGCAGCTAC	0.363													15	35					0	0	1	0	0	
PAPPA2	60676	broad.mit.edu	37	1	176762727	176762727	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:176762727C>T	uc001gkz.2	+	20	6216	c.5052C>T	c.(5050-5052)CCC>CCT	p.P1684P	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1684	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTGTAATCCCCCCCAGTGACC	0.468													14	29					0	0	1	0	0	
ASTN1	460	broad.mit.edu	37	1	177133715	177133715	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:177133715A>G	uc001glc.2	-	1	310	c.98T>C	c.(97-99)CTG>CCG	p.L33P	ASTN1_uc001glb.1_Missense_Mutation_p.L33P|ASTN1_uc001gld.1_Missense_Mutation_p.L33P|ASTN1_uc009wwx.1_Missense_Mutation_p.L33P	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	33					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CTTGCACTCCAGCTCCTTGGA	0.677													10	12					0	0	1	0	0	
ASPM	259266	broad.mit.edu	37	1	197069737	197069737	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:197069737A>G	uc001gtu.2	-	18	8901	c.8644T>C	c.(8644-8646)TAT>CAT	p.Y2882H	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.Y730H	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2882	IQ 32.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GCTTTTCTATATAGTAAAAAC	0.368													7	34					0	0	1	0	0	
DDX59	83479	broad.mit.edu	37	1	200635327	200635327	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:200635327T>G	uc009wzk.2	-	2	785	c.542A>C	c.(541-543)CAG>CCG	p.Q181P	DDX59_uc010ppl.1_Missense_Mutation_p.Q181P	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	181						intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ATTTTCAATCTGGTCTTCCTG	0.438													50	56					0	0	1	0	0	
PKP1	5317	broad.mit.edu	37	1	201252870	201252870	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:201252870T>C	uc001gwd.2	+	1	291	c.40T>C	c.(40-42)TGC>CGC	p.C14R	PKP1_uc001gwe.2_Missense_Mutation_p.C14R|PKP1_uc009wzm.2_5'UTR	NM_000299	NP_000290	Q13835	PKP1_HUMAN	plakophilin 1 isoform 1b	14					cell adhesion|cellular component disassembly involved in apoptosis|multicellular organismal development	desmosome|intermediate filament|nucleus	intermediate filament binding|signal transducer activity|structural constituent of epidermis			ovary(2)	2						GGCGTACGAATGCTTCCAGGA	0.642													16	28					0	0	1	0	0	
TMCC2	9911	broad.mit.edu	37	1	205238321	205238321	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:205238321C>T	uc001hbz.1	+	4	1435	c.991C>T	c.(991-993)CGC>TGC	p.R331C	TMCC2_uc010prf.1_Missense_Mutation_p.R253C|TMCC2_uc001hca.2_Missense_Mutation_p.R106C|TMCC2_uc001hcb.1_Missense_Mutation_p.R91C|TMCC2_uc001hcc.1_Translation_Start_Site|TMCC2_uc001hcd.2_Missense_Mutation_p.R98C	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	331						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GCAGGTGTCACGCATCAAGCA	0.557													20	34					0	0	1	0	0	
LAMB3	3914	broad.mit.edu	37	1	209807792	209807792	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:209807792C>G	uc001hhg.2	-	5	954	c.564G>C	c.(562-564)AAG>AAC	p.K188N	LAMB3_uc009xco.2_Missense_Mutation_p.K188N|LAMB3_uc001hhh.2_Missense_Mutation_p.K188N|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Intron	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	188	Laminin N-terminal.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTCTACCTACCTTCCCCCCAT	0.602													12	39					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	215848449	215848449	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:215848449T>C	uc001hku.1	-	63	13191	c.12804A>G	c.(12802-12804)CCA>CCG	p.P4268P		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4268	Fibronectin type-III 28.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		atatcacaggtggagagagac	0.348										HNSCC(13;0.011)			19	43					0	0	1	0	0	
LBR	3930	broad.mit.edu	37	1	225591060	225591060	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:225591060G>A	uc001hoy.2	-	14	1936	c.1793C>T	c.(1792-1794)GCT>GTT	p.A598V	LBR_uc001hoz.2_Missense_Mutation_p.A598V	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	598					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		CTTTTCCCAAGCCACGCCGTA	0.433													34	53					0	0	1	0	0	
CABC1	56997	broad.mit.edu	37	1	227171866	227171866	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:227171866T>C	uc001hqm.1	+	16	4747	c.1328T>C	c.(1327-1329)CTG>CCG	p.L443P	CABC1_uc001hqn.1_Missense_Mutation_p.L443P|CABC1_uc009xeq.1_Missense_Mutation_p.L391P|CABC1_uc010pvq.1_Missense_Mutation_p.L164P|CABC1_uc010pvr.1_Missense_Mutation_p.L117P|CABC1_uc001hqo.1_Missense_Mutation_p.L164P|CABC1_uc009xer.1_5'UTR	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	443	Protein kinase.				cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				CCACATGTGCTGACCACAGAG	0.622													18	25					0	0	1	0	0	
GJC2	57165	broad.mit.edu	37	1	228346746	228346746	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:228346746C>T	uc001hsk.2	+	2	1462	c.1287C>T	c.(1285-1287)AGC>AGT	p.S429S		NM_020435	NP_065168	Q5T442	CXG2_HUMAN	gap junction protein, gamma 2, 47kDa	429	Cytoplasmic (Potential).				cell death	connexon complex|integral to membrane					0		Prostate(94;0.0405)				GCAGTGCCAGCAGCAGGGACG	0.716													14	23					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228464704	228464704	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:228464704C>T	uc009xez.1	+	23	6605	c.6561C>T	c.(6559-6561)TGC>TGT	p.C2187C	OBSCN_uc001hsn.2_Silent_p.C2187C|OBSCN_uc001hsp.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2187	Ig-like 22.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCCTGGAGTGCGAGCTGTCGC	0.647													4	5					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228560646	228560646	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:228560646G>C	uc009xez.1	+	94	22211	c.22167G>C	c.(22165-22167)TGG>TGC	p.W7389C	OBSCN_uc001hsr.1_Missense_Mutation_p.W2018C	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7389					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGCGCAAGTGGTCCTCGCCGT	0.667													4	17					0	0	1	0	0	
PCNXL2	80003	broad.mit.edu	37	1	233120211	233120211	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:233120211G>A	uc001hvl.2	-	34	6488	c.6253C>T	c.(6253-6255)CCA>TCA	p.P2085S	PCNXL2_uc001hvk.1_3'UTR|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	2085						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GGCTCACATGGCTCGGAGAGG	0.582													13	39					0	0	1	0	0	
KIAA1804	84451	broad.mit.edu	37	1	233514948	233514948	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:233514948G>T	uc001hvt.3	+	9	2457	c.2196G>T	c.(2194-2196)TCG>TCT	p.S732S	KIAA1804_uc001hvu.3_Silent_p.S178S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	732					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TTCTGGCATCGGTGGCTCTGG	0.522													28	58					3.73988e-18	4.18104e-18	1	1	0	
SLC35F3	148641	broad.mit.edu	37	1	234367306	234367306	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:234367306C>T	uc001hwa.1	+	2	448	c.220C>T	c.(220-222)CTG>TTG	p.L74L	SLC35F3_uc001hvy.1_Silent_p.L143L	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	74	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GGCGGTCGTGCTGTGCGTGTG	0.687													8	150					0	0	1	0	0	
ACTN2	88	broad.mit.edu	37	1	236925859	236925859	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:236925859G>A	uc001hyf.2	+	21	2829	c.2625G>A	c.(2623-2625)GTG>GTA	p.V875V	ACTN2_uc001hyg.2_Silent_p.V667V|ACTN2_uc009xgi.1_Silent_p.V875V|ACTN2_uc010pxu.1_Silent_p.V564V|ACTN2_uc001hyh.2_Silent_p.V563V	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	875					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CAGGCAGTGTGCCTGGTGCAC	0.592													8	23					0	0	1	0	0	
PPPDE1	51029	broad.mit.edu	37	1	244855310	244855310	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:244855310A>G	uc001iao.2	+	4	603	c.339A>G	c.(337-339)TCA>TCG	p.S113S	PPPDE1_uc001iap.2_Silent_p.S80S	NM_016076	NP_057160	Q9BSY9	PPDE1_HUMAN	PPPDE peptidase domain containing 1	113	PPPDE peptidase.									breast(3)	3						ATTTTTCTTCAGCTTTATCAG	0.294													13	28					0	0	1	0	0	
CNST	163882	broad.mit.edu	37	1	246810999	246810999	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:246810999C>T	uc001ibp.2	+	9	1874	c.1496C>T	c.(1495-1497)GCG>GTG	p.A499V	CNST_uc001ibo.3_Missense_Mutation_p.A499V	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	499					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						TCACCACAGGCGCAGGCTGAC	0.478													22	56					0	0	1	0	0	
AHCTF1	25909	broad.mit.edu	37	1	247025328	247025328	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:247025328G>A	uc001ibu.1	-	27	3675	c.3668C>T	c.(3667-3669)CCT>CTT	p.P1223L	AHCTF1_uc001ibv.1_Missense_Mutation_p.P1232L|AHCTF1_uc009xgs.1_Missense_Mutation_p.P84L|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1223	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AAGTCGTTGAGGAGACCTTCC	0.418													11	30					0	0	1	0	0	
TRIM58	25893	broad.mit.edu	37	1	248028188	248028188	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:248028188C>T	uc001ido.2	+	3	746	c.698C>T	c.(697-699)GCG>GTG	p.A233V		NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	233	Potential.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AAGGAGCTGGCGGATGAGCTG	0.672													7	5					0	0	1	0	0	
OR2T8	343172	broad.mit.edu	37	1	248084594	248084594	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:248084594G>A	uc010pzc.1	+	1	275	c.275G>A	c.(274-276)CGC>CAC	p.R92H		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GCCATCTCCCGCGCTGGCTGT	0.582													10	20					0	0	1	0	0	
OR2T33	391195	broad.mit.edu	37	1	248436842	248436842	+	Missense_Mutation	SNP	C	T	T	rs151096305	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:248436842C>T	uc010pzi.1	-	1	275	c.275G>A	c.(274-276)CGC>CAC	p.R92H		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACAGCCAGCGCGGGAGATGGC	0.572													17	76					0	0	1	0	0	
TUBB8	347688	broad.mit.edu	37	10	93397	93397	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:93397G>A	uc001ifi.2	-	4	935	c.935C>T	c.(934-936)ACG>ATG	p.T312M	TUBB8_uc009xhe.2_Missense_Mutation_p.T275M|TUBB8_uc010pzs.1_Missense_Mutation_p.T240M	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	312					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		GGCAGCCGCCGTTAGGTAGCG	0.537													41	97					0	0	1	0	0	
KLF6	1316	broad.mit.edu	37	10	3824017	3824017	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:3824017G>A	uc001iha.2	-	2	759	c.492C>T	c.(490-492)TGC>TGT	p.C164C	KLF6_uc010qaj.1_Silent_p.C164C|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Silent_p.C164C|KLF6_uc001ihb.2_Silent_p.C164C	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	164					B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		CCCCGGGCACGCAACCCCACA	0.627											OREG0019980	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	81					0	0	1	0	0	
C10orf18	54906	broad.mit.edu	37	10	5769037	5769037	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:5769037G>A	uc001iij.2	+	10	1063	c.438G>A	c.(436-438)AAG>AAA	p.K146K		NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	146										ovary(1)|central_nervous_system(1)	2						TTGGAGGCAAGCAGATGGGTC	0.284													26	58					0	0	1	0	0	
PRPF18	8559	broad.mit.edu	37	10	13639491	13639491	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:13639491G>A	uc001imp.2	+	2	248	c.100G>A	c.(100-102)GCC>ACC	p.A34T	PRPF18_uc001imq.2_Intron	NM_003675	NP_003666	Q99633	PRP18_HUMAN	PRP18 pre-mRNA processing factor 18 homolog	34					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex				central_nervous_system(1)	1						TAGTGAGCTCGCCAAAAAAGA	0.289													3	22					0	0	1	0	0	
FAM107B	83641	broad.mit.edu	37	10	14816397	14816397	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:14816397G>A	uc001ina.1	-	1	500	c.266C>T	c.(265-267)GCG>GTG	p.A89V	FAM107B_uc010qbu.1_RNA	NM_031453	NP_113641	Q9H098	F107B_HUMAN	hypothetical protein LOC83641	Error:Variant_position_missing_in_Q9H098_after_alignment										breast(4)	4						ATTCCGATTCGCACTGCCATT	0.602													74	136					0	0	1	0	0	
TRDMT1	1787	broad.mit.edu	37	10	17201173	17201173	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:17201173T>C	uc001iop.2	-	7	563	c.515A>G	c.(514-516)GAG>GGG	p.E172G	TRDMT1_uc001ioq.2_Missense_Mutation_p.E148G|TRDMT1_uc001ior.2_Missense_Mutation_p.E126G|TRDMT1_uc001ios.2_Missense_Mutation_p.E101G|TRDMT1_uc009xjt.2_Missense_Mutation_p.E91G|TRDMT1_uc010qcc.1_Missense_Mutation_p.E101G|TRDMT1_uc010qcd.1_Intron|TRDMT1_uc009xjs.1_Missense_Mutation_p.E89G|TRDMT1_uc009xju.1_RNA	NM_004412	NP_004403	O14717	TRDMT_HUMAN	tRNA aspartic acid methyltransferase 1 isoform	172					tRNA processing	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|RNA binding			ovary(1)	1						GGGTAATGGCTCTGACTGAAG	0.308													20	52					0	0	1	0	0	
ENKUR	219670	broad.mit.edu	37	10	25273749	25273749	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:25273749T>C	uc001isg.1	-	5	845	c.680A>G	c.(679-681)AAG>AGG	p.K227R	ENKUR_uc001ish.1_Missense_Mutation_p.K165R	NM_145010	NP_659447	Q8TC29	ENKUR_HUMAN	enkurin	227						cilium|flagellum	calmodulin binding|SH3 domain binding				0						CAGCCTCTGCTTGCGGATCTT	0.388													17	34					0	0	1	0	0	
ARMC4	55130	broad.mit.edu	37	10	28233746	28233746	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:28233746T>C	uc009xky.2	-	11	1630	c.1532A>G	c.(1531-1533)AAG>AGG	p.K511R	ARMC4_uc010qds.1_Missense_Mutation_p.K36R|ARMC4_uc010qdt.1_Missense_Mutation_p.K203R|ARMC4_uc001itz.2_Missense_Mutation_p.K511R|ARMC4_uc010qdu.1_Missense_Mutation_p.K203R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	511	ARM 1.						binding			ovary(4)|skin(2)	6						GCCACTCACCTTACATTTGAC	0.493													32	72					0	0	1	0	0	
LYZL1	84569	broad.mit.edu	37	10	29599965	29599965	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:29599965A>G	uc001iul.2	+	5	619	c.562A>G	c.(562-564)AAA>GAA	p.K188E		NM_032517	NP_115906	Q6UWQ5	LYZL1_HUMAN	lysozyme-like 1	142					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Breast(68;0.203)				GTCCGAGTGGAAAAAAGGCTG	0.512													47	94					0	0	1	0	0	
SVIL	6840	broad.mit.edu	37	10	29747513	29747513	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:29747513C>T	uc001iut.1	-	37	7161	c.6408G>A	c.(6406-6408)ACG>ACA	p.T2136T	LOC387647_uc001iuo.1_Intron|LOC387647_uc001iup.2_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Silent_p.T1050T|SVIL_uc001iuu.1_Silent_p.T1710T	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	2136					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TGGAAACTTCCGTGTCCTAGA	0.542													36	50					0	0	1	0	0	
SVIL	6840	broad.mit.edu	37	10	29813557	29813557	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:29813557G>A	uc001iut.1	-	14	3183	c.2430C>T	c.(2428-2430)TCC>TCT	p.S810S	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Silent_p.S384S	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	810					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TTAGAGTGGAGGAATCAGGTT	0.468													52	84					0	0	1	0	0	
ZEB1	6935	broad.mit.edu	37	10	31809766	31809766	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:31809766C>T	uc001ivs.3	+	7	1566	c.1503C>T	c.(1501-1503)AAC>AAT	p.N501N	ZEB1_uc001ivr.3_Silent_p.N283N|ZEB1_uc010qee.1_Silent_p.N283N|ZEB1_uc010qef.1_Silent_p.N283N|ZEB1_uc009xlj.1_Silent_p.N427N|ZEB1_uc010qeg.1_Silent_p.N360N|ZEB1_uc009xlk.1_Silent_p.N283N|ZEB1_uc001ivt.3_Silent_p.N283N|ZEB1_uc001ivu.3_Silent_p.N502N|ZEB1_uc001ivv.3_Silent_p.N481N|ZEB1_uc010qeh.1_Silent_p.N434N|ZEB1_uc009xlo.1_Silent_p.N484N|ZEB1_uc009xlp.2_Silent_p.N485N	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	501					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TCGCTACAAACAGTTGTAAAA	0.378													27	46					0	0	1	0	0	
ZEB1	6935	broad.mit.edu	37	10	31815922	31815922	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:31815922C>T	uc001ivs.3	+	9	3168	c.3105C>T	c.(3103-3105)GAC>GAT	p.D1035D	ZEB1_uc001ivr.3_Silent_p.D817D|ZEB1_uc010qee.1_Silent_p.D817D|ZEB1_uc010qef.1_Silent_p.D817D|ZEB1_uc001ivt.3_Silent_p.D817D|ZEB1_uc001ivu.3_Silent_p.D1036D|ZEB1_uc001ivv.3_Silent_p.D1015D|ZEB1_uc010qeh.1_Silent_p.D968D|ZEB1_uc009xlp.2_Silent_p.D1019D	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1035	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AGGATGAAGACAGTgaaaaag	0.299													8	14					0	0	1	0	0	
PARD3	56288	broad.mit.edu	37	10	34626308	34626308	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:34626308C>A	uc010qej.1	-	17	2464	c.2464G>T	c.(2464-2466)GGA>TGA	p.G822*	PARD3_uc010qek.1_Nonsense_Mutation_p.G819*|PARD3_uc010qel.1_Nonsense_Mutation_p.G822*|PARD3_uc010qem.1_Nonsense_Mutation_p.G806*|PARD3_uc010qen.1_Nonsense_Mutation_p.G806*|PARD3_uc010qeo.1_Nonsense_Mutation_p.G806*|PARD3_uc010qep.1_Nonsense_Mutation_p.G762*|PARD3_uc010qeq.1_Nonsense_Mutation_p.G762*|PARD3_uc001ixo.1_Nonsense_Mutation_p.G536*|PARD3_uc001ixp.1_Nonsense_Mutation_p.G684*|PARD3_uc001ixq.1_Nonsense_Mutation_p.G806*|PARD3_uc001ixr.1_Nonsense_Mutation_p.G819*|PARD3_uc001ixt.1_Nonsense_Mutation_p.G640*|PARD3_uc001ixu.1_Nonsense_Mutation_p.G765*|PARD3_uc001ixs.1_Nonsense_Mutation_p.G475*	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	822	Interacts with PRKCZ (By similarity).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CGTCCAAATCCTTCTCGTTGA	0.343													17	27					1.15088e-07	1.21072e-07	1	1	0	
GDF10	2662	broad.mit.edu	37	10	48438501	48438501	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:48438501G>A	uc001jfb.2	-	1	666	c.210C>T	c.(208-210)AGC>AGT	p.S70S	GDF10_uc009xnp.2_Silent_p.S70S|GDF10_uc009xnq.1_Silent_p.S70S	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	70					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						TGTCCTGGGCGCTGGGGCCCA	0.741													3	9					0	0	1	0	0	
AGAP7	653268	broad.mit.edu	37	10	51465445	51465445	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:51465445G>A	uc001jio.2	-	7	1137	c.1011C>T	c.(1009-1011)AGC>AGT	p.S337S	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	337	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						ATAGGCCATCGCTTTTAGAGC	0.542													30	146					0	0	1	0	0	
SGMS1	259230	broad.mit.edu	37	10	52067830	52067830	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:52067830G>A	uc001jje.2	-	10	1928	c.974C>T	c.(973-975)GCG>GTG	p.A325V	SGMS1_uc010qhk.1_Missense_Mutation_p.A156V	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	331	Cytoplasmic (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GTGGTCATGCGCTAAGAGAAT	0.502													34	51					0	0	1	0	0	
ZNF365	22891	broad.mit.edu	37	10	64159485	64159485	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:64159485C>T	uc001jly.3	+	5	1268	c.1206C>T	c.(1204-1206)CGC>CGT	p.R402R	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Silent_p.R387R|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					GGTTTGGCCGCAAAGGCAACA	0.537													24	47					0	0	1	0	0	
AIFM2	84883	broad.mit.edu	37	10	71874701	71874701	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:71874701C>T	uc010qjg.1	-	7	958	c.945G>A	c.(943-945)CAG>CAA	p.Q315Q	AIFM2_uc001jqp.1_Silent_p.Q315Q	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	315					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						GGAGAGGCCGCTGCTTCACAG	0.562													9	19					0	0	1	0	0	
DNAJB12	54788	broad.mit.edu	37	10	74114697	74114697	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:74114697G>T	uc010qjv.1	-	1	211	c.61C>A	c.(61-63)CGC>AGC	p.R21S	DNAJB12_uc001jsz.2_Missense_Mutation_p.R21S|DNAJB12_uc001jta.2_Missense_Mutation_p.R21S	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	Error:Variant_position_missing_in_Q9NXW2_after_alignment					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						GAGGCCGGGCGAGCGAAGGGC	0.672													11	29					5.50884e-06	5.72658e-06	1	1	0	
AGAP11	119385	broad.mit.edu	37	10	88769420	88769420	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:88769420C>T	uc001kee.2	+	12	2615	c.1411C>T	c.(1411-1413)CTG>TTG	p.L471L	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	471					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CATCCTGCTGCTGGCACATGG	0.662													74	139					0	0	1	0	0	
HTR7	3363	broad.mit.edu	37	10	92617113	92617113	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:92617113C>T	uc001kha.2	-	1	559	c.316G>A	c.(316-318)GTG>ATG	p.V106M	HTR7_uc001kgz.2_Missense_Mutation_p.V106M|HTR7_uc001khb.2_Missense_Mutation_p.V106M	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	106	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	ACGAAGCACACGGAGATCACC	0.607													33	58					0	0	1	0	0	
ZDHHC16	84287	broad.mit.edu	37	10	99211554	99211554	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:99211554A>T	uc001knj.2	+	3	471	c.122A>T	c.(121-123)TAC>TTC	p.Y41F	ZDHHC16_uc001knp.2_Missense_Mutation_p.Y41F|ZDHHC16_uc001knk.2_Missense_Mutation_p.Y41F|ZDHHC16_uc001knl.2_Missense_Mutation_p.Y41F|ZDHHC16_uc001knm.2_Missense_Mutation_p.Y41F|ZDHHC16_uc001knn.2_Missense_Mutation_p.Y41F|ZDHHC16_uc010qow.1_Missense_Mutation_p.Y41F|ZDHHC16_uc009xvq.2_RNA|ZDHHC16_uc001kno.2_Missense_Mutation_p.Y41F|ZDHHC16_uc009xvr.2_Missense_Mutation_p.Y41F	NM_198046	NP_932163	Q969W1	ZDH16_HUMAN	Abl-philin 2 isoform 1	41	Cytoplasmic (Potential).				apoptosis	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;5.81e-10)|all cancers(201;4.19e-08)		CGCTGGCGCTACGGCAAGGTC	0.642													21	30					0	0	1	0	0	
SEC31B	25956	broad.mit.edu	37	10	102265915	102265915	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:102265915A>G	uc001krc.1	-	9	1028	c.926T>C	c.(925-927)GTG>GCG	p.V309A	SEC31B_uc010qpo.1_Missense_Mutation_p.V308A|SEC31B_uc001krd.1_5'UTR|SEC31B_uc001krf.1_5'UTR|SEC31B_uc001kre.1_5'UTR|SEC31B_uc001krg.1_5'UTR|SEC31B_uc010qpp.1_Missense_Mutation_p.V312A|SEC31B_uc009xwn.1_Missense_Mutation_p.V309A|SEC31B_uc009xwo.1_Missense_Mutation_p.V309A|SEC31B_uc010qpq.1_Missense_Mutation_p.V152A	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	309	WD 6.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GCACCACTGCACATCAAAGCA	0.512													43	58					0	0	1	0	0	
DPCD	25911	broad.mit.edu	37	10	103360978	103360978	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:103360978G>A	uc001ktn.2	+	4	294	c.289G>A	c.(289-291)GAC>AAC	p.D97N	hsa-mir-3158-1|MI0014186_5'Flank	NM_015448	NP_056263	Q9BVM2	DPCD_HUMAN	DPCD protein	97							protein binding			skin(1)	1						CATGCGCAAGGACACCAAGAT	0.547													30	64					0	0	1	0	0	
FBXL15	79176	broad.mit.edu	37	10	104181683	104181683	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:104181683T>C	uc001kvk.2	+	3	1663	c.347T>C	c.(346-348)CTG>CCG	p.L116P	PSD_uc001kvg.1_5'Flank|PSD_uc001kvh.1_5'Flank|PSD_uc009xxd.1_5'Flank|PSD_uc001kvi.1_5'Flank|FBXL15_uc001kvj.1_Missense_Mutation_p.L116P|FBXL15_uc001kvl.1_Missense_Mutation_p.L203P	NM_024326	NP_077302	Q9H469	FXL15_HUMAN	F-box and leucine-rich repeat protein 15	116	Interaction with SMURF1.				bone mineralization|dorsal/ventral pattern formation|G2/M transition of mitotic cell cycle|positive regulation of BMP signaling pathway|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding			kidney(1)	1		Colorectal(252;0.207)		Epithelial(162;1.19e-08)|all cancers(201;2.65e-07)		AATCCGCAGCTGCGGAGTGTG	0.721													3	13					0	0	1	0	0	
TAF5	6877	broad.mit.edu	37	10	105138238	105138238	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:105138238T>C	uc001kwv.2	+	3	1067	c.1044T>C	c.(1042-1044)AGT>AGC	p.S348S	TAF5_uc010qqq.1_Silent_p.S348S	NM_006951	NP_008882	Q15542	TAF5_HUMAN	TBP-associated factor 5	348					histone acetylation|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|transcription factor TFIID complex|transcription factor TFTC complex	protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;1.83e-09)|all cancers(201;1.4e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		TGCCGCGTAGTAAGCAACAGA	0.433													7	47					0	0	1	0	0	
C10orf79	80217	broad.mit.edu	37	10	105953694	105953694	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:105953694C>T	uc001kxw.2	-	11	1488	c.1372G>A	c.(1372-1374)GTA>ATA	p.V458I	C10orf79_uc001kxx.3_Missense_Mutation_p.V459I|C10orf79_uc001kxy.1_Missense_Mutation_p.V459I	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	458	WD 7.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTATCATATACGCTGATGAAG	0.552													36	48					0	0	1	0	0	
SORCS1	114815	broad.mit.edu	37	10	108923879	108923879	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:108923879C>A	uc001kym.2	-	1	414	c.406G>T	c.(406-408)GGG>TGG	p.G136W	SORCS1_uc001kyl.2_Missense_Mutation_p.G136W|SORCS1_uc009xxs.2_Missense_Mutation_p.G136W|SORCS1_uc001kyn.1_Missense_Mutation_p.G136W|SORCS1_uc001kyo.2_Missense_Mutation_p.G136W	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	136	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TCCTGCTGCCCTCCATCTCTT	0.687													15	78					7.21436e-19	8.09116e-19	1	1	0	
FAM160B1	57700	broad.mit.edu	37	10	116603660	116603660	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:116603660C>T	uc001lcb.2	+	7	1312	c.977C>T	c.(976-978)CCG>CTG	p.P326L	FAM160B1_uc001lcc.2_Missense_Mutation_p.P326L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	326										lung(1)	1						TCAGTGGATCCGTTAGATATT	0.458													20	64					0	0	1	0	0	
HSPA12A	259217	broad.mit.edu	37	10	118440716	118440716	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:118440716A>C	uc001lct.2	-	9	1079	c.974T>G	c.(973-975)GTC>GGC	p.V325G	HSPA12A_uc001lcu.2_Missense_Mutation_p.V242G	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	325							ATP binding			ovary(1)	1				all cancers(201;0.0158)		GATCTGATGGACTGTCAGGTC	0.502													17	40					0	0	1	0	0	
CPXM2	119587	broad.mit.edu	37	10	125506321	125506321	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:125506321G>A	uc001lhk.1	-	14	2555	c.2230C>T	c.(2230-2232)CGG>TGG	p.R744W	CPXM2_uc001lhj.2_Intron	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	744					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding	p.R744Q(1)		ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		AGCTTCAGCCGCCTGGCTGGC	0.577													18	56					0	0	1	0	0	
PTPRE	5791	broad.mit.edu	37	10	129847931	129847931	+	Splice_Site	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:129847931G>A	uc001lkb.2	+	6	699	c.420_splice	c.e6+1	p.N140_splice	PTPRE_uc009yat.2_Splice_Site_p.N151_splice|PTPRE_uc010qup.1_Splice_Site|PTPRE_uc009yau.2_Splice_Site_p.N140_splice|PTPRE_uc001lkc.1_Splice_Site|PTPRE_uc001lkd.2_Splice_Site_p.N82_splice|PTPRE_uc010quq.1_Splice_Site_p.N41_splice	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E						negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GGAGTTCAACGTGAGTGTGGG	0.547													19	21					0	0	1	0	0	
BET1L	51272	broad.mit.edu	37	11	205421	205421	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:205421G>A	uc001loe.2	-	4	318	c.217C>T	c.(217-219)CGC>TGC	p.R73C	BET1L_uc001lod.2_3'UTR	NM_001098787	NP_001092257	Q9NYM9	BET1L_HUMAN	blocked early in transport 1 homolog (S.	73	Cytoplasmic (Potential).|t-SNARE coiled-coil homology.				protein transport|retrograde transport, endosome to Golgi	endosome|SNARE complex	SNAP receptor activity				0		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;4.2e-27)|Epithelial(43;2.8e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.7e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTGGAAAAGCGCTTCACGCTC	0.517													16	33					0	0	1	0	0	
NLRP6	171389	broad.mit.edu	37	11	281297	281297	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:281297C>T	uc010qvs.1	+	4	1563	c.1563C>T	c.(1561-1563)ACC>ACT	p.T521T	NLRP6_uc010qvt.1_Silent_p.T521T	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	521						cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		TGCCCAGGACCGCGGCTGGCG	0.672													16	51					0	0	1	0	0	
C11orf35	256329	broad.mit.edu	37	11	555902	555902	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:555902C>T	uc001lpx.2	-	12	1469	c.1406G>A	c.(1405-1407)CGC>CAC	p.R469H	uc001lpy.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	469										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CGGAGTCTCGCGGCGTGGGAT	0.771													13	21					0	0	1	0	0	
DEAF1	10522	broad.mit.edu	37	11	687963	687963	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:687963G>A	uc001lqq.1	-	4	1305	c.612C>T	c.(610-612)CCC>CCT	p.P204P	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	204	SAND.				embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		GGCACCGTACGGGCAGCTCAC	0.552													18	35					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1262736	1262736	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:1262736G>A	uc009ycr.1	+	47	6831	c.6705G>A	c.(6703-6705)CAG>CAA	p.Q2235Q	MUC5B_uc001ltb.2_Silent_p.Q1545Q	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1542	7 X Cys-rich subdomain repeats.|Cys-rich subdomain 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACTTATGCCAGCAGCCTAAGG	0.582													11	16					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1271141	1271141	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:1271141C>A	uc009ycr.1	+	51	14576	c.14450C>A	c.(14449-14451)CCC>CAC	p.P4817H	MUC5B_uc001ltb.2_Missense_Mutation_p.P4347H	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4344	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCACCACACCCGTGGCCACC	0.627													48	104					1.35964e-18	1.52326e-18	1	1	0	
TNNI2	7136	broad.mit.edu	37	11	1862085	1862085	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:1862085G>A	uc010qxe.1	+	4	245	c.223G>A	c.(223-225)GCT>ACT	p.A75T	TNNI2_uc010qxc.1_Missense_Mutation_p.A73T|TNNI2_uc010qxd.1_Missense_Mutation_p.A73T	NM_001145841	NP_001139313	P48788	TNNI2_HUMAN	fast-twitch skeletal muscle troponin I isoform	75					muscle filament sliding|positive regulation of transcription, DNA-dependent|skeletal muscle contraction	cytosol|nucleus|troponin complex	actin binding|troponin T binding				0		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GATCGATGCGGCTGAAGAGGA	0.527													6	19					0	0	1	0	0	
TRIM6	117854	broad.mit.edu	37	11	5632278	5632278	+	Silent	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:5632278T>G	uc001mbc.1	+	8	1305	c.1173T>G	c.(1171-1173)GCT>GCG	p.A391A	HBG2_uc001mak.1_Intron|TRIM6-TRIM34_uc001mbf.2_Intron|TRIM6_uc009yeo.1_Silent_p.A365A|TRIM6_uc010qzj.1_Silent_p.A216A|TRIM6_uc001mbe.2_Silent_p.A216A|TRIM6_uc010qzk.1_Silent_p.A216A|TRIM6_uc010qzl.1_Silent_p.A216A|TRIM6_uc001mbd.2_Silent_p.A419A|TRIM6_uc001mbg.1_Silent_p.A216A|TRIM6_uc009yep.1_3'UTR	NM_058166	NP_477514	Q9C030	TRIM6_HUMAN	tripartite motif-containing 6 isoform 2	391	B30.2/SPRY.				protein trimerization	cytoplasm	zinc ion binding				0		Lung NSC(207;2.23e-07)|all_lung(207;1.81e-06)|Medulloblastoma(188;0.00225)|Breast(177;0.0101)|all_neural(188;0.0212)		Epithelial(150;1.12e-45)|BRCA - Breast invasive adenocarcinoma(625;0.00101)|LUSC - Lung squamous cell carcinoma(625;0.192)		ATCACAGTGCTTACTCCAGGT	0.478													31	79					0	0	1	0	0	
EIF4G2	1982	broad.mit.edu	37	11	10823308	10823308	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:10823308A>T	uc001mjc.2	-	14	1730	c.1313T>A	c.(1312-1314)CTC>CAC	p.L438H	EIF4G2_uc001mjb.2_Missense_Mutation_p.L232H|EIF4G2_uc009ygf.2_Missense_Mutation_p.L232H|EIF4G2_uc001mjd.2_Intron|EIF4G2_uc001mjf.1_Intron|SNORD97_uc009yge.2_5'Flank	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	438					cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GTTATGGTAGAGCTGGCTTAG	0.448													31	60					0	0	1	0	0	
ABCC8	6833	broad.mit.edu	37	11	17498278	17498278	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:17498278G>A	uc001mnc.2	-	1	172	c.46C>T	c.(46-48)CGG>TGG	p.R16W	ABCC8_uc010rcy.1_Missense_Mutation_p.R16W	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	16	Extracellular (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGGTCCACCCGGTAGGCGGCC	0.687													7	17					0	0	1	0	0	
PTPN5	84867	broad.mit.edu	37	11	18763931	18763931	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:18763931G>A	uc001mpd.2	-	7	1034	c.603C>T	c.(601-603)ATC>ATT	p.I201I	PTPN5_uc001mpb.2_Silent_p.I169I|PTPN5_uc001mpc.2_Silent_p.I201I|PTPN5_uc001mpe.2_Silent_p.I169I|PTPN5_uc010rdj.1_Silent_p.I145I|PTPN5_uc001mpf.2_Silent_p.I177I|PTPN5_uc010rdk.1_Silent_p.I146I	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	201						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						AGTCATCCTCGATCTTCTCCT	0.617													19	38					0	0	1	0	0	
CD44	960	broad.mit.edu	37	11	35219723	35219723	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:35219723T>C	uc001mvu.2	+	7	1286	c.852T>C	c.(850-852)GAT>GAC	p.D284D	CD44_uc001mvv.2_Silent_p.D241D|CD44_uc001mvw.2_Intron|CD44_uc001mvx.2_Intron|CD44_uc001mvy.2_Intron|CD44_uc001mwc.3_Intron|CD44_uc010rer.1_Intron|CD44_uc009ykh.2_Intron|CD44_uc010res.1_Intron|CD44_uc010ret.1_Intron|CD44_uc010reu.1_5'UTR	NM_000610	NP_000601	P16070	CD44_HUMAN	CD44 antigen isoform 1 precursor	284	Extracellular (Potential).|Stem.				cell-cell adhesion|cell-matrix adhesion|interferon-gamma-mediated signaling pathway|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation	cell surface|Golgi apparatus|integral to plasma membrane	collagen binding|hyaluronic acid binding|receptor activity			pancreas(1)	1	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)		Hyaluronidase(DB00070)	AAAATGAAGATGAAAGAGACA	0.428													24	37					0	0	1	0	0	
KIAA0652	9776	broad.mit.edu	37	11	46691079	46691079	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:46691079C>G	uc009yld.2	+	17	2157	c.1473C>G	c.(1471-1473)GAC>GAG	p.D491E	KIAA0652_uc001nda.2_Missense_Mutation_p.D524E|KIAA0652_uc001ndb.2_Missense_Mutation_p.D491E|KIAA0652_uc001ncz.2_Missense_Mutation_p.D454E|KIAA0652_uc001ndc.2_Missense_Mutation_p.D454E|KIAA0652_uc010rgv.1_Missense_Mutation_p.D375E	NM_001142673	NP_001136145	O75143	ATG13_HUMAN	autophagy-related protein 13 isoform 1	491					autophagic vacuole assembly	cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding				0				GBM - Glioblastoma multiforme(35;0.226)		TGGCTGAAGACTTGGTATGGA	0.502													26	37					0	0	1	0	0	
LRP4	4038	broad.mit.edu	37	11	46894694	46894694	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:46894694G>A	uc001ndn.3	-	30	4686	c.4540C>T	c.(4540-4542)CTG>TTG	p.L1514L	uc001ndl.2_RNA	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1514	Extracellular (Potential).|LDL-receptor class B 18.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		GGCCAACCCAGGTCTGTGTTG	0.552													25	55					0	0	1	0	0	
LRP4	4038	broad.mit.edu	37	11	46905424	46905424	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:46905424G>A	uc001ndn.3	-	19	2756	c.2610C>T	c.(2608-2610)GGC>GGT	p.G870G		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	870	Extracellular (Potential).|LDL-receptor class B 7.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CCACTCACCCGCCCATGGGTT	0.537													14	27					0	0	1	0	0	
OR8H3	390152	broad.mit.edu	37	11	55890155	55890155	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:55890155T>C	uc001nii.1	+	1	307	c.307T>C	c.(307-309)TGT>CGT	p.C103R		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					CCAGATGTTCTGTTTTGTCTT	0.433													131	211					0	0	1	0	0	
OR5R1	219479	broad.mit.edu	37	11	56185040	56185040	+	Silent	SNP	G	T	T	rs146417436		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:56185040G>T	uc010rji.1	-	1	669	c.669C>A	c.(667-669)GCC>GCA	p.A223A		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTAGGATAGCGGCAATAATAA	0.448													14	83					2.31682e-05	2.39891e-05	1	1	0	
DTX4	23220	broad.mit.edu	37	11	58949400	58949400	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:58949400G>A	uc001nns.2	+	2	657	c.400G>A	c.(400-402)GTA>ATA	p.V134I	DTX4_uc001nnr.2_Missense_Mutation_p.V28I	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	134	WWE 2.				Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				CTTTAGCTACGTAATTGACTT	0.592													34	61					0	0	1	0	0	
DTX4	23220	broad.mit.edu	37	11	58949530	58949530	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:58949530G>A	uc001nns.2	+	2	787	c.530G>A	c.(529-531)AGC>AAC	p.S177N	DTX4_uc001nnr.2_Missense_Mutation_p.S71N	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	177					Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				TGGCCAGTCAGCCCTGGGCCA	0.657													7	35					0	0	1	0	0	
TMEM132A	54972	broad.mit.edu	37	11	60699530	60699530	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:60699530C>T	uc001nqj.2	+	7	1480	c.1287C>T	c.(1285-1287)GAC>GAT	p.D429D	TMEM132A_uc001nqi.2_Silent_p.D430D|TMEM132A_uc001nqk.2_Silent_p.D442D|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	429	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						TCACTGTGGACGGCGGGGGGG	0.652													30	45					0	0	1	0	0	
SYT7	9066	broad.mit.edu	37	11	61318905	61318905	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:61318905C>T	uc001nrv.2	-	3	172	c.166G>A	c.(166-168)GTG>ATG	p.V56M	SYT7_uc009ynr.2_Missense_Mutation_p.V56M|SYT7_uc001nrx.1_RNA	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	56	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						GGCGTGCCCACCGTCTCCAAG	0.587													20	70					0	0	1	0	0	
C11orf84	144097	broad.mit.edu	37	11	63585422	63585422	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:63585422C>T	uc001nxt.2	+	2	509	c.273C>T	c.(271-273)TGC>TGT	p.C91C		NM_138471	NP_612480	Q9BUA3	CK084_HUMAN	hypothetical protein LOC144097	91											0						GGGCACTGTGCATGGTGTGTG	0.652													12	33					0	0	1	0	0	
TRPT1	83707	broad.mit.edu	37	11	63992188	63992188	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:63992188A>G	uc001nyo.2	-	5	543	c.329T>C	c.(328-330)GTA>GCA	p.V110A	TRPT1_uc010rnc.1_Missense_Mutation_p.V110A|TRPT1_uc010rnd.1_Missense_Mutation_p.V112A|TRPT1_uc001nyn.2_Missense_Mutation_p.V61A|TRPT1_uc010rne.1_Missense_Mutation_p.V110A|TRPT1_uc010rnf.1_Missense_Mutation_p.V110A|NUDT22_uc009ypd.2_5'Flank|NUDT22_uc001nyp.3_5'Flank|NUDT22_uc009ype.2_5'Flank|NUDT22_uc001nyq.3_5'Flank|NUDT22_uc010rng.1_5'Flank	NM_001033678	NP_001028850	Q86TN4	TRPT1_HUMAN	tRNA phosphotransferase 1 isoform 1	110							tRNA 2'-phosphotransferase activity				0						CAACTTAGGTACCTGGTTGAA	0.612													11	46					0	0	1	0	0	
NRXN2	9379	broad.mit.edu	37	11	64390507	64390507	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:64390507G>A	uc001oap.2	-	6	1264	c.753C>T	c.(751-753)ATC>ATT	p.I251I	NRXN2_uc001oar.2_Silent_p.I1297I|NRXN2_uc001oas.2_Silent_p.I1227I|NRXN2_uc001oao.2_5'UTR|NRXN2_uc001oaq.2_Silent_p.I964I	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	251	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCCGGCCCCCGATCTTGATGG	0.498													5	11					0	0	1	0	0	
MAP4K2	5871	broad.mit.edu	37	11	64569590	64569590	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:64569590G>A	uc001obh.2	-	5	406	c.314C>T	c.(313-315)ACT>ATT	p.T105I	MAP4K2_uc001obi.2_Missense_Mutation_p.T105I|MAP4K2_uc010rnp.1_3'UTR	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	105	Protein kinase.				activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						CAGGGGCCCAGTGGCTGAAAG	0.627											OREG0004013	type=REGULATORY REGION|Gene=AF161342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	19					0	0	1	0	0	
NAALADL1	10004	broad.mit.edu	37	11	64815659	64815659	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:64815659G>A	uc001ocn.2	-	10	1329	c.1313C>T	c.(1312-1314)ACG>ATG	p.T438M	NAALADL1_uc010rnw.1_Translation_Start_Site|NAALADL1_uc009ypz.2_RNA	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	438	NAALADase.|Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						GTAGGCCACCGTGCGCTCCTG	0.627													23	133					0	0	1	0	0	
MALAT1	378938	broad.mit.edu	37	11	65271397	65271397	+	RNA	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:65271397T>C	uc010roh.1	+	1		c.6165T>C			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						ATGATCAGAGTAAAAGGTAAT	0.338													4	10					0	0	1	0	0	
LTBP3	4054	broad.mit.edu	37	11	65325120	65325120	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:65325120G>A	uc001oej.2	-	1	580	c.311C>T	c.(310-312)ACG>ATG	p.T104M	LTBP3_uc010roi.1_Translation_Start_Site|LTBP3_uc001oei.2_Missense_Mutation_p.T104M|LTBP3_uc010roj.1_Missense_Mutation_p.T90M|LTBP3_uc010rok.1_Missense_Mutation_p.T15M	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	104	Gly-rich.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						GCCGGAGCCCGTGAGCGTGTC	0.672													36	54					0	0	1	0	0	
RELA	5970	broad.mit.edu	37	11	65426295	65426295	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:65426295T>C	uc001ofg.2	-	7	700	c.560_splice	c.e7-1	p.R187_splice	RELA_uc001ofh.2_Splice_Site_p.R184_splice|RELA_uc010ron.1_Splice_Site_p.R198_splice|RELA_uc009yqr.2_Splice_Site_p.R134_splice|RELA_uc001ofe.2_Splice_Site_p.R187_splice|RELA_uc001off.2_Splice_Site_p.R187_splice|RELA_uc009yqs.1_Intron	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene						anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						TGGGGGCACCTGAGGCAGTGA	0.597													31	40					0	0	1	0	0	
PITPNM1	9600	broad.mit.edu	37	11	67261407	67261407	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:67261407C>T	uc001olx.2	-	19	3183	c.2994G>A	c.(2992-2994)GTG>GTA	p.V998V	PITPNM1_uc001olw.2_Silent_p.V280V|PITPNM1_uc001oly.2_Silent_p.V998V|PITPNM1_uc001olz.2_Silent_p.V997V	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	998					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CCACCATGCGCACGGGGTAGA	0.537													3	14					0	0	1	0	0	
ALDH3B1	221	broad.mit.edu	37	11	67786680	67786680	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:67786680G>A	uc010rpy.1	+	6	552	c.436G>A	c.(436-438)GTC>ATC	p.V146I	ALDH3B1_uc001omz.2_Missense_Mutation_p.V146I|ALDH3B1_uc001ona.2_Missense_Mutation_p.V109I|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	146					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	TAGCAAGAACGTCGAGAAGAT	0.607													7	17					0	0	1	0	0	
P2RY6	5031	broad.mit.edu	37	11	73007933	73007933	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:73007933C>T	uc001otm.2	+	4	775	c.370C>T	c.(370-372)CGC>TGC	p.R124C	P2RY6_uc001otn.2_Missense_Mutation_p.R124C|P2RY6_uc001oto.2_Missense_Mutation_p.R124C|P2RY6_uc001otp.2_Missense_Mutation_p.R124C|P2RY6_uc001otq.2_Missense_Mutation_p.R124C|P2RY6_uc001otr.2_Missense_Mutation_p.R124C|P2RY6_uc001ots.2_Missense_Mutation_p.R124C	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	124	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						CAGCTTCCAGCGCTACCTGGG	0.657													28	66					0	0	1	0	0	
CHRDL2	25884	broad.mit.edu	37	11	74424463	74424463	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:74424463G>A	uc001ovi.2	-	3	510	c.257C>T	c.(256-258)ACG>ATG	p.T86M	CHRDL2_uc001ovg.2_Intron|CHRDL2_uc001ovh.2_Missense_Mutation_p.T86M|CHRDL2_uc001ovk.1_Missense_Mutation_p.T86M			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	86	VWFC 1.				cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					CTGTGGCTCCGTCACAGGCTG	0.597													15	41					0	0	1	0	0	
ODZ4	26011	broad.mit.edu	37	11	78449536	78449536	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:78449536T>C	uc001ozl.3	-	20	3299	c.2836A>G	c.(2836-2838)AAC>GAC	p.N946D		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	946	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AAGAGAGGGTTATTGACAAAA	0.478													10	22					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92086841	92086841	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:92086841T>C	uc001pdj.3	+	1	1580	c.1563T>C	c.(1561-1563)ATT>ATC	p.I521I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	521	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CATTTGTCATTAATCAGTTTA	0.393										TCGA Ovarian(4;0.039)			30	81					0	0	1	0	0	
CCDC82	79780	broad.mit.edu	37	11	96117891	96117891	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:96117891A>G	uc009ywp.2	-	1	264	c.21T>C	c.(19-21)CAT>CAC	p.H7H	CCDC82_uc009ywq.2_Silent_p.H7H|CCDC82_uc001pfx.3_Silent_p.H7H|CCDC82_uc009ywr.2_Silent_p.H7H|CCDC82_uc009yws.2_Silent_p.H7H	NM_024725	NP_079001	Q8N4S0	CCD82_HUMAN	coiled-coil domain containing 82	7							protein binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.154)		TCCTTGTTTCATGTCTTCTAA	0.299													9	14					0	0	1	0	0	
CNTN5	53942	broad.mit.edu	37	11	99827598	99827598	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:99827598G>A	uc001pga.2	+	8	1073	c.734G>A	c.(733-735)CGG>CAG	p.R245Q	CNTN5_uc009ywv.1_Missense_Mutation_p.R245Q|CNTN5_uc001pfz.2_Missense_Mutation_p.R245Q|CNTN5_uc001pgb.2_Missense_Mutation_p.R171Q	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	245	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GACAGCCGGCGGTTCATCTCC	0.413													20	47					0	0	1	0	0	
MMP10	4319	broad.mit.edu	37	11	102650093	102650093	+	Splice_Site	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:102650093C>A	uc001phg.1	-	3	370	c.348_splice	c.e3-1	p.R116_splice		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein						collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		ATTCACAATCCTGGAGGAGAA	0.368													28	72					2.44723e-14	2.70714e-14	1	1	0	
ZC3H12C	85463	broad.mit.edu	37	11	110036198	110036198	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:110036198C>T	uc009yxw.2	+	6	2439	c.2388C>T	c.(2386-2388)CCC>CCT	p.P796P	ZC3H12C_uc010rwc.1_Silent_p.P797P|ZC3H12C_uc010rwd.1_Silent_p.P797P|ZC3H12C_uc001pkr.3_Silent_p.P765P	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	796							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		ATTCCTTGCCCGATAACTCCA	0.577													16	34					0	0	1	0	0	
NNMT	4837	broad.mit.edu	37	11	114182908	114182908	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:114182908C>T	uc001por.1	+	5	768	c.504C>T	c.(502-504)GCC>GCT	p.A168A	NNMT_uc001pos.1_Silent_p.A168A	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	168					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	GTCTGGATGCCGCCTGCCCAG	0.632													32	50					0	0	1	0	0	
SIDT2	51092	broad.mit.edu	37	11	117052201	117052201	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:117052201C>T	uc001pqh.1	+	2	294	c.253C>T	c.(253-255)CGC>TGC	p.R85C	SIDT2_uc010rxe.1_Missense_Mutation_p.R85C|SIDT2_uc001pqg.2_Missense_Mutation_p.R85C|SIDT2_uc001pqi.1_Missense_Mutation_p.R85C	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	85	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		GTTTGTGGTCCGCCAGAAGGA	0.602											OREG0021368	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	40					0	0	1	0	0	
TMPRSS4	56649	broad.mit.edu	37	11	117973950	117973950	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:117973950G>A	uc010rxo.1	+	4	583	c.292G>A	c.(292-294)GAA>AAA	p.E98K	TMPRSS4_uc010rxp.1_Missense_Mutation_p.E98K|TMPRSS4_uc010rxq.1_5'UTR|TMPRSS4_uc010rxr.1_Missense_Mutation_p.E73K|TMPRSS4_uc010rxs.1_Missense_Mutation_p.E58K|TMPRSS4_uc009yzu.2_RNA|TMPRSS4_uc010rxt.1_Missense_Mutation_p.E73K	NM_019894	NP_063947	Q9NRS4	TMPS4_HUMAN	transmembrane protease, serine 4 isoform 1	98	Extracellular (Potential).|SRCR.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0431)|all_hematologic(192;0.164)|Breast(348;0.183)|all_neural(223;0.238)		BRCA - Breast invasive adenocarcinoma(274;4.16e-05)|Epithelial(105;0.00204)		GAGCTTCCCCGAAGGGCCTGC	0.632													44	75					0	0	1	0	0	
RNF26	79102	broad.mit.edu	37	11	119207069	119207069	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:119207069G>A	uc001pwh.2	+	1	1833	c.1237G>A	c.(1237-1239)GTC>ATC	p.V413I		NM_032015	NP_114404	Q9BY78	RNF26_HUMAN	ring finger protein 26	413	RING-type.						zinc ion binding			ovary(1)	1		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.8e-05)		GCGCCACCCCGTCTACCACCG	0.632													42	68					0	0	1	0	0	
OR10G9	219870	broad.mit.edu	37	11	123894243	123894243	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:123894243A>G	uc010sad.1	+	1	524	c.524A>G	c.(523-525)CAC>CGC	p.H175R		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CAGATCCAGCACTATTTGTGT	0.557													37	159					0	0	1	0	0	
ROBO3	64221	broad.mit.edu	37	11	124738822	124738822	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:124738822T>C	uc001qbc.2	+	2	477	c.285T>C	c.(283-285)ATT>ATC	p.I95I		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	95	Ig-like C2-type 1.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		GACCCAACATTGAGTGGTACA	0.701													5	5					0	0	1	0	0	
NFRKB	4798	broad.mit.edu	37	11	129743720	129743720	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:129743720C>T	uc001qfi.2	-	22	2671	c.2470G>A	c.(2470-2472)GCA>ACA	p.A824T	NFRKB_uc001qfg.2_Missense_Mutation_p.A849T|NFRKB_uc001qfh.2_Missense_Mutation_p.A847T|NFRKB_uc010sbw.1_Missense_Mutation_p.A834T|NFRKB_uc009zcr.2_Missense_Mutation_p.A110T	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	824					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		AATGTCTGTGCCGGCCCTCCC	0.642													35	61					0	0	1	0	0	
APLP2	334	broad.mit.edu	37	11	129979402	129979402	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:129979402C>T	uc010sby.1	+	2	341	c.184C>T	c.(184-186)CAT>TAT	p.H62Y	APLP2_uc001qfp.2_Missense_Mutation_p.H62Y|APLP2_uc001qfq.2_Missense_Mutation_p.H62Y|APLP2_uc010sbz.1_Intron|APLP2_uc001qfr.2_Splice_Site|APLP2_uc001qfs.2_Missense_Mutation_p.H62Y|APLP2_uc001qfv.2_Missense_Mutation_p.H9Y	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	62	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		GTTAAATATGCATGTGAACAT	0.443													18	29					0	0	1	0	0	
ADAMTS15	170689	broad.mit.edu	37	11	130319163	130319163	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:130319163C>T	uc010scd.1	+	1	295	c.295C>T	c.(295-297)CGA>TGA	p.R99*		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	99					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		TTCAGACCTGCGACGCTGCTT	0.672													16	79					0	0	1	0	0	
NTM	50863	broad.mit.edu	37	11	132082036	132082036	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:132082036C>T	uc001qgp.2	+	3	1185	c.521C>T	c.(520-522)CCC>CTC	p.P174L	NTM_uc001qgm.2_Missense_Mutation_p.P174L|NTM_uc010sch.1_Missense_Mutation_p.P165L|NTM_uc010sci.1_Missense_Mutation_p.P174L|NTM_uc010scj.1_Missense_Mutation_p.P133L|NTM_uc001qgo.2_Missense_Mutation_p.P174L|NTM_uc001qgq.2_Missense_Mutation_p.P174L|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	174	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						CACATCTCTCCCAAAGGTAAG	0.443													14	67					0	0	1	0	0	
WNK1	65125	broad.mit.edu	37	12	993365	993365	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:993365G>T	uc001qio.3	+	18	4307	c.3800G>T	c.(3799-3801)CGA>CTA	p.R1267L	WNK1_uc001qip.3_Missense_Mutation_p.R1020L|WNK1_uc001qir.3_Missense_Mutation_p.R440L	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1267					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CCAGAAAGCCGATTACGAGAA	0.408													40	74					4.32679e-17	4.82692e-17	1	1	0	
TNFRSF1A	7132	broad.mit.edu	37	12	6438696	6438696	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:6438696C>T	uc001qnu.2	-	10	1431	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K	TNFRSF1A_uc001qnt.2_Missense_Mutation_p.E276K|TNFRSF1A_uc010sey.1_Missense_Mutation_p.E152K|TNFRSF1A_uc010sez.1_Missense_Mutation_p.E276K|TNFRSF1A_uc009zek.2_Missense_Mutation_p.E341K	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	384	Death.|Cytoplasmic (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						CGATCGATCTCGTGGTCGCTC	0.706													10	16					0	0	1	0	0	
LPAR5	57121	broad.mit.edu	37	12	6730002	6730002	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:6730002G>A	uc009zer.2	-	2	694	c.413C>T	c.(412-414)GCG>GTG	p.A138V	LPAR5_uc001qps.2_Missense_Mutation_p.A138V|LPAR5_uc010sff.1_Missense_Mutation_p.A138V	NM_001142961	NP_001136433	Q9H1C0	LPAR5_HUMAN	lysophosphatidic acid receptor 5	138	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2						GAGCAGCCGCGCCACGCGGGG	0.711													3	4					0	0	1	0	0	
USP5	8078	broad.mit.edu	37	12	6964600	6964600	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:6964600G>A	uc001qri.3	+	2	206	c.147G>A	c.(145-147)ACG>ACA	p.T49T	USP5_uc001qrh.3_Silent_p.T49T	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	49					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						GTATGAACACGTTTCTGGGCT	0.488													59	135					0	0	1	0	0	
KLRC3	3823	broad.mit.edu	37	12	10587931	10587931	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:10587931T>C	uc001qyh.2	-	2	273	c.266A>G	c.(265-267)AAA>AGA	p.K89R	KLRC2_uc010she.1_Missense_Mutation_p.K89R|KLRC2_uc001qyk.2_Missense_Mutation_p.K89R	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	89	Helical; Signal-anchor for type II membrane protein; (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						AACTATTGTTTTTAACACAGT	0.408													28	111					0	0	1	0	0	
LMO3	55885	broad.mit.edu	37	12	16753644	16753644	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:16753644C>A	uc001rdk.1	-	2	591	c.151G>T	c.(151-153)GGC>TGC	p.G51C	LMO3_uc001rdj.1_Missense_Mutation_p.G62C|LMO3_uc010shy.1_Missense_Mutation_p.G69C|LMO3_uc001rdl.1_Missense_Mutation_p.G51C|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Intron|LMO3_uc001rdm.1_Missense_Mutation_p.G51C|LMO3_uc001rdo.1_Intron|LMO3_uc001rdp.1_Intron|LMO3_uc001rdn.1_Missense_Mutation_p.G51C|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	51	LIM zinc-binding 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				AGGGTGGAGCCCACCTCTCCC	0.483													7	74					8.12818e-05	8.37498e-05	1	1	0	
KRAS	3845	broad.mit.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	T	T	rs112445441		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:25398281C>T	uc001rgp.1	-	2	219	c.38G>A	c.(37-39)GGC>GAC	p.G13D	KRAS_uc001rgq.1_Missense_Mutation_p.G13D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	13	GTP.		G -> R (in pylocytic astrocytoma; somatic mutation; increase activation of the Ras pathway).|G -> D (in a breast carcinoma cell line and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G13D(2647)|p.G13C(182)|p.G13S(58)|p.G13R(41)|p.G13V(27)|p.G13A(24)|p.G13G(11)|p.G13E(4)|p.G12_G13insG(4)|p.G13N(3)|p.G13I(1)|p.G13_V14>DI(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CTTGCCTACGCCACCAGCTCC	0.338	G13D(NCIH647_LUNG)|G13D(MDAMB231_BREAST)|G13D(NCIH747_LARGE_INTESTINE)|G13D(T84_LARGE_INTESTINE)|G13D(LOVO_LARGE_INTESTINE)|G13D(DLD1_LARGE_INTESTINE)|G13D(DV90_LUNG)|G13D(HCT15_LARGE_INTESTINE)|G13D(HCT116_LARGE_INTESTINE)|G13D(TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G13D(NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			3	14					0	0	1	0	0	
TMTC1	83857	broad.mit.edu	37	12	29709910	29709910	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:29709910G>A	uc001rjb.2	-	10	1706	c.1232C>T	c.(1231-1233)GCG>GTG	p.A411V	TMTC1_uc001riz.2_Missense_Mutation_p.A168V|TMTC1_uc001rja.2_Missense_Mutation_p.A255V|TMTC1_uc001rjc.1_Missense_Mutation_p.A473V	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	519	TPR 2.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					GTTGTTGAGCGCACTTGCATG	0.463													29	30					0	0	1	0	0	
MLL2	8085	broad.mit.edu	37	12	49420859	49420859	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:49420859G>A	uc001rta.3	-	48	14890	c.14890C>T	c.(14890-14892)CGT>TGT	p.R4964C		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4964	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCCGGGCACGGGGCTTGGGT	0.627			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			26	66					0	0	1	0	0	
AAAS	8086	broad.mit.edu	37	12	53701365	53701365	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:53701365G>T	uc001scr.3	-	16	1712	c.1549C>A	c.(1549-1551)CTC>ATC	p.L517I	AAAS_uc001scs.3_Missense_Mutation_p.L484I	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	517					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						TCAGTAAAGAGGGGCAGGTCA	0.582													31	50					1.32181e-22	1.49682e-22	1	1	0	
ZBTB39	9880	broad.mit.edu	37	12	57397071	57397071	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:57397071C>T	uc001sml.1	-	2	1717	c.1631G>A	c.(1630-1632)AGC>AAC	p.S544N	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	544	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GAAGCTCTGGCTGCACAAGCG	0.562													8	25					0	0	1	0	0	
R3HDM2	22864	broad.mit.edu	37	12	57677634	57677634	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:57677634C>T	uc009zpm.1	-	11	1137	c.1102G>A	c.(1102-1104)GGC>AGC	p.G368S	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.G29S|R3HDM2_uc001snr.2_Missense_Mutation_p.G95S|R3HDM2_uc001sns.2_Missense_Mutation_p.G368S|R3HDM2_uc001snt.2_Missense_Mutation_p.G382S	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	368	Ser-rich.					nucleus	nucleic acid binding			ovary(2)	2						CCCGCACTGCCGCCTTTACTG	0.522													9	181					0	0	1	0	0	
GLI1	2735	broad.mit.edu	37	12	57859007	57859007	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:57859007C>A	uc001snx.2	+	5	581	c.503C>A	c.(502-504)CCT>CAT	p.P168H	GLI1_uc009zpq.2_Missense_Mutation_p.P40H	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	168					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			ATCCCACATCCTCAGTCCCGG	0.592													12	25					3.07112e-06	3.20517e-06	1	1	0	
AVIL	10677	broad.mit.edu	37	12	58202264	58202264	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:58202264G>A	uc001sqj.1	-	9	1036	c.1007C>T	c.(1006-1008)TCG>TTG	p.S336L	AVIL_uc009zqe.1_Missense_Mutation_p.S329L|AVIL_uc001sqk.1_5'UTR|AVIL_uc001sql.3_Missense_Mutation_p.S313L	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	336	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GAACATGGCCGACTCAGCACC	0.547													24	39					0	0	1	0	0	
XPOT	11260	broad.mit.edu	37	12	64808688	64808688	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:64808688C>T	uc001ssb.2	+	3	488	c.62C>T	c.(61-63)GCC>GTC	p.A21V	XPOT_uc009zqm.1_5'UTR	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	21	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		ATCTTATAGGCCCTGGCCTAT	0.358													7	69					0	0	1	0	0	
PTPRR	5801	broad.mit.edu	37	12	71155319	71155319	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:71155319G>A	uc001swi.1	-	4	975	c.559C>T	c.(559-561)CGT>TGT	p.R187C	PTPRR_uc010stq.1_Missense_Mutation_p.R75C	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	187	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TTAAGTGAACGAAGAACTTCC	0.368													37	79					0	0	1	0	0	
NAV3	89795	broad.mit.edu	37	12	78571062	78571062	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:78571062G>T	uc001syp.2	+	27	5439	c.5266G>T	c.(5266-5268)GCA>TCA	p.A1756S	NAV3_uc001syo.2_Missense_Mutation_p.A1756S|NAV3_uc010sub.1_Missense_Mutation_p.A1235S|NAV3_uc009zsf.2_Missense_Mutation_p.A587S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1756						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTGTGGCTCAGCATCCATGAA	0.433										HNSCC(70;0.22)			39	72					2.75727e-19	3.09899e-19	1	1	0	
LUM	4060	broad.mit.edu	37	12	91502483	91502483	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:91502483G>T	uc001tbm.2	-	2	663	c.274C>A	c.(274-276)CTG>ATG	p.L92M	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	92	LRR 2.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						AGCCACTGCAGATCAGTTACA	0.378													23	35					1.10513e-12	1.20727e-12	1	1	0	
ANKS1B	56899	broad.mit.edu	37	12	99837512	99837512	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:99837512T>C	uc001tge.1	-	11	1931	c.1514A>G	c.(1513-1515)GAT>GGT	p.D505G	ANKS1B_uc001tgf.1_Missense_Mutation_p.D85G|ANKS1B_uc009ztt.1_Missense_Mutation_p.D471G	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	505						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AGGTGAACAATCAGGTGTTGG	0.433													20	59					0	0	1	0	0	
SPIC	121599	broad.mit.edu	37	12	101873423	101873423	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:101873423A>G	uc001tid.2	+	4	320	c.161A>G	c.(160-162)TAT>TGT	p.Y54C	SPIC_uc009zua.2_5'UTR|SPIC_uc010svp.1_Missense_Mutation_p.Y53C	NM_152323	NP_689536	Q8N5J4	SPIC_HUMAN	Spi-C transcription factor (Spi-1/PU.1 related)	54						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TCCAGCTGCTATGGAGTGTTG	0.373													9	39					0	0	1	0	0	
C12orf23	90488	broad.mit.edu	37	12	107365084	107365084	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:107365084C>G	uc001tmb.2	+	4	640	c.266C>G	c.(265-267)GCT>GGT	p.A89G	C12orf23_uc001tmc.2_Missense_Mutation_p.A89G|C12orf23_uc001tmd.2_Missense_Mutation_p.A89G	NM_152261	NP_689474	Q8WUH6	CL023_HUMAN	hypothetical protein LOC90488	89	Helical; (Potential).					integral to membrane					0						GGTGTCTCTGCTGTGGCTGGA	0.473													30	58					0	0	1	0	0	
FICD	11153	broad.mit.edu	37	12	108913176	108913176	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:108913176C>T	uc001tmx.1	+	3	1447	c.1301C>T	c.(1300-1302)ACT>ATT	p.T434I		NM_007076	NP_009007	Q9BVA6	FICD_HUMAN	Huntingtin interacting protein E	434					negative regulation of Rho GTPase activity	integral to membrane	binding|protein adenylyltransferase activity				0						TTTGCCACAACTGAGTACTCG	0.552													12	29					0	0	1	0	0	
KCTD10	83892	broad.mit.edu	37	12	109889532	109889532	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:109889532C>T	uc001toi.1	-	7	898	c.810G>A	c.(808-810)GCG>GCA	p.A270A	KCTD10_uc001toh.1_RNA|KCTD10_uc009zvi.1_Silent_p.A244A|KCTD10_uc001toj.1_Silent_p.A279A|KCTD10_uc001tok.1_Silent_p.A89A	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	potassium channel tetramerisation domain	270					proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						CCTCCAGGAGCGCATTGTCAG	0.647													15	27					0	0	1	0	0	
CUX2	23316	broad.mit.edu	37	12	111734323	111734323	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:111734323C>T	uc001tsa.1	+	8	837	c.684C>T	c.(682-684)TAC>TAT	p.Y228Y		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	228	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GGCGGAAGTACGACGAGGAGG	0.622													5	16					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112607396	112607396	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:112607396G>A	uc009zwc.2	-	63	10871	c.10853C>T	c.(10852-10854)TCG>TTG	p.S3618L		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GAGCTGAGACGACGGCACTGA	0.577													26	42					0	0	1	0	0	
MED13L	23389	broad.mit.edu	37	12	116429481	116429481	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:116429481T>C	uc001tvw.2	-	17	3333	c.3278A>G	c.(3277-3279)AAC>AGC	p.N1093S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1093					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CTCCACAGAGTTGAGGGGCCG	0.547													16	24					0	0	1	0	0	
RNFT2	84900	broad.mit.edu	37	12	117187926	117187926	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:117187926C>T	uc009zwn.2	+	4	597	c.364C>T	c.(364-366)CGC>TGC	p.R122C	RNFT2_uc001twb.3_Missense_Mutation_p.R122C|RNFT2_uc001twa.3_Missense_Mutation_p.R32C	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	122	Extracellular (Potential).|His-rich.					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		TGGCGGCCACCGCGGGGGCTC	0.756													5	7					0	0	1	0	0	
WDR66	144406	broad.mit.edu	37	12	122396297	122396297	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:122396297A>G	uc009zxk.2	+	12	1992	c.1850A>G	c.(1849-1851)TAT>TGT	p.Y617C		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	617	WD 6.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGCCACCCATATCAACCCCTC	0.458													54	103					0	0	1	0	0	
MLXIP	22877	broad.mit.edu	37	12	122623059	122623059	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:122623059G>A	uc001ubq.2	+	14	2345	c.2345G>A	c.(2344-2346)CGG>CAG	p.R782Q	MLXIP_uc001ubt.2_Missense_Mutation_p.R389Q	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	782	Leucine-zipper.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		GAGGCCCGGCGGCTGCGGGAG	0.627													14	20					0	0	1	0	0	
ZCCHC8	55596	broad.mit.edu	37	12	122958509	122958509	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:122958509G>A	uc001ucn.2	-	14	1790	c.1659C>T	c.(1657-1659)TCC>TCT	p.S553S	ZCCHC8_uc001ucl.2_Silent_p.S164S|ZCCHC8_uc001ucm.2_Silent_p.S315S|ZCCHC8_uc009zxp.2_Silent_p.S315S|ZCCHC8_uc009zxq.2_Silent_p.S315S	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	553						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		ATGAGGCAACGGAATTGCCAG	0.532													68	154					0	0	1	0	0	
KNTC1	9735	broad.mit.edu	37	12	123060345	123060345	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:123060345A>G	uc001ucv.2	+	29	2650	c.2487_splice	c.e29-2	p.K829_splice	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore						cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		ATTTGCTTTCAGAGTCAAGTT	0.308													3	15					0	0	1	0	0	
PITPNM2	57605	broad.mit.edu	37	12	123470761	123470761	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:123470761C>T	uc001uej.1	-	25	4002	c.3863G>A	c.(3862-3864)CGC>CAC	p.R1288H	PITPNM2_uc001uek.1_Missense_Mutation_p.R1282H	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	1288					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GTTCCGGGAGCGCAGAAAGTC	0.736													3	5					0	0	1	0	0	
DHX37	57647	broad.mit.edu	37	12	125449032	125449032	+	Silent	SNP	G	A	A	rs35913103	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:125449032G>A	uc001ugy.2	-	15	2052	c.1953C>T	c.(1951-1953)GGC>GGT	p.G651G		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	651	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		AGGAGGATACGCCAGTGACGC	0.622													30	56					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132445499	132445499	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:132445499G>A	uc001ujn.2	+	1	370	c.335G>A	c.(334-336)CGG>CAG	p.R112Q	EP400_uc001ujl.2_Missense_Mutation_p.R112Q|EP400_uc001ujm.2_Missense_Mutation_p.R112Q|EP400_uc001ujj.1_Missense_Mutation_p.R112Q|EP400_uc001ujk.2_Missense_Mutation_p.R112Q	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	112					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CAGCCTCGGCGGTTTGAGCAT	0.667													7	17					0	0	1	0	0	
GOLGA3	2802	broad.mit.edu	37	12	133349748	133349748	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:133349748G>A	uc001ukz.1	-	24	4999	c.4440C>T	c.(4438-4440)CGC>CGT	p.R1480R		NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	1480					intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GTGGGTCGCCGCGTGGGCCGG	0.701													3	2					0	0	1	0	0	
XPO4	64328	broad.mit.edu	37	13	21417957	21417957	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:21417957G>A	uc001unq.3	-	5	561	c.525C>T	c.(523-525)AAC>AAT	p.N175N	XPO4_uc010tcr.1_Silent_p.N101N	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	175					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		TCAATCCAATGTTGCTAGTTT	0.333													18	34					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23906391	23906391	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:23906391C>T	uc001uon.2	-	10	12213	c.11624G>A	c.(11623-11625)CGT>CAT	p.R3875H	SACS_uc001uoo.2_Missense_Mutation_p.R3728H|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3875					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CTTAACTGTACGCATTTCATT	0.383													43	114					0	0	1	0	0	
SHISA2	387914	broad.mit.edu	37	13	26620736	26620736	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:26620736C>T	uc001uqm.1	-	2	888	c.803G>A	c.(802-804)GGC>GAC	p.G268D		NM_001007538	NP_001007539	Q6UWI4	SHSA2_HUMAN	shisa homolog 2 precursor	268	Cytoplasmic (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2						AGGCTGCAGGCCGTCCATGAA	0.562													28	55					0	0	1	0	0	
RNF6	6049	broad.mit.edu	37	13	26788460	26788460	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:26788460A>G	uc001uqo.2	-	5	1850	c.1559T>C	c.(1558-1560)CTG>CCG	p.L520P	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.L520P|RNF6_uc001uqp.2_Missense_Mutation_p.L520P|RNF6_uc001uqq.2_Missense_Mutation_p.L520P|RNF6_uc010tdk.1_Missense_Mutation_p.L164P	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	520					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TAAGTTACTCAGTTCTGAGTG	0.473													39	79					0	0	1	0	0	
FLT3	2322	broad.mit.edu	37	13	28578289	28578289	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:28578289C>G	uc001urw.2	-	24	2964	c.2882G>C	c.(2881-2883)CGT>CCT	p.R961P	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.R920P	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	961	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TTCCGAAACACGGCCATCCAC	0.463			Mis|O		AML|ALL								8	38					0	0	1	0	0	
SPG20	23111	broad.mit.edu	37	13	36905729	36905729	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:36905729C>A	uc001uvn.2	-	4	1085	c.815G>T	c.(814-816)TGT>TTT	p.C272F	SPG20_uc010ten.1_Missense_Mutation_p.C272F|SPG20_uc001uvm.2_Missense_Mutation_p.C272F|SPG20_uc001uvo.2_Missense_Mutation_p.C272F|SPG20_uc001uvq.2_Missense_Mutation_p.C272F|SPG20_uc001uvp.2_Missense_Mutation_p.C272F	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	272					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		TAACCAGTCACAAACCTGAAA	0.318													14	33					9.05144e-12	9.85726e-12	1	1	0	
ENOX1	55068	broad.mit.edu	37	13	43788214	43788214	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:43788214C>T	uc001uza.3	-	17	2144	c.1844G>A	c.(1843-1845)CGC>CAC	p.R615H	ENOX1_uc001uzb.3_Missense_Mutation_p.R615H|ENOX1_uc001uzc.3_Missense_Mutation_p.R615H|ENOX1_uc001uyz.3_Missense_Mutation_p.R224H	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	615					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		TTTGAACATGCGTGGCAGCCT	0.428													30	74					0	0	1	0	0	
LOC220429	220429	broad.mit.edu	37	13	50465283	50465283	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:50465283T>C	uc001vdk.2	+	1	739	c.557T>C	c.(556-558)CTG>CCG	p.L186P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						CTAAAATCACTGCTAGCTGAA	0.343													28	69					0	0	1	0	0	
FAM124A	220108	broad.mit.edu	37	13	51825626	51825626	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:51825626G>A	uc001vfg.1	+	3	254	c.123G>A	c.(121-123)GCG>GCA	p.A41A	FAM124A_uc001vfe.2_Silent_p.A41A|FAM124A_uc001vff.1_Silent_p.A77A	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	41										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		TTGAAGAGGCGCAGGACCCTT	0.527													17	38					0	0	1	0	0	
TBC1D4	9882	broad.mit.edu	37	13	75863191	75863191	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:75863191A>G	uc001vjl.1	-	20	3889	c.3542T>C	c.(3541-3543)GTG>GCG	p.V1181A	TBC1D4_uc010tht.1_Missense_Mutation_p.V391A|TBC1D4_uc010thu.1_Missense_Mutation_p.V338A|TBC1D4_uc010aer.2_Missense_Mutation_p.V1173A|TBC1D4_uc010aes.2_Missense_Mutation_p.V1118A	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1181						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		ATCCTGTAGCACATGATATTC	0.418													32	58					0	0	1	0	0	
NALCN	259232	broad.mit.edu	37	13	102029266	102029266	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:102029266A>G	uc001vox.1	-	5	704	c.515_splice	c.e5+1	p.K172_splice	NALCN_uc001voy.2_Splice_Site|NALCN_uc001voz.2_Splice_Site_p.K172_splice|NALCN_uc001vpa.2_Splice_Site_p.K172_splice	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1							integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGCAGCGCTCACTTTAAAATA	0.388													16	42					0	0	1	0	0	
FAM155A	728215	broad.mit.edu	37	13	108518356	108518356	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:108518356G>A	uc001vql.2	-	1	1105	c.589C>T	c.(589-591)CGG>TGG	p.R197W		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	197						integral to membrane	binding			skin(1)	1						GCCGCCCCCCGACTCCAGTTC	0.637													62	84					0	0	1	0	0	
LAMP1	3916	broad.mit.edu	37	13	113960868	113960868	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:113960868G>A	uc001vtm.1	+	2	411	c.130G>A	c.(130-132)GCC>ACC	p.A44T	LAMP1_uc010tka.1_Missense_Mutation_p.A44T	NM_005561	NP_005552	P11279	LAMP1_HUMAN	lysosomal-associated membrane protein 1	44	Lumenal (Potential).|First lumenal domain.					endosome membrane|integral to plasma membrane|lysosomal membrane|membrane fraction				central_nervous_system(2)	2	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			GTGCATAATGGCCAACTTCTC	0.512													27	72					0	0	1	0	0	
OR4K17	390436	broad.mit.edu	37	14	20586464	20586464	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:20586464A>C	uc001vwo.1	+	1	899	c.899A>C	c.(898-900)AAG>ACG	p.K300T		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCTGTAGATAAGTTCCTTGCT	0.408													15	47					0	0	1	0	0	
METT11D1	64745	broad.mit.edu	37	14	21458721	21458721	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:21458721G>A	uc001vyn.2	+	3	525	c.328G>A	c.(328-330)GCT>ACT	p.A110T	METT11D1_uc010tlk.1_Missense_Mutation_p.A110T|METT11D1_uc001vym.2_Missense_Mutation_p.A110T|METT11D1_uc001vyo.2_Missense_Mutation_p.A110T|METT11D1_uc001vyp.2_5'UTR|METT11D1_uc001vyq.2_5'UTR	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	110					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GCAAAGACGGGCTAGGCATCT	0.453											OREG0022561	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	42					0	0	1	0	0	
CHD8	57680	broad.mit.edu	37	14	21897486	21897486	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:21897486C>T	uc001was.1	-	3	109	c.15G>A	c.(13-15)TCG>TCA	p.S5S	CHD8_uc001war.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	284					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TGATGCGTTTCGATTCACCCT	0.443													15	18					0	0	1	0	0	
ABHD4	63874	broad.mit.edu	37	14	23072850	23072850	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:23072850T>C	uc001wgm.2	+	4	575	c.506T>C	c.(505-507)GTG>GCG	p.V169A	ABHD4_uc010tmz.1_3'UTR|ABHD4_uc010tna.1_Missense_Mutation_p.V169A|ABHD4_uc010tnb.1_Intron	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	169					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		CTCATCCTGGTGGACCCATGG	0.522													32	74					0	0	1	0	0	
JUB	84962	broad.mit.edu	37	14	23451381	23451381	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:23451381C>A	uc001whz.2	-	1	471	c.95G>T	c.(94-96)GGG>GTG	p.G32V		NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	32	PreLIM.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		CTTGCCCGGCCCGGGGGTCCC	0.677													23	39					3.08376e-08	3.27028e-08	1	1	0	
DCAF11	80344	broad.mit.edu	37	14	24590651	24590651	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:24590651C>T	uc001wlv.2	+	13	1604	c.1324C>T	c.(1324-1326)CGC>TGC	p.R442C	DCAF11_uc001wlw.2_Missense_Mutation_p.R442C|DCAF11_uc001wlz.2_Missense_Mutation_p.R342C|DCAF11_uc001wly.2_Missense_Mutation_p.R398C|DCAF11_uc001wme.2_Missense_Mutation_p.R402C|DCAF11_uc010tny.1_Missense_Mutation_p.R309C|DCAF11_uc001wmd.2_Missense_Mutation_p.R442C|DCAF11_uc001wmc.2_Missense_Mutation_p.R342C|DCAF11_uc001wmb.3_Missense_Mutation_p.R416C|DCAF11_uc001wma.3_Missense_Mutation_p.R442C	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	442	WD 6.					CUL4 RING ubiquitin ligase complex	protein binding				0						CACCCTCATCCGCTGCCGGTT	0.592													27	51					0	0	1	0	0	
NOVA1	4857	broad.mit.edu	37	14	26917657	26917657	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:26917657A>G	uc001wpy.2	-	5	1350	c.1032T>C	c.(1030-1032)GCT>GCC	p.A344A	NOVA1_uc001wpz.2_Silent_p.A320A|NOVA1_uc001wqa.2_Silent_p.A222A	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	347	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		ctgcagccaaagcccctgttg	0.328													11	20					0	0	1	0	0	
RALGAPA1	253959	broad.mit.edu	37	14	36197626	36197626	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:36197626G>A	uc001wti.2	-	13	2069	c.1678C>T	c.(1678-1680)CGC>TGC	p.R560C	RALGAPA1_uc001wtj.2_Missense_Mutation_p.R560C|RALGAPA1_uc010tpv.1_Missense_Mutation_p.R560C|RALGAPA1_uc010tpw.1_Missense_Mutation_p.R560C|RALGAPA1_uc001wtk.1_Missense_Mutation_p.R411C	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	560					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTAAGAATGCGTTTACACATA	0.279													15	15					0	0	1	0	0	
NKX2-1	7080	broad.mit.edu	37	14	36987121	36987121	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:36987121G>T	uc001wtt.2	-	2	819	c.478C>A	c.(478-480)CCG>ACG	p.P160T	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Missense_Mutation_p.P190T|NKX2-1_uc001wtv.2_Missense_Mutation_p.P160T|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	160					epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		TTCCTGCGCGGCGCGCTTGGC	0.692			A		NSCLC								7	14					2.0095e-06	2.10347e-06	1	1	0	
NKX2-8	26257	broad.mit.edu	37	14	37051465	37051465	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:37051465G>A	uc001wtx.2	-	1	322	c.130C>T	c.(130-132)CTG>TTG	p.L44L		NM_014360	NP_055175	O15522	NKX28_HUMAN	NK2 homeobox 8	44					liver development|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(36;0.143)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.0113)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0171)		TCCGAATCCAGCCAGGCGGCG	0.692													4	15					0	0	1	0	0	
FOXA1	3169	broad.mit.edu	37	14	38061521	38061521	+	Silent	SNP	G	A	A	rs142975212		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:38061521G>A	uc001wuf.2	-	2	780	c.468C>T	c.(466-468)GGC>GGT	p.G156G	FOXA1_uc010tpz.1_Silent_p.G123G	NM_004496	NP_004487	P55317	FOXA1_HUMAN	forkhead box A1	156					chromatin remodeling|embryo development|epithelial cell maturation involved in prostate gland development|epithelial tube branching involved in lung morphogenesis|epithelial-mesenchymal signaling involved in prostate gland development|glucose homeostasis|lung epithelial cell differentiation|negative regulation of survival gene product expression|neuron fate specification|pattern specification process|positive regulation of estrogen receptor signaling pathway|positive regulation of mitotic cell cycle|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|prostate gland epithelium morphogenesis|prostate gland stromal morphogenesis|response to estradiol stimulus|secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding				0	Breast(36;0.0954)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;5.41e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.0454)|LUSC - Lung squamous cell carcinoma(13;0.0917)|all cancers(34;0.0925)|BRCA - Breast invasive adenocarcinoma(188;0.239)	GBM - Glioblastoma multiforme(112;0.0222)		TGGCGTcgccgccgccgcccg	0.557													22	30					0	0	1	0	0	
LRFN5	145581	broad.mit.edu	37	14	42355997	42355997	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:42355997C>T	uc001wvm.2	+	3	1367	c.169C>T	c.(169-171)CGG>TGG	p.R57W	LRFN5_uc010ana.2_Missense_Mutation_p.R57W	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	57	Extracellular (Potential).|LRR 1.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TGTGGAACTGCGGTTGGCAGA	0.383										HNSCC(30;0.082)			16	27					0	0	1	0	0	
LRFN5	145581	broad.mit.edu	37	14	42360596	42360596	+	Missense_Mutation	SNP	C	T	T	rs150445484		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:42360596C>T	uc001wvm.2	+	4	2727	c.1529C>T	c.(1528-1530)ACG>ATG	p.T510M	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	510	Extracellular (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		CAGTTTACTACGGAACAGGAT	0.448										HNSCC(30;0.082)			53	114					0	0	1	0	0	
JKAMP	51528	broad.mit.edu	37	14	59961785	59961785	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:59961785G>A	uc001xei.3	+	4	845	c.343G>A	c.(343-345)GCA>ACA	p.A115T	JKAMP_uc001xef.3_Missense_Mutation_p.A101T|JKAMP_uc001xeh.3_Missense_Mutation_p.A95T|JKAMP_uc001xeg.3_Missense_Mutation_p.A109T|JKAMP_uc010try.1_Missense_Mutation_p.A38T|JKAMP_uc001xej.3_Missense_Mutation_p.A38T	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	116	Helical; (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						ATGCAGCATGGCAGCTATTAT	0.378													5	25					0	0	1	0	0	
EIF2S1	1965	broad.mit.edu	37	14	67843159	67843159	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:67843159T>C	uc001xjg.2	+	4	466	c.325T>C	c.(325-327)TAT>CAT	p.Y109H		NM_004094	NP_004085	P05198	IF2A_HUMAN	eukaryotic translation initiation factor 2,	109						cytosol|eukaryotic translation initiation factor 2 complex|polysome|stress granule	protein binding|ribosome binding|translation initiation factor activity			ovary(1)	1				all cancers(60;0.000683)|OV - Ovarian serous cystadenocarcinoma(108;0.00579)|BRCA - Breast invasive adenocarcinoma(234;0.00937)		TTTCTAGGTTTATAGCATTCT	0.328													11	19					0	0	1	0	0	
SLC8A3	6547	broad.mit.edu	37	14	70512799	70512799	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:70512799C>T	uc001xly.2	-	8	3403	c.2649G>A	c.(2647-2649)AGG>AGA	p.R883R	SLC8A3_uc001xlu.2_Silent_p.R240R|SLC8A3_uc001xlv.2_Silent_p.R254R|SLC8A3_uc001xlw.2_Silent_p.R880R|SLC8A3_uc001xlx.2_Silent_p.R881R|SLC8A3_uc001xlz.2_Silent_p.R877R|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_3'UTR	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	883	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGTGCGGCCGCCTTCGGTACA	0.602											OREG0022773	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	27					0	0	1	0	0	
C14orf115	55237	broad.mit.edu	37	14	74825385	74825385	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:74825385G>A	uc001xpw.3	+	2	2090	c.1899G>A	c.(1897-1899)GCG>GCA	p.A633A		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	633					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		TGGCAGCAGCGGGTGGCAGGG	0.652													10	22					0	0	1	0	0	
KIAA0317	9870	broad.mit.edu	37	14	75142501	75142501	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:75142501G>T	uc001xqb.2	-	8	1486	c.981C>A	c.(979-981)TCC>TCA	p.S327S	KIAA0317_uc010tut.1_Silent_p.S166S|KIAA0317_uc001xqc.2_Silent_p.S327S	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	327					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		CAACAGCAGTGGATGGCCGGC	0.522													94	165					4.21487e-37	4.81961e-37	1	1	0	
ALKBH1	8846	broad.mit.edu	37	14	78140528	78140528	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:78140528G>A	uc001xuc.1	-	6	806	c.797C>T	c.(796-798)ACG>ATG	p.T266M	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	266	Fe2OG dioxygenase.			TA -> PP (in Ref. 1; CAA63047).	DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		AAACATGGCCGTGGGGGCCTC	0.463													15	23					0	0	1	0	0	
FLRT2	23768	broad.mit.edu	37	14	86089608	86089608	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:86089608C>T	uc001xvr.2	+	2	2517	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W	FLRT2_uc010atd.2_Missense_Mutation_p.R584W	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	584	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CCGGGGCCGGCGGAAAGATGA	0.493													48	97					0	0	1	0	0	
EML5	161436	broad.mit.edu	37	14	89153595	89153595	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:89153595G>A	uc001xxg.2	-	20	3005	c.2819C>T	c.(2818-2820)GCT>GTT	p.A940V	EML5_uc001xxh.1_Missense_Mutation_p.A79V	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	940	WD 15.					cytoplasm|microtubule				ovary(3)	3						TCTTTTTATAGCATAGGTCTT	0.373													5	7					0	0	1	0	0	
SMEK1	55671	broad.mit.edu	37	14	91942831	91942831	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:91942831G>A	uc001xzn.2	-	6	1853	c.1031C>T	c.(1030-1032)ACG>ATG	p.T344M	SMEK1_uc001xzm.2_Missense_Mutation_p.T344M|SMEK1_uc001xzo.2_Missense_Mutation_p.T344M|SMEK1_uc010atz.2_Missense_Mutation_p.T105M|SMEK1_uc001xzp.1_RNA|SMEK1_uc001xzq.1_Missense_Mutation_p.T220M	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	344						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		AGGCTGTAGCGTTTGGGAAAA	0.289													19	28					0	0	1	0	0	
C14orf48	256369	broad.mit.edu	37	14	94467624	94467624	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:94467624C>A	uc001ycg.1	+	4	730	c.124C>A	c.(124-126)CCG>ACG	p.P42T	C14orf48_uc001ycf.2_RNA|C14orf48_uc010twp.1_RNA	NR_024184				Homo sapiens cDNA FLJ40422 fis, clone TESTI2038858.												0				Epithelial(152;0.114)|all cancers(159;0.191)|COAD - Colon adenocarcinoma(157;0.208)		AGGCTGTCCACCGGAGCCTGG	0.627													12	27					0.00010058	0.000103532	1	1	0	
HSP90AA1	3320	broad.mit.edu	37	14	102551762	102551762	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:102551762G>T	uc001yku.3	-	4	726	c.536C>A	c.(535-537)CCT>CAT	p.P179H	HSP90AA1_uc001ykv.3_Missense_Mutation_p.P301H|HSP90AA1_uc001ykw.1_5'UTR|HSP90AA1_uc001ykx.1_Missense_Mutation_p.P168H	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	179					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	ACGACCCATAGGTTCACCTGC	0.388													8	27					5.18039e-06	5.39048e-06	1	1	0	
AKT1	207	broad.mit.edu	37	14	105239379	105239379	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:105239379G>A	uc001ypk.2	-	11	1562	c.1008C>T	c.(1006-1008)GGC>GGT	p.G336G	INF2_uc010tyi.1_Intron|AKT1_uc001ypl.2_Silent_p.G336G|AKT1_uc010axa.2_Silent_p.G336G|AKT1_uc001ypm.2_Silent_p.G336G|AKT1_uc001ypn.2_Silent_p.G336G|AKT1_uc001ypj.2_5'Flank|AKT1_uc010tyk.1_Silent_p.G274G	NM_005163	NP_005154	P31749	AKT1_HUMAN	AKT1 kinase	336	Protein kinase.				activation of pro-apoptotic gene products|activation-induced cell death of T cells|endocrine pancreas development|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen biosynthetic process|induction of apoptosis by intracellular signals|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|mRNA metabolic process|negative regulation of fatty acid beta-oxidation|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|nitric oxide biosynthetic process|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of blood vessel endothelial cell migration|positive regulation of cell growth|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of establishment of protein localization in plasma membrane|positive regulation of fat cell differentiation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein autophosphorylation|protein import into nucleus, translocation|regulation of neuron projection development|regulation of translation|response to fluid shear stress|response to heat|response to UV-A|T cell costimulation	cytosol|nucleoplasm|plasma membrane	enzyme binding|identical protein binding|nitric-oxide synthase regulator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein serine/threonine kinase activity			breast(86)|urinary_tract(12)|thyroid(10)|lung(7)|endometrium(5)|large_intestine(4)|skin(4)|prostate(3)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|NS(1)	134		all_cancers(154;3.77e-06)|all_lung(585;3.24e-07)|all_epithelial(191;3.45e-05)|all_neural(303;0.0459)|Melanoma(154;0.155)	all cancers(16;0.000486)|OV - Ovarian serous cystadenocarcinoma(23;0.00647)|Epithelial(46;0.0153)|GBM - Glioblastoma multiforme(11;0.116)	all cancers(159;0.0107)|OV - Ovarian serous cystadenocarcinoma(161;0.0132)|Epithelial(152;0.243)	Adenosine triphosphate(DB00171)|Arsenic trioxide(DB01169)	ACATGACCACGCCCAGCCCCC	0.612		1	Mis		breast|colorectal|ovarian|NSCLC								34	46					0	0	1	0	0	
KIAA0284	283638	broad.mit.edu	37	14	105344265	105344265	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:105344265C>T	uc010axb.2	+	4	463	c.239C>T	c.(238-240)ACG>ATG	p.T80M	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.T10M|KIAA0284_uc001yps.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	80						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		AAGTACGTCACGCTGAAGCTC	0.627													3	4					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	20495387	20495387	+	RNA	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:20495387T>C	uc001ytf.1	+	5		c.590T>C								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GAAGAGAAAGTTTCAAGATCT	0.418													10	141					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	20651283	20651283	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:20651283G>A	uc001ytg.2	-	17	2374	c.1665C>T	c.(1663-1665)AGC>AGT	p.S555S	uc010tyx.1_RNA|uc001yth.3_Silent_p.S555S|uc010tyy.1_Silent_p.S555S					RecName: Full=Putative HERC2-like protein 3;																		CTTCCTCAACGCTGTCACAAC	0.473													19	119					0	0	1	0	0	
LOC646214	646214	broad.mit.edu	37	15	21936567	21936567	+	RNA	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:21936567T>C	uc010tzj.1	-	1		c.4173A>G				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATGTTAACGGTTACTCTTCAT	0.358													21	323					0	0	1	0	0	
LOC646214	646214	broad.mit.edu	37	15	21936938	21936938	+	RNA	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:21936938T>C	uc010tzj.1	-	1		c.3802A>G				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CGGTACTGCGTTTGCTCTGCT	0.493													18	361					0	0	1	0	0	
OR4M2	390538	broad.mit.edu	37	15	22368585	22368585	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:22368585G>A	uc010tzu.1	+	1	10	c.10G>A	c.(10-12)GCA>ACA	p.A4T	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AATGGAAACTGCAAATTACAC	0.328													35	235					0	0	1	0	0	
OR4N4	283694	broad.mit.edu	37	15	22382692	22382692	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:22382692T>G	uc001yuc.1	+	7	1201	c.220T>G	c.(220-222)TCC>GCC	p.S74A	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.S74A	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TGCATCCTACTCCTTCATTGT	0.473													56	384					0	0	1	0	0	
OR4N3P	390539	broad.mit.edu	37	15	22413749	22413749	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:22413749C>A	uc001yuf.2	+	1	48	c.48C>A	c.(46-48)GGC>GGA	p.G16G		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CCTACAGAGGCTGCATCACTC	0.517													39	307					7.88023e-25	8.96217e-25	1	1	0	
GOLGA8E	390535	broad.mit.edu	37	15	23443516	23443516	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:23443516C>A	uc001yvu.2	+	13	1591	c.602C>A	c.(601-603)GCC>GAC	p.A201D		NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E											skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;5.21e-07)|Epithelial(43;5.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.000614)		CTGGAAGCTGCCAGCCAGCAG	0.632													6	4					0.0581538	0.0583757	1	1	0	
Unknown	0	broad.mit.edu	37	15	29078500	29078500	+	RNA	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:29078500C>T	uc001zcj.2	+	2		c.160C>T								Homo sapiens, Similar to hect domain and RLD 2, clone IMAGE:4581928, mRNA.																		GCCTTGACACCGAATGGTTGA	0.448													13	25					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	33873717	33873717	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:33873717G>A	uc001zhi.2	+	14	1516	c.1446G>A	c.(1444-1446)TTG>TTA	p.L482L	RYR3_uc010bar.2_Silent_p.L482L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	482	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGGGAATGTTGGCCCTTGTCT	0.438													19	58					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	33893731	33893731	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:33893731C>T	uc001zhi.2	+	17	1970	c.1900C>T	c.(1900-1902)CGA>TGA	p.R634*	RYR3_uc010bar.2_Nonsense_Mutation_p.R634*	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	634	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCTGCAGACACGACTGATTAA	0.527													12	16					0	0	1	0	0	
C15orf55	256646	broad.mit.edu	37	15	34649312	34649312	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:34649312A>T	uc001zif.2	+	7	3174	c.3019A>T	c.(3019-3021)AAA>TAA	p.K1007*	C15orf55_uc010ucc.1_Nonsense_Mutation_p.K1035*|C15orf55_uc010ucd.1_Nonsense_Mutation_p.K1025*	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1007						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GGAGAAAAAGAAAAAGGAAGC	0.478			T	BRD3|BRD4	lethal midline carcinoma								13	38					0	0	1	0	0	
C15orf55	256646	broad.mit.edu	37	15	34649327	34649327	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:34649327G>C	uc001zif.2	+	7	3189	c.3034G>C	c.(3034-3036)GAA>CAA	p.E1012Q	C15orf55_uc010ucc.1_Missense_Mutation_p.E1040Q|C15orf55_uc010ucd.1_Missense_Mutation_p.E1030Q	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	1012						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GGAAGCAGAGGAAGAGGATGA	0.488			T	BRD3|BRD4	lethal midline carcinoma								18	42					0	0	1	0	0	
C15orf23	90417	broad.mit.edu	37	15	40678643	40678643	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:40678643G>A	uc001zll.2	+	3	500	c.385G>A	c.(385-387)GGA>AGA	p.G129R	C15orf23_uc010ucp.1_Missense_Mutation_p.G129R|C15orf23_uc001zlo.2_Missense_Mutation_p.G129R|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	129						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GCTTCATTCAGGAGGTCCAGA	0.423													14	33					0	0	1	0	0	
NUSAP1	51203	broad.mit.edu	37	15	41667943	41667943	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:41667943C>T	uc001zns.3	+	9	1270	c.1040C>T	c.(1039-1041)ACG>ATG	p.T347M	NUSAP1_uc001znq.3_Intron|NUSAP1_uc001znr.3_Missense_Mutation_p.T346M|NUSAP1_uc010bce.2_Intron|NUSAP1_uc001znt.3_Missense_Mutation_p.T332M|NUSAP1_uc001znv.3_Missense_Mutation_p.T345M|NUSAP1_uc001znu.3_Missense_Mutation_p.T346M|NUSAP1_uc010ucw.1_Intron|NUSAP1_uc001znw.3_Missense_Mutation_p.T151M	NM_016359	NP_057443	Q9BXS6	NUSAP_HUMAN	nucleolar and spindle associated protein 1	347	Interaction with microtubules (By similarity).				cytokinesis after mitosis|establishment of mitotic spindle localization|mitotic chromosome condensation|positive regulation of mitosis	chromosome|cytoplasm|nucleolus	DNA binding				0		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;9.63e-17)|GBM - Glioblastoma multiforme(113;1.59e-06)|BRCA - Breast invasive adenocarcinoma(123;0.168)		ACTGAGGCAACGCAGACTCCA	0.393													18	34					0	0	1	0	0	
PLA2G4D	283748	broad.mit.edu	37	15	42377688	42377688	+	Splice_Site	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:42377688C>T	uc001zox.2	-	5	523	c.428_splice	c.e5+1	p.T143_splice		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD						phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		ACATTACTCACGTTTCTTCCA	0.502													29	52					0	0	1	0	0	
SLC24A5	283652	broad.mit.edu	37	15	48413289	48413289	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:48413289C>T	uc001zwe.2	+	1	121	c.48C>T	c.(46-48)CTC>CTT	p.L16L	SLC24A5_uc001zwd.2_Silent_p.L16L|SLC24A5_uc010bel.2_Silent_p.L16L	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	16					response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		CTCTGTTGCTCGGCATCCTGT	0.587													8	21					0	0	1	0	0	
TMOD2	29767	broad.mit.edu	37	15	52075001	52075001	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:52075001T>C	uc002abk.2	+	7	929	c.708T>C	c.(706-708)ACT>ACC	p.T236T	TMOD2_uc002abl.3_Intron|TMOD2_uc010bfb.2_Silent_p.T192T	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	236					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		TGGCCGCAACTCGCAGCAATG	0.413													50	86					0	0	1	0	0	
UNC13C	440279	broad.mit.edu	37	15	54825154	54825154	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:54825154T>C	uc002ack.2	+	24	5586	c.5586T>C	c.(5584-5586)AGT>AGC	p.S1862S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1862					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AACAGATGAGTTTCGAACTAA	0.308													5	12					0	0	1	0	0	
RFX7	64864	broad.mit.edu	37	15	56436614	56436614	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:56436614C>T	uc010bfn.2	-	3	263	c.263G>A	c.(262-264)AGC>AAC	p.S88N		NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						CTCTCCATTGCTGAGACCAGA	0.358													21	42					0	0	1	0	0	
PARP16	54956	broad.mit.edu	37	15	65555515	65555515	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:65555515C>T	uc002aoo.2	-	4	917	c.663G>A	c.(661-663)CCG>CCA	p.P221P	PARP16_uc002aop.2_Silent_p.P106P|PARP16_uc002aoq.2_Silent_p.P221P	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	221	PARP catalytic.					integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						ACTTGACGTCCGGATGGTCAA	0.607													13	18					0	0	1	0	0	
STOML1	9399	broad.mit.edu	37	15	74277088	74277088	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:74277088G>T	uc002awe.2	-	6	986	c.915C>A	c.(913-915)GCC>GCA	p.A305A	STOML1_uc002awf.2_Silent_p.A304A|STOML1_uc010bje.2_Intron|STOML1_uc010uld.1_Silent_p.A262A|STOML1_uc002awh.2_Silent_p.A255A|STOML1_uc002awg.2_Silent_p.A254A|STOML1_uc002awi.2_Silent_p.A217A	NM_004809	NP_004800	Q9UBI4	STML1_HUMAN	stomatin (EPB72)-like 1	305	Cytoplasmic (Potential).|SCP2.					integral to membrane	sterol binding			skin(1)	1						GGCTGACCAGGGCCTCAGACA	0.632													27	41					8.24728e-16	9.1714e-16	1	1	0	
CYP1A1	1543	broad.mit.edu	37	15	75013634	75013634	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:75013634G>A	uc002ayp.3	-	5	1194	c.1072C>T	c.(1072-1074)CGG>TGG	p.R358W	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Missense_Mutation_p.R94W|CYP1A1_uc010bjx.2_Missense_Mutation_p.R94W|CYP1A1_uc002ayq.3_Missense_Mutation_p.R358W|CYP1A1_uc010bjy.2_Missense_Mutation_p.R358W|CYP1A1_uc010bjz.1_Missense_Mutation_p.R94W	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	358					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	TCAGAGAGCCGGGGCCGCCGT	0.602									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				25	53					0	0	1	0	0	
CIB2	10518	broad.mit.edu	37	15	78401674	78401674	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:78401674C>A	uc002bdb.1	-	4	570	c.249G>T	c.(247-249)GAG>GAT	p.E83D	CIB2_uc002bdc.1_Missense_Mutation_p.E40D|CIB2_uc010ums.1_Missense_Mutation_p.E83D	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	83	EF-hand 1.						calcium ion binding				0						TGAGGTTCCCCTCACCATCCT	0.512													24	44					2.21704e-12	2.41942e-12	1	1	0	
CHRNB4	1143	broad.mit.edu	37	15	78927807	78927807	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:78927807G>A	uc002bed.1	-	2	290	c.178C>T	c.(178-180)CTC>TTC	p.L60F	CHRNB4_uc002bee.1_Missense_Mutation_p.L60F|CHRNB4_uc010blh.1_5'UTR	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	60	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GCCAGGGAGAGCTGCAGCTTG	0.507													38	73					0	0	1	0	0	
ADAMTS7	11173	broad.mit.edu	37	15	79092719	79092719	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:79092719G>A	uc002bej.3	-	2	482	c.271C>T	c.(271-273)CTG>TTG	p.L91L	ADAMTS7_uc010und.1_Silent_p.L91L|ADAMTS7_uc002bek.1_Silent_p.L91L	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	91					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TTGAAGCGCAGCTCGCGCCCG	0.567													5	21					0	0	1	0	0	
MEX3B	84206	broad.mit.edu	37	15	82336037	82336037	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:82336037C>T	uc002bgq.1	-	2	1489	c.1174G>A	c.(1174-1176)GTA>ATA	p.V392I		NM_032246	NP_115622	Q6ZN04	MEX3B_HUMAN	mex-3 homolog B	392					protein autophosphorylation	cytoplasmic mRNA processing body|nucleus	calcium ion binding|RNA binding|zinc ion binding			breast(1)|kidney(1)	2						gaagaagaTACCGGAGCTGCA	0.547													12	14					0	0	1	0	0	
SH3GL3	6457	broad.mit.edu	37	15	84245409	84245409	+	Silent	SNP	C	T	T	rs138675150	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:84245409C>T	uc002bjw.2	+	6	735	c.540C>T	c.(538-540)GAC>GAT	p.D180D	SH3GL3_uc010uot.1_Silent_p.D180D|SH3GL3_uc002bjx.2_Silent_p.D111D|SH3GL3_uc002bju.2_Silent_p.D188D|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	180	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						AGATACCAGACGAAGAAGTCA	0.383													16	27					0	0	1	0	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84373227	84373227	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:84373227G>A	uc002bjz.3	+	3	380	c.156G>A	c.(154-156)GGG>GGA	p.G52G	ADAMTSL3_uc002bjy.1_Silent_p.G52G|ADAMTSL3_uc010bmt.1_Silent_p.G52G|ADAMTSL3_uc010bmu.1_Silent_p.G52G	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	52						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACACAACAGGGGAGCAGTTCC	0.463													55	109					0	0	1	0	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84657541	84657541	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:84657541A>G	uc002bjz.3	+	22	4039	c.3815A>G	c.(3814-3816)GAT>GGT	p.D1272G	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.D1272G|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.D1272G	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1272	Ig-like C2-type 2.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTTGGTTCAGATGTGGAAAGT	0.323													12	49					0	0	1	0	0	
ALPK3	57538	broad.mit.edu	37	15	85400994	85400994	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:85400994C>T	uc002ble.2	+	6	3798	c.3631C>T	c.(3631-3633)CGG>TGG	p.R1211W		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1211					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCTTAGTCCCCGGACATCGAG	0.662													18	42					0	0	1	0	0	
MRPS11	64963	broad.mit.edu	37	15	89020237	89020237	+	Silent	SNP	C	T	T	rs149594277	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:89020237C>T	uc002bml.2	+	5	694	c.429C>T	c.(427-429)GGC>GGT	p.G143G	MRPS11_uc002bmm.2_Silent_p.G110G|MRPS11_uc002bmn.2_Silent_p.G142G|MRPS11_uc010bnj.2_RNA	NM_022839	NP_073750	P82912	RT11_HUMAN	mitochondrial ribosomal protein S11 isoform a	143					DNA damage response, detection of DNA damage|translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0	Lung NSC(78;0.203)		BRCA - Breast invasive adenocarcinoma(143;0.188)			AACAAAAGGGCGTGATCCACA	0.507											OREG0023439	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	14					0	0	1	0	0	
CRTC3	64784	broad.mit.edu	37	15	91172715	91172715	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:91172715G>A	uc002bpp.2	+	11	1323	c.1217G>A	c.(1216-1218)AGC>AAC	p.S406N	CRTC3_uc002bpo.2_Missense_Mutation_p.S406N	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	406					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CAAGGTTTCAGCAGACAGCTG	0.562			T	MAML2	salivary gland mucoepidermoid								55	100					0	0	1	0	0	
MCTP2	55784	broad.mit.edu	37	15	94858782	94858782	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:94858782T>C	uc002btj.2	+	3	618	c.553T>C	c.(553-555)TTG>CTG	p.L185L	MCTP2_uc010urg.1_Silent_p.L185L|MCTP2_uc002bti.2_Silent_p.L185L|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Silent_p.L185L|MCTP2_uc002btg.3_Silent_p.L185L|MCTP2_uc002bth.3_Silent_p.L185L	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	185	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CAGTGATGGCTTGAGTAACCT	0.527													8	24					0	0	1	0	0	
IGF1R	3480	broad.mit.edu	37	15	99442794	99442794	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:99442794C>T	uc002bul.2	+	5	1241	c.1191C>T	c.(1189-1191)GTC>GTT	p.V397V	IGF1R_uc010urq.1_Silent_p.V397V|IGF1R_uc010bon.2_Silent_p.V397V	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	397					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	ATGCCTTGGTCTCCTTGTCCT	0.473													29	58					0	0	1	0	0	
LRRC28	123355	broad.mit.edu	37	15	99926275	99926275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:99926275C>T	uc002bva.1	+	10	1227	c.1072C>T	c.(1072-1074)CAG>TAG	p.Q358*	LRRC28_uc002bvb.1_Nonsense_Mutation_p.Q204*|LRRC28_uc010urt.1_Nonsense_Mutation_p.Q172*|LRRC28_uc002bvc.1_Silent_p.P304P|LRRC28_uc010uru.1_Nonsense_Mutation_p.Q289*|LRRC28_uc002bvd.1_Nonsense_Mutation_p.Q84*	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	358											0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			CTGCTCCACCCAGTGTCTGCA	0.493													94	245					0	0	1	0	0	
ADAMTS17	170691	broad.mit.edu	37	15	100692871	100692871	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:100692871G>A	uc002bvv.1	-	10	1498	c.1419C>T	c.(1417-1419)AAC>AAT	p.N473N	ADAMTS17_uc002bvx.1_Silent_p.N230N	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	473	Disintegrin.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GGCACTGCTCGTTGGCACTGT	0.587													8	89					0	0	1	0	0	
WDR90	197335	broad.mit.edu	37	16	700674	700674	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:700674G>T	uc002cii.1	+	5	578	c.524G>T	c.(523-525)AGG>ATG	p.R175M	WDR90_uc002cig.1_Missense_Mutation_p.R175M|WDR90_uc002cih.1_Missense_Mutation_p.R175M|WDR90_uc002cij.1_RNA	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	175										ovary(1)	1		Hepatocellular(780;0.0218)				CTGCTGGTCAGGAACCTGTAC	0.612													22	29					5.26018e-13	5.75828e-13	1	1	0	
BAIAP3	8938	broad.mit.edu	37	16	1392008	1392008	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:1392008C>A	uc002clk.1	+	10	903	c.903C>A	c.(901-903)TCC>TCA	p.S301S	BAIAP3_uc002clj.2_Silent_p.S283S|BAIAP3_uc010uuz.1_Silent_p.S266S|BAIAP3_uc010uva.1_Silent_p.S238S|BAIAP3_uc010uvb.1_Silent_p.S318S|BAIAP3_uc010uvc.1_Silent_p.S266S	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	301	C2 1.				G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				ACGATGTATCCCTGGTAGAAG	0.622													17	33					4.7546e-09	5.07801e-09	1	1	0	
CCNF	899	broad.mit.edu	37	16	2506911	2506911	+	Missense_Mutation	SNP	C	T	T	rs142532028	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:2506911C>T	uc002cqd.1	+	17	2339	c.2251C>T	c.(2251-2253)CGT>TGT	p.R751C	CCNF_uc002cqe.1_Missense_Mutation_p.R443C	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	751	PEST.				cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				TTTACAGTGTCGTCCCCCAAG	0.587													26	47					0	0	1	0	0	
ADCY9	115	broad.mit.edu	37	16	4164837	4164837	+	Missense_Mutation	SNP	C	T	T	rs143296765	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:4164837C>T	uc002cvx.2	-	2	1146	c.607G>A	c.(607-609)GAC>AAC	p.D203N		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	203	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TTGGAGCTGTCGCCGCGTCCT	0.597													33	51					0	0	1	0	0	
GLIS2	84662	broad.mit.edu	37	16	4386992	4386992	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:4386992G>A	uc002cwc.1	+	6	1099	c.1042G>A	c.(1042-1044)GTC>ATC	p.V348I		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	348					cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						CGGCCCCTATGTCAGTGGGGC	0.701													7	7					0	0	1	0	0	
TXNDC11	51061	broad.mit.edu	37	16	11781746	11781746	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:11781746C>T	uc010buu.1	-	11	2263	c.2201G>A	c.(2200-2202)CGG>CAG	p.R734Q	TXNDC11_uc002dbg.1_Missense_Mutation_p.R707Q	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	734	Thioredoxin 2.				cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						GGGCAGGTTCCGAGCTAGCTG	0.527													8	30					0	0	1	0	0	
C16orf88	400506	broad.mit.edu	37	16	19725566	19725566	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:19725566G>T	uc002dgq.2	-	2	807	c.792C>A	c.(790-792)GCC>GCA	p.A264A	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	264	Lys-rich.					nucleolus					0						TCTTTGCGGAGGCCTTAGGGT	0.478													63	77					3.37043e-27	3.83733e-27	1	1	0	
PRKCB	5579	broad.mit.edu	37	16	24046762	24046762	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:24046762G>A	uc002dmd.2	+	5	620	c.423G>A	c.(421-423)AAG>AAA	p.K141K	PRKCB_uc002dme.2_Silent_p.K141K	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	141	Phorbol-ester/DAG-type 2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	ATGTGCACAAGCGCTGCGTGA	0.632													31	46					0	0	1	0	0	
IL21R	50615	broad.mit.edu	37	16	27441397	27441397	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:27441397C>T	uc002doq.1	+	2	238	c.5C>T	c.(4-6)CCG>CTG	p.P2L	IL21R_uc002dor.1_Missense_Mutation_p.P2L|IL21R_uc002dos.1_Missense_Mutation_p.P2L	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	2					natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						GTCAGCATGCCGCGTGGCTGG	0.701			T	BCL6	NHL								3	14					0	0	1	0	0	
ZNF688	146542	broad.mit.edu	37	16	30581665	30581665	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:30581665G>A	uc002dyt.2	-	3	1181	c.403C>T	c.(403-405)CTG>TTG	p.L135L	ZNF688_uc002dys.2_Silent_p.L121L|uc002dyu.2_5'Flank	NM_145271	NP_660314	P0C7X2	ZN688_HUMAN	zinc finger protein 688 isoform a	135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTTCCACCAGCACTTCAGGA	0.602													19	32					0	0	1	0	0	
ZNF646	9726	broad.mit.edu	37	16	31091327	31091327	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:31091327G>A	uc002eap.2	+	2	3971	c.3682G>A	c.(3682-3684)GGC>AGC	p.G1228S		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1228					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CCACCAGACCGGCCACTTTGG	0.627													12	31					0	0	1	0	0	
TGFB1I1	7041	broad.mit.edu	37	16	31485172	31485172	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:31485172C>T	uc002ecd.1	+	4	225	c.199C>T	c.(199-201)CGG>TGG	p.R67W	TGFB1I1_uc002ece.1_Missense_Mutation_p.R50W|TGFB1I1_uc010caq.1_5'UTR	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	67	Transcription activation (By similarity).|Interaction with PTK2B.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						ATGCAAGCCTCGGTCCCCAAA	0.632													26	91					0	0	1	0	0	
AKTIP	64400	broad.mit.edu	37	16	53534205	53534205	+	Translation_Start_Site	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:53534205T>C	uc002ehk.2	-	2	178	c.-33A>G	c.(-35--31)ATACA>ATGCA		AKTIP_uc002ehl.2_Translation_Start_Site|AKTIP_uc002ehm.2_Translation_Start_Site|AKTIP_uc010vgx.1_Translation_Start_Site	NM_001012398	NP_001012398	Q9H8T0	AKTIP_HUMAN	AKT interacting protein						apoptosis|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|positive regulation of protein binding|positive regulation of protein phosphorylation|protein transport	FHF complex|plasma membrane	acid-amino acid ligase activity|protein binding				0		all_cancers(37;0.14)				GTCAGTGGTGTATCATCCAAA	0.368													16	29					0	0	1	0	0	
KATNB1	10300	broad.mit.edu	37	16	57789031	57789031	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:57789031C>T	uc002eml.1	+	15	1671	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	433	Interaction with KATNA1 and NDEL1 (By similarity).|Interaction with PAFAH1B1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				ACACTTTCAGCTGGAGGTCCT	0.667													13	37					0	0	1	0	0	
CDH16	1014	broad.mit.edu	37	16	66949216	66949216	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:66949216G>A	uc002eql.2	-	6	563	c.490C>T	c.(490-492)CGA>TGA	p.R164*	CDH16_uc010cdy.2_Nonsense_Mutation_p.R164*|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	164	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		ATGTGGAATCGAAGATCCGAG	0.617													25	38					0	0	1	0	0	
TERF2	7014	broad.mit.edu	37	16	69400774	69400774	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:69400774C>T	uc002exd.2	-	7	1275	c.1150G>A	c.(1150-1152)GCT>ACT	p.A384T		NM_005652	NP_005643	Q15554	TERF2_HUMAN	telomeric repeat binding factor 2	384					age-dependent telomere shortening|cell cycle|cellular senescence|negative regulation of telomere maintenance via semi-conservative replication|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of transcription, DNA-dependent|telomeric loop formation	Golgi apparatus|nuclear telomere cap complex|nucleoplasm	double-stranded telomeric DNA binding|protein C-terminus binding|protein homodimerization activity			lung(1)	1		Ovarian(137;0.101)				GGCGCTGAAGCGGCCTCCTGG	0.557													12	29					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70841641	70841641	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:70841641G>A	uc002ezr.2	-	86	15333	c.15205C>T	c.(15205-15207)CGG>TGG	p.R5069W	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5070										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTCTTGGGCCGCACAGACTCT	0.517													38	69					0	0	1	0	0	
TAT	6898	broad.mit.edu	37	16	71602123	71602123	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:71602123G>A	uc002fap.2	-	12	1388	c.1289C>T	c.(1288-1290)GCG>GTG	p.A430V		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	430					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CCGGCTGCACGCCTCCAGCAT	0.507													26	28					0	0	1	0	0	
PHLPP2	23035	broad.mit.edu	37	16	71724517	71724517	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:71724517G>A	uc002fax.2	-	3	520	c.514C>T	c.(514-516)CGC>TGC	p.R172C	PHLPP2_uc010cgf.2_Missense_Mutation_p.R172C|PHLPP2_uc002fay.1_Missense_Mutation_p.R172C	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	172	PH.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						ACAACTAGGCGCTCAGCCCAC	0.468													25	47					0	0	1	0	0	
GLG1	2734	broad.mit.edu	37	16	74496029	74496029	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:74496029C>T	uc002fcy.3	-	22	3049	c.2999G>A	c.(2998-3000)CGC>CAC	p.R1000H	GLG1_uc002fcx.2_Missense_Mutation_p.R1000H|GLG1_uc002fcw.3_Missense_Mutation_p.R989H|GLG1_uc002fcz.3_Missense_Mutation_p.R417H	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	1000	Extracellular (Potential).|Cys-rich GLG1 15.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						AGGATCCAGGCGGTAGTCCAG	0.537													11	40					0	0	1	0	0	
GLG1	2734	broad.mit.edu	37	16	74519764	74519764	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:74519764G>A	uc002fcy.3	-	9	1551	c.1501C>T	c.(1501-1503)CGA>TGA	p.R501*	GLG1_uc002fcx.2_Nonsense_Mutation_p.R501*|GLG1_uc002fcw.3_Nonsense_Mutation_p.R490*|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	501	Extracellular (Potential).|Cys-rich GLG1 7.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						TTCAAAGCTCGATCAATGCGG	0.388													39	62					0	0	1	0	0	
TAF1C	9013	broad.mit.edu	37	16	84215812	84215812	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:84215812C>T	uc002fhn.2	-	7	945	c.717G>A	c.(715-717)AGG>AGA	p.R239R	TAF1C_uc002fhm.2_Silent_p.R172R|TAF1C_uc010vnx.1_Silent_p.R239R|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_5'UTR|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_5'UTR|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Silent_p.R239R	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	239					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						GGATACGCAGCCTGTCCTGGG	0.637													24	31					0	0	1	0	0	
KCNG4	93107	broad.mit.edu	37	16	84256129	84256129	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:84256129C>T	uc010voc.1	-	3	1375	c.1254G>A	c.(1252-1254)ACG>ACA	p.T418T		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	418	Selectivity filter (By similarity).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						CGTAGCCCACCGTTGTCATGG	0.642													12	44					0	0	1	0	0	
TUBB3	10381	broad.mit.edu	37	16	90001915	90001915	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:90001915C>T	uc002fph.1	+	4	1121	c.1056C>T	c.(1054-1056)GCC>GCT	p.A352A	TUBB3_uc002fpf.2_Silent_p.A699A|TUBB3_uc010ciz.1_Silent_p.A280A|TUBB3_uc002fpg.1_Silent_p.A206A|TUBB3_uc002fpi.1_Silent_p.A280A|TUBB3_uc002fpj.1_Silent_p.A280A|TUBB3_uc010cjb.1_Silent_p.A206A|TUBB3_uc002fpk.1_Silent_p.A206A	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	352					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		TGAAGGTGGCCGTGTGTGACA	0.597													75	134					0	0	1	0	0	
SMG6	23293	broad.mit.edu	37	17	2203754	2203754	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:2203754C>T	uc002fub.1	-	2	348	c.293G>A	c.(292-294)TGC>TAC	p.C98Y	SMG6_uc002fud.1_Missense_Mutation_p.C67Y	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	98					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						CAGTTCCTTGCAGACATCTTT	0.448													56	130					0	0	1	0	0	
KIAA0664	23277	broad.mit.edu	37	17	2598515	2598515	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:2598515T>C	uc002fuy.1	-	15	2573	c.2487A>G	c.(2485-2487)TTA>TTG	p.L829L	KIAA0664_uc002fux.1_Silent_p.L762L|KIAA0664_uc010ckc.1_5'Flank	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	829							binding			breast(2)	2						GTGGCACCTGTAAGTACGTCT	0.627													30	57					0	0	1	0	0	
TRPV3	162514	broad.mit.edu	37	17	3431416	3431416	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:3431416A>G	uc002fvt.1	-	11	1728	c.1406T>C	c.(1405-1407)ATC>ACC	p.I469T	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.I453T|TRPV3_uc010vri.1_Missense_Mutation_p.I424T|TRPV3_uc010vrj.1_Missense_Mutation_p.I453T|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.I453T|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.I469T|TRPV3_uc002fvu.2_Missense_Mutation_p.I469T|TRPV3_uc010vrn.1_Missense_Mutation_p.I51T	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	469	Extracellular (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GGGGTGCGGGATGGCCTGCAG	0.567													15	13					0	0	1	0	0	
CTNS	1497	broad.mit.edu	37	17	3558639	3558639	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:3558639C>T	uc002fwb.2	+	7	1047	c.454C>T	c.(454-456)CGG>TGG	p.R152W	CTNS_uc002fwa.2_Missense_Mutation_p.R152W|CTNS_uc010ckj.2_Missense_Mutation_p.R152W|CTNS_uc010vrv.1_Missense_Mutation_p.R5W|CTNS_uc010vrw.1_Missense_Mutation_p.R44W	NM_004937	NP_004928	O60931	CTNS_HUMAN	cystinosin isoform 2	152	Cytoplasmic (Potential).|PQ-loop 1.				ATP metabolic process|brain development|cognition|glutathione metabolic process	integral to membrane|late endosome|lysosomal membrane	L-cystine transmembrane transporter activity				0				COAD - Colon adenocarcinoma(5;0.0829)	L-Cystine(DB00138)	GAATTGGAGGCGGAAAAGGTA	0.592													46	105					0	0	1	0	0	
ZZEF1	23140	broad.mit.edu	37	17	3974038	3974038	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:3974038C>T	uc002fxe.2	-	26	4079	c.4015G>A	c.(4015-4017)GCC>ACC	p.A1339T	ZZEF1_uc002fxj.1_5'UTR	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1339							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCAAAGGTGGCGTTCACAGCT	0.398													48	71					0	0	1	0	0	
CAMTA2	23125	broad.mit.edu	37	17	4885435	4885435	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:4885435A>G	uc002gah.1	-	6	468	c.360T>C	c.(358-360)GTT>GTC	p.V120V	CAMTA2_uc010cku.1_Silent_p.V143V|CAMTA2_uc002gag.1_Intron|CAMTA2_uc002gai.1_Silent_p.V122V|CAMTA2_uc010ckv.1_5'Flank|CAMTA2_uc010vsu.1_5'UTR	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	120	CG-1.				cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						TGGAAGAGTGAACGTAGCAGC	0.592													32	66					0	0	1	0	0	
NUP88	4927	broad.mit.edu	37	17	5312106	5312106	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:5312106G>A	uc002gbo.1	-	5	830	c.804C>T	c.(802-804)TAC>TAT	p.Y268Y	NUP88_uc010vsx.1_Silent_p.Y268Y|NUP88_uc010cle.1_Silent_p.Y267Y|NUP88_uc010vsy.1_Silent_p.Y268Y	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa	268					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						CATATAAGATGTACAGTGGGT	0.443													20	56					0	0	1	0	0	
ACADVL	37	broad.mit.edu	37	17	7127562	7127562	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:7127562G>A	uc002gev.2	+	15	1683	c.1532G>A	c.(1531-1533)CGG>CAG	p.R511Q	ACADVL_uc010vtp.1_Missense_Mutation_p.R521Q|ACADVL_uc002gew.2_Missense_Mutation_p.R489Q|ACADVL_uc002gex.2_Missense_Mutation_p.R435Q|uc002gey.1_5'Flank|MIR324_hsa-mir-324|MI0000813_5'Flank	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	511	Membrane-anchoring (Probable).				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						CAGCTGAGGCGGTAGGCTTAG	0.602													11	32					0	0	1	0	0	
ALOX12B	242	broad.mit.edu	37	17	7979592	7979592	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:7979592C>T	uc002gjy.1	-	11	1694	c.1433G>A	c.(1432-1434)AGC>AAC	p.S478N		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	478	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GAGGTAGAGGCTGTCATAGGT	0.597										Multiple Myeloma(8;0.094)			14	17					0	0	1	0	0	
C17orf59	54785	broad.mit.edu	37	17	8093038	8093038	+	Missense_Mutation	SNP	C	G	G	rs144247363	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:8093038C>G	uc010vut.1	-	1	527	c.421G>C	c.(421-423)GAG>CAG	p.E141Q		NM_017622	NP_060092	Q96GS4	CQ059_HUMAN	hypothetical protein LOC54785	141											0						TCTTCCTCCTCCTGCTGCTCA	0.716													17	27					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10538325	10538325	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:10538325C>T	uc002gmq.1	-	30	4265	c.4188G>A	c.(4186-4188)CAG>CAA	p.Q1396Q		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1396	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CTTGAAGGCGCTGAGCAAGTT	0.433													22	46					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10541627	10541627	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:10541627C>T	uc002gmq.1	-	26	3539	c.3462G>A	c.(3460-3462)GCG>GCA	p.A1154A		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1154	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGACGCCTCCCGCCTCCTCCA	0.652													24	35					0	0	1	0	0	
ELAC2	60528	broad.mit.edu	37	17	12897751	12897751	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:12897751T>G	uc002gnz.3	-	22	2194	c.2099A>C	c.(2098-2100)AAG>ACG	p.K700T	ELAC2_uc002gnu.3_Missense_Mutation_p.K97T|ELAC2_uc002gnv.3_Missense_Mutation_p.K328T|ELAC2_uc002gnw.3_Missense_Mutation_p.K356T|ELAC2_uc002gnx.3_Missense_Mutation_p.K460T|ELAC2_uc010vvo.1_Missense_Mutation_p.K498T|ELAC2_uc010vvp.1_Missense_Mutation_p.K681T|ELAC2_uc010vvq.1_Missense_Mutation_p.K699T|ELAC2_uc010vvr.1_Missense_Mutation_p.K660T	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	700					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CCTGTGTGTCTTTTCCACTGC	0.557									Hereditary_Prostate_Cancer				21	228					0	0	1	0	0	
TEKT3	64518	broad.mit.edu	37	17	15217493	15217493	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:15217493C>T	uc002gon.2	-	6	976	c.789G>A	c.(787-789)ACG>ACA	p.T263T		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	263					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TCCGGTAAGCCGTCTGTTTGT	0.557													13	28					0	0	1	0	0	
ZNF624	57547	broad.mit.edu	37	17	16550695	16550695	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:16550695G>A	uc010cpi.1	-	3	184	c.101C>T	c.(100-102)ACC>ATC	p.T34I		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	34					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		ATCTGGCTGGGTAACTTCAGG	0.284													36	78					0	0	1	0	0	
NT5M	56953	broad.mit.edu	37	17	17209922	17209922	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:17209922C>T	uc002grf.2	+	2	518	c.333C>T	c.(331-333)GCC>GCT	p.A111A	NT5M_uc002gre.2_Silent_p.A111A|NT5M_uc002grg.2_Silent_p.A111A	NM_020201	NP_064586	Q9NPB1	NT5M_HUMAN	5',3'-nucleotidase, mitochondrial precursor	111					DNA replication|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	5'-nucleotidase activity|metal ion binding|nucleotide binding				0						TGCCAGGGGCCGTGGAAGCTG	0.493													42	103					0	0	1	0	0	
MYO15A	51168	broad.mit.edu	37	17	18023025	18023025	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:18023025C>T	uc010vxh.1	+	2	1249	c.911C>T	c.(910-912)ACC>ATC	p.T304I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	304	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCGGGGTACACCTACGGCTAC	0.627													33	87					0	0	1	0	0	
MYO15A	51168	broad.mit.edu	37	17	18045519	18045519	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:18045519C>T	uc010vxh.1	+	23	6114	c.5776C>T	c.(5776-5778)CGC>TGC	p.R1926C		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1926	Neck or regulatory domain.|IQ 2.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCGCTCTCTGCGCCACAAGAT	0.597													9	23					0	0	1	0	0	
SMCR8	140775	broad.mit.edu	37	17	18219551	18219551	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:18219551G>A	uc002gsy.3	+	1	958	c.448G>A	c.(448-450)GTG>ATG	p.V150M		NM_144775	NP_658988	Q8TEV9	SMCR8_HUMAN	Smith-Magenis syndrome chromosome region,	150										central_nervous_system(1)	1						CCGTGGCTTCGTGAGGCCGTT	0.532													38	62					0	0	1	0	0	
SMCR8	140775	broad.mit.edu	37	17	18225952	18225952	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:18225952C>T	uc002gsy.3	+	2	2892	c.2382C>T	c.(2380-2382)GCC>GCT	p.A794A		NM_144775	NP_658988	Q8TEV9	SMCR8_HUMAN	Smith-Magenis syndrome chromosome region,	794										central_nervous_system(1)	1						CTGCCGGTGCCGGTACCCTCC	0.637													16	65					0	0	1	0	0	
TNFAIP1	7126	broad.mit.edu	37	17	26671481	26671481	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:26671481C>T	uc002hax.1	+	7	825	c.806C>T	c.(805-807)GCC>GTC	p.A269V	TNFAIP1_uc002hay.2_Missense_Mutation_p.A269V|TNFAIP1_uc010waf.1_Missense_Mutation_p.A165V	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	269					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		TTGTTGGAGGCCACAAGCCGT	0.592													16	32					0	0	1	0	0	
NEK8	284086	broad.mit.edu	37	17	27064710	27064710	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:27064710C>T	uc002hcp.2	+	6	845	c.845C>T	c.(844-846)GCC>GTC	p.A282V		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	282						cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.R282Q(1)		stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					AAGTCCGTGGCCCCCAGCAAC	0.597													32	62					0	0	1	0	0	
NEK8	284086	broad.mit.edu	37	17	27068189	27068189	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:27068189G>A	uc002hcp.2	+	13	1826	c.1826G>A	c.(1825-1827)GGC>GAC	p.G609D	TRAF4_uc002hcq.1_5'Flank|TRAF4_uc002hcs.2_5'Flank	NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	609	RCC1 4.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					AAGGTCCAAGGCCTTGAGGGC	0.582													28	50					0	0	1	0	0	
NF1	4763	broad.mit.edu	37	17	29509634	29509634	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:29509634T>C	uc002hgg.2	+	8	1172	c.839T>C	c.(838-840)ATA>ACA	p.I280T	NF1_uc002hge.1_Missense_Mutation_p.I280T|NF1_uc002hgf.1_Missense_Mutation_p.I280T|NF1_uc002hgh.2_Missense_Mutation_p.I280T|NF1_uc010csn.1_Missense_Mutation_p.I140T	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	280					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGTCCAGAAATAATCCAGGAT	0.368			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			8	16					0	0	1	0	0	
GPR179	440435	broad.mit.edu	37	17	36484278	36484278	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:36484278C>A	uc002hpz.2	-	11	5195	c.5174G>T	c.(5173-5175)AGG>ATG	p.R1725M		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1725	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TGGAGATTTCCTAATGGCCTC	0.547													4	77					0.00909568	0.00920063	1	1	0	
FBXO47	494188	broad.mit.edu	37	17	37107906	37107906	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:37107906G>A	uc002hrc.2	-	6	744	c.544C>T	c.(544-546)CGC>TGC	p.R182C		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	182											0						TTATAAACGCGATGGCACTCA	0.358													17	33					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	37188613	37188613	+	RNA	SNP	C	T	T	rs35008241	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:37188613C>T	uc002hrd.1	+	1		c.2455C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		TGTCGTGTATCGATCTCAGCC	0.512													5	109					0	0	1	0	0	
KRT34	3885	broad.mit.edu	37	17	39534393	39534393	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:39534393G>T	uc002hwm.2	-	7	1241	c.1229C>A	c.(1228-1230)CCC>CAC	p.P410H		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	410	Tail.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				TGGGTTGCAGGGGAGCCTAGG	0.483													7	23					0.0293803	0.0296055	1	1	0	
KRT35	3886	broad.mit.edu	37	17	39633363	39633363	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:39633363C>T	uc002hws.2	-	7	1356	c.1313G>A	c.(1312-1314)CGC>CAC	p.R438H		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	438	Tail.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GCAGTTTGTGCGGGCTGCACT	0.612													15	41					0	0	1	0	0	
CCR10	2826	broad.mit.edu	37	17	40832555	40832555	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:40832555A>G	uc002iax.3	-	2	109	c.105T>C	c.(103-105)GAT>GAC	p.D35D	CNTNAP1_uc002iay.2_5'Flank|CNTNAP1_uc010wgs.1_5'Flank	NM_016602	NP_057686	P46092	CCR10_HUMAN	CC chemokine receptor 10	35	Extracellular (Potential).					integral to plasma membrane					0		Breast(137;0.000153)		BRCA - Breast invasive adenocarcinoma(366;0.14)		AGGCCTGGACATCGGCCTTGT	0.637													18	23					0	0	1	0	0	
BRCA1	672	broad.mit.edu	37	17	41243800	41243800	+	Missense_Mutation	SNP	C	T	T	rs28897686	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:41243800C>T	uc002icq.2	-	10	3980	c.3748G>A	c.(3748-3750)GAG>AAG	p.E1250K	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.E1179K|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.E1203K|BRCA1_uc002ict.2_Missense_Mutation_p.E1250K|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.E1250K|BRCA1_uc002ide.1_Missense_Mutation_p.E1081K|BRCA1_uc010cyy.1_Missense_Mutation_p.E1250K|BRCA1_uc010whs.1_Missense_Mutation_p.E1250K|BRCA1_uc010cyz.2_Missense_Mutation_p.E1203K|BRCA1_uc010cza.2_Missense_Mutation_p.E1224K|BRCA1_uc010wht.1_Missense_Mutation_p.E954K	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1250					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GACAGACACTCGGTAGCAACG	0.398			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			36	92					0	0	1	0	0	
C1QL1	10882	broad.mit.edu	37	17	43045010	43045010	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:43045010A>C	uc002ihv.2	-	1	635	c.407T>G	c.(406-408)CTC>CGC	p.L136R		NM_006688	NP_006679	O75973	C1QRF_HUMAN	complement component 1, q subcomponent-like 1	136	C1q.				locomotory behavior	collagen					0		Prostate(33;0.155)				GGGGTTCTTGAGGCCGGCGTA	0.473													33	53					0	0	1	0	0	
NMT1	4836	broad.mit.edu	37	17	43174504	43174504	+	Missense_Mutation	SNP	G	A	A	rs150418753		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:43174504G>A	uc002ihz.2	+	6	623	c.605G>A	c.(604-606)CGG>CAG	p.R202Q	NMT1_uc002iia.2_RNA	NM_021079	NP_066565	P30419	NMT1_HUMAN	N-myristoyltransferase 1	202					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|N-terminal protein myristoylation|protein lipoylation	actin cytoskeleton|cell junction|cytosol	glycylpeptide N-tetradecanoyltransferase activity				0		Prostate(33;0.155)				AGGGCTCTCCGGCCACCCGGC	0.602											OREG0024469	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	76					0	0	1	0	0	
CRHR1	1394	broad.mit.edu	37	17	43907506	43907506	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:43907506G>A	uc010dap.2	+	7	833	c.568G>A	c.(568-570)GCC>ACC	p.A190T	CRHR1_uc010wjx.1_5'UTR|CRHR1_uc002ijp.2_Missense_Mutation_p.A60T|CRHR1_uc002ijm.2_Missense_Mutation_p.A161T|CRHR1_uc002ijn.2_Missense_Mutation_p.A121T|CRHR1_uc010dar.2_Missense_Mutation_p.A161T|CRHR1_uc010dao.2_Missense_Mutation_p.A60T|CRHR1_uc010daq.2_Intron|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	190	Helical; Name=2; (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CCTCATCTCCGCCTTCATCCT	0.627													35	44					0	0	1	0	0	
CBX1	10951	broad.mit.edu	37	17	46154279	46154279	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:46154279G>A	uc002ind.3	-	2	569	c.88C>T	c.(88-90)CGA>TGA	p.R30*	CBX1_uc002ine.3_Nonsense_Mutation_p.R30*	NM_006807	NP_006798	P83916	CBX1_HUMAN	heterochromatin protein 1-beta	30	Chromo 1.					nuclear heterochromatin|nucleoplasm|spindle	chromatin binding|enzyme binding				0						TTTACCACTCGACGGTCGAGA	0.473													29	75					0	0	1	0	0	
SNX11	29916	broad.mit.edu	37	17	46196139	46196139	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:46196139G>A	uc002inf.1	+	6	658	c.304G>A	c.(304-306)GGT>AGT	p.G102S	SNX11_uc010wlg.1_Missense_Mutation_p.G94S|SNX11_uc010wlh.1_Missense_Mutation_p.G94S|SNX11_uc010wli.1_Missense_Mutation_p.G41S|SNX11_uc010wlj.1_5'UTR|SNX11_uc002ing.1_Missense_Mutation_p.G102S|SNX11_uc002inh.1_Missense_Mutation_p.G102S	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	102	PX.				cell communication|protein transport	membrane	phosphatidylinositol binding				0						GCGACGACAAGGTCTGCAGCA	0.552													19	31					0	0	1	0	0	
XYLT2	64132	broad.mit.edu	37	17	48437479	48437479	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:48437479G>A	uc002iqo.2	+	11	2534	c.2425G>A	c.(2425-2427)GAG>AAG	p.E809K	XYLT2_uc010dbo.2_RNA	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	809	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					CCCTGCGCTCGAGGCCTGGAC	0.662													13	25					0	0	1	0	0	
SPATA20	64847	broad.mit.edu	37	17	48629529	48629529	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:48629529C>T	uc002irf.2	+	13	2038	c.1897C>T	c.(1897-1899)CGT>TGT	p.R633C	SPATA20_uc002irc.2_Missense_Mutation_p.R300C|SPATA20_uc002ire.2_Missense_Mutation_p.R589C|SPATA20_uc002ird.2_Missense_Mutation_p.R649C|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	633					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CCTGCCCCTGCGTCTGAAGGA	0.657													13	25					0	0	1	0	0	
MKS1	54903	broad.mit.edu	37	17	56284534	56284534	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:56284534C>T	uc002ivr.1	-	15	1394	c.1319G>A	c.(1318-1320)GGC>GAC	p.G440D	MKS1_uc010wnq.1_Missense_Mutation_p.G237D|MKS1_uc002ivs.1_Intron	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	440					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						AGCCACCGTGCCAAGCTCCAC	0.572													5	102					0	0	1	0	0	
BZRAP1	9256	broad.mit.edu	37	17	56386607	56386607	+	Silent	SNP	G	A	A	rs148608257	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:56386607G>A	uc002ivx.3	-	22	4897	c.4026C>T	c.(4024-4026)GAC>GAT	p.D1342D	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Silent_p.D1282D|BZRAP1_uc010wnt.1_Silent_p.D1342D	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1342	Poly-Glu.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					cctcctcctcgtcctcctctt	0.473													34	37					0	0	1	0	0	
SMARCD2	6603	broad.mit.edu	37	17	61911635	61911635	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:61911635C>T	uc010deb.1	-	8	1292	c.975G>A	c.(973-975)ACG>ACA	p.T325T	SMARCD2_uc010wpt.1_Silent_p.T277T|SMARCD2_uc010dea.1_Silent_p.T250T|SMARCD2_uc010dec.1_Silent_p.T304T	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	325	SWIB.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						CCCTCGTCTGCGTGTGCACTC	0.567											OREG0024642	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	10					0	0	1	0	0	
GH2	2689	broad.mit.edu	37	17	61958199	61958199	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:61958199C>T	uc002jco.1	-	4	451	c.389G>A	c.(388-390)GGC>GAC	p.G130D	GH2_uc002jcj.2_Missense_Mutation_p.G130D|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Missense_Mutation_p.G130D|GH2_uc002jcm.1_Missense_Mutation_p.G130D|GH2_uc002jcn.1_Missense_Mutation_p.G115D	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	130						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						GTCCGAGGCGCCATACACCAG	0.612													41	58					0	0	1	0	0	
CCDC45	90799	broad.mit.edu	37	17	62523312	62523312	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:62523312T>G	uc002jem.2	+	11	1294	c.1236T>G	c.(1234-1236)GAT>GAG	p.D412E	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Missense_Mutation_p.D248E	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	412						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			AGGTAGAGGATGGAACTGAGG	0.448													13	28					0	0	1	0	0	
LOC651250	651250	broad.mit.edu	37	17	66131759	66131759	+	RNA	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:66131759G>A	uc002jgq.2	+	6		c.10882G>A			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						GCCTCCTGCCGCGGAACCTTC	0.687													11	23					0	0	1	0	0	
SOX9	6662	broad.mit.edu	37	17	70120416	70120416	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:70120416A>G	uc002jiw.2	+	3	1790	c.1418A>G	c.(1417-1419)CAG>CGG	p.Q473R		NM_000346	NP_000337	P48436	SOX9_HUMAN	transcription factor SOX9	473					cAMP-mediated signaling|negative regulation of transcription, DNA-dependent|positive regulation of branching involved in ureteric bud morphogenesis|protein complex assembly|renal vesicle induction	nucleus|protein complex	core promoter sequence-specific DNA binding|enhancer binding|protein kinase A catalytic subunit binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription				0		Colorectal(1115;0.245)	STAD - Stomach adenocarcinoma(260;0.119)			AACCCCGCTCAGCGCCCCATG	0.637													31	71					0	0	1	0	0	
GALR2	8811	broad.mit.edu	37	17	74073226	74073226	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:74073226C>T	uc002jqm.1	+	2	959	c.878C>T	c.(877-879)GCG>GTG	p.A293V	ZACN_uc002jqn.2_5'Flank|ZACN_uc002jqo.2_5'Flank|ZACN_uc010dgu.2_5'Flank	NM_003857	NP_003848	O43603	GALR2_HUMAN	galanin receptor 2	293	Cytoplasmic (Potential).				digestion|elevation of cytosolic calcium ion concentration|feeding behavior|learning or memory|muscle contraction	integral to membrane|plasma membrane	galanin receptor activity				0						ATCGTTTACGCGCTGGTCTCC	0.677													19	16					0	0	1	0	0	
QRICH2	84074	broad.mit.edu	37	17	74272799	74272799	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:74272799C>T	uc002jrd.1	-	17	4997	c.4817G>A	c.(4816-4818)CGG>CAG	p.R1606Q	QRICH2_uc010wsz.1_Intron|QRICH2_uc010dgw.1_Missense_Mutation_p.R450Q	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1606							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						TGTGTCCATCCGTCCCTTGTA	0.592													18	50					0	0	1	0	0	
UBE2O	63893	broad.mit.edu	37	17	74395743	74395743	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:74395743C>A	uc002jrm.3	-	9	1480	c.1415G>T	c.(1414-1416)AGG>ATG	p.R472M	UBE2O_uc002jrn.3_Missense_Mutation_p.R472M|UBE2O_uc002jrl.3_Missense_Mutation_p.R75M	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	472							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CGAGTGCAGCCTGTCATCTCT	0.612													4	74					0.00024832	0.000254861	1	1	0	
UBE2O	63893	broad.mit.edu	37	17	74396252	74396252	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:74396252C>T	uc002jrm.3	-	8	1196	c.1131G>A	c.(1129-1131)CAG>CAA	p.Q377Q	UBE2O_uc002jrn.3_Silent_p.Q377Q|UBE2O_uc002jrl.3_5'Flank	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	377							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						AGCCCTCCCCCTGGGCGCAGT	0.562													18	57					0	0	1	0	0	
SEPT9	10801	broad.mit.edu	37	17	75484868	75484868	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:75484868T>A	uc002jts.3	+	7	1310	c.1184T>A	c.(1183-1185)GTC>GAC	p.V395D	SEPT9_uc010wtk.1_Missense_Mutation_p.V376D|SEPT9_uc002jtt.3_Missense_Mutation_p.V231D|SEPT9_uc002jtu.3_Missense_Mutation_p.V377D|SEPT9_uc002jtv.2_Missense_Mutation_p.V388D|SEPT9_uc002jtw.2_Missense_Mutation_p.V231D|SEPT9_uc010wtl.1_Missense_Mutation_p.V171D|SEPT9_uc002jty.3_Missense_Mutation_p.V144D|SEPT9_uc010wtm.1_Missense_Mutation_p.V144D|SEPT9_uc010wtn.1_Missense_Mutation_p.V144D|SEPT9_uc010dhd.2_Missense_Mutation_p.V283D	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	395					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			CAGGAGGAGGTCAACATCAAC	0.602													14	65					0	0	1	0	0	
CCDC40	55036	broad.mit.edu	37	17	78021186	78021186	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:78021186G>A	uc010dht.2	+	4	688	c.661G>A	c.(661-663)GTC>ATC	p.V221I	CCDC40_uc010wub.1_Missense_Mutation_p.V221I|CCDC40_uc002jxm.3_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	221					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GGAGGAGTTCGTCTCGCAGGA	0.657											OREG0031512	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	6	12					0	0	1	0	0	
RNF213	57674	broad.mit.edu	37	17	78341576	78341576	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:78341576C>T	uc002jyh.1	+	18	6342	c.6119C>T	c.(6118-6120)ACG>ATG	p.T2040M	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.T422M	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GACGTGAAGACGCACGGGCCT	0.592													26	41					0	0	1	0	0	
BAHCC1	57597	broad.mit.edu	37	17	79412060	79412060	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:79412060G>A	uc002kaf.2	+	7	2691	c.2691G>A	c.(2689-2691)GCG>GCA	p.A897A	BAHCC1_uc002kae.2_Silent_p.A96A	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	897	Pro-rich.						DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			TGGACCAGGCGTCACTGTGGC	0.721													5	6					0	0	1	0	0	
ARL16	339231	broad.mit.edu	37	17	79649138	79649138	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:79649138G>A	uc002kbf.2	-	4	447	c.348C>T	c.(346-348)TCC>TCT	p.S116S	ARL16_uc002kbe.2_Silent_p.S45S|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	116							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GCTGCACACAGGATGCAGAGA	0.537													7	20					0	0	1	0	0	
PCYT2	5833	broad.mit.edu	37	17	79862799	79862799	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:79862799G>A	uc002kcf.1	-	13	1143	c.1080C>T	c.(1078-1080)AAC>AAT	p.N360N	PCYT2_uc010wva.1_Silent_p.N328N|PCYT2_uc010wvb.1_Silent_p.N328N|PCYT2_uc002kce.1_Silent_p.N282N|PCYT2_uc002kcg.1_Silent_p.N389N|PCYT2_uc002kch.1_Silent_p.N378N|PCYT2_uc002kci.1_Silent_p.N319N|PCYT2_uc010dii.1_Silent_p.N338N|PCYT2_uc010wvc.1_Silent_p.N282N	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	360					phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CCTTCTTCTGGTTTCGCGCCT	0.637													14	10					0	0	1	0	0	
FASN	2194	broad.mit.edu	37	17	80044378	80044378	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:80044378G>A	uc002kdu.2	-	22	3601	c.3484C>T	c.(3484-3486)CCC>TCC	p.P1162S	FASN_uc002kdw.1_Missense_Mutation_p.P378S	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1162					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TCCAGTCCGGGCACCACCATC	0.677													13	30					0	0	1	0	0	
FASN	2194	broad.mit.edu	37	17	80046321	80046321	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:80046321G>A	uc002kdu.2	-	16	2655	c.2538C>T	c.(2536-2538)GCC>GCT	p.A846A	FASN_uc002kdw.1_Silent_p.A62A	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	846					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	AGTCCTCGGCGGCCGGCACGT	0.657													14	32					0	0	1	0	0	
FN3K	64122	broad.mit.edu	37	17	80708494	80708494	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:80708494C>T	uc010wvs.1	+	6	854	c.793C>T	c.(793-795)CGG>TGG	p.R265W	TBCD_uc002kfx.1_5'Flank|TBCD_uc002kfy.1_5'Flank|TBCD_uc002kfz.2_5'Flank	NM_022158	NP_071441	Q9H479	FN3K_HUMAN	fructosamine 3 kinase	265					fructoselysine metabolic process		fructosamine-3-kinase activity				0	Breast(20;0.000523)|all_neural(118;0.0952)		BRCA - Breast invasive adenocarcinoma(99;0.0344)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			CGCCTACCACCGGAAGATCCC	0.567													69	158					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	7043243	7043243	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:7043243A>G	uc002knm.2	-	8	1232	c.1138T>C	c.(1138-1140)TAT>CAT	p.Y380H	LAMA1_uc010wzj.1_5'UTR	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	380	Laminin EGF-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTCTATAATATCCATCAATA	0.403													14	170					0	0	1	0	0	
PTPRM	5797	broad.mit.edu	37	18	8113519	8113519	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:8113519G>A	uc002knn.3	+	12	2395	c.1892G>A	c.(1891-1893)CGA>CAA	p.R631Q	PTPRM_uc010dkv.2_Missense_Mutation_p.R631Q|PTPRM_uc010wzl.1_Missense_Mutation_p.R418Q	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	631	Fibronectin type-III 4.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GAACGTCCTCGAAGAACTAAA	0.388													27	40					0	0	1	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8825585	8825585	+	Silent	SNP	G	A	A	rs148473485		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:8825585G>A	uc002knr.2	+	15	4219	c.4077G>A	c.(4075-4077)TCG>TCA	p.S1359S	KIAA0802_uc002knq.2_Silent_p.S1318S|KIAA0802_uc002kns.2_Silent_p.S699S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1669											0						CACCCGTGTCGTCTCCTTCCC	0.622													11	14					0	0	1	0	0	
SLC14A2	8170	broad.mit.edu	37	18	43207048	43207048	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:43207048A>G	uc010dnj.2	+	5	778	c.457A>G	c.(457-459)ACA>GCA	p.T153A	SLC14A2_uc002lbb.2_Missense_Mutation_p.T153A|SLC14A2_uc002lbe.2_Missense_Mutation_p.T153A	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	153	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TCCCTGGTGGACAATCACTGG	0.552													23	132					0	0	1	0	0	
SMAD2	4087	broad.mit.edu	37	18	45395727	45395727	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:45395727T>A	uc002lcy.2	-	4	655	c.407A>T	c.(406-408)GAT>GTT	p.D136V	SMAD2_uc002lcz.2_Missense_Mutation_p.D136V|SMAD2_uc010xdc.1_Missense_Mutation_p.D106V|SMAD2_uc010xdd.1_Missense_Mutation_p.D106V	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	136	MH1.				anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						ACTGTGAAGATCAGGCCAGCG	0.423													15	32					0	0	1	0	0	
NEDD4L	23327	broad.mit.edu	37	18	56002750	56002750	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:56002750C>T	uc002lgy.2	+	13	1380	c.1106C>T	c.(1105-1107)ACG>ATG	p.T369M	NEDD4L_uc002lgz.2_Intron|NEDD4L_uc002lgx.2_Intron|NEDD4L_uc010xee.1_Missense_Mutation_p.T248M|NEDD4L_uc002lhc.2_Missense_Mutation_p.T361M|NEDD4L_uc002lhd.2_Missense_Mutation_p.T248M|NEDD4L_uc002lhb.2_Intron|NEDD4L_uc002lhe.2_Intron|NEDD4L_uc002lhf.2_Intron|NEDD4L_uc002lhg.2_Missense_Mutation_p.T248M|NEDD4L_uc002lhh.2_Intron|NEDD4L_uc010dpm.1_Intron	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	369					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						TCAACTGTCACGGGTGGTGAG	0.478													22	46					0	0	1	0	0	
SERPINB8	5271	broad.mit.edu	37	18	61654234	61654234	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:61654234C>A	uc002ljv.2	+	7	1016	c.847C>A	c.(847-849)CTT>ATT	p.L283I	SERPINB8_uc002lju.2_Missense_Mutation_p.L283I|SERPINB8_uc010xex.1_Missense_Mutation_p.L101I	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	283					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				GGAGCCTTTCCTTCGAAGATT	0.423													21	55					1.66031e-10	1.79143e-10	1	1	0	
ZNF516	9658	broad.mit.edu	37	18	74153390	74153390	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:74153390G>A	uc010dqx.1	-	2	1856	c.1621C>T	c.(1621-1623)CGC>TGC	p.R541C	ZNF516_uc002lme.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	541					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CTCTCGCGGCGCGCGCGGCGA	0.697													4	12					0	0	1	0	0	
ZNF236	7776	broad.mit.edu	37	18	74606996	74606996	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:74606996G>A	uc002lmi.2	+	10	1637	c.1439G>A	c.(1438-1440)CGC>CAC	p.R480H	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	480					cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		AACGGCGTGCGCTGGCATGTG	0.662													55	92					0	0	1	0	0	
MED16	10025	broad.mit.edu	37	19	873537	873537	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:873537A>C	uc002lqd.1	-	11	1968	c.1817T>G	c.(1816-1818)CTG>CGG	p.L606R	MED16_uc010drw.1_Missense_Mutation_p.L431R|MED16_uc002lqe.2_Missense_Mutation_p.L595R|MED16_uc002lqf.2_Missense_Mutation_p.L595R|MED16_uc010xfv.1_RNA|MED16_uc010xfw.1_Missense_Mutation_p.L526R|MED16_uc010xfx.1_Missense_Mutation_p.L451R|MED16_uc010xfy.1_Missense_Mutation_p.L183R|MED16_uc010xfz.1_RNA	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	606					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTTCATGTCCAGCACAAATTC	0.582													22	50					0	0	1	0	0	
MBD3	53615	broad.mit.edu	37	19	1581156	1581156	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:1581156G>A	uc002ltl.1	-	5	634	c.612C>T	c.(610-612)CCC>CCT	p.P204P	MBD3_uc002ltj.2_Silent_p.P204P|MBD3_uc002ltk.2_Silent_p.P172P	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	204					transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCATACGCCGGGGTTCTTCT	0.657													9	37					0	0	1	0	0	
TCF3	6929	broad.mit.edu	37	19	1627405	1627405	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:1627405C>T	uc002ltr.2	-	6	386	c.319G>A	c.(319-321)GCC>ACC	p.A107T	TCF3_uc002ltt.3_Missense_Mutation_p.A107T|TCF3_uc002ltq.2_Missense_Mutation_p.A56T|TCF3_uc002lts.1_Missense_Mutation_p.A23T	NM_003200	NP_003191	P15923	TFE2_HUMAN	transcription factor 3 isoform E12	107					B cell lineage commitment|B cell lineage commitment|G1 phase of mitotic cell cycle|immunoglobulin V(D)J recombination|muscle cell differentiation|positive regulation of B cell proliferation|positive regulation of cell cycle|positive regulation of muscle cell differentiation|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus|protein complex|transcription factor complex	bHLH transcription factor binding|DNA binding|E-box binding|identical protein binding|mitogen-activated protein kinase kinase kinase binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|vitamin D response element binding			lung(2)|breast(2)|ovary(1)|large_intestine(1)|skin(1)	7		Acute lymphoblastic leukemia(61;5.94e-12)|all_hematologic(61;1.27e-07)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGCATAGGCGCCCCGCTCA	0.622			T	PBX1|HLF|TFPT	pre B-ALL								5	18					0	0	1	0	0	
C19orf28	126321	broad.mit.edu	37	19	3547998	3547998	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:3547998C>T	uc002lxz.2	-	4	855	c.685G>A	c.(685-687)GCC>ACC	p.A229T	C19orf28_uc002lxw.2_Missense_Mutation_p.A229T|C19orf28_uc002lxx.2_Missense_Mutation_p.A229T|C19orf28_uc002lxy.2_Missense_Mutation_p.A220T	NM_174983	NP_778148	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform c	229	Helical; (Potential).				transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGAACACGGCGCCGACACCC	0.711													19	14					0	0	1	0	0	
PLIN4	729359	broad.mit.edu	37	19	4512048	4512048	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:4512048C>T	uc002mar.1	-	3	1882	c.1882G>A	c.(1882-1884)GTG>ATG	p.V628M	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	628	27 X 33 AA approximate tandem repeat.|17.					lipid particle|plasma membrane					0						GCCACGTTCACGGCACTGGTG	0.552													64	103					0	0	1	0	0	
LONP1	9361	broad.mit.edu	37	19	5705847	5705847	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:5705847T>C	uc002mcx.2	-	8	1336	c.1303A>G	c.(1303-1305)ATG>GTG	p.M435V	LONP1_uc002mcy.2_Missense_Mutation_p.M371V|LONP1_uc010duh.2_Missense_Mutation_p.M176V|LONP1_uc010dui.2_Missense_Mutation_p.M419V|LONP1_uc002mcz.2_Missense_Mutation_p.M239V	NM_004793	NP_004784	P36776	LONM_HUMAN	mitochondrial lon peptidase 1 precursor	435					cellular chaperone-mediated protein complex assembly|cellular response to oxidative stress|misfolded or incompletely synthesized protein catabolic process|mitochondrial DNA metabolic process|oxidation-dependent protein catabolic process|protein homooligomerization|response to hypoxia	mitochondrial nucleoid	ADP binding|ATP binding|ATP-dependent peptidase activity|DNA polymerase binding|G-quadruplex DNA binding|mitochondrial heavy strand promoter anti-sense binding|mitochondrial light strand promoter anti-sense binding|sequence-specific DNA binding|serine-type endopeptidase activity|single-stranded DNA binding|single-stranded RNA binding				0						ACAACATCCATGACGTGCTTG	0.622													29	55					0	0	1	0	0	
RFX2	5990	broad.mit.edu	37	19	6042053	6042053	+	Splice_Site	SNP	A	G	G	rs111454935		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:6042053A>G	uc002meb.2	-	4	529	c.260_splice	c.e4+1	p.I87_splice	RFX2_uc002mec.2_Splice_Site_p.I87_splice|RFX2_uc010xiy.1_Splice_Site_p.I42_splice	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						AGAAGCACGCACATGGCTCCA	0.602													26	95					0	0	1	0	0	
TRIP10	9322	broad.mit.edu	37	19	6746467	6746467	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:6746467T>C	uc002mfs.2	+	11	1223	c.1157T>C	c.(1156-1158)GTG>GCG	p.V386A	TRIP10_uc010dux.1_Missense_Mutation_p.V330A|TRIP10_uc002mfr.2_Missense_Mutation_p.V330A|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Missense_Mutation_p.V149A	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	386	Interaction with CDC42.|Interaction with PDE6G (By similarity).				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						TTGCAGACAGTGGTGACCGAG	0.542													9	22					0	0	1	0	0	
TIMM44	10469	broad.mit.edu	37	19	7999057	7999057	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:7999057T>C	uc002miz.2	-	5	462	c.460A>G	c.(460-462)AAG>GAG	p.K154E	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	154					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TTGGCCGTCTTGGCTGCTTCC	0.612													30	81					0	0	1	0	0	
MYO1F	4542	broad.mit.edu	37	19	8620591	8620591	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:8620591G>A	uc002mkg.2	-	2	207	c.93C>T	c.(91-93)GAC>GAT	p.D31D	MYO1F_uc002mkh.2_Silent_p.D31D|MYO1F_uc010xkf.1_Silent_p.D31D	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	31	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGGCAATGGCGTCTTCGGTGA	0.617													24	51					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9056201	9056201	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:9056201T>G	uc002mkp.2	-	3	31449	c.31245A>C	c.(31243-31245)CAA>CAC	p.Q10415H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10417	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGAAGGAACTTGATAAGCAC	0.478													65	91					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9087799	9087799	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:9087799G>T	uc002mkp.2	-	1	4220	c.4016C>A	c.(4015-4017)TCT>TAT	p.S1339Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1339	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGGGTGTAGAGACCTGAGC	0.512													10	44					1.76689e-08	1.87565e-08	1	1	0	
COL5A3	50509	broad.mit.edu	37	19	10078753	10078753	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:10078753A>G	uc002mmq.1	-	60	4403	c.4317T>C	c.(4315-4317)GGT>GGC	p.G1439G		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1439	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GACCAGGGGGACCCTAGGAAA	0.582													22	45					0	0	1	0	0	
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224725	10224725	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:10224725G>A	uc002mna.2	+	13	1696	c.1696G>A	c.(1696-1698)GCC>ACC	p.A566T	PPAN-P2RY11_uc010xla.1_3'UTR|P2RY11_uc002mnc.2_Missense_Mutation_p.A146T	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:Variant_position_missing_in_Q9NQ55_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			ACCCAAGCACGCCTGGGCCGT	0.682													20	39					0	0	1	0	0	
MRPL4	51073	broad.mit.edu	37	19	10368989	10368989	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:10368989C>T	uc002mnm.2	+	7	691	c.537C>T	c.(535-537)ACC>ACT	p.T179T	MRPL4_uc002mnn.2_Silent_p.T179T|MRPL4_uc002mno.2_Silent_p.T179T	NM_146387	NP_666499	Q9BYD3	RM04_HUMAN	mitochondrial ribosomal protein L4 isoform a	179					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1		Renal(1328;0.0112)	OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;1.99e-06)|all cancers(31;4.81e-06)	Lung(535;0.00705)		TGGCACTGACCGTCAAGCTGG	0.637													18	34					0	0	1	0	0	
ICAM5	7087	broad.mit.edu	37	19	10404979	10404979	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:10404979G>A	uc002mnu.3	+	8	2040	c.1975G>A	c.(1975-1977)GTC>ATC	p.V659I	ICAM5_uc002mnv.3_Missense_Mutation_p.V534I	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	659	Extracellular (Potential).|Ig-like C2-type 7.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			CAAAACAGTCGTCGTGAGCGC	0.657													79	163					0	0	1	0	0	
DOCK6	57572	broad.mit.edu	37	19	11323941	11323941	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:11323941G>A	uc002mqs.3	-	35	4443	c.4402C>T	c.(4402-4404)CGA>TGA	p.R1468*	DOCK6_uc010xlq.1_Nonsense_Mutation_p.R807*	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1468					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCACAGTGTCGTAGGAGCCTC	0.652													16	27					0	0	1	0	0	
ACP5	54	broad.mit.edu	37	19	11687262	11687262	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:11687262G>A	uc002msg.3	-	4	677	c.531C>T	c.(529-531)GAC>GAT	p.D177D	ACP5_uc002msh.3_Silent_p.D177D|ACP5_uc002msi.3_Silent_p.D177D|ACP5_uc002msj.3_Silent_p.D177D	NM_001611	NP_001602	P13686	PPA5_HUMAN	acid phosphatase 5, tartrate resistant	177				DVKL -> LT (in Ref. 1; AAA76849).	water-soluble vitamin metabolic process	cytosol|integral to membrane|lysosome	acid phosphatase activity|ferric iron binding|ferrous iron binding			central_nervous_system(1)	1						CCAGCTTCACGTCTCGGGGCC	0.597													19	43					0	0	1	0	0	
ZNF439	90594	broad.mit.edu	37	19	11979027	11979027	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:11979027G>A	uc002mss.2	+	3	1271	c.1143G>A	c.(1141-1143)CCG>CCA	p.P381P	ZNF439_uc002msr.2_Silent_p.P245P	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GAGAGAAACCGTATAAATGCA	0.408													29	25					0	0	1	0	0	
ZNF791	163049	broad.mit.edu	37	19	12739129	12739129	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:12739129C>T	uc002mua.2	+	4	948	c.786C>T	c.(784-786)CAC>CAT	p.H262H	ZNF791_uc010xml.1_Silent_p.H230H|ZNF791_uc010dyu.1_Silent_p.H153H|ZNF791_uc010xmm.1_Silent_p.H153H	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	262	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTCTAACACACATGATAACAC	0.393													20	35					0	0	1	0	0	
TNPO2	30000	broad.mit.edu	37	19	12813689	12813689	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:12813689C>T	uc002muo.2	-	20	2438	c.2253G>A	c.(2251-2253)CTG>CTA	p.L751L	TNPO2_uc002mup.2_Silent_p.L843L|TNPO2_uc002muq.2_Silent_p.L751L|TNPO2_uc002mur.2_Silent_p.L751L	NM_001136196	NP_001129668	O14787	TNPO2_HUMAN	transportin 2 (importin 3, karyopherin beta 2b)	751	HEAT 13.				intracellular protein transport	cytoplasm|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			ovary(1)	1						TGATTTCCACCAGGTTGTTGA	0.632													31	157					0	0	1	0	0	
CYP4F11	57834	broad.mit.edu	37	19	16024639	16024639	+	Missense_Mutation	SNP	G	A	A	rs151267237		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:16024639G>A	uc002nbu.2	-	13	1514	c.1478C>T	c.(1477-1479)CCG>CTG	p.P493L	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Missense_Mutation_p.P493L	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	493					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						AGTGTGGGTCGGCAGGATGCG	0.627													3	36					0	0	1	0	0	
C19orf44	84167	broad.mit.edu	37	19	16613907	16613907	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:16613907C>A	uc002neh.1	+	3	864	c.791C>A	c.(790-792)CCC>CAC	p.P264H	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Missense_Mutation_p.P264H|C19orf44_uc002neg.2_Missense_Mutation_p.P264H|C19orf44_uc010eai.1_RNA	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167	264											0						TTTACTGTACCCAGCGTGGAA	0.418													19	61					2.35188e-11	2.55597e-11	1	1	0	
SIN3B	23309	broad.mit.edu	37	19	16962273	16962273	+	Silent	SNP	C	T	T	rs149541599		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:16962273C>T	uc002ney.1	+	6	791	c.777C>T	c.(775-777)CAC>CAT	p.H259H	SIN3B_uc002new.2_Silent_p.H259H|SIN3B_uc002nex.2_Silent_p.H191H|SIN3B_uc002nez.1_Silent_p.H259H	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	259					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						AGAACGAGCACGACAAGACCC	0.647													30	74					0	0	1	0	0	
ANO8	57719	broad.mit.edu	37	19	17441906	17441906	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:17441906C>A	uc002ngf.2	-	7	981	c.822G>T	c.(820-822)GAG>GAT	p.E274D	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	274	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						CCTGATCAGCCTCTGTGAATG	0.547													26	75					1.42536e-11	1.55065e-11	1	1	0	
SLC27A1	376497	broad.mit.edu	37	19	17611178	17611178	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:17611178G>A	uc002ngu.1	+	8	1348	c.1298G>A	c.(1297-1299)CGG>CAG	p.R433Q	SLC27A1_uc010xpp.1_Missense_Mutation_p.R254Q|SLC27A1_uc002ngv.1_Missense_Mutation_p.R35Q	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	433	Sufficient for oligomerization (By similarity).|Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						GAGCTGCTGCGGGATGCCCAG	0.682													15	45					0	0	1	0	0	
TMEM161A	54929	broad.mit.edu	37	19	19245695	19245695	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:19245695G>A	uc002nlg.2	-	2	35	c.5C>T	c.(4-6)GCG>GTG	p.A2V	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Missense_Mutation_p.A2V|TMEM161A_uc002nli.2_Missense_Mutation_p.A2V|TMEM161A_uc002nlj.2_Intron	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	2					cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			TCCGAGGACCGCCTGGGGGGA	0.627													5	5					0	0	1	0	0	
ZNF737	100129842	broad.mit.edu	37	19	20727464	20727464	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:20727464G>A	uc002npa.2	-	4	1725	c.1545C>T	c.(1543-1545)GGC>GGT	p.G515G		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	515					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TAAAGCCTTTGCCACATTCTT	0.403													3	8					0	0	1	0	0	
ZNF100	163227	broad.mit.edu	37	19	21948556	21948556	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:21948556C>A	uc002nqi.2	-	2	235	c.36G>T	c.(34-36)AAG>AAT	p.K12N		NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACTTGCTCCCTTGAGAGGAC	0.478													25	69					6.12954e-19	6.88183e-19	1	1	0	
ZNF99	7652	broad.mit.edu	37	19	22940057	22940057	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:22940057G>T	uc010xrh.1	-	6	2274	c.2274C>A	c.(2272-2274)TCC>TCA	p.S758S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAAGGGTTGAGGAATTGTTAA	0.353													15	40					9.16793e-09	9.75193e-09	1	1	0	
TSHZ3	57616	broad.mit.edu	37	19	31769223	31769223	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:31769223G>A	uc002nsy.3	-	2	1541	c.1476C>T	c.(1474-1476)GGC>GGT	p.G492G		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	492					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CCTCTTCTTCGCCAGGCTTGT	0.468													70	128					0	0	1	0	0	
PDCD5	9141	broad.mit.edu	37	19	33076813	33076813	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:33076813G>T	uc002ntm.2	+	4	322	c.258G>T	c.(256-258)AAG>AAT	p.K86N	PDCD5_uc002ntl.2_Missense_Mutation_p.K86N|PDCD5_uc010ede.2_Intron	NM_004708	NP_004699	O14737	PDCD5_HUMAN	programmed cell death 5	86					apoptosis|induction of apoptosis	cytoplasm|nucleus	DNA binding			ovary(1)|lung(1)	2	Esophageal squamous(110;0.137)					TAAGTGAGAAGGTAAGCTTAG	0.373													15	45					2.32078e-09	2.49129e-09	1	1	0	
UBA2	10054	broad.mit.edu	37	19	34922769	34922769	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:34922769G>A	uc002nvk.2	+	3	296	c.226G>A	c.(226-228)GCC>ACC	p.A76T	UBA2_uc010xrx.1_Intron|UBA2_uc002nvl.2_5'UTR	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	76					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			TTTCCAGGTTGCCAAGGAAAG	0.368													36	72					0	0	1	0	0	
MLL4	9757	broad.mit.edu	37	19	36215971	36215971	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:36215971G>A	uc010eei.2	+	11	3511	c.3511G>A	c.(3511-3513)GTC>ATC	p.V1171I		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1171					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGTGCACCGCGTCCGTGTGGA	0.567													5	49					0	0	1	0	0	
MLL4	9757	broad.mit.edu	37	19	36218423	36218423	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:36218423G>A	uc010eei.2	+	17	4202	c.4202G>A	c.(4201-4203)TGG>TAG	p.W1401*		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1401					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGCCCCGCTGGCGAGAGGCC	0.672													36	75					0	0	1	0	0	
MLL4	9757	broad.mit.edu	37	19	36228995	36228995	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:36228995A>G	uc010eei.2	+	37	7775	c.7775A>G	c.(7774-7776)AAG>AGG	p.K2592R		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2592	SET.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGTTCTGTAAGCGCAACATC	0.587													8	28					0	0	1	0	0	
LRFN3	79414	broad.mit.edu	37	19	36430697	36430697	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:36430697G>A	uc002oco.2	+	2	822	c.370G>A	c.(370-372)GAG>AAG	p.E124K		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	124	LRR 3.|Extracellular (Potential).				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CTCACTGGGCGAGGGCCAGCT	0.706													22	27					0	0	1	0	0	
HKR1	284459	broad.mit.edu	37	19	37854267	37854267	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:37854267C>T	uc002ogb.2	+	6	1839	c.1570C>T	c.(1570-1572)CCA>TCA	p.P524S	HKR1_uc002ofx.2_Missense_Mutation_p.P240S|HKR1_uc002ofy.2_Missense_Mutation_p.P240S|HKR1_uc002oga.2_Missense_Mutation_p.P506S|HKR1_uc010xto.1_Missense_Mutation_p.P506S|HKR1_uc002ogc.2_Missense_Mutation_p.P505S|HKR1_uc010xtp.1_Missense_Mutation_p.P463S|HKR1_uc002ogd.2_Missense_Mutation_p.P463S	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	524					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGGGGAGAAGCCATTTGTATG	0.517													26	53					0	0	1	0	0	
SIPA1L3	23094	broad.mit.edu	37	19	38573387	38573387	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:38573387C>T	uc002ohk.2	+	3	1691	c.1182C>T	c.(1180-1182)GGC>GGT	p.G394G		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	394					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCCTCGGAGGCCTGGACCCGG	0.682													27	30					0	0	1	0	0	
CATSPERG	57828	broad.mit.edu	37	19	38850136	38850136	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:38850136T>G	uc002oih.3	+	14	1610	c.1523T>G	c.(1522-1524)CTG>CGG	p.L508R	CATSPERG_uc002oig.3_Missense_Mutation_p.L468R|CATSPERG_uc002oif.3_Missense_Mutation_p.L148R|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	508	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						TTCATCTACCTGGCAGACTTC	0.572													7	25					0	0	1	0	0	
RYR1	6261	broad.mit.edu	37	19	38948905	38948905	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:38948905G>A	uc002oit.2	+	18	2270	c.2140G>A	c.(2140-2142)GGC>AGC	p.G714S	RYR1_uc002oiu.2_Missense_Mutation_p.G714S	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	714	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTATTCCTACGGCTTTGATGG	0.637													49	95					0	0	1	0	0	
ACTN4	81	broad.mit.edu	37	19	39219655	39219655	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:39219655G>A	uc002oja.1	+	20	2497	c.2438G>A	c.(2437-2439)CGC>CAC	p.R813H	ACTN4_uc002ojb.1_Missense_Mutation_p.R135H	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	813	EF-hand 2.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GAGTTCAACCGCATCATGAGC	0.637													32	73					0	0	1	0	0	
PRX	57716	broad.mit.edu	37	19	40899951	40899951	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:40899951C>T	uc002onr.2	-	7	4577	c.4308G>A	c.(4306-4308)CGG>CGA	p.R1436R	PRX_uc002onq.2_Silent_p.R1297R|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1436					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CGCTGGGCAGCCGCACCCGCA	0.657													25	60					0	0	1	0	0	
LTBP4	8425	broad.mit.edu	37	19	41128322	41128322	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:41128322G>A	uc002ooh.1	+	27	3435	c.3435G>A	c.(3433-3435)TCG>TCA	p.S1145S	LTBP4_uc002oog.1_Silent_p.S1108S|LTBP4_uc002ooi.1_Silent_p.S1078S|LTBP4_uc002ooj.1_Silent_p.S18S|LTBP4_uc002ook.1_Silent_p.S279S|LTBP4_uc002ool.1_Silent_p.S157S|LTBP4_uc010xvp.1_Intron	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1145	Pro-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TCCCAGGCTCGCAGCCCCAGG	0.677													4	9					0	0	1	0	0	
AXL	558	broad.mit.edu	37	19	41749584	41749584	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:41749584C>A	uc010ehj.2	+	12	1699	c.1509C>A	c.(1507-1509)TCC>TCA	p.S503S	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.S503S|AXL_uc010ehk.2_Silent_p.S494S	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	503	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						TGCGCAAGTCCTACAGTCGTC	0.562													29	74					1.61788e-16	1.80107e-16	1	1	0	
CCDC97	90324	broad.mit.edu	37	19	41828591	41828591	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:41828591G>A	uc002oqg.2	+	5	1125	c.1003G>A	c.(1003-1005)GCG>ACG	p.A335T	CYP2F1_uc010xvw.1_Intron	NM_052848	NP_443080	Q96F63	CCD97_HUMAN	coiled-coil domain containing 97	335											0						ACCTGAGGATGCGCCCAGCCC	0.617													20	57					0	0	1	0	0	
ATP1A3	478	broad.mit.edu	37	19	42492119	42492119	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:42492119G>A	uc002osg.2	-	4	480	c.326C>T	c.(325-327)GCG>GTG	p.A109V	ATP1A3_uc010xwf.1_Missense_Mutation_p.A120V|ATP1A3_uc010xwg.1_Missense_Mutation_p.A79V|ATP1A3_uc010xwh.1_Missense_Mutation_p.A122V|ATP1A3_uc002osh.2_Missense_Mutation_p.A109V	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	109	Extracellular (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CTCGGTGCCCGCCTGGATACC	0.607													48	71					0	0	1	0	0	
MEGF8	1954	broad.mit.edu	37	19	42853697	42853697	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:42853697G>T	uc002otl.3	+	13	2779	c.2144G>T	c.(2143-2145)CGG>CTG	p.R715L	MEGF8_uc002otm.3_Missense_Mutation_p.R323L	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	782	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				GAGACGCGGCGGCTGCAGCGC	0.652													19	25					2.37509e-13	2.60814e-13	1	1	0	
PSG7	5676	broad.mit.edu	37	19	43430061	43430061	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:43430061A>G	uc002ovl.3	-	6	1209	c.1107T>C	c.(1105-1107)AAT>AAC	p.N369N	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Silent_p.N282N|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Silent_p.N95N|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.N282N|PSG7_uc010xwl.1_Silent_p.N247N	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	369	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GAAACTTCCCATTAATTGTCC	0.453													70	187					0	0	1	0	0	
ZNF221	7638	broad.mit.edu	37	19	44466912	44466912	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:44466912G>A	uc002oxx.2	+	3	362	c.34G>A	c.(34-36)GGA>AGA	p.G12R	ZNF221_uc010ejb.1_Missense_Mutation_p.G12R|ZNF221_uc010xws.1_Missense_Mutation_p.G12R	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				GCTTCATTCAGGACTCTGCAA	0.423													14	33					0	0	1	0	0	
APOE	348	broad.mit.edu	37	19	45412438	45412438	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:45412438C>T	uc002pab.2	+	4	968	c.885C>T	c.(883-885)GCC>GCT	p.A295A		NM_000041	NP_000032	P02649	APOE_HUMAN	apolipoprotein E precursor	295					anti-apoptosis|Cdc42 protein signal transduction|cell death|cGMP-mediated signaling|cholesterol efflux|cholesterol homeostasis|chylomicron remnant clearance|cytoskeleton organization|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|induction of apoptosis|intracellular transport|negative regulation of blood vessel endothelial cell migration|negative regulation of cholesterol biosynthetic process|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of platelet activation|nitric oxide mediated signal transduction|phospholipid efflux|positive regulation of cGMP biosynthetic process|positive regulation of cholesterol efflux|positive regulation of cholesterol esterification|positive regulation of low-density lipoprotein particle receptor catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of nitric-oxide synthase activity|receptor-mediated endocytosis|regulation of axon extension|regulation of neuronal synaptic plasticity|response to reactive oxygen species|reverse cholesterol transport|synaptic transmission, cholinergic|triglyceride metabolic process|very-low-density lipoprotein particle clearance|very-low-density lipoprotein particle remodeling	chylomicron|dendrite|high-density lipoprotein particle|intermediate-density lipoprotein particle|low-density lipoprotein particle|neuronal cell body|very-low-density lipoprotein particle	antioxidant activity|beta-amyloid binding|heparin binding|low-density lipoprotein particle receptor binding|metal chelating activity|phosphatidylcholine-sterol O-acyltransferase activator activity|phospholipid binding|protein heterodimerization activity|protein homodimerization activity|tau protein binding|very-low-density lipoprotein particle receptor binding				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|Epithelial(262;0.174)	Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GCCAGTGGGCCGGGCTGGTGG	0.692													10	23					0	0	1	0	0	
EHD2	30846	broad.mit.edu	37	19	48229320	48229320	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:48229320G>A	uc002phj.3	+	4	1004	c.754G>A	c.(754-756)GTC>ATC	p.V252I	EHD2_uc010xyu.1_Missense_Mutation_p.V116I|EHD2_uc010xyv.1_5'Flank	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	252					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		GGTGCTGCGCGTCTACATCGG	0.677													4	6					0	0	1	0	0	
RPL18	6141	broad.mit.edu	37	19	49118647	49118647	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:49118647G>A	uc002pjq.1	-	7	582	c.549C>T	c.(547-549)AGC>AGT	p.S183S	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Silent_p.S131S	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	183					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		TGTAGCCTCGGCTGGCCCGTC	0.552													49	132					0	0	1	0	0	
BCAT2	587	broad.mit.edu	37	19	49299906	49299906	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:49299906C>T	uc002pkr.2	-	9	1031	c.994G>A	c.(994-996)GTG>ATG	p.V332M	BCAT2_uc002pkp.2_Missense_Mutation_p.V292M|BCAT2_uc002pkq.3_Missense_Mutation_p.V292M|BCAT2_uc002pks.2_Missense_Mutation_p.V292M|BCAT2_uc002pkt.2_Missense_Mutation_p.V240M|BCAT2_uc010emh.1_Missense_Mutation_p.V332M|BCAT2_uc010emi.1_Missense_Mutation_p.V240M	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	332						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	ACTTCCCGCACGCGGCCCTCC	0.652													33	82					0	0	1	0	0	
GYS1	2997	broad.mit.edu	37	19	49494662	49494662	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:49494662C>A	uc002plp.2	-	2	438	c.197G>T	c.(196-198)GGG>GTG	p.G66V	GYS1_uc010xzy.1_Intron|GYS1_uc010emm.2_Missense_Mutation_p.G66V|GYS1_uc010xzz.1_Intron|GYS1_uc010yaa.1_Intron|RUVBL2_uc002plq.1_5'Flank|RUVBL2_uc010yab.1_5'Flank|RUVBL2_uc002plr.1_5'Flank|RUVBL2_uc002pls.1_5'Flank|RUVBL2_uc010emn.1_5'Flank	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	66					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		CGTGTACGGCCCCACCAGGAA	0.642													88	157					4.869e-31	5.55552e-31	1	1	0	
PRR12	57479	broad.mit.edu	37	19	50099705	50099705	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:50099705C>T	uc002poo.3	+	4	2113	c.2113C>T	c.(2113-2115)CGC>TGC	p.R705C		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GAGTGTCATCCGCACCAGTGC	0.662													5	13					0	0	1	0	0	
PTOV1	53635	broad.mit.edu	37	19	50357780	50357780	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:50357780G>A	uc002pqf.1	+	2	459	c.289G>A	c.(289-291)GGC>AGC	p.G97S	uc002ppy.3_5'Flank|PTOV1_uc010ybf.1_Missense_Mutation_p.G65S|PTOV1_uc002ppz.3_RNA|PTOV1_uc002pqb.3_Missense_Mutation_p.G65S|PTOV1_uc002pqa.2_RNA|PTOV1_uc002pqc.1_RNA|PTOV1_uc002pqd.2_RNA|PTOV1_uc002pqe.1_RNA	NM_017432	NP_059128	Q86YD1	PTOV1_HUMAN	prostate tumor overexpressed 1	97					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|plasma membrane					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		GGCTTGGAGCGGCGTCCTCGA	0.687													40	62					0	0	1	0	0	
FPR1	2357	broad.mit.edu	37	19	52249510	52249510	+	Silent	SNP	G	A	A	rs148898220		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:52249510G>A	uc002pxq.2	-	2	833	c.738C>T	c.(736-738)GTC>GTT	p.V246V		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	246	Helical; Name=6; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	AGGCTGCTGCGACAAAGGAGA	0.493													21	36					0	0	1	0	0	
PRKCG	5582	broad.mit.edu	37	19	54395893	54395893	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:54395893G>T	uc002qcq.1	+	7	1099	c.817G>T	c.(817-819)GGC>TGC	p.G273C	PRKCG_uc010eqz.1_Missense_Mutation_p.G273C|PRKCG_uc010yef.1_Missense_Mutation_p.G273C|PRKCG_uc010yeg.1_Missense_Mutation_p.G273C|PRKCG_uc010yeh.1_Missense_Mutation_p.G160C	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	273					activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GCCCGTGGATGGCTGGTGAGG	0.637													11	24					3.07112e-06	3.20517e-06	1	1	0	
CACNG7	59284	broad.mit.edu	37	19	54417817	54417817	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:54417817C>T	uc002qcr.1	+	2	275	c.260C>T	c.(259-261)ACG>ATG	p.T87M	CACNG7_uc010era.1_Missense_Mutation_p.T87M	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	87					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		AATTTGGTGACGGAAAACACG	0.552													11	39					0	0	1	0	0	
LILRA2	11027	broad.mit.edu	37	19	55087402	55087402	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:55087402G>T	uc002qgg.3	+	6	1170	c.1081G>T	c.(1081-1083)GGC>TGC	p.G361C	LILRA2_uc010ern.2_Missense_Mutation_p.G361C|LILRA2_uc002qgf.2_Missense_Mutation_p.G361C|LILRA2_uc010yfe.1_Missense_Mutation_p.G361C|LILRA2_uc010yff.1_Missense_Mutation_p.G349C|LILRA2_uc010ero.2_Missense_Mutation_p.G349C|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	361	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GGAGGGGGCAGGCCATCCCCC	0.612													25	50					1.1804e-14	1.30713e-14	1	1	0	
LILRB1	10859	broad.mit.edu	37	19	55144041	55144041	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:55144041G>A	uc002qgj.2	+	7	1128	c.788G>A	c.(787-789)CGT>CAT	p.R263H	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.R263H|LILRB1_uc002qgk.2_Missense_Mutation_p.R263H|LILRB1_uc002qgm.2_Missense_Mutation_p.R263H|LILRB1_uc010erq.2_Missense_Mutation_p.R263H|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	263	Ig-like C2-type 3.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GACGGGGAACGTGACTTCCTT	0.617										HNSCC(37;0.09)			6	110					0	0	1	0	0	
KIR2DS4	3809	broad.mit.edu	37	19	55349279	55349279	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:55349279T>A	uc002qhm.1	+	3	365	c.319T>A	c.(319-321)TCC>ACC	p.S107T	KIR2DS4_uc010yfj.1_Missense_Mutation_p.S100T|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.S107T|KIR2DS4_uc002qhn.1_Missense_Mutation_p.S54T	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	107	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		TGTTCCTCACTCCCCCTATCA	0.512													10	173					0	0	1	0	0	
NLRP13	126204	broad.mit.edu	37	19	56413493	56413493	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:56413493G>A	uc010ygg.1	-	9	2722	c.2697C>T	c.(2695-2697)CAC>CAT	p.H899H		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	899	LRR 4.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCAGATTCAGGTGTGTCAGGC	0.557													22	38					0	0	1	0	0	
ZIM2	23619	broad.mit.edu	37	19	57286450	57286450	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:57286450G>A	uc002qnr.2	-	11	1572	c.1190C>T	c.(1189-1191)GCG>GTG	p.A397V	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.A193V|ZIM2_uc010ygr.1_Missense_Mutation_p.A193V|ZIM2_uc002qnq.2_Missense_Mutation_p.A397V|ZIM2_uc010etp.2_Missense_Mutation_p.A397V|ZIM2_uc010ygs.1_Missense_Mutation_p.A397V	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	397					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		ACAGAGATTCGCACACTGGAC	0.458													20	39					0	0	1	0	0	
ZNF548	147694	broad.mit.edu	37	19	57910087	57910087	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:57910087C>A	uc002qom.2	+	3	682	c.432C>A	c.(430-432)CAC>CAA	p.H144Q	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.H147Q	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGAAGAACCACAGAGTTCACA	0.488													22	37					8.04996e-18	8.98997e-18	1	1	0	
ZSCAN4	201516	broad.mit.edu	37	19	58189949	58189949	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:58189949C>T	uc002qpu.2	+	5	1675	c.978C>T	c.(976-978)CAC>CAT	p.H326H		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	326	C2H2-type 1.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATCTCTGTCACTTATTAGCTC	0.438													16	56					0	0	1	0	0	
ZNF551	90233	broad.mit.edu	37	19	58198694	58198694	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:58198694A>G	uc002qpw.3	+	3	1226	c.1003A>G	c.(1003-1005)ATT>GTT	p.I335V	ZNF551_uc002qpv.3_Missense_Mutation_p.I278V|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	351	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		ATCTAACCTCATTGAACACCA	0.453													30	43					0	0	1	0	0	
ZNF552	79818	broad.mit.edu	37	19	58319557	58319557	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:58319557T>G	uc002qqg.2	-	3	1245	c.1075A>C	c.(1075-1077)AAA>CAA	p.K359Q	ZNF587_uc002qqb.2_Intron|ZNF552_uc010yhg.1_Missense_Mutation_p.K355Q	NM_024762	NP_079038	Q9H707	ZN552_HUMAN	zinc finger protein 552	359	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		GCAAAAGATTTCCCACATTCA	0.433													27	45					0	0	1	0	0	
KIDINS220	57498	broad.mit.edu	37	2	8919071	8919071	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:8919071C>T	uc002qzc.2	-	19	2751	c.2569G>A	c.(2569-2571)GTA>ATA	p.V857I	KIDINS220_uc010yiv.1_Missense_Mutation_p.V623I|KIDINS220_uc002qzd.2_Missense_Mutation_p.V815I|KIDINS220_uc010yiw.1_Missense_Mutation_p.V858I	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	857	KAP NTPase.|Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GCTGAAGTTACGAGAAATTTT	0.393													32	60					0	0	1	0	0	
ASXL2	55252	broad.mit.edu	37	2	25991624	25991624	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:25991624T>C	uc002rgs.2	-	6	839	c.618A>G	c.(616-618)GTA>GTG	p.V206V	ASXL2_uc002rgt.1_5'UTR	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	206	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTTTGGCAGGTACAGAGTCAC	0.363													45	81					0	0	1	0	0	
GTF3C2	2976	broad.mit.edu	37	2	27560874	27560874	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:27560874T>C	uc002rjv.1	-	6	1232	c.869A>G	c.(868-870)CAC>CGC	p.H290R	GTF3C2_uc010eyy.1_5'Flank|GTF3C2_uc002rju.1_Missense_Mutation_p.H301R|GTF3C2_uc002rjw.1_Missense_Mutation_p.H290R|GTF3C2_uc010eyz.1_Missense_Mutation_p.H290R	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	290						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCTCGGCAGTGTGGTTTCTG	0.458													82	136					0	0	1	0	0	
EIF2B4	8890	broad.mit.edu	37	2	27591960	27591960	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:27591960C>T	uc002rkb.2	-	4	474	c.331G>A	c.(331-333)GAG>AAG	p.E111K	EIF2B4_uc002rjz.2_Missense_Mutation_p.E131K|EIF2B4_uc002rka.2_Missense_Mutation_p.E96K|EIF2B4_uc002rkc.2_Missense_Mutation_p.E110K|EIF2B4_uc002rkd.2_5'UTR|EIF2B4_uc002rke.2_Missense_Mutation_p.E80K|EIF2B4_uc002rkf.1_Missense_Mutation_p.E80K|SNX17_uc010ylj.1_5'Flank|SNX17_uc002rkg.1_5'Flank|SNX17_uc010ylk.1_5'Flank|SNX17_uc010eza.1_5'Flank|SNX17_uc002rki.1_5'Flank|SNX17_uc002rkh.1_5'Flank|SNX17_uc010yll.1_5'Flank|SNX17_uc010ylm.1_5'Flank|SNX17_uc010yln.1_5'Flank|SNX17_uc010ylo.1_5'Flank|SNX17_uc010ylp.1_5'Flank|SNX17_uc010ylq.1_5'Flank	NM_001034116	NP_001029288	Q9UI10	EI2BD_HUMAN	eukaryotic translation initiation factor 2B,	111					myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	translation initiation factor activity|translation initiation factor binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGGCCCGCTCGGCCTCCTGC	0.607													41	90					0	0	1	0	0	
HNRPLL	92906	broad.mit.edu	37	2	38818748	38818748	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:38818748C>T	uc002rqw.2	-	2	642	c.232G>A	c.(232-234)GTC>ATC	p.V78I	HNRPLL_uc002rqx.2_Missense_Mutation_p.V73I	NM_138394	NP_612403	Q8WVV9	HNRLL_HUMAN	heterogeneous nuclear ribonucleoprotein L-like	78	RRM 1.				mRNA processing|positive regulation of RNA splicing	nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding			skin(1)	1		all_hematologic(82;0.248)				CGAACATGGACGACGGGTGAA	0.383													28	68					0	0	1	0	0	
DHX57	90957	broad.mit.edu	37	2	39088771	39088771	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:39088771C>A	uc002rrf.2	-	5	880	c.781G>T	c.(781-783)GAA>TAA	p.E261*	DHX57_uc002rre.2_5'UTR|DHX57_uc002rrg.2_Nonsense_Mutation_p.E261*	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	261							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				ATAAATTTTTCTCCACAGATG	0.428													4	75					0.150653	0.15094	1	1	0	
SLC3A1	6519	broad.mit.edu	37	2	44547361	44547361	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:44547361G>A	uc002ruc.3	+	10	1719	c.1641G>A	c.(1639-1641)TCG>TCA	p.S547S	PREPL_uc002ruf.2_3'UTR|PREPL_uc002rug.2_3'UTR|PREPL_uc002ruh.2_3'UTR|PREPL_uc010fax.2_3'UTR|PREPL_uc002rui.3_3'UTR|PREPL_uc002ruj.1_3'UTR|PREPL_uc002ruk.1_3'UTR|SLC3A1_uc002rud.3_Silent_p.S269S|SLC3A1_uc002rue.3_Silent_p.S167S	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	547	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	AGCCCAGATCGGCTTTGAAGT	0.348													16	38					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	51254651	51254651	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:51254651T>C	uc010fbq.2	-	2	2238	c.761A>G	c.(760-762)GAC>GGC	p.D254G	NRXN1_uc002rxe.3_Missense_Mutation_p.D254G|NRXN1_uc002rxd.1_Missense_Mutation_p.D254G	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTGGCTGCAGTCCTTGCCGCG	0.721													7	19					0	0	1	0	0	
CHAC2	494143	broad.mit.edu	37	2	53999079	53999079	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:53999079G>T	uc002rxk.1	+	2	266	c.171G>T	c.(169-171)GCG>GCT	p.A57A	ASB3_uc002rxg.1_Intron|ASB3_uc002rxh.1_Intron|ASB3_uc002rxi.3_Intron|ASB3_uc010yoo.1_Intron	NM_001008708	NP_001008708	Q8WUX2	CHAC2_HUMAN	ChaC, cation transport regulator-like 2	57											0			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AAGATCCTGCGGTATGGtata	0.259													16	66					3.45872e-05	3.57423e-05	1	1	0	
ERLEC1	27248	broad.mit.edu	37	2	54023109	54023109	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:54023109C>A	uc002rxl.2	+	3	587	c.307C>A	c.(307-309)CTT>ATT	p.L103I	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Missense_Mutation_p.L103I|ERLEC1_uc002rxn.2_Missense_Mutation_p.L103I	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	103					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						TCCAAGAGAGCTTTTGGAGCC	0.343													22	24					3.10358e-05	3.21039e-05	1	1	0	
CCDC88A	55704	broad.mit.edu	37	2	55561433	55561433	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:55561433G>A	uc002ryv.2	-	15	3366	c.2524C>T	c.(2524-2526)CGA>TGA	p.R842*	CCDC88A_uc010yoz.1_Nonsense_Mutation_p.R842*|CCDC88A_uc010ypa.1_Nonsense_Mutation_p.R842*|CCDC88A_uc010ypb.1_Nonsense_Mutation_p.R744*|CCDC88A_uc002ryu.2_Nonsense_Mutation_p.R125*|CCDC88A_uc002ryw.2_Nonsense_Mutation_p.R125*	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	842	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						GCTTGTTGTCGGAGTCTCTTA	0.318													22	43					0	0	1	0	0	
SMEK2	57223	broad.mit.edu	37	2	55791531	55791531	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:55791531T>G	uc002rzc.2	-	15	2553	c.2178A>C	c.(2176-2178)AAA>AAC	p.K726N	SMEK2_uc002rzb.2_Missense_Mutation_p.K641N|SMEK2_uc002rzd.2_Missense_Mutation_p.K694N|SMEK2_uc002ryz.2_Missense_Mutation_p.K153N|SMEK2_uc002rza.2_Missense_Mutation_p.K510N	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	726						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CCACAACTGCTTTTCCTTCCT	0.358													17	29					0	0	1	0	0	
NAGK	55577	broad.mit.edu	37	2	71299880	71299880	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:71299880A>G	uc002shp.3	+	5	871	c.465A>G	c.(463-465)TCA>TCG	p.S155S	NAGK_uc010fea.2_RNA|NAGK_uc002shq.3_Silent_p.S6S|NAGK_uc002shr.2_Silent_p.S104S	NM_017567	NP_060037	Q9UJ70	NAGK_HUMAN	N-Acetylglucosamine kinase	155					N-acetylglucosamine metabolic process|N-acetylmannosamine metabolic process		ATP binding|N-acetylglucosamine kinase activity|protein binding				0					N-Acetyl-D-glucosamine(DB00141)	ATGAGGGTTCAGGTGAGCTCA	0.592													9	11					0	0	1	0	0	
CYP26B1	56603	broad.mit.edu	37	2	72360353	72360353	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:72360353G>A	uc002sih.1	-	5	945	c.945C>T	c.(943-945)CAC>CAT	p.H315H	CYP26B1_uc010yra.1_Silent_p.H298H|CYP26B1_uc010yrb.1_Silent_p.H240H	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	315					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						GCACAGTGGGGTGCTTCAGCA	0.657													10	20					0	0	1	0	0	
TET3	200424	broad.mit.edu	37	2	74317097	74317097	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:74317097A>G	uc002skb.3	+	5	2557	c.2557A>G	c.(2557-2559)ATG>GTG	p.M853V		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	853							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTCCTGGAGCATGTACTTCAA	0.592													77	128					0	0	1	0	0	
MOGS	7841	broad.mit.edu	37	2	74689670	74689670	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:74689670C>A	uc010ffj.2	-	4	1409	c.1246G>T	c.(1246-1248)GGG>TGG	p.G416W	MOGS_uc010ffh.2_Missense_Mutation_p.G141W|MOGS_uc010yrt.1_Missense_Mutation_p.G297W|MOGS_uc010ffi.2_Missense_Mutation_p.G310W	NM_006302	NP_006293	Q13724	MOGS_HUMAN	mannosyl-oligosaccharide glucosidase isoform 1	416	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|membrane fraction	mannosyl-oligosaccharide glucosidase activity				0						CCTTCCACCCCGATGTCTGGC	0.592													58	112					2.47907e-22	2.80428e-22	1	1	0	
LBX2	85474	broad.mit.edu	37	2	74725093	74725093	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:74725093C>T	uc002slv.3	-	2	563	c.558G>A	c.(556-558)CGG>CGA	p.R186R	LBX2_uc002slw.2_Silent_p.R182R	NM_001009812	NP_001009812	Q6XYB7	LBX2_HUMAN	ladybird homeobox 2	186						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ACAGGTGGGGCCGGGAGTCAG	0.677													13	25					0	0	1	0	0	
GGT8P	645367	broad.mit.edu	37	2	91968670	91968670	+	RNA	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:91968670C>T	uc010fho.1	+	2		c.1001C>T				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						GCAGGGCAGGCACAGCCCAAG	0.622													14	27					0	0	1	0	0	
NEURL3	93082	broad.mit.edu	37	2	97166219	97166219	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:97166219G>A	uc010yuo.1	-	2	542	c.471C>T	c.(469-471)GCC>GCT	p.A157A	NEURL3_uc010fhx.2_RNA|NEURL3_uc002swc.2_RNA|NEURL3_uc010yup.1_Silent_p.A157A					SubName: Full=cDNA FLJ54814;												0						CGTCCATCACGGCCCAGAGCG	0.711													8	12					0	0	1	0	0	
CNNM3	26505	broad.mit.edu	37	2	97494763	97494763	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:97494763C>A	uc002swy.2	+	7	1975	c.1951C>A	c.(1951-1953)CTG>ATG	p.L651M	CNNM3_uc002swz.2_Missense_Mutation_p.L603M	NM_017623	NP_060093	Q8NE01	CNNM3_HUMAN	cyclin M3 isoform 1	651					ion transport	integral to membrane|plasma membrane	protein binding			ovary(1)	1						CAATGCACTCCTGGCTACCCG	0.577													13	44					0.000151284	0.000155573	1	1	0	
TBC1D8	11138	broad.mit.edu	37	2	101656773	101656773	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:101656773G>A	uc010fiv.2	-	6	1033	c.902C>T	c.(901-903)GCG>GTG	p.A301V	TBC1D8_uc010yvw.1_Missense_Mutation_p.A316V|TBC1D8_uc002tau.3_Missense_Mutation_p.A58V	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	301	GRAM 2.				blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						GTCCACAACCGCGTGCAGCTT	0.577													14	23					0	0	1	0	0	
IL1R1	3554	broad.mit.edu	37	2	102781301	102781301	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:102781301C>T	uc002tbq.2	+	4	447	c.129C>T	c.(127-129)CCC>CCT	p.P43P	IL1R1_uc010fix.2_Silent_p.P43P|IL1R1_uc002tbp.2_Silent_p.P43P|IL1R1_uc002tbr.2_Silent_p.P43P	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	43	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	ATGTTCGTCCCTGTCCTCTTA	0.373													20	50					0	0	1	0	0	
IL1RL1	9173	broad.mit.edu	37	2	102955439	102955439	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:102955439A>G	uc002tbu.1	+	3	475	c.204A>G	c.(202-204)TCA>TCG	p.S68S	IL1RL1_uc010ywa.1_Splice_Site|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Silent_p.S68S	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	68	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGTTTGCCTCAGGCCAACTTC	0.418													36	93					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109379767	109379767	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:109379767G>A	uc002tem.3	+	20	2898	c.2772G>A	c.(2770-2772)CCG>CCA	p.P924P		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	924					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TGCACACACCGCCAGTGCAAA	0.478													28	47					0	0	1	0	0	
ANAPC1	64682	broad.mit.edu	37	2	112608394	112608394	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:112608394T>C	uc002thi.2	-	14	1856	c.1609A>G	c.(1609-1611)ACT>GCT	p.T537A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	537					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GGCTTTGGAGTACTAACGCCA	0.433													4	86					0	0	1	0	0	
EN1	2019	broad.mit.edu	37	2	119604484	119604484	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:119604484G>A	uc002tlm.2	-	1	1276	c.260C>T	c.(259-261)GCG>GTG	p.A87V		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	87					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						AGCAGGCGCCGCGAGATGCTG	0.348													12	11					0	0	1	0	0	
IWS1	55677	broad.mit.edu	37	2	128252455	128252455	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:128252455G>A	uc002ton.2	-	8	2095	c.1792C>T	c.(1792-1794)CTT>TTT	p.L598F	IWS1_uc010yzl.1_RNA	NM_017969	NP_060439	Q96ST2	IWS1_HUMAN	IWS1 homolog	598					transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0735)		TACTTCTTAAGGTGCATAACT	0.279													12	28					0	0	1	0	0	
SAP130	79595	broad.mit.edu	37	2	128775465	128775465	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:128775465G>T	uc002tpp.2	-	3	347	c.215C>A	c.(214-216)TCT>TAT	p.S72Y	SAP130_uc002tpo.2_5'Flank|SAP130_uc010fmd.2_Missense_Mutation_p.S72Y|SAP130_uc002tpq.1_Missense_Mutation_p.S46Y	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	72					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		ACTGACTTCAGAATCTCGACC	0.507													22	32					1.96292e-10	2.11577e-10	1	1	0	
PTPN18	26469	broad.mit.edu	37	2	131130739	131130739	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:131130739T>C	uc002trc.2	+	15	1426	c.1325T>C	c.(1324-1326)CTG>CCG	p.L442P	PTPN18_uc002trd.2_Missense_Mutation_p.L421P|PTPN18_uc002trb.2_Missense_Mutation_p.L335P|PTPN18_uc002tre.2_Missense_Mutation_p.L93P	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	442						cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					GGTTTCAACCTGCGCATTGGG	0.622													8	11					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141458136	141458136	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:141458136C>T	uc002tvj.1	-	41	7454	c.6482G>A	c.(6481-6483)CGA>CAA	p.R2161Q		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2161	Extracellular (Potential).|EGF-like 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGAATTTCCTCGATAAAGACA	0.423										TSP Lung(27;0.18)			37	80					0	0	1	0	0	
RIF1	55183	broad.mit.edu	37	2	152273371	152273371	+	Silent	SNP	G	A	A	rs149505451	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:152273371G>A	uc002txm.2	+	6	589	c.459G>A	c.(457-459)ACG>ACA	p.T153T	RIF1_uc002txl.2_Silent_p.T153T|RIF1_uc010fnv.1_Silent_p.T117T|RIF1_uc002txn.2_Silent_p.T153T|RIF1_uc002txo.2_Silent_p.T153T|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	153					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AAGGAGAGACGCATTCTGCTG	0.299													10	37					0	0	1	0	0	
KCNJ3	3760	broad.mit.edu	37	2	155555820	155555820	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:155555820G>A	uc002tyv.1	+	1	728	c.533G>A	c.(532-534)GGC>GAC	p.G178D	KCNJ3_uc010zce.1_Missense_Mutation_p.G178D	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	178	Helical; Name=M2; (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TTCCTCATCGGCTGCATGTTC	0.577													15	54					0	0	1	0	0	
NR4A2	4929	broad.mit.edu	37	2	157186121	157186121	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:157186121C>T	uc002tyz.3	-	3	1000	c.578G>A	c.(577-579)CGC>CAC	p.R193H	NR4A2_uc002tyx.3_Missense_Mutation_p.R130H|NR4A2_uc010zcf.1_Missense_Mutation_p.R193H|NR4A2_uc010zcg.1_5'Flank	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	193	Pro-rich.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CCCGTCGAAGCGCATCTGGCA	0.647													21	128					0	0	1	0	0	
UPP2	151531	broad.mit.edu	37	2	158971760	158971760	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:158971760C>T	uc002tzp.2	+	3	522	c.328C>T	c.(328-330)CTC>TTC	p.L110F	UPP2_uc002tzo.2_Missense_Mutation_p.L167F	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	110					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						CGGGCCTGTGCTCGCCATCAG	0.448													7	36					0	0	1	0	0	
BAZ2B	29994	broad.mit.edu	37	2	160182228	160182228	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:160182228G>A	uc002uao.2	-	35	6497	c.6145C>T	c.(6145-6147)CAA>TAA	p.Q2049*	BAZ2B_uc002uap.2_Nonsense_Mutation_p.Q2013*	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	2049					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						AAACTTTCTTGTTTTGACAAG	0.333													24	42					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167055891	167055891	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:167055891T>C	uc010fpl.2	-	27	5566	c.5225A>G	c.(5224-5226)AAC>AGC	p.N1742S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1753	Helical; Name=S6 of repeat IV; (Potential).|IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AATGTACATGTTCACCACAAC	0.403													38	143					0	0	1	0	0	
SCN7A	6332	broad.mit.edu	37	2	167289041	167289041	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:167289041A>G	uc002udu.1	-	15	2506	c.2379T>C	c.(2377-2379)CAT>CAC	p.H793H	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	793					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CAGAAAGGGTATGGTCAGAAA	0.358													52	99					0	0	1	0	0	
TTC30B	150737	broad.mit.edu	37	2	178416799	178416799	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:178416799A>G	uc002uln.2	-	1	726	c.693T>C	c.(691-693)ACT>ACC	p.T231T	TTC30B_uc010zfc.1_Silent_p.T3T	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	231					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			CAATGCCCTCAGTGGTCATGC	0.512													14	86					0	0	1	0	0	
TTC30A	92104	broad.mit.edu	37	2	178482730	178482730	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:178482730A>T	uc002ulo.2	-	1	965	c.700T>A	c.(700-702)TTT>ATT	p.F234I		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	234					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			CGAACATCAAAGCCCTCGGTG	0.517													14	57					0	0	1	0	0	
TTC30A	92104	broad.mit.edu	37	2	178482764	178482764	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:178482764A>G	uc002ulo.2	-	1	931	c.666T>C	c.(664-666)CAT>CAC	p.H222H		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	222					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			CTAGCTCAGGATGCTGGCGGA	0.532													7	50					0	0	1	0	0	
TTC30A	92104	broad.mit.edu	37	2	178483324	178483324	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:178483324G>C	uc002ulo.2	-	1	371	c.106C>G	c.(106-108)CGA>GGA	p.R36G		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	36	TPR 1.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			TGCAGTTCTCGGCCCAGCAGC	0.687													4	12					0	0	1	0	0	
PDE11A	50940	broad.mit.edu	37	2	178937033	178937033	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:178937033C>A	uc002ulq.2	-	1	450	c.132G>T	c.(130-132)CAG>CAT	p.Q44H	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	44					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CCCCCTGACCCTGACTGTGCC	0.567									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				12	28					1.08611e-07	1.14373e-07	1	1	0	
TTN	7273	broad.mit.edu	37	2	179399703	179399703	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:179399703T>C	uc010zfg.1	-	307	94159	c.93935A>G	c.(93934-93936)GAA>GGA	p.E31312G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25007G|TTN_uc010zfi.1_Missense_Mutation_p.E24940G|TTN_uc010zfj.1_Missense_Mutation_p.E24815G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32239							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAAATGATTCATGGAGGTG	0.338													17	29					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179435692	179435692	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:179435692G>A	uc010zfg.1	-	275	67687	c.67463C>T	c.(67462-67464)GCC>GTC	p.A22488V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A16183V|TTN_uc010zfi.1_Missense_Mutation_p.A16116V|TTN_uc010zfj.1_Missense_Mutation_p.A15991V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAAAACTGGCTTTCATCCA	0.433													51	125					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179543552	179543552	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:179543552C>A	uc010zfg.1	-	140	30240	c.30016G>T	c.(30016-30018)GAA>TAA	p.E10006*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E6667*|TTN_uc010fre.1_Nonsense_Mutation_p.E663*|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10933							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGGCACTTCAGGAACTTCA	0.423													23	36					6.21321e-17	6.92405e-17	1	1	0	
TTN	7273	broad.mit.edu	37	2	179583588	179583588	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:179583588T>G	uc010zfg.1	-	81	20831	c.20607A>C	c.(20605-20607)AAA>AAC	p.K6869N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K3530N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7796							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCCTGCTGCCTTTAAACCACT	0.488													14	24					0	0	1	0	0	
NAB1	4664	broad.mit.edu	37	2	191524419	191524419	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:191524419C>T	uc002usb.2	+	4	1089	c.517C>T	c.(517-519)CTC>TTC	p.L173F	NAB1_uc010fsc.2_Missense_Mutation_p.L173F|NAB1_uc010fsd.2_Missense_Mutation_p.L173F|NAB1_uc002usc.2_Missense_Mutation_p.L173F|NAB1_uc010zgh.1_Missense_Mutation_p.L173F	NM_005966	NP_005957	Q13506	NAB1_HUMAN	NGFI-A binding protein 1	173					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0405)|all cancers(119;0.109)			CGAGCACAGCCTCTCCCCAGC	0.632													12	27					0	0	1	0	0	
STAT1	6772	broad.mit.edu	37	2	191873701	191873701	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:191873701C>A	uc002usj.2	-	4	649	c.261G>T	c.(259-261)AAG>AAT	p.K87N	STAT1_uc010fse.1_Missense_Mutation_p.K87N|STAT1_uc002usk.2_Missense_Mutation_p.K87N|STAT1_uc002usl.2_Missense_Mutation_p.K89N|STAT1_uc010fsf.1_5'UTR	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	87					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	GAAGATTACGCTTGCTTTTCC	0.378													9	28					0.00448238	0.004556	1	1	0	
HECW2	57520	broad.mit.edu	37	2	197185165	197185165	+	Splice_Site	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:197185165T>G	uc002utm.1	-	8	1068	c.885_splice	c.e8-1	p.G295_splice	HECW2_uc002utl.1_Intron	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin						protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ATTTGATCACTGCAAGAAGAG	0.498													6	12					0	0	1	0	0	
CDK15	65061	broad.mit.edu	37	2	202671427	202671427	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:202671427T>C	uc002uyt.2	+	1	89	c.40T>C	c.(40-42)TGC>CGC	p.C14R	CDK15_uc010ftm.2_Intron|CDK15_uc002uys.2_Intron|CDK15_uc010ftn.1_Intron|CDK15_uc010fto.1_Missense_Mutation_p.C14R	NM_139158	NP_631897	Q96Q40	CDK15_HUMAN	PFTAIRE protein kinase 2	14							ATP binding|cyclin-dependent protein kinase activity|metal ion binding|protein binding			breast(2)|ovary(1)|lung(1)|kidney(1)	5					Adenosine triphosphate(DB00171)	ACAGCCTGGATGCAGCTGCTA	0.537													5	18					0	0	1	0	0	
PARD3B	117583	broad.mit.edu	37	2	206305215	206305215	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:206305215A>G	uc002var.1	+	20	3070	c.2863A>G	c.(2863-2865)AGA>GGA	p.R955G	PARD3B_uc002vao.1_Intron|PARD3B_uc002vap.1_Missense_Mutation_p.R893G|PARD3B_uc002vaq.1_Missense_Mutation_p.R886G	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	955					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CAATTATGCCAGAGTGAACCA	0.478													47	76					0	0	1	0	0	
C2orf80	389073	broad.mit.edu	37	2	209035783	209035783	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:209035783G>A	uc002vcr.2	-	8	631	c.459C>T	c.(457-459)GTC>GTT	p.V153V		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	153										skin(1)	1						TTCTTGACTTGACACCTACAG	0.328													26	59					0	0	1	0	0	
SPAG16	79582	broad.mit.edu	37	2	214149345	214149345	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:214149345T>C	uc002veq.2	+	1	228	c.136_splice	c.e1+2	p.Q46_splice	SPAG16_uc010fuz.1_Splice_Site|SPAG16_uc002ver.2_Splice_Site|SPAG16_uc010zjk.1_Splice_Site|SPAG16_uc002veo.2_Splice_Site_p.Q46_splice|SPAG16_uc002vep.1_Splice_Site_p.Q46_splice|SPAG16_uc002ves.1_5'UTR	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1						cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		ACCTGGAACGTATCCTTCCCG	0.706													5	16					0	0	1	0	0	
FN1	2335	broad.mit.edu	37	2	216262403	216262403	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:216262403G>A	uc002vfa.2	-	22	3783	c.3517C>T	c.(3517-3519)CCA>TCA	p.P1173S	FN1_uc002vfb.2_Missense_Mutation_p.P1173S|FN1_uc002vfc.2_Missense_Mutation_p.P1173S|FN1_uc002vfd.2_Missense_Mutation_p.P1173S|FN1_uc002vfe.2_Missense_Mutation_p.P1173S|FN1_uc002vff.2_Missense_Mutation_p.P1173S|FN1_uc002vfg.2_Missense_Mutation_p.P1173S|FN1_uc002vfh.2_Missense_Mutation_p.P1173S|FN1_uc002vfi.2_Missense_Mutation_p.P1173S|FN1_uc002vfj.2_Missense_Mutation_p.P1173S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1173	Fibronectin type-III 7.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCTTCTTACGTGTCACCACT	0.383													29	43					0	0	1	0	0	
MREG	55686	broad.mit.edu	37	2	216810377	216810377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:216810377G>A	uc002vfo.2	-	4	723	c.427C>T	c.(427-429)CGA>TGA	p.R143*	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	143						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		AACATCTCTCGAGCTTTCCTT	0.393													14	24					0	0	1	0	0	
TNS1	7145	broad.mit.edu	37	2	218674599	218674599	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:218674599G>A	uc002vgt.2	-	30	5306	c.4908C>T	c.(4906-4908)ATC>ATT	p.I1636I	TNS1_uc002vgr.2_Silent_p.I1622I|TNS1_uc002vgs.2_Silent_p.I1615I|TNS1_uc002vgq.2_Silent_p.I136I	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1636						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TGAAGTGAACGATGGTGGCAG	0.562													17	26					0	0	1	0	0	
ARMC9	80210	broad.mit.edu	37	2	232123796	232123796	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:232123796T>C	uc002vrq.3	+	11	1119	c.1007T>C	c.(1006-1008)TTG>TCG	p.L336S	ARMC9_uc002vrp.3_Missense_Mutation_p.L336S	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	336							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		AAAGCCTTCTTGTTGCAGGCT	0.438													17	29					0	0	1	0	0	
C2orf57	165100	broad.mit.edu	37	2	232458511	232458511	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:232458511C>T	uc002vrz.2	+	1	900	c.849C>T	c.(847-849)GGC>GGT	p.G283G		NM_152614	NP_689827	Q53QW1	CB057_HUMAN	hypothetical protein LOC165100	283										ovary(1)	1		Renal(207;0.025)|all_hematologic(139;0.0735)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;1.33e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		TGGACAGGGGCGAGGGCTCCA	0.642													29	69					0	0	1	0	0	
ALPP	250	broad.mit.edu	37	2	233246000	233246000	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:233246000C>T	uc002vsq.2	+	10	1397	c.1232C>T	c.(1231-1233)ACG>ATG	p.T411M	ALPP_uc002vsr.2_RNA	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	411						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		AAGGCCTACACGGTCCTCCTA	0.587													11	30					0	0	1	0	0	
NEU2	4759	broad.mit.edu	37	2	233897493	233897493	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:233897493G>A	uc010zmn.1	+	1	112	c.112G>A	c.(112-114)GCG>ACG	p.A38T		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	38							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GCTGGCCTTCGCGGAACAGCG	0.622													32	38					0	0	1	0	0	
UGT1A4	54657	broad.mit.edu	37	2	234627599	234627599	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:234627599C>T	uc002vux.2	+	1	162	c.133C>T	c.(133-135)CGG>TGG	p.R45W	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.R45W	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	45					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GCTCAGCATGCGGGAGGCCTT	0.607													16	44					0	0	1	0	0	
DNAJB3	414061	broad.mit.edu	37	2	234652144	234652144	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:234652144G>T	uc002vuz.2	-	1	518	c.419C>A	c.(418-420)CCT>CAT	p.P140H	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	140					protein folding		heat shock protein binding|unfolded protein binding				0						GCAGAGAAAAGGGGTGCAGAC	0.517													17	28					4.7546e-09	5.07801e-09	1	1	0	
TRPM8	79054	broad.mit.edu	37	2	234873391	234873391	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:234873391C>A	uc002vvh.2	+	14	1909	c.1869C>A	c.(1867-1869)ACC>ACA	p.T623T	TRPM8_uc010fyj.2_Silent_p.T311T	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	623	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	AGTACGAGACCCGGGCTGTTG	0.582													11	45					3.07112e-06	3.20517e-06	1	1	0	
ILKAP	80895	broad.mit.edu	37	2	239092729	239092729	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:239092729G>A	uc002vxv.2	-	7	688	c.558C>T	c.(556-558)ACC>ACT	p.T186T	ILKAP_uc010zns.1_Silent_p.T118T|ILKAP_uc002vxw.2_Silent_p.T66T|ILKAP_uc010znt.1_Silent_p.T66T	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	186	PP2C-like.					cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		ATCTCTTCACGGTTTTCTCTA	0.393													17	46					0	0	1	0	0	
HDAC4	9759	broad.mit.edu	37	2	240056254	240056254	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:240056254G>A	uc002vyk.3	-	10	1856	c.1064C>T	c.(1063-1065)ACG>ATG	p.T355M	HDAC4_uc010fyz.1_Missense_Mutation_p.T350M|HDAC4_uc010zoa.1_Missense_Mutation_p.T350M|HDAC4_uc010fza.2_Missense_Mutation_p.T355M|HDAC4_uc010fyy.2_Missense_Mutation_p.T307M|HDAC4_uc010znz.1_Missense_Mutation_p.T238M|HDAC4_uc010fzb.1_RNA	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	355					B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		CAGGCCCAGCGTGATGTTGGG	0.647													23	28					0	0	1	0	0	
AQP12B	653437	broad.mit.edu	37	2	241621893	241621893	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:241621893C>T	uc010fzj.2	-	1	425	c.362G>A	c.(361-363)GGC>GAC	p.G121D	AQP12B_uc002vzt.2_RNA	NM_001102467	NP_001095937	A6NM10	AQ12B_HUMAN	aquaporin 12B	109	Helical; Name=3; (Potential).					integral to membrane	transporter activity				0		all_epithelial(40;1.71e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		GGCCTGCATGCCCAGCCCCTG	0.701													16	41					0	0	1	0	0	
SNED1	25992	broad.mit.edu	37	2	242004785	242004785	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:242004785G>A	uc002wah.1	+	21	2784	c.2784G>A	c.(2782-2784)CCG>CCA	p.P928P	SNED1_uc002wai.1_Silent_p.P163P|SNED1_uc002waj.1_Silent_p.P15P|SNED1_uc002wak.2_Silent_p.P15P	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	928	Fibronectin type-III 1.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CCTGGAACCCGCCCAATGGTC	0.612													11	23					0	0	1	0	0	
BOK	666	broad.mit.edu	37	2	242509686	242509686	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:242509686C>T	uc002wbq.2	+	4	742	c.496C>T	c.(496-498)CGG>TGG	p.R166W	BOK_uc002wbr.2_5'Flank	NM_032515	NP_115904	Q9UMX3	BOK_HUMAN	BCL2-related ovarian killer	166	BH2.				activation of caspase activity|cell proliferation|signal transduction by p53 class mediator resulting in induction of apoptosis	mitochondrial membrane|nucleus				ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.04e-33)|all cancers(36;7.87e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.52e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.64e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0835)		AACCTGGCTGCGGAGACGCgg	0.378													3	1					0	0	1	0	0	
LOC728323	728323	broad.mit.edu	37	2	243056854	243056854	+	RNA	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:243056854A>G	uc010zpd.1	+	3		c.315A>G			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_Intron	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						ATCCAAAAAAAGAAAAAGGAC	0.244													4	34					0	0	1	0	0	
SDCBP2	27111	broad.mit.edu	37	20	1291095	1291095	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:1291095G>A	uc002wev.3	-	9	998	c.869C>T	c.(868-870)CCA>CTA	p.P290L	SDCBP2_uc002weu.3_Missense_Mutation_p.P205L	NM_080489	NP_536737	Q9H190	SDCB2_HUMAN	syndecan binding protein 2 isoform a	290					intracellular signal transduction|intracellular transport|nervous system development	cytoplasm	protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity			large_intestine(1)|skin(1)	2						TCAGGCATCTGGGATGGAGTG	0.637													14	34					0	0	1	0	0	
ATRN	8455	broad.mit.edu	37	20	3540127	3540127	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:3540127C>T	uc002wim.2	+	7	1290	c.1200C>T	c.(1198-1200)TAC>TAT	p.Y400Y	ATRN_uc002wil.2_Silent_p.Y400Y	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	400	Extracellular (Potential).|Kelch 1.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						TGGCATTATACAAGGTAAAGC	0.383													19	37					0	0	1	0	0	
CDS2	8760	broad.mit.edu	37	20	5167481	5167481	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:5167481G>A	uc002wls.2	+	10	1234	c.977G>A	c.(976-978)GGC>GAC	p.G326D	CDS2_uc002wlr.1_Missense_Mutation_p.G248D|CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_Missense_Mutation_p.G271D|CDS2_uc010zqu.1_Missense_Mutation_p.G206D|CDS2_uc002wlv.2_Missense_Mutation_p.G228D|CDS2_uc010zqv.1_Intron	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	326					phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						TCAGTCATTGGCTGGGTATGT	0.547													25	54					0	0	1	0	0	
JAG1	182	broad.mit.edu	37	20	10629248	10629248	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:10629248G>A	uc002wnw.2	-	12	2034	c.1518C>T	c.(1516-1518)ATC>ATT	p.I506I	JAG1_uc010gcd.1_Silent_p.I64I	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	506	EGF-like 8; calcium-binding (Potential).|Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						GGAATCTGTTGATTTCATTCT	0.507									Alagille_Syndrome				23	28					0	0	1	0	0	
KIF16B	55614	broad.mit.edu	37	20	16359706	16359706	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:16359706G>A	uc002wpg.1	-	19	3099	c.2941C>T	c.(2941-2943)CGT>TGT	p.R981C	KIF16B_uc002wpe.1_Missense_Mutation_p.R363C|KIF16B_uc002wpf.1_Missense_Mutation_p.R363C|KIF16B_uc010gch.1_Missense_Mutation_p.R981C|KIF16B_uc010gci.1_Missense_Mutation_p.R981C|KIF16B_uc010gcj.1_Missense_Mutation_p.R992C	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	981	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TCCTCCTGACGTGCAATGTTG	0.512													47	123					0	0	1	0	0	
CST7	8530	broad.mit.edu	37	20	24938043	24938043	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:24938043C>T	uc002wtx.1	+	2	467	c.257C>T	c.(256-258)ACG>ATG	p.T86M		NM_003650	NP_003641	O76096	CYTF_HUMAN	cystatin F	64					immune response	cytoplasm|extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						AACAACTGCACGAACGACATG	0.493													26	70					0	0	1	0	0	
RALGAPB	57148	broad.mit.edu	37	20	37168534	37168534	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:37168534T>C	uc002xiw.2	+	17	2752	c.2495T>C	c.(2494-2496)ATG>ACG	p.M832T	RALGAPB_uc002xix.2_Missense_Mutation_p.M828T|RALGAPB_uc002xiy.1_Missense_Mutation_p.M832T|RALGAPB_uc002xiz.2_Missense_Mutation_p.M610T|RALGAPB_uc002xja.1_Missense_Mutation_p.M559T	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	832					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						CTGCACTCCATGATAGTGGCA	0.453													14	52					0	0	1	0	0	
PPP1R16B	26051	broad.mit.edu	37	20	37464806	37464806	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:37464806G>A	uc002xje.2	+	2	427	c.238G>A	c.(238-240)GAC>AAC	p.D80N	PPP1R16B_uc010ggc.2_Missense_Mutation_p.D80N	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	80					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GCTGAGGAACGACGCCGAGGA	0.652													8	29					0	0	1	0	0	
DHX35	60625	broad.mit.edu	37	20	37617501	37617501	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:37617501G>A	uc002xjh.2	+	5	402	c.391G>A	c.(391-393)GAG>AAG	p.E131K	DHX35_uc010zwa.1_5'UTR|DHX35_uc010zwb.1_5'UTR|DHX35_uc010zwc.1_Missense_Mutation_p.E100K	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	131	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GCTGGGCCACGAGGTGGGCTA	0.498													39	69					0	0	1	0	0	
MAFB	9935	broad.mit.edu	37	20	39317379	39317379	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:39317379G>A	uc002xji.2	-	1	498	c.112C>T	c.(112-114)CGC>TGC	p.R38C		NM_005461	NP_005452	Q9Y5Q3	MAFB_HUMAN	transcription factor MAFB	38					negative regulation of erythrocyte differentiation		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		Myeloproliferative disorder(115;0.00878)				CGCTCCGCGCGCCCCAGTGGC	0.682			T	IGH@	MM								29	48					0	0	1	0	0	
PLCG1	5335	broad.mit.edu	37	20	39791907	39791907	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:39791907T>C	uc002xjp.1	+	8	902	c.781T>C	c.(781-783)TAC>CAC	p.Y261H	PLCG1_uc002xjo.1_Missense_Mutation_p.Y261H|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	261					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				CCTTCTTGACTACCAGGGGGT	0.612													15	91					0	0	1	0	0	
PTPRT	11122	broad.mit.edu	37	20	40714411	40714411	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:40714411T>G	uc002xkg.2	-	28	4113	c.3929A>C	c.(3928-3930)GAG>GCG	p.E1310A	PTPRT_uc010ggj.2_Missense_Mutation_p.E1329A|PTPRT_uc010ggi.2_Missense_Mutation_p.E513A	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1310	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GATGATGTCCTCGTCGATGTC	0.562													14	88					0	0	1	0	0	
TOX2	84969	broad.mit.edu	37	20	42683112	42683112	+	Silent	SNP	C	T	T	rs138861548		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:42683112C>T	uc002xlf.3	+	5	869	c.852C>T	c.(850-852)GAC>GAT	p.D284D	TOX2_uc010ggo.2_Silent_p.D275D|TOX2_uc002xle.3_Silent_p.D233D|TOX2_uc010ggp.2_Silent_p.D233D|TOX2_uc002xlg.2_Silent_p.D233D|TOX2_uc010zwk.1_Silent_p.D153D	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	284	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CTTTCGGTGACGTGTCCAAAA	0.592													11	29					0	0	1	0	0	
KCNS1	3787	broad.mit.edu	37	20	43726361	43726361	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:43726361C>T	uc002xnc.2	-	4	1449	c.1052G>A	c.(1051-1053)CGC>CAC	p.R351H	KCNS1_uc002xnd.2_Missense_Mutation_p.R351H	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	351	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				CTTGAGTACGCGGAAGATGCG	0.682													8	20					0	0	1	0	0	
WFDC6	140870	broad.mit.edu	37	20	44167994	44167994	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:44167994T>C	uc002xos.1	-	1	141	c.53A>G	c.(52-54)GAC>GGC	p.D18G	SPINLW1_uc010zxc.1_Intron	NM_080827	NP_543017	Q9BQY6	WFDC6_HUMAN	WAP four-disulfide core domain 6 precursor	18						extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTCCTGGATGTCCCCCAAAAG	0.512													19	51					0	0	1	0	0	
ZNF335	63925	broad.mit.edu	37	20	44586250	44586250	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:44586250C>T	uc002xqw.2	-	17	2540	c.2417G>A	c.(2416-2418)CGG>CAG	p.R806Q	ZNF335_uc002xqv.2_5'Flank|ZNF335_uc010zxk.1_Missense_Mutation_p.R651Q	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	806					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				CCCCAGTTCCCGCTGAGCACT	0.488													9	29					0	0	1	0	0	
PREX1	57580	broad.mit.edu	37	20	47317421	47317421	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:47317421A>G	uc002xtw.1	-	7	810	c.787T>C	c.(787-789)TCC>CCC	p.S263P		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	263					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GTGAGGTTGGAACCCTGGAAG	0.532													44	109					0	0	1	0	0	
ATP9A	10079	broad.mit.edu	37	20	50273655	50273655	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:50273655G>A	uc002xwg.1	-	14	1328	c.1328C>T	c.(1327-1329)ACG>ATG	p.T443M	ATP9A_uc010gih.1_Missense_Mutation_p.T307M|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	443	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						AGTGGTGAGCGTTGGGCCCTT	0.577													9	37					0	0	1	0	0	
SALL4	57167	broad.mit.edu	37	20	50406893	50406893	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:50406893G>A	uc002xwh.3	-	2	2230	c.2129C>T	c.(2128-2130)ACG>ATG	p.T710M	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	710					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGGAAGAGGCGTGGGGACCTT	0.587													24	30					0	0	1	0	0	
BCAS1	8537	broad.mit.edu	37	20	52645067	52645067	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:52645067T>C	uc002xws.2	-	4	925	c.587A>G	c.(586-588)AAA>AGA	p.K196R	BCAS1_uc010zzb.1_Missense_Mutation_p.K99R|BCAS1_uc010gim.2_Missense_Mutation_p.K99R|BCAS1_uc002xwt.2_Missense_Mutation_p.K196R|BCAS1_uc010gil.1_Missense_Mutation_p.K196R|BCAS1_uc010zzc.1_Missense_Mutation_p.K99R	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	196						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CTTGAAGAATTTGTCAAAAAA	0.572													55	118					0	0	1	0	0	
CDH4	1002	broad.mit.edu	37	20	60498761	60498761	+	Silent	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:60498761A>C	uc002ybn.1	+	10	1641	c.1627A>C	c.(1627-1629)AGA>CGA	p.R543R	CDH4_uc002ybp.1_Silent_p.R469R	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	543	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GCAGGCTGTGAGGTGGGTGCA	0.607													11	21					0	0	1	0	0	
LSM14B	149986	broad.mit.edu	37	20	60704949	60704949	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:60704949G>A	uc010gjy.1	+	4	742	c.536G>A	c.(535-537)GGC>GAC	p.G179D	LSM14B_uc010gjx.1_Missense_Mutation_p.G205D|LSM14B_uc002ybv.2_Missense_Mutation_p.G179D|LSM14B_uc010gjz.1_Missense_Mutation_p.G135D|LSM14B_uc010zzz.1_Missense_Mutation_p.G99D	NM_144703	NP_653304	Q9BX40	LS14B_HUMAN	LSM14 homolog B	179					multicellular organismal development|regulation of translation	ribonucleoprotein complex					0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			CCTGGCAAGGGCACCACAGGG	0.557													6	14					0	0	1	0	0	
DIDO1	11083	broad.mit.edu	37	20	61511147	61511147	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:61511147G>A	uc002ydr.1	-	16	6425	c.6161C>T	c.(6160-6162)GCG>GTG	p.A2054V	DIDO1_uc002yds.1_Missense_Mutation_p.A2054V	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2054					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTGTCCGGGCGCACTGGAGGA	0.716													49	94					0	0	1	0	0	
YTHDF1	54915	broad.mit.edu	37	20	61833843	61833843	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:61833843A>G	uc002yeh.2	-	4	1743	c.1449T>C	c.(1447-1449)GAT>GAC	p.D483D	YTHDF1_uc011aaq.1_Silent_p.D433D	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	483	YTH.									ovary(2)	2						TATTGGGTACATCCTTAACAA	0.542													32	46					0	0	1	0	0	
OPRL1	4987	broad.mit.edu	37	20	62729906	62729906	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:62729906G>A	uc002yic.2	+	5	1269	c.867G>A	c.(865-867)GGG>GGA	p.G289G	OPRL1_uc002yid.2_Silent_p.G289G|OPRL1_uc002yif.3_Silent_p.G284G	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	289	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					AAGGGCTGGGGGTTCAGCCGA	0.657													23	43					0	0	1	0	0	
BAGE2	85319	broad.mit.edu	37	21	11049587	11049587	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:11049587G>T	uc002yit.1	-	4	522	c.314C>A	c.(313-315)GCC>GAC	p.A105D		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGTCTCCCGGGCTGTCGCACA	0.393													8	201					5.16669e-11	5.60346e-11	1	1	0	
NRIP1	8204	broad.mit.edu	37	21	16339973	16339973	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:16339973C>T	uc002yjx.2	-	4	1139	c.541G>A	c.(541-543)GCA>ACA	p.A181T		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	181	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TGACTTGATGCAACACCATAG	0.388													15	16					0	0	1	0	0	
USP25	29761	broad.mit.edu	37	21	17205809	17205809	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:17205809G>A	uc002yjy.1	+	17	2353	c.2136G>A	c.(2134-2136)TTG>TTA	p.L712L	USP25_uc011aby.1_Silent_p.L712L|USP25_uc002yjz.1_Silent_p.L712L|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	712	Potential.				protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		AGAAAGCTTTGCAGGAAAAGC	0.368													17	7					0	0	1	0	0	
ADAMTS1	9510	broad.mit.edu	37	21	28214913	28214913	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:28214913G>A	uc002ymf.2	-	2	1277	c.822C>T	c.(820-822)CAC>CAT	p.H274H		NM_006988	NP_008919	Q9UHI8	ATS1_HUMAN	ADAM metallopeptidase with thrombospondin type 1	274	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell proliferation|proteolysis		heparin binding|zinc ion binding			lung(3)|large_intestine(2)|central_nervous_system(1)	6		Breast(209;0.000962)		Lung(58;0.215)		GACCACTGCCGTGGAATTCTG	0.483													13	15					0	0	1	0	0	
HUNK	30811	broad.mit.edu	37	21	33370854	33370854	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:33370854G>A	uc002yph.2	+	11	1862	c.1502G>A	c.(1501-1503)CGC>CAC	p.R501H		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	501					multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						TTTGGCTGCCGCAATATTTTC	0.527													39	31					0	0	1	0	0	
CRYZL1	9946	broad.mit.edu	37	21	34997046	34997046	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:34997046C>T	uc011adw.1	-	3	267	c.87G>A	c.(85-87)GAG>GAA	p.E29E	DONSON_uc002ysn.1_Intron|CRYZL1_uc002ysr.1_Silent_p.E53E|CRYZL1_uc002yss.1_RNA|CRYZL1_uc002yst.1_RNA|CRYZL1_uc002ysu.2_Silent_p.E29E	NM_145858	NP_665857	O95825	QORL1_HUMAN	crystallin, zeta-like 1	29					quinone cofactor metabolic process	cytosol	NADP binding|NADPH:quinone reductase activity|zinc ion binding				0						CAAAGTTATCCTCTGTAACAG	0.308													32	15					0	0	1	0	0	
ABCG1	9619	broad.mit.edu	37	21	43691237	43691237	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:43691237C>T	uc002zaq.2	+	3	450	c.344C>T	c.(343-345)GCC>GTC	p.A115V	ABCG1_uc002zan.2_Missense_Mutation_p.A117V|ABCG1_uc002zam.2_Missense_Mutation_p.A93V|ABCG1_uc002zao.2_Missense_Mutation_p.A112V|ABCG1_uc002zap.2_Missense_Mutation_p.A115V|ABCG1_uc002zar.2_Missense_Mutation_p.A126V|ABCG1_uc011aev.1_Missense_Mutation_p.A126V	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	115	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GAGTTGGTGGCCATTATGGGT	0.502													13	18					0	0	1	0	0	
POFUT2	23275	broad.mit.edu	37	21	46705687	46705687	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:46705687G>A	uc002zhc.2	-	2	313	c.288C>T	c.(286-288)GAC>GAT	p.D96D	POFUT2_uc002zhb.2_RNA|POFUT2_uc002zhd.2_Silent_p.D96D|POFUT2_uc011afp.1_Silent_p.D96D|POFUT2_uc011afq.1_Silent_p.D96D|LOC642852_uc002zhf.2_5'Flank	NM_133635	NP_598368	Q9Y2G5	OFUT2_HUMAN	protein O-fucosyltransferase 2 isoform C	96					fucose metabolic process	endoplasmic reticulum	peptide-O-fucosyltransferase activity				0				Colorectal(79;0.243)		CCTGGTGGATGTCAGGACTCT	0.532													51	43					0	0	1	0	0	
COL6A1	1291	broad.mit.edu	37	21	47419132	47419132	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:47419132G>T	uc002zhu.1	+	26	1842	c.1740G>T	c.(1738-1740)CAG>CAT	p.Q580H	COL6A1_uc010gqd.1_Translation_Start_Site|COL6A1_uc002zhv.1_5'Flank	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	580	Triple-helical region.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	AGGGCCCCCAGGTGGGTGGAT	0.652													3	5					0.004672	0.00474415	1	1	0	
PRMT2	3275	broad.mit.edu	37	21	48078788	48078788	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:48078788G>A	uc002zjx.2	+	8	1100	c.786G>A	c.(784-786)GTG>GTA	p.V262V	PRMT2_uc002zjw.2_Silent_p.V262V|PRMT2_uc002zjy.2_Silent_p.V262V|PRMT2_uc010gqm.2_Intron|PRMT2_uc011aga.1_Intron|PRMT2_uc011agb.1_Silent_p.V262V|PRMT2_uc011agc.1_Intron|PRMT2_uc002zjz.1_Silent_p.V148V	NM_206962	NP_996845	P55345	ANM2_HUMAN	HMT1 hnRNP methyltransferase-like 1	262	Interaction with ESR1.				developmental cell growth|induction of apoptosis|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of androgen receptor signaling pathway	cytosol|nucleus	androgen receptor binding|estrogen receptor binding|histone-arginine N-methyltransferase activity|peroxisome proliferator activated receptor binding|progesterone receptor binding|protein homodimerization activity|retinoic acid receptor binding|signal transducer activity|thyroid hormone receptor binding|transcription coactivator activity			ovary(1)	1	Breast(49;0.247)	Lung NSC(3;0.245)		Epithelial(3;1.03e-07)|OV - Ovarian serous cystadenocarcinoma(3;4.68e-07)|all cancers(3;7.48e-07)|Colorectal(79;0.167)|Lung(125;0.203)|LUSC - Lung squamous cell carcinoma(216;0.23)|READ - Rectum adenocarcinoma(84;0.248)		GTAGCAAGGTGCTCTTCTGGG	0.592													10	11					0	0	1	0	0	
DGCR8	54487	broad.mit.edu	37	22	20094884	20094884	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:20094884G>A	uc002zri.2	+	12	2437	c.2087G>A	c.(2086-2088)CGC>CAC	p.R696H	DGCR8_uc010grz.2_Missense_Mutation_p.R663H|DGCR8_uc002zrj.2_Missense_Mutation_p.R339H	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	696	Necessary for heme-binding and pri-miRNA processing.|Necessary for interaction with DROSHA.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					TCTTTACTGCGCATGTATGGC	0.547													23	44					0	0	1	0	0	
ZDHHC8	29801	broad.mit.edu	37	22	20131022	20131022	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:20131022C>A	uc002zrq.2	+	10	1975	c.1869C>A	c.(1867-1869)GCC>GCA	p.A623A	ZDHHC8_uc002zrr.1_Silent_p.A623A|ZDHHC8_uc010gsa.2_Silent_p.A429A	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	623	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					GCAACCCTGCCCTGCAGACGT	0.711													10	8					0.000442599	0.000452932	1	1	0	
SUSD2	56241	broad.mit.edu	37	22	24584203	24584203	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:24584203C>T	uc002zzn.1	+	14	2396	c.2352C>T	c.(2350-2352)TAC>TAT	p.Y784Y		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	784	Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GACGCAGCTACGCGGTGCTGT	0.652													24	38					0	0	1	0	0	
POM121L9P	29774	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:24659809G>A	uc002zzs.3	+	7		c.3541G>A			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CCCTATCTGCGCACCCGGAGG	0.612													3	3					0	0	1	0	0	
POM121L9P	29774	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:24659813C>T	uc002zzs.3	+	7		c.3545C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ATCTGCGCACCCGGAGGTGGG	0.607													3	3					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26193919	26193919	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:26193919G>T	uc003abz.1	+	12	2627	c.2377_splice	c.e12-1	p.P793_splice	MYO18B_uc003aca.1_Splice_Site_p.P674_splice|MYO18B_uc010guy.1_Splice_Site_p.P674_splice|MYO18B_uc010guz.1_Splice_Site_p.P674_splice|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Splice_Site_p.P306_splice	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB							nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTTGCCCGCAGCCTGAAGATA	0.582													20	67					4.96729e-08	5.25713e-08	1	1	0	
MTMR3	8897	broad.mit.edu	37	22	30403965	30403965	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:30403965G>A	uc003agv.3	+	11	1281	c.953G>A	c.(952-954)CGC>CAC	p.R318H	MTMR3_uc003agu.3_Missense_Mutation_p.R318H|MTMR3_uc003agw.3_Missense_Mutation_p.R318H	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	318	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			TTGGATGCACGCTCCTATGCA	0.522													4	49					0	0	1	0	0	
TRIOBP	11078	broad.mit.edu	37	22	38131430	38131430	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:38131430C>A	uc003atr.2	+	9	5358	c.5087C>A	c.(5086-5088)CCC>CAC	p.P1696H	TRIOBP_uc003atu.2_Missense_Mutation_p.P1524H	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	1696					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GCGAAGGGCCCCAGCTTGCCA	0.617											OREG0026548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	8					0.00909568	0.00920063	1	1	0	
SLC16A8	23539	broad.mit.edu	37	22	38476959	38476959	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:38476959C>T	uc003auu.2	-	4	1216	c.1086G>A	c.(1084-1086)GCG>GCA	p.A362A		NM_013356	NP_037488	O95907	MOT3_HUMAN	solute carrier family 16, member 8	362	Helical; (Potential).				blood coagulation|leukocyte migration|pyruvate metabolic process	integral to plasma membrane|membrane fraction	lactate transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity				0	Melanoma(58;0.045)				Pyruvic acid(DB00119)	CGAACTGCAGCGCGCCCACCA	0.711													4	5					0	0	1	0	0	
TMEM184B	25829	broad.mit.edu	37	22	38621509	38621509	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:38621509G>A	uc003avf.1	-	7	933	c.709C>T	c.(709-711)CGG>TGG	p.R237W	TMEM184B_uc003avg.1_Missense_Mutation_p.R237W|TMEM184B_uc003avh.1_Missense_Mutation_p.R171W|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	237						integral to membrane					0	Melanoma(58;0.045)					AGCAGCTCCCGGGTGGCGAAG	0.592													23	49					0	0	1	0	0	
SREBF2	6721	broad.mit.edu	37	22	42262951	42262951	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:42262951A>G	uc003bbi.2	+	2	374	c.205A>G	c.(205-207)AGC>GGC	p.S69G	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	69	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						cagcagtggcagcagcagcag	0.363													38	55					0	0	1	0	0	
SCUBE1	80274	broad.mit.edu	37	22	43610096	43610096	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:43610096C>A	uc003bdt.1	-	16	2141	c.2053G>T	c.(2053-2055)GGC>TGC	p.G685C		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	685					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CCGCACTTGCCTCCACATTCC	0.657													4	16					0.00909568	0.00920063	1	1	0	
WNT7B	7477	broad.mit.edu	37	22	46345856	46345856	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:46345856C>T	uc003bgo.2	-	2	616	c.242G>A	c.(241-243)CGC>CAC	p.R81H	WNT7B_uc010haa.2_Missense_Mutation_p.R85H	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	81					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGTTCCAGCGTCCGAAGCG	0.637													15	38					0	0	1	0	0	
ALG12	79087	broad.mit.edu	37	22	50297834	50297834	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:50297834C>T	uc003biy.2	-	9	1505	c.1231G>A	c.(1231-1233)GCC>ACC	p.A411T		NM_024105	NP_077010	Q9BV10	ALG12_HUMAN	alpha-1,6-mannosyltransferase ALG12	411					dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane					0		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		BRCA - Breast invasive adenocarcinoma(115;0.199)|LUAD - Lung adenocarcinoma(64;0.247)		TACCTCCAGGCGCTGTTGACT	0.657													24	35					0	0	1	0	0	
C3orf32	51066	broad.mit.edu	37	3	8675523	8675523	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:8675523G>A	uc003bqu.2	-	4	348	c.102C>T	c.(100-102)GGC>GGT	p.G34G	C3orf32_uc003bqz.2_Silent_p.G34G|C3orf32_uc003bqt.2_Intron|C3orf32_uc011atg.1_Intron|C3orf32_uc003bqv.2_Intron|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_Intron|C3orf32_uc003bqy.2_Silent_p.G34G	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	34										skin(1)	1						TCTGGGAAGGGCCTGTGGACT	0.647													7	40					0	0	1	0	0	
CAND2	23066	broad.mit.edu	37	3	12867068	12867068	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:12867068G>A	uc003bxk.2	+	12	3189	c.3140G>A	c.(3139-3141)CGG>CAG	p.R1047Q	CAND2_uc003bxj.2_Missense_Mutation_p.R930Q	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	1047					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						TCGCTAGTCCGGGACCTGCTG	0.612													6	7					0	0	1	0	0	
NKIRAS1	28512	broad.mit.edu	37	3	23952392	23952392	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:23952392C>A	uc003ccj.2	-	3	406	c.4G>T	c.(4-6)GGA>TGA	p.G2*	NKIRAS1_uc003cck.2_Nonsense_Mutation_p.G2*|NKIRAS1_uc003ccl.2_Nonsense_Mutation_p.G2*|NKIRAS1_uc003ccm.2_Nonsense_Mutation_p.G2*	NM_020345	NP_065078	Q9NYS0	KBRS1_HUMAN	kappa B-ras 1	2					I-kappaB kinase/NF-kappaB cascade|small GTPase mediated signal transduction	cytoplasm	GTP binding|GTPase activity				0						CAGCCCTTTCCCATCTTCTCT	0.353													15	24					0.000308642	0.000316155	1	1	0	
DYNC1LI1	51143	broad.mit.edu	37	3	32612171	32612171	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:32612171G>A	uc003cfb.3	-	1	180	c.92C>T	c.(91-93)GCG>GTG	p.A31V	DYNC1LI1_uc011axh.1_Missense_Mutation_p.A31V	NM_016141	NP_057225	Q9Y6G9	DC1L1_HUMAN	dynein, cytoplasmic 1, light intermediate chain	31					cell division|interspecies interaction between organisms|mitosis|positive regulation of mitotic cell cycle spindle assembly checkpoint|transport	centrosome|condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|plasma membrane|spindle pole	ATP binding|motor activity			ovary(1)	1						GTTGCCCGACGCTATCTCGTT	0.682													6	12					0	0	1	0	0	
LRRFIP2	9209	broad.mit.edu	37	3	37149577	37149577	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:37149577C>T	uc003cgp.2	-	14	1124	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	LRRFIP2_uc011ayf.1_Intron|LRRFIP2_uc003cgr.2_Intron|LRRFIP2_uc003cgs.3_Intron|LRRFIP2_uc003cgt.3_Intron	NM_006309	NP_006300	Q9Y608	LRRF2_HUMAN	leucine rich repeat (in FLII) interacting	234	DVL3-binding.|Ser-rich.				Wnt receptor signaling pathway		LRR domain binding			ovary(1)	1						TGGACTGCTTCGGGCTGAACT	0.368													11	25					0	0	1	0	0	
DLEC1	9940	broad.mit.edu	37	3	38163221	38163221	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:38163221G>A	uc003cho.1	+	35	4990	c.4969G>A	c.(4969-4971)GTC>ATC	p.V1657I	DLEC1_uc003chp.1_Missense_Mutation_p.V1657I|DLEC1_uc010hgv.1_Missense_Mutation_p.V1660I|DLEC1_uc003chr.1_Missense_Mutation_p.V728I|DLEC1_uc003chs.1_Missense_Mutation_p.V214I	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1657					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGTCCGGGAGGTCTACCTGAT	0.637													17	52					0	0	1	0	0	
RPSA	3921	broad.mit.edu	37	3	39452388	39452388	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:39452388G>T	uc003cjp.2	+	4	481	c.396G>T	c.(394-396)CAG>CAT	p.Q132H	RPSA_uc003cjq.2_Missense_Mutation_p.Q137H|RPSA_uc003cjr.2_Missense_Mutation_p.Q132H|RPSA_uc003cjt.2_RNA|SNORA62_uc010hhs.2_5'Flank	NM_002295	NP_002286	P08865	RSSA_HUMAN	ribosomal protein SA	132					cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|ribosomal small subunit assembly|rRNA export from nucleus|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome			lung(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		CTGACCACCAGCCTCTCACGG	0.547													17	46					2.37509e-13	2.60814e-13	1	1	0	
KBTBD5	131377	broad.mit.edu	37	3	42727728	42727728	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:42727728C>T	uc003clv.1	+	1	718	c.618C>T	c.(616-618)GAC>GAT	p.D206D		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	206	BACK.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		GTAGCGGCGACGCCGAGGCGC	0.701													5	7					0	0	1	0	0	
KIAA1143	57456	broad.mit.edu	37	3	44795024	44795024	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:44795024C>T	uc011bac.1	-	3	353	c.274G>A	c.(274-276)GAT>AAT	p.D92N		NM_020696	NP_065747	Q96AT1	K1143_HUMAN	hypothetical protein LOC57456	92											0				BRCA - Breast invasive adenocarcinoma(193;0.00847)|KIRC - Kidney renal clear cell carcinoma(197;0.0465)|Kidney(197;0.0582)		ATTCTTCCATCGGCTGGAGTT	0.343													21	37					0	0	1	0	0	
CDCP1	64866	broad.mit.edu	37	3	45136923	45136923	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:45136923T>C	uc003com.2	-	5	1297	c.1162A>G	c.(1162-1164)ACC>GCC	p.T388A		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	388	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		GATGTCAGGGTGAGGTTGCTA	0.502													22	30					0	0	1	0	0	
FYCO1	79443	broad.mit.edu	37	3	45965194	45965194	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:45965194G>A	uc003cpb.3	-	17	4521	c.4315C>T	c.(4315-4317)CGC>TGC	p.R1439C	FYCO1_uc011bal.1_Missense_Mutation_p.R1459C	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	1439	GOLD.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CCGGGTGTGCGAACCTTGAGC	0.557													41	64					0	0	1	0	0	
PTPN23	25930	broad.mit.edu	37	3	47453790	47453790	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:47453790C>T	uc003crf.1	+	23	4292	c.4196C>T	c.(4195-4197)ACG>ATG	p.T1399M	PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.T1269M|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1399	Tyrosine-protein phosphatase.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTGGGCCGCACGGGAGCCTTT	0.632													37	73					0	0	1	0	0	
DHX30	22907	broad.mit.edu	37	3	47882645	47882645	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:47882645C>A	uc003cru.2	+	7	1071	c.645C>A	c.(643-645)TCC>TCA	p.S215S	DHX30_uc003crs.2_Silent_p.S176S|DHX30_uc003crt.2_Silent_p.S176S|DHX30_uc010hjr.1_Silent_p.S243S	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	215						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AGCAGGATTCCCACGCTCCAC	0.567													10	13					1.11149e-13	1.2231e-13	1	1	0	
CELSR3	1951	broad.mit.edu	37	3	48698423	48698423	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:48698423G>A	uc003cul.2	-	1	1926	c.1645C>T	c.(1645-1647)CGC>TGC	p.R549C	CELSR3_uc003cuf.1_Missense_Mutation_p.R619C	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	549	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCCACGTAGCGCTTCTCGCTG	0.647													14	34					0	0	1	0	0	
BSN	8927	broad.mit.edu	37	3	49691512	49691512	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:49691512C>T	uc003cxe.3	+	5	4637	c.4523C>T	c.(4522-4524)ACG>ATG	p.T1508M		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1508					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCTACACAGACGCCAAGTCCA	0.622													42	65					0	0	1	0	0	
CAMKV	79012	broad.mit.edu	37	3	49899527	49899527	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:49899527C>T	uc003cxt.1	-	3	371	c.178G>A	c.(178-180)GGC>AGC	p.G60S	CAMKV_uc011bcy.1_5'UTR|CAMKV_uc003cxv.1_Missense_Mutation_p.G60S|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Missense_Mutation_p.G60S|CAMKV_uc011bcz.1_Silent_p.T36T|CAMKV_uc011bda.1_Missense_Mutation_p.G60S|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	60	Protein kinase.		G -> S (in an ovarian serous carcinoma sample; somatic mutation).			cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity	p.G60S(1)		ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		ACCTTGCGGCCGTCCCGCTTC	0.597													9	25					0	0	1	0	0	
GNAT1	2779	broad.mit.edu	37	3	50231088	50231088	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:50231088G>A	uc003cym.2	+	4	557	c.441G>A	c.(439-441)TCG>TCA	p.S147S	GNAT1_uc003cyl.2_Silent_p.S147S	NM_144499	NP_653082	P11488	GNAT1_HUMAN	rod-type transducin alpha subunit	147					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|negative regulation of cyclic-nucleotide phosphodiesterase activity|rhodopsin mediated phototransduction|sensory perception of umami taste	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	acyl binding|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GDP binding|GTP binding|GTPase activity|protein kinase binding|signal transducer activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		TCAACGACTCGGCGGGCTAGT	0.498													18	27					0	0	1	0	0	
RAD54L2	23132	broad.mit.edu	37	3	51696873	51696873	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:51696873G>A	uc011bdt.1	+	22	3966	c.3841G>A	c.(3841-3843)GTG>ATG	p.V1281M	RAD54L2_uc003dbh.2_Missense_Mutation_p.V870M|RAD54L2_uc011bdu.1_Missense_Mutation_p.V975M|RAD54L2_uc003dbj.2_Missense_Mutation_p.V607M	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1281						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GCCAGCCCCCGTGCAGCCGTA	0.622													10	23					0	0	1	0	0	
STAB1	23166	broad.mit.edu	37	3	52539377	52539377	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:52539377C>T	uc003dej.2	+	14	1635	c.1561C>T	c.(1561-1563)CGC>TGC	p.R521C	STAB1_uc003dei.1_Missense_Mutation_p.R521C	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	521	Extracellular (Potential).|FAS1 2.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGCCTTCAGCCGCTTTGAAAC	0.597													9	18					0	0	1	0	0	
ITIH4	3700	broad.mit.edu	37	3	52850920	52850920	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:52850920C>T	uc003dfz.2	-	21	2487	c.2451G>A	c.(2449-2451)ACG>ACA	p.T817T	ITIH4_uc011bel.1_Silent_p.T531T|ITIH4_uc003dfy.2_Silent_p.T612T|ITIH4_uc011bem.1_Silent_p.T822T|ITIH4_uc011ben.1_Silent_p.T787T	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	817				ET -> QR (in Ref. 5; AA sequence).	acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CTGAGAATAGCGTCTCCTTCC	0.587													55	155					0	0	1	0	0	
RFT1	91869	broad.mit.edu	37	3	53126559	53126559	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:53126559G>A	uc003dgj.2	-	12	1338	c.1284C>T	c.(1282-1284)AGC>AGT	p.S428S	RFT1_uc003dgk.2_Silent_p.S389S	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	428	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		TGAAGCCCACGCTGCCACACC	0.557													3	6					0	0	1	0	0	
ACTR8	93973	broad.mit.edu	37	3	53906528	53906528	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:53906528G>A	uc003dhd.2	-	10	1244	c.1185C>T	c.(1183-1185)CCC>CCT	p.P395P	ACTR8_uc003dhb.2_Silent_p.P100P|ACTR8_uc003dhc.2_Silent_p.P284P	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	actin-related protein 8	395					cell division|DNA recombination|DNA repair|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		CAAAAGTTGCGGGGTAAAACA	0.438													57	74					0	0	1	0	0	
ARF4	378	broad.mit.edu	37	3	57582804	57582804	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:57582804T>C	uc003dix.3	-	1	412	c.64A>G	c.(64-66)ATG>GTG	p.M22V	ARF4_uc003diy.3_RNA|ARF4_uc010hnd.2_Missense_Mutation_p.M22V|ARF4_uc003diz.3_RNA	NM_001660	NP_001651	P18085	ARF4_HUMAN	ADP-ribosylation factor 4	22					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0449)|Kidney(284;0.0561)		CACTCACCCATCAAAATGCGC	0.587													15	21					0	0	1	0	0	
FLNB	2317	broad.mit.edu	37	3	58109159	58109159	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:58109159G>A	uc003djj.2	+	21	3631	c.3466G>A	c.(3466-3468)GTC>ATC	p.V1156I	FLNB_uc010hne.2_Missense_Mutation_p.V1156I|FLNB_uc003djk.2_Missense_Mutation_p.V1156I|FLNB_uc010hnf.2_Missense_Mutation_p.V1156I|FLNB_uc003djl.2_Missense_Mutation_p.V987I|FLNB_uc003djm.2_Missense_Mutation_p.V987I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1156	Interaction with FBLP1.|Filamin 10.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCTCCTTAGCGTCGACTGCTC	0.582													36	80					0	0	1	0	0	
FAM3D	131177	broad.mit.edu	37	3	58620027	58620027	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:58620027G>A	uc003dkq.2	-	10	951	c.654C>T	c.(652-654)TGC>TGT	p.C218C		NM_138805	NP_620160	Q96BQ1	FAM3D_HUMAN	family with sequence similarity 3, member D	218					negative regulation of insulin secretion	extracellular region	cytokine activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000225)|Kidney(10;0.000667)|KIRC - Kidney renal clear cell carcinoma(10;0.000802)|OV - Ovarian serous cystadenocarcinoma(275;0.169)		TCGGGGGCATGCAGCCCTCCA	0.552													26	56					0	0	1	0	0	
SLC25A26	115286	broad.mit.edu	37	3	66293695	66293695	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:66293695A>T	uc011bfq.1	+	4	987	c.259A>T	c.(259-261)ACA>TCA	p.T87S	SLC25A26_uc011bfs.1_5'UTR|SLC25A26_uc011bft.1_RNA|SLC25A26_uc011bfr.1_Missense_Mutation_p.T87S|SLC25A26_uc003dmt.2_5'UTR	NM_173471	NP_775742	Q70HW3	SAMC_HUMAN	solute carrier family 25, member 26 isoform a	87	Solcar 2.|Helical; Name=3; (Potential).					integral to membrane|mitochondrial inner membrane|nucleus	S-adenosylmethionine transmembrane transporter activity			pancreas(1)	1		Lung NSC(201;0.00774)		BRCA - Breast invasive adenocarcinoma(55;0.00046)|KIRC - Kidney renal clear cell carcinoma(15;0.0515)|Kidney(15;0.0648)		TTCATATTTGACACCTATGAA	0.343													30	81					0	0	1	0	0	
FOXP1	27086	broad.mit.edu	37	3	71090609	71090609	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:71090609T>C	uc003dol.2	-	7	1062	c.739A>G	c.(739-741)AAC>GAC	p.N247D	FOXP1_uc003dom.2_Missense_Mutation_p.N171D|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.N247D|FOXP1_uc003dop.2_Missense_Mutation_p.N247D|FOXP1_uc003doq.1_Missense_Mutation_p.N246D|FOXP1_uc003doi.2_Missense_Mutation_p.N147D|FOXP1_uc003doj.2_Missense_Mutation_p.N147D|FOXP1_uc003dok.2_Missense_Mutation_p.N60D|FOXP1_uc003dor.1_Missense_Mutation_p.N25D	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	247					cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		CTGTGATTGTTGCCTGTGGTT	0.448			T	PAX5	ALL								15	56					0	0	1	0	0	
FAM86D	692099	broad.mit.edu	37	3	75475685	75475685	+	Missense_Mutation	SNP	A	G	G	rs11128433	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:75475685A>G	uc003dpp.3	-	7	912	c.553T>C	c.(553-555)TGG>CGG	p.W185R	FAM86D_uc003dpo.3_RNA|FAM86D_uc003dps.3_RNA|FAM86D_uc003dpq.3_Missense_Mutation_p.W93R|FAM86D_uc003dpr.3_RNA	NR_024241				RecName: Full=Protein FAM86B1;												0						TGGTGCTCCCAGCAGGCAGCC	0.602													4	61					0	0	1	0	0	
PROS1	5627	broad.mit.edu	37	3	93605255	93605255	+	Silent	SNP	C	T	T	rs148869673	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:93605255C>T	uc003drb.3	-	11	1589	c.1248G>A	c.(1246-1248)CCG>CCA	p.P416P	PROS1_uc010hoo.2_Silent_p.P285P|PROS1_uc003dqz.3_Silent_p.P285P	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	416	Laminin G-like 1.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	ATCCATTTTCCGGCTTAAAAA	0.373													33	109					0	0	1	0	0	
EPHA6	285220	broad.mit.edu	37	3	96706798	96706798	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:96706798T>C	uc010how.1	+	3	1118	c.1075T>C	c.(1075-1077)TGC>CGC	p.C359R	EPHA6_uc003drp.1_Missense_Mutation_p.C359R	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	264	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AAGGTGCATCTGCAGTACAGG	0.378													20	39					0	0	1	0	0	
IMPG2	50939	broad.mit.edu	37	3	100964796	100964796	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:100964796C>T	uc003duq.1	-	12	1596	c.1393G>A	c.(1393-1395)GCC>ACC	p.A465T	IMPG2_uc011bhe.1_Missense_Mutation_p.A328T	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	465	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GAGGGAAAGGCTAATTTGTGT	0.507													31	72					0	0	1	0	0	
CASR	846	broad.mit.edu	37	3	121981056	121981056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:121981056C>T	uc003eev.3	+	4	1546	c.1174C>T	c.(1174-1176)CGA>TGA	p.R392*	CASR_uc003eew.3_Nonsense_Mutation_p.R392*	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	392	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GACAGCCTTCCGACCCCTCTG	0.493													20	54					0	0	1	0	0	
EEFSEC	60678	broad.mit.edu	37	3	127983467	127983467	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:127983467C>T	uc003eki.2	+	4	667	c.629C>T	c.(628-630)ACG>ATG	p.T210M	EEFSEC_uc003ekj.2_Intron	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	210						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						TAGCTCCTGACGTCCCAGATT	0.567													44	112					0	0	1	0	0	
KIAA1257	57501	broad.mit.edu	37	3	128696934	128696934	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:128696934C>T	uc003elj.3	-	5	958	c.762G>A	c.(760-762)CCG>CCA	p.P254P	KIAA1257_uc003elg.1_Silent_p.P254P|KIAA1257_uc003eli.3_Silent_p.P142P	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	254											0						GTTTTCCTGGCGGATGTTCCT	0.433													23	51					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130377519	130377519	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:130377519G>T	uc010htl.2	+	33	5765	c.5734_splice	c.e33-1	p.I1912_splice	COL6A6_uc003eni.3_Splice_Site_p.I11_splice	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor						axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCTTCTTTTAGATTGACGACA	0.478													5	10					0.00116845	0.00119109	1	1	0	
MSL2	55167	broad.mit.edu	37	3	135871069	135871069	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:135871069A>G	uc003eqx.1	-	2	1387	c.654T>C	c.(652-654)ATT>ATC	p.I218I	MSL2_uc011bmb.1_Silent_p.I144I	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	218					histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						TACATACGTCAATCGTATTTG	0.393													18	46					0	0	1	0	0	
SPSB4	92369	broad.mit.edu	37	3	140785540	140785540	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:140785540C>T	uc003ett.2	+	2	848	c.594C>T	c.(592-594)GGC>GGT	p.G198G	SPSB4_uc010hum.2_Silent_p.G198G	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	198	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						AGTACCTGGGCGTGGCCTTCC	0.632													9	45					0	0	1	0	0	
TRPC1	7220	broad.mit.edu	37	3	142467219	142467219	+	Silent	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:142467219A>T	uc003evc.2	+	4	685	c.549A>T	c.(547-549)GTA>GTT	p.V183V	TRPC1_uc003evb.2_Silent_p.V149V	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	183	Cytoplasmic (Potential).|ANK 4.				axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						AACAGGATGTATCTCTACCCA	0.398													54	152					0	0	1	0	0	
IGSF10	285313	broad.mit.edu	37	3	151171285	151171285	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:151171285G>T	uc011bod.1	-	3	602	c.602C>A	c.(601-603)CCT>CAT	p.P201H		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	201	LRR 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CATCTCTTGAGGGAGGGAGGT	0.433													19	85					3.32936e-07	3.49899e-07	1	1	0	
PLCH1	23007	broad.mit.edu	37	3	155200527	155200527	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:155200527A>G	uc011bok.1	-	23	3589	c.3312T>C	c.(3310-3312)GGT>GGC	p.G1104G	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.G1066G	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1104					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGATTTTCACACCATGCAGAT	0.473													48	150					0	0	1	0	0	
IL12A	3592	broad.mit.edu	37	3	159713213	159713213	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:159713213C>T	uc003fcx.2	+	7	844	c.629C>T	c.(628-630)ACT>ATT	p.T210I	uc003fcw.1_Intron	NM_000882	NP_000873	P29459	IL12A_HUMAN	interleukin 12A precursor	176					cell cycle arrest|cell migration|defense response to Gram-positive bacterium|immune response|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of cell adhesion|positive regulation of interferon-gamma production|positive regulation of natural killer cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of NK T cell activation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of tyrosine phosphorylation of Stat4 protein|response to lipopolysaccharide|response to UV-B|response to virus	interleukin-12 complex	cytokine activity|growth factor activity|interleukin-12 receptor binding|interleukin-27 binding|protein heterodimerization activity				0			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			AACAGTGAGACTGTGCCACAA	0.368													13	86					0	0	1	0	0	
SLC7A14	57709	broad.mit.edu	37	3	170216628	170216628	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:170216628G>A	uc003fgz.2	-	4	903	c.587C>T	c.(586-588)GCG>GTG	p.A196V	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	196	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CACGATGACCGCGATCAACAG	0.473													19	76					0	0	1	0	0	
ECT2	1894	broad.mit.edu	37	3	172520688	172520688	+	Missense_Mutation	SNP	G	A	A	rs146823982		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:172520688G>A	uc003fii.2	+	19	2069	c.1931G>A	c.(1930-1932)CGG>CAG	p.R644Q	ECT2_uc010hwv.1_Missense_Mutation_p.R675Q|ECT2_uc003fih.2_Missense_Mutation_p.R643Q|ECT2_uc003fij.1_Missense_Mutation_p.R644Q|ECT2_uc003fik.1_Missense_Mutation_p.R644Q|ECT2_uc003fil.1_Missense_Mutation_p.R675Q|ECT2_uc003fim.1_5'UTR	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	644	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTAGTACAGCGGGTTGAAACA	0.378													11	50					0	0	1	0	0	
KCNMB2	10242	broad.mit.edu	37	3	178546038	178546038	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:178546038C>T	uc003fjd.2	+	4	643	c.300C>T	c.(298-300)AGC>AGT	p.S100S	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Silent_p.S100S|KCNMB2_uc003fjf.2_Silent_p.S100S|KCNMB2_uc011bqa.1_Intron|KCNMB2_uc011bqb.1_Intron	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	100	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			GCTCCTTCAGCTGTGGTCCAG	0.512													20	64					0	0	1	0	0	
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAATCACTGAGCAGGAGAA	0.353	E545K(RERFLCSQ1_LUNG)|E545K(KYSE510_OESOPHAGUS)|E545K(NCIH508_LARGE_INTESTINE)|E545K(HCC202_BREAST)|E545K(BFTC909_KIDNEY)|E545K(HCT15_LARGE_INTESTINE)|E545K(NCIH596_LUNG)|E545K(L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545K(DLD1_LARGE_INTESTINE)|E545K(ESS1_ENDOMETRIUM)|E545K(MDAMB361_BREAST)|E545K(MKN1_STOMACH)|E545K(MCF7_BREAST)|E545K(NCIH460_LUNG)|E545K(TCCSUP_URINARY_TRACT)|E545K(HSC4_UPPER_AERODIGESTIVE_TRACT)|E545K(BC3C_URINARY_TRACT)|E545K(HUH28_BILIARY_TRACT)|E545K(HT1197_URINARY_TRACT)|E545K(TE5_OESOPHAGUS)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			16	54					0	0	1	0	0	
DVL3	1857	broad.mit.edu	37	3	183884279	183884279	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:183884279C>T	uc003fms.2	+	9	1089	c.949C>T	c.(949-951)CGG>TGG	p.R317W	DVL3_uc011bqw.1_Missense_Mutation_p.R317W|DVL3_uc003fmt.2_Silent_p.S5S|DVL3_uc003fmu.2_Missense_Mutation_p.R149W	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	317	PDZ.				canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CGATGCAGTCCGGGTACTGCG	0.537													39	92					0	0	1	0	0	
ABCF3	55324	broad.mit.edu	37	3	183908990	183908990	+	Missense_Mutation	SNP	G	A	A	rs113949696		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:183908990G>A	uc003fmz.2	+	16	1649	c.1516G>A	c.(1516-1518)GTC>ATC	p.V506I	ABCF3_uc003fna.2_Missense_Mutation_p.V500I|ABCF3_uc003fnb.2_Missense_Mutation_p.V187I	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	506	ABC transporter 2.						ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TCCGAAGCACGTCATCTTCAG	0.542													35	167					0	0	1	0	0	
CLCN2	1181	broad.mit.edu	37	3	184075423	184075423	+	Missense_Mutation	SNP	C	T	T	rs149439531		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:184075423C>T	uc003foi.2	-	7	881	c.757G>A	c.(757-759)GCG>ACG	p.A253T	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Missense_Mutation_p.A253T|CLCN2_uc011brl.1_Missense_Mutation_p.A253T|CLCN2_uc011brm.1_Missense_Mutation_p.A209T|CLCN2_uc011brn.1_Missense_Mutation_p.A253T	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	253						chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	ATAGGTGCCGCGAAGCAGCAG	0.647													19	65					0	0	1	0	0	
HRG	3273	broad.mit.edu	37	3	186395311	186395311	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:186395311C>A	uc003fqq.2	+	7	1240	c.1217C>A	c.(1216-1218)CCC>CAC	p.P406H		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	406	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ggacaccatccccactgccat	0.249													4	18					0.150653	0.15094	1	1	0	
LRRC15	131578	broad.mit.edu	37	3	194080887	194080887	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:194080887G>A	uc003ftu.2	-	2	972	c.886C>T	c.(886-888)CGG>TGG	p.R296W	LRRC15_uc003ftt.2_Missense_Mutation_p.R302W	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	296	Extracellular (Potential).|LRR 11.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CAAAGCTCCCGCAGGTTGGGC	0.552													28	72					0	0	1	0	0	
TMEM44	93109	broad.mit.edu	37	3	194344395	194344395	+	Missense_Mutation	SNP	G	A	A	rs141093359		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:194344395G>A	uc010hzn.2	-	4	557	c.388C>T	c.(388-390)CGG>TGG	p.R130W	TMEM44_uc003fue.2_Missense_Mutation_p.R130W|TMEM44_uc003fud.2_Missense_Mutation_p.R130W|TMEM44_uc003fuf.2_Missense_Mutation_p.R130W|TMEM44_uc011bsv.1_Missense_Mutation_p.R130W|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	130	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		CTGAGCTGCCGCCTCCTCTTC	0.627													11	46					0	0	1	0	0	
MUC4	4585	broad.mit.edu	37	3	195501057	195501057	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:195501057G>A	uc011bto.1	-	5	13139	c.12679C>T	c.(12679-12681)CGT>TGT	p.R4227C	MUC4_uc003fuz.2_Silent_p.S34S|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_5'UTR|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_5'UTR|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_5'UTR|MUC4_uc011bti.1_5'UTR|MUC4_uc011btj.1_Missense_Mutation_p.R96C|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Missense_Mutation_p.R96C|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.R119C|MUC4_uc003fvp.2_Missense_Mutation_p.R68C|MUC4_uc010hzu.1_Missense_Mutation_p.R967C	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1112					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGGAATCACGGAGAGAGGAG	0.667													12	21					0	0	1	0	0	
PIGG	54872	broad.mit.edu	37	4	533012	533012	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:533012G>A	uc003gak.3	+	13	2942	c.2806G>A	c.(2806-2808)GTT>ATT	p.V936I	PIGG_uc003gaj.3_Missense_Mutation_p.V928I|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.V803I|PIGG_uc003gal.3_Missense_Mutation_p.V847I	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	936	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity	p.V928I(1)		central_nervous_system(2)|ovary(1)|skin(1)	4						CACGTACATCGTTTTGGTGAC	0.398													24	34					0	0	1	0	0	
TMEM175	84286	broad.mit.edu	37	4	951613	951613	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:951613G>A	uc003gbq.2	+	11	942	c.844G>A	c.(844-846)GAA>AAA	p.E282K	TMEM175_uc003gbr.2_Missense_Mutation_p.E200K|TMEM175_uc003gbu.2_Missense_Mutation_p.E200K|TMEM175_uc003gbs.2_Missense_Mutation_p.E165K|TMEM175_uc003gbt.2_Missense_Mutation_p.E165K|TMEM175_uc003gbv.2_Missense_Mutation_p.E165K|TMEM175_uc010ibm.2_Missense_Mutation_p.E98K	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	282						integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TGTTCTCAGCGAAGACAACGT	0.652													29	67					0	0	1	0	0	
ZFYVE28	57732	broad.mit.edu	37	4	2306598	2306598	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:2306598C>T	uc003gex.1	-	8	1788	c.1469G>A	c.(1468-1470)GGC>GAC	p.G490D	ZFYVE28_uc011bvk.1_Missense_Mutation_p.G420D|ZFYVE28_uc011bvl.1_Missense_Mutation_p.G460D|ZFYVE28_uc003gew.1_Missense_Mutation_p.G376D	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	490					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						CACCTCCCAGCCGTCCAGGTG	0.647													29	55					0	0	1	0	0	
EVC2	132884	broad.mit.edu	37	4	5696067	5696067	+	Missense_Mutation	SNP	G	A	A	rs148388393		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:5696067G>A	uc003gij.2	-	3	499	c.445C>T	c.(445-447)CGC>TGC	p.R149C	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.R69C	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	149						integral to membrane				large_intestine(3)|ovary(2)	5						CTTACCAGGCGGTGTGTTATA	0.393													18	30					0	0	1	0	0	
CCDC96	257236	broad.mit.edu	37	4	7043818	7043818	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:7043818G>A	uc003gjv.2	-	1	911	c.848C>T	c.(847-849)GCG>GTG	p.A283V	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	283											0						GCGCAGGTACGCTTGCTCTTT	0.652													35	133					0	0	1	0	0	
CPZ	8532	broad.mit.edu	37	4	8621094	8621094	+	Missense_Mutation	SNP	G	A	A	rs113699437	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:8621094G>A	uc003glm.2	+	11	1835	c.1709G>A	c.(1708-1710)CGG>CAG	p.R570Q	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.R433Q|CPZ_uc003glo.2_Missense_Mutation_p.R559Q|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	570					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						ATCCCCGCCCGGATGAAGAGG	0.577													13	34					0	0	1	0	0	
NKX3-2	579	broad.mit.edu	37	4	13545921	13545921	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:13545921C>T	uc003gmx.2	-	1	194	c.118G>A	c.(118-120)GCG>ACG	p.A40T		NM_001189	NP_001180	P78367	NKX32_HUMAN	NK3 homeobox 2	40					negative regulation of chondrocyte differentiation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ACCGATGCCGCTGTgcccccg	0.507													4	1					0	0	1	0	0	
SLIT2	9353	broad.mit.edu	37	4	20512694	20512694	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:20512694T>C	uc003gpr.1	+	11	1196	c.992T>C	c.(991-993)CTG>CCG	p.L331P	SLIT2_uc003gps.1_Missense_Mutation_p.L331P	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	331	LRR 8.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTTAGTGACCTGAGCAATAAT	0.378													29	36					0	0	1	0	0	
C4orf19	55286	broad.mit.edu	37	4	37592069	37592069	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:37592069C>T	uc003gsw.3	+	4	575	c.392C>T	c.(391-393)CCC>CTC	p.P131L	C4orf19_uc003gsy.3_Missense_Mutation_p.P131L	NM_001104629	NP_001098099	Q8IY42	CD019_HUMAN	hypothetical protein LOC55286	131											0						AATACTGTTCCCCCAACTCAA	0.597													35	74					0	0	1	0	0	
TLR6	10333	broad.mit.edu	37	4	38830420	38830420	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:38830420C>T	uc003gtm.2	-	1	741	c.675G>A	c.(673-675)CTG>CTA	p.L225L	TLR6_uc010ifg.1_Silent_p.L225L	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	225	Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						TAATATTAGTCAGTTGTAAGC	0.333													13	29					0	0	1	0	0	
SRD5A3	79644	broad.mit.edu	37	4	56236103	56236103	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:56236103G>A	uc003hau.2	+	5	897	c.802G>A	c.(802-804)GTC>ATC	p.V268I	uc003hav.1_Intron|uc003haw.1_Intron	NM_024592	NP_078868	Q9H8P0	PORED_HUMAN	steroid 5 alpha-reductase 3	268	Helical; (Potential).				androgen biosynthetic process|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|polyprenol catabolic process	endoplasmic reticulum membrane|integral to membrane	3-oxo-5-alpha-steroid 4-dehydrogenase activity|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0	all_cancers(7;0.0308)|all_lung(4;0.00195)|Lung NSC(11;0.00431)|all_epithelial(27;0.0425)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.0179)			TTCCATGGCCGTCACCTTTGG	0.453													33	61					0	0	1	0	0	
C4orf14	84273	broad.mit.edu	37	4	57843591	57843591	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:57843591T>G	uc003hck.2	-	1	236	c.161A>C	c.(160-162)TAT>TCT	p.Y54S	POLR2B_uc003hcl.1_5'Flank|POLR2B_uc011cae.1_5'Flank|POLR2B_uc011caf.1_5'Flank	NM_032313	NP_115689	Q8NC60	CD014_HUMAN	hypothetical protein LOC84273	54							GTP binding			ovary(1)|breast(1)	2	Glioma(25;0.08)|all_neural(26;0.181)					CACGGGGTCATAAGGAAGCTC	0.652													25	57					0	0	1	0	0	
AFM	173	broad.mit.edu	37	4	74367503	74367503	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:74367503G>T	uc003hhb.2	+	13	1678	c.1647_splice	c.e13-1	p.R549_splice		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor						vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTTGGCCACAGGTTTCTTGTC	0.383													10	24					0.00829132	0.00841125	1	1	0	
CXCL10	3627	broad.mit.edu	37	4	76943854	76943854	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:76943854C>T	uc003hjl.3	-	2	248	c.178G>A	c.(178-180)GTT>ATT	p.V60I	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_001565	NP_001556	P02778	CXL10_HUMAN	small inducible cytokine B10 precursor	60					blood circulation|cell surface receptor linked signaling pathway|cell-cell signaling|chemotaxis|inflammatory response|muscle organ development|positive regulation of cell proliferation	extracellular space	cAMP-dependent protein kinase regulator activity|chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ATGATCTCAACACGTGGACAA	0.333													30	61					0	0	1	0	0	
HPSE	10855	broad.mit.edu	37	4	84234371	84234371	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:84234371G>A	uc003hoj.3	-	4	668	c.569C>T	c.(568-570)GCG>GTG	p.A190V	HPSE_uc010ika.2_Intron|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Intron|HPSE_uc011cct.1_Missense_Mutation_p.A190V|HPSE_uc003hok.3_Missense_Mutation_p.A190V	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	190					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	TCTTAATAACGCATTTAGGCC	0.413													8	45					0	0	1	0	0	
WDFY3	23001	broad.mit.edu	37	4	85708812	85708812	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:85708812C>T	uc003hpd.2	-	23	4132	c.3724G>A	c.(3724-3726)GTG>ATG	p.V1242M		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1242						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		ACCGTGCTCACCACTGGTGGA	0.488													13	34					0	0	1	0	0	
ABCG2	9429	broad.mit.edu	37	4	89034590	89034590	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:89034590G>A	uc003hrg.2	-	9	1552	c.1059C>T	c.(1057-1059)TCC>TCT	p.S353S	ABCG2_uc003hrh.2_Silent_p.S353S|ABCG2_uc003hrf.2_Silent_p.S221S	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	353	Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	TCTCACCCCCGGAAAGTTGAT	0.428													38	87					0	0	1	0	0	
PPM1K	152926	broad.mit.edu	37	4	89199582	89199582	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:89199582G>A	uc003hrm.3	-	2	544	c.154C>T	c.(154-156)CCA>TCA	p.P52S	PPM1K_uc010ikp.1_Missense_Mutation_p.P52S|PPM1K_uc003hrn.2_Missense_Mutation_p.P52S	NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	52					protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		CTACCATCTGGGTCAAACCGA	0.557													30	35					0	0	1	0	0	
MMRN1	22915	broad.mit.edu	37	4	90857091	90857091	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:90857091A>G	uc003hst.2	+	6	2331	c.2260A>G	c.(2260-2262)ACT>GCT	p.T754A	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.T496A	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	754					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GACTTTAAGTACTATTAAGGA	0.323													16	38					0	0	1	0	0	
GRID2	2895	broad.mit.edu	37	4	94376916	94376916	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:94376916G>A	uc011cdt.1	+	11	1907	c.1649G>A	c.(1648-1650)CGA>CAA	p.R550Q	GRID2_uc011cdu.1_Missense_Mutation_p.R455Q	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	550	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTACTACTTCGAAGGGCTGAA	0.483													35	74					0	0	1	0	0	
BMPR1B	658	broad.mit.edu	37	4	96052573	96052573	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:96052573C>T	uc003htm.3	+	10	1260	c.986C>T	c.(985-987)GCC>GTC	p.A329V	BMPR1B_uc010ilb.2_Missense_Mutation_p.A329V|BMPR1B_uc003htn.3_Missense_Mutation_p.A329V	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	329	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CCAGCAATTGCCCATCGAGAT	0.393													29	61					0	0	1	0	0	
METAP1	23173	broad.mit.edu	37	4	99960602	99960602	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:99960602C>T	uc003huf.3	+	5	535	c.418C>T	c.(418-420)CGA>TGA	p.R140*	METAP1_uc003hug.2_RNA	NM_015143	NP_055958	P53582	AMPM1_HUMAN	methionyl aminopeptidase 1	140					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis|regulation of translation	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;3.12e-07)		AGAAGGGATGCGACTTGTATG	0.363													15	49					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104065724	104065724	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:104065724T>C	uc003hxb.1	-	33	4999	c.4909A>G	c.(4909-4911)AAT>GAT	p.N1637D	CENPE_uc003hxc.1_Missense_Mutation_p.N1612D	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1637	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGAGTCTCATTGACAGCTGTC	0.328													13	31					0	0	1	0	0	
SEC24B	10427	broad.mit.edu	37	4	110384496	110384496	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:110384496C>T	uc003hzk.2	+	2	628	c.573C>T	c.(571-573)GCC>GCT	p.A191A	SEC24B_uc003hzl.2_Silent_p.A191A|SEC24B_uc011cfp.1_Silent_p.A222A|SEC24B_uc011cfq.1_Silent_p.A191A|SEC24B_uc011cfr.1_Silent_p.A191A	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	191					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TTTCTAATGCCGCGTATCCTA	0.453													65	149					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126370871	126370871	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:126370871T>C	uc003ifj.3	+	9	8700	c.8700T>C	c.(8698-8700)GAT>GAC	p.D2900D	FAT4_uc011cgp.1_Silent_p.D1198D|FAT4_uc003ifi.1_Silent_p.D378D	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2900	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGATCCTGATGAGGGATCAA	0.358													33	79					0	0	1	0	0	
C4orf49	84709	broad.mit.edu	37	4	140188117	140188117	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:140188117A>G	uc003ihr.1	-	4	539	c.359T>C	c.(358-360)GTA>GCA	p.V120A		NM_032623	NP_116012	Q8TDB4	CD049_HUMAN	ovary-specific acidic protein	120						integral to membrane				central_nervous_system(1)|skin(1)	2						TTCAGCATCTACCACCTCAGC	0.478													60	124					0	0	1	0	0	
SH3D19	152503	broad.mit.edu	37	4	152069209	152069209	+	Silent	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:152069209A>T	uc010ipl.1	-	11	2197	c.1107T>A	c.(1105-1107)TCT>TCA	p.S369S	SH3D19_uc003imb.2_Silent_p.S147S|SH3D19_uc003imc.2_Silent_p.S333S|SH3D19_uc003ime.2_Silent_p.S369S|SH3D19_uc010ipm.2_Silent_p.S369S	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	369					cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GATCCATGTCAGAAGAGGATC	0.453													28	55					0	0	1	0	0	
FSTL5	56884	broad.mit.edu	37	4	162307519	162307519	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:162307519A>G	uc003iqh.2	-	16	2360	c.1924T>C	c.(1924-1926)TTG>CTG	p.L642L	FSTL5_uc003iqi.2_Silent_p.L641L|FSTL5_uc010iqv.2_Silent_p.L632L|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	642						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TAGTCCTTCAAGTTAATTGTC	0.393													16	28					0	0	1	0	0	
TRIM61	391712	broad.mit.edu	37	4	165891048	165891048	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:165891048C>T	uc003iqw.2	-	3	718	c.107G>A	c.(106-108)TGT>TAT	p.C36Y		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	36	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		GCAGGAGAGACAGAAGTTATG	0.493													14	44					0	0	1	0	0	
KLHL2	11275	broad.mit.edu	37	4	166238988	166238988	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:166238988A>G	uc003irb.2	+	14	1879	c.1620A>G	c.(1618-1620)GCA>GCG	p.A540A	KLHL2_uc011cjm.1_Silent_p.A544A|KLHL2_uc003irc.2_Silent_p.A452A|KLHL2_uc010ira.2_Silent_p.A193A	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	540	Kelch 5.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		GAGTTTGTGCAGTTAATGGTC	0.348													20	56					0	0	1	0	0	
IRF2	3660	broad.mit.edu	37	4	185310135	185310135	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:185310135C>T	uc003iwf.3	-	9	1027	c.827G>A	c.(826-828)GGC>GAC	p.G276D		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	276					blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		GGACGCCATGCCGGGCAGCAG	0.552													47	98					0	0	1	0	0	
KIAA1430	57587	broad.mit.edu	37	4	186112044	186112044	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:186112044A>T	uc003ixf.3	-	2	454	c.307T>A	c.(307-309)TTG>ATG	p.L103M	KIAA1430_uc003ixg.2_Missense_Mutation_p.L103M	NM_020827	NP_065878	Q9P2B7	K1430_HUMAN	hypothetical protein LOC57587	103											0		all_lung(41;1.19e-13)|Lung NSC(41;3.16e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00872)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;9.44e-26)|Epithelial(43;2.64e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.66e-11)|Colorectal(24;6.03e-05)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000331)|COAD - Colon adenocarcinoma(29;0.000427)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00924)|READ - Rectum adenocarcinoma(43;0.165)		ACATCACACAATTTTTTTGAT	0.368													6	17					0	0	1	0	0	
MTNR1A	4543	broad.mit.edu	37	4	187454886	187454886	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:187454886G>T	uc003izd.1	-	2	1028	c.1010C>A	c.(1009-1011)CCA>CAA	p.P337Q		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	337	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GGTCATCAGTGGAGACGGTTT	0.493													43	66					3.38236e-24	3.83845e-24	1	1	0	
FAT1	2195	broad.mit.edu	37	4	187534385	187534385	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:187534385G>A	uc003izf.2	-	13	9529	c.9341C>T	c.(9340-9342)ACG>ATG	p.T3114M		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3114	Extracellular (Potential).|Cadherin 28.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATCTTCTAGCGTGAGCACAAT	0.522										HNSCC(5;0.00058)			4	76					0	0	1	0	0	
TERT	7015	broad.mit.edu	37	5	1255409	1255409	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:1255409C>A	uc003jcb.1	-	14	3208	c.3150G>T	c.(3148-3150)AAG>AAT	p.K1050N	TERT_uc003jbz.1_Missense_Mutation_p.K246N|TERT_uc003jca.1_Missense_Mutation_p.K1038N|TERT_uc003jcc.1_Missense_Mutation_p.K987N|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1050	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TACCTGCGTTCTTGGCTTTCA	0.542									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				5	21					0.000602214	0.000615077	1	1	0	
SLC6A3	6531	broad.mit.edu	37	5	1422074	1422074	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:1422074G>A	uc003jck.2	-	5	830	c.709C>T	c.(709-711)CGG>TGG	p.R237W		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	237	Extracellular (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGCTGCCACCGCGGAGGCCCC	0.657													42	61					0	0	1	0	0	
KIAA0947	23379	broad.mit.edu	37	5	5466528	5466528	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:5466528G>A	uc003jdm.3	+	14	6196	c.5974G>A	c.(5974-5976)GCC>ACC	p.A1992T		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1992										ovary(1)|central_nervous_system(1)	2						TTACATTCACGCCCTCTGCAG	0.398													9	32					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13919426	13919426	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:13919426C>T	uc003jfd.2	-	7	876	c.834G>A	c.(832-834)GCG>GCA	p.A278A	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	278	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAACGTCATCCGCTTCCTTCA	0.493									Kartagener_syndrome				50	119					0	0	1	0	0	
FBXL7	23194	broad.mit.edu	37	5	15928475	15928475	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:15928475C>T	uc003jfn.1	+	3	1085	c.604C>T	c.(604-606)CGA>TGA	p.R202*		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	202	LRR 2.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCTCACAGACCGAGGGCTGTA	0.597													8	24					0	0	1	0	0	
RNASEN	29102	broad.mit.edu	37	5	31407020	31407020	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:31407020C>T	uc003jhg.2	-	33	4246	c.3887G>A	c.(3886-3888)CGA>CAA	p.R1296Q	RNASEN_uc003jhh.2_Missense_Mutation_p.R1259Q	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	1296	Necessary for interaction with DGCR8 and pri-miRNA processing activity.|DRBM.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						AGTGTAGGTTCGGGCATGGGA	0.418													14	38					0	0	1	0	0	
RNASEN	29102	broad.mit.edu	37	5	31526886	31526886	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:31526886G>A	uc003jhg.2	-	4	513	c.154C>T	c.(154-156)CAA>TAA	p.Q52*	RNASEN_uc003jhh.2_Nonsense_Mutation_p.Q52*|RNASEN_uc003jhi.2_Nonsense_Mutation_p.Q52*|RNASEN_uc010iui.1_Nonsense_Mutation_p.Q43*	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	52	Pro-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						GGTTCATATTGATATTGCACA	0.557													7	19					0	0	1	0	0	
C5orf42	65250	broad.mit.edu	37	5	37164384	37164384	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:37164384C>T	uc011cpa.1	-	37	7810	c.7579G>A	c.(7579-7581)GTT>ATT	p.V2527I	C5orf42_uc011coy.1_Missense_Mutation_p.V1027I|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.V1602I	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2527										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			CCAAAAGGAACGTCGAAGTCA	0.308													11	30					0	0	1	0	0	
FYB	2533	broad.mit.edu	37	5	39202605	39202605	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:39202605G>A	uc003jls.2	-	1	525	c.458C>T	c.(457-459)CCG>CTG	p.P153L	FYB_uc003jlt.2_Missense_Mutation_p.P153L|FYB_uc003jlu.2_Missense_Mutation_p.P153L|FYB_uc011cpl.1_Missense_Mutation_p.P163L	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	153					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CCCAGATTTCGGGCCTAGTGG	0.453													37	60					0	0	1	0	0	
FGF10	2255	broad.mit.edu	37	5	44388550	44388550	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:44388550A>C	uc003jog.1	-	1	235	c.235T>G	c.(235-237)TGG>GGG	p.W79G		NM_004465	NP_004456	O15520	FGF10_HUMAN	fibroblast growth factor 10 precursor	79					actin cytoskeleton reorganization|activation of MAPK activity|bud outgrowth involved in lung branching|ERK1 and ERK2 cascade|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|insulin receptor signaling pathway|lacrimal gland development|lung saccule development|mesonephros development|negative regulation of cell cycle arrest|positive regulation of ATPase activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of DNA repair|positive regulation of DNA replication|positive regulation of epithelial cell migration|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of ERK1 and ERK2 cascade|positive regulation of hair follicle cell proliferation|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of lymphocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of urothelial cell proliferation|protein localization at cell surface|radial glial cell differentiation|regulation of saliva secretion|response to protein stimulus|secretion by lung epithelial cell involved in lung growth|tear secretion|thymus development|urothelial cell proliferation	cell surface|extracellular space|nucleus|plasma membrane	chemoattractant activity|growth factor activity|heparin binding|type 2 fibroblast growth factor receptor binding			lung(3)	3	Lung NSC(6;1.12e-06)					AGCTTTCTCCAGCGGACATCT	0.517													17	42					0	0	1	0	0	
PLK2	10769	broad.mit.edu	37	5	57753096	57753096	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:57753096G>A	uc003jrn.2	-	7	1047	c.920C>T	c.(919-921)GCC>GTC	p.A307V		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	307	Protein kinase.				positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		TAAGTGCTTGGCAGGAGCCAG	0.438													14	23					0	0	1	0	0	
ADAMTS6	11174	broad.mit.edu	37	5	64466574	64466574	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:64466574C>T	uc003jtp.2	-	24	3928	c.3114G>A	c.(3112-3114)CAG>CAA	p.Q1038Q	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1038	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TTCTCATCTGCTGTCCAAGGC	0.413													22	40					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70812075	70812075	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:70812075A>T	uc003kbp.1	+	21	5100	c.4837A>T	c.(4837-4839)ACT>TCT	p.T1613S	BDP1_uc003kbo.2_Missense_Mutation_p.T1613S	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1613					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AAAAGATGAAACTGAAAAGAA	0.328													4	18					0	0	1	0	0	
PTCD2	79810	broad.mit.edu	37	5	71638851	71638851	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:71638851C>T	uc003kcb.2	+	8	826	c.816C>T	c.(814-816)TGC>TGT	p.C272C	PTCD2_uc011csf.1_Silent_p.C82C|PTCD2_uc003kcc.2_Silent_p.C120C|PTCD2_uc011csg.1_Silent_p.C100C|PTCD2_uc011csh.1_Silent_p.C163C|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	272											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		GCATAGCCTGCATTAATTTAA	0.269													10	28					0	0	1	0	0	
PAPD4	167153	broad.mit.edu	37	5	78964728	78964728	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:78964728C>T	uc010jae.1	+	13	1503	c.1085C>T	c.(1084-1086)CCT>CTT	p.P362L	PAPD4_uc003kgb.2_Missense_Mutation_p.P362L|PAPD4_uc010jaf.1_Missense_Mutation_p.P362L|PAPD4_uc003kga.2_Missense_Mutation_p.P358L|PAPD4_uc003kfz.2_Missense_Mutation_p.P319L	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	362					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		TCTTTTAGTCCTGCTATACAG	0.393													52	93					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79031946	79031946	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:79031946C>T	uc003kgc.2	+	2	7430	c.7358C>T	c.(7357-7359)CCA>CTA	p.P2453L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2453						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TCTGTTAGTCCAACTGAGAAG	0.368													17	27					0	0	1	0	0	
GPR98	84059	broad.mit.edu	37	5	89949385	89949385	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:89949385G>A	uc003kju.2	+	20	4090	c.3994G>A	c.(3994-3996)GGA>AGA	p.G1332R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1332	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTACTTTACCGGACTAGAGGG	0.443													9	13					0	0	1	0	0	
WDR36	134430	broad.mit.edu	37	5	110446959	110446959	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:110446959A>C	uc003kpd.2	+	15	1983	c.1866A>C	c.(1864-1866)CAA>CAC	p.Q622H	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	622	WD 8.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		CTGGACACCAAGGCCAAATAA	0.373													49	96					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112176209	112176209	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:112176209C>T	uc010jby.2	+	16	5298	c.4918C>T	c.(4918-4920)CGG>TGG	p.R1640W	APC_uc011cvt.1_Missense_Mutation_p.R1622W|APC_uc003kpz.3_Missense_Mutation_p.R1640W|APC_uc003kpy.3_Missense_Mutation_p.R1640W|APC_uc010jbz.2_Missense_Mutation_p.R1357W|APC_uc010jca.2_Missense_Mutation_p.R940W	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1640	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TGATATGCCACGGGTGTATTG	0.443		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			22	72					0	0	1	0	0	
SEMA6A	57556	broad.mit.edu	37	5	115782634	115782634	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:115782634T>A	uc010jck.2	-	19	3477	c.2768A>T	c.(2767-2769)AAC>ATC	p.N923I	SEMA6A_uc003krx.3_Missense_Mutation_p.N940I|SEMA6A_uc011cwe.1_Missense_Mutation_p.N302I|SEMA6A_uc003krv.3_Missense_Mutation_p.N350I|SEMA6A_uc003krw.3_Missense_Mutation_p.N400I|SEMA6A_uc010jcj.2_Missense_Mutation_p.N467I	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	923	Cytoplasmic (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		CGTGAGCGAGTTCGTGGGGTA	0.562													15	51					0	0	1	0	0	
ALDH7A1	501	broad.mit.edu	37	5	125912806	125912806	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:125912806G>A	uc003ktx.2	-	6	807	c.615C>T	c.(613-615)AAC>AAT	p.N205N	ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Silent_p.N232N|ALDH7A1_uc003ktz.2_Silent_p.N232N	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	205					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	TGGCGATGGCGTTGTTCCAAC	0.448													15	35					0	0	1	0	0	
ISOC1	51015	broad.mit.edu	37	5	128440935	128440935	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:128440935G>T	uc003kva.2	+	3	505	c.487G>T	c.(487-489)GGT>TGT	p.G163C		NM_016048	NP_057132	Q96CN7	ISOC1_HUMAN	isochorismatase domain containing 1	163						peroxisome	catalytic activity				0		all_cancers(142;0.0813)|Prostate(80;0.0865)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.138)|OV - Ovarian serous cystadenocarcinoma(64;0.164)		ATACCCTAAAGGTCTTGGGAG	0.368													8	38					1.06961e-07	1.12749e-07	1	1	0	
CHSY3	337876	broad.mit.edu	37	5	129521238	129521238	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:129521238A>G	uc003kvd.2	+	3	2403	c.2403A>G	c.(2401-2403)CAA>CAG	p.Q801Q		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	801	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		CCTCAATACAAGGCTGGGGAC	0.403													26	60					0	0	1	0	0	
RAPGEF6	51735	broad.mit.edu	37	5	130828390	130828390	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:130828390T>C	uc003kvn.1	-	14	1822	c.1616A>G	c.(1615-1617)GAG>GGG	p.E539G	RAPGEF6_uc003kvp.1_Missense_Mutation_p.E589G|RAPGEF6_uc003kvo.1_Missense_Mutation_p.E539G|RAPGEF6_uc010jdi.1_Missense_Mutation_p.E539G|RAPGEF6_uc010jdj.1_Missense_Mutation_p.E539G|RAPGEF6_uc003kvq.2_Missense_Mutation_p.E256G|RAPGEF6_uc003kvr.2_Missense_Mutation_p.E539G|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.E539G	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	539	PDZ.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		TAGAGGGGACTCGCGGGAAGC	0.468													25	49					0	0	1	0	0	
RAPGEF6	51735	broad.mit.edu	37	5	130828445	130828445	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:130828445C>T	uc003kvn.1	-	14	1767	c.1561G>A	c.(1561-1563)GCC>ACC	p.A521T	RAPGEF6_uc003kvp.1_Missense_Mutation_p.A571T|RAPGEF6_uc003kvo.1_Missense_Mutation_p.A521T|RAPGEF6_uc010jdi.1_Missense_Mutation_p.A521T|RAPGEF6_uc010jdj.1_Missense_Mutation_p.A521T|RAPGEF6_uc003kvq.2_Missense_Mutation_p.A238T|RAPGEF6_uc003kvr.2_Missense_Mutation_p.A521T|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.A521T	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	521	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		GCAGCACAGGCAATATTCAAT	0.413													19	36					0	0	1	0	0	
REEP2	51308	broad.mit.edu	37	5	137780982	137780982	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:137780982C>T	uc003lcz.2	+	6	599	c.477C>T	c.(475-477)GAC>GAT	p.D159D	REEP2_uc003lda.2_Silent_p.D161D|REEP2_uc011cyt.1_Silent_p.D120D	NM_016606	NP_057690	Q9BRK0	REEP2_HUMAN	receptor accessory protein 2	159						integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TGATCCGGGACGAGGACGCAC	0.697													26	41					0	0	1	0	0	
EGR1	1958	broad.mit.edu	37	5	137803521	137803521	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:137803521G>A	uc003ldb.1	+	2	1653	c.1383G>A	c.(1381-1383)CCG>CCA	p.P461P	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	461					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			atccatccccggccaccacct	0.154													17	56					0	0	1	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138269735	138269735	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:138269735C>T	uc003ldh.2	+	18	2773	c.2678C>T	c.(2677-2679)CCG>CTG	p.P893L	CTNNA1_uc011cyx.1_Missense_Mutation_p.P790L|CTNNA1_uc011cyy.1_Missense_Mutation_p.P770L|CTNNA1_uc003ldi.2_Missense_Mutation_p.P591L|CTNNA1_uc003ldj.2_3'UTR|CTNNA1_uc003ldl.2_Missense_Mutation_p.P523L	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	893					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CACGTGAACCCGGTGCAGGCC	0.542													15	32					0	0	1	0	0	
PCDHA5	56143	broad.mit.edu	37	5	140202594	140202594	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140202594C>A	uc003lhl.2	+	1	1234	c.1234C>A	c.(1234-1236)CTG>ATG	p.L412M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.L412M|PCDHA5_uc003lhj.1_Missense_Mutation_p.L412M	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	412	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACAGCGCCCTGGACCGCGA	0.642													54	174					1.13709e-37	1.30307e-37	1	1	0	
PCDHA7	56141	broad.mit.edu	37	5	140215588	140215588	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140215588G>T	uc003lhq.2	+	1	1620	c.1620G>T	c.(1618-1620)GCG>GCT	p.A540A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.A540A	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	540	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCGATGCGGGCGTGCCGC	0.682													73	140					9.2564e-22	1.04594e-21	1	1	0	
PCDHA11	56138	broad.mit.edu	37	5	140250524	140250524	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140250524G>A	uc003lia.2	+	1	2694	c.1836G>A	c.(1834-1836)CCG>CCA	p.P612P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.P612P	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	612	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATTGCAGCCGGCGGCGGGCG	0.682													37	67					0	0	1	0	0	
PCDHB4	56131	broad.mit.edu	37	5	140501700	140501700	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140501700C>T	uc003lip.1	+	1	120	c.120C>T	c.(118-120)AGC>AGT	p.S40S		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	40	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAACAGAGAGCGGCTCCTTTG	0.537													21	56					0	0	1	0	0	
PCDHB10	56126	broad.mit.edu	37	5	140573523	140573523	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140573523C>T	uc003lix.2	+	1	1572	c.1398C>T	c.(1396-1398)CCC>CCT	p.P466P		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	466	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACAGCCCCGCCCTGCACA	0.652													76	244					0	0	1	0	0	
PCDHGB2	56103	broad.mit.edu	37	5	140741226	140741226	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140741226C>T	uc003ljs.1	+	1	1524	c.1524C>T	c.(1522-1524)AGC>AGT	p.S508S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Silent_p.S508S|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	508	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCGTGAGCGCGCAGAGCG	0.662													20	52					0	0	1	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140762765	140762765	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:140762765C>T	uc003lka.1	+	1	299	c.299C>T	c.(298-300)GCG>GTG	p.A100V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.A100V	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	100	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCAGAGTGCGCGGTGTCTG	0.483													14	45					0	0	1	0	0	
SPINK5	11005	broad.mit.edu	37	5	147480951	147480951	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:147480951A>G	uc003lox.2	+	14	1327	c.1254A>G	c.(1252-1254)GAA>GAG	p.E418E	SPINK5_uc010jgs.1_Silent_p.E390E|SPINK5_uc010jgr.2_Silent_p.E399E|SPINK5_uc003low.2_Silent_p.E418E|SPINK5_uc003loy.2_Silent_p.E418E	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	418	Kazal-like 6.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAGAAGGAAGGTAAATCAA	0.378													9	21					0	0	1	0	0	
SH3TC2	79628	broad.mit.edu	37	5	148422396	148422396	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:148422396G>A	uc003lpu.2	-	5	542	c.390C>T	c.(388-390)TAC>TAT	p.Y130Y	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lps.2_5'Flank|SH3TC2_uc003lpt.2_Translation_Start_Site|SH3TC2_uc010jgx.2_Intron|SH3TC2_uc003lpv.1_Translation_Start_Site|SH3TC2_uc011dbz.1_Silent_p.Y15Y	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	130							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACATGGATACGTAGCCTAAGA	0.423													22	56					0	0	1	0	0	
GM2A	2760	broad.mit.edu	37	5	150646383	150646383	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:150646383G>A	uc003ltr.3	+	3	500	c.335G>A	c.(334-336)TGT>TAT	p.C112Y	GM2A_uc011dcs.1_RNA|GM2A_uc011dcr.1_Missense_Mutation_p.C112Y|GM2A_uc003ltt.1_Missense_Mutation_p.C44Y|GM2A_uc003ltu.1_5'Flank	NM_000405	NP_000396	P17900	SAP3_HUMAN	GM2 ganglioside activator precursor	112						lysosome|nucleolus	sphingolipid activator protein activity				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAACACTTCTGTGATGTGCTT	0.498													31	59					0	0	1	0	0	
CYFIP2	26999	broad.mit.edu	37	5	156752567	156752567	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:156752567A>G	uc003lwq.2	+	19	2041	c.1903A>G	c.(1903-1905)ATC>GTC	p.I635V	CYFIP2_uc011ddn.1_Missense_Mutation_p.I609V|CYFIP2_uc011ddo.1_Missense_Mutation_p.I439V|CYFIP2_uc003lwr.2_Missense_Mutation_p.I635V|CYFIP2_uc003lws.2_Missense_Mutation_p.I635V|CYFIP2_uc003lwt.2_Missense_Mutation_p.I538V|CYFIP2_uc011ddp.1_Missense_Mutation_p.I369V	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	660					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGCCGACGAATCCAGTTCCC	0.527													16	18					0	0	1	0	0	
ODZ2	57451	broad.mit.edu	37	5	167545433	167545433	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:167545433C>A	uc010jjd.2	+	10	1950	c.1950C>A	c.(1948-1950)TCC>TCA	p.S650S	ODZ2_uc003lzq.2_Silent_p.S529S|ODZ2_uc003lzr.3_Silent_p.S418S|ODZ2_uc003lzt.3_Silent_p.S14S|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCCACGGCTCCTGCATTGATG	0.617													72	128					1.48005e-37	1.69424e-37	1	1	0	
CDHR2	54825	broad.mit.edu	37	5	176004677	176004677	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:176004677G>A	uc003mem.1	+	14	1456	c.1390G>A	c.(1390-1392)GCC>ACC	p.A464T	CDHR2_uc003men.1_Missense_Mutation_p.A464T	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	464	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTTCTCCGTCGCCATGGTGAC	0.637													22	45					0	0	1	0	0	
UIMC1	51720	broad.mit.edu	37	5	176397788	176397788	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:176397788C>T	uc011dfp.1	-	4	479	c.312G>A	c.(310-312)GAG>GAA	p.E104E	UIMC1_uc003mfc.1_5'UTR|UIMC1_uc003mfd.1_5'UTR|UIMC1_uc003mfg.1_Silent_p.E104E|UIMC1_uc003mfh.1_Silent_p.E104E|UIMC1_uc010jkj.1_Silent_p.E104E|UIMC1_uc011dfq.1_Silent_p.E104E|UIMC1_uc003mff.1_5'Flank	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	104	Necessary for interaction with NR6A1 N- terminus.|UIM 2.|Glu-rich.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTCTTCTTCCTCCTCCTGGC	0.438													39	69					0	0	1	0	0	
NSD1	64324	broad.mit.edu	37	5	176710894	176710894	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:176710894G>A	uc003mfr.3	+	20	6254	c.6116G>A	c.(6115-6117)CGT>CAT	p.R2039H	NSD1_uc003mft.3_Missense_Mutation_p.R1770H|NSD1_uc011dfx.1_Missense_Mutation_p.R1687H	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2039	SET.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GGAGATACCCGTGTAGGCCTT	0.423			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			45	89					0	0	1	0	0	
DBN1	1627	broad.mit.edu	37	5	176885651	176885651	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:176885651T>C	uc003mgy.2	-	12	1356	c.1184A>G	c.(1183-1185)CAG>CGG	p.Q395R	DBN1_uc011dga.1_Missense_Mutation_p.Q127R|DBN1_uc003mgx.2_Missense_Mutation_p.Q397R|DBN1_uc010jkn.1_Missense_Mutation_p.Q345R|DBN1_uc003mgz.1_Missense_Mutation_p.Q378R	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	395					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCCAGGCCTGAGGGGCTGC	0.662													6	7					0	0	1	0	0	
RUFY1	80230	broad.mit.edu	37	5	178994485	178994485	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:178994485C>T	uc003mka.1	+	4	626	c.626C>T	c.(625-627)GCG>GTG	p.A209V	RUFY1_uc003mkb.1_Missense_Mutation_p.A101V|RUFY1_uc003mkc.1_Missense_Mutation_p.A101V	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	209	RUN.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGAGGCCGAGCGTGGCTTTAT	0.403										HNSCC(44;0.11)			21	24					0	0	1	0	0	
DSP	1832	broad.mit.edu	37	6	7569500	7569500	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:7569500G>A	uc003mxp.1	+	12	1780	c.1501G>A	c.(1501-1503)GTT>ATT	p.V501I	DSP_uc003mxq.1_Missense_Mutation_p.V501I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	501	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CCCGGGAGGCGTTGACATGCT	0.562													38	68					0	0	1	0	0	
DSP	1832	broad.mit.edu	37	6	7580631	7580631	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:7580631G>T	uc003mxp.1	+	23	4487	c.4208G>T	c.(4207-4209)AGG>ATG	p.R1403M	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1403	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CGAGAAAACAGGAGCTTATCT	0.488													35	53					1.99505e-19	2.2447e-19	1	1	0	
SNRNP48	154007	broad.mit.edu	37	6	7595261	7595261	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:7595261T>C	uc003mxr.2	+	4	392	c.333T>C	c.(331-333)AAT>AAC	p.N111N	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	111					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						TTTTGACAGATAAGGACTCAC	0.333													20	19					0	0	1	0	0	
RANBP9	10048	broad.mit.edu	37	6	13634728	13634728	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:13634728G>A	uc003nbb.2	-	11	1789	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F	RANBP9_uc003nba.2_Missense_Mutation_p.S236F	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	577					axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			GAAACCATTGGATGAAGTTTC	0.338													11	36					0	0	1	0	0	
JARID2	3720	broad.mit.edu	37	6	15520474	15520474	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:15520474T>C	uc003nbj.2	+	18	3977	c.3733T>C	c.(3733-3735)TCA>CCA	p.S1245P	JARID2_uc011div.1_Missense_Mutation_p.S1073P	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	1245	Poly-Ser.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				tgcttcgagctcatcatgaag	0.343													15	55					0	0	1	0	0	
HIST1H1E	3008	broad.mit.edu	37	6	26156941	26156941	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:26156941A>G	uc003ngq.2	+	1	383	c.323A>G	c.(322-324)AAC>AGC	p.N108S	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	108	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						TTCAAACTCAACAAGAAGGCG	0.612													17	46					0	0	1	0	0	
ZSCAN16	80345	broad.mit.edu	37	6	28093420	28093420	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:28093420C>T	uc003nkm.2	+	2	299	c.199C>T	c.(199-201)CGT>TGT	p.R67C	uc010jqw.1_Intron|uc003nkk.1_RNA|uc003nkl.1_Intron|ZSCAN16_uc011dky.1_Missense_Mutation_p.R67C	NM_025231	NP_079507	Q9H4T2	ZSC16_HUMAN	zinc finger and SCAN domain containing 16	67	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1						GGAGCTCTGCCGTCAGTGGCT	0.532													69	160					0	0	1	0	0	
SCAND3	114821	broad.mit.edu	37	6	28543300	28543300	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:28543300C>T	uc003nlo.2	-	3	1800	c.1182G>A	c.(1180-1182)TTG>TTA	p.L394L		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	394	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGATAATGCAAAATAAATC	0.333													26	63					0	0	1	0	0	
OR10C1	442194	broad.mit.edu	37	6	29408447	29408447	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:29408447C>T	uc011dlp.1	+	1	655	c.655C>T	c.(655-657)CGT>TGT	p.R219C	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCCTACGGGCGTATCCTCGT	0.582													65	118					0	0	1	0	0	
C6orf47	57827	broad.mit.edu	37	6	31627249	31627249	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:31627249C>T	uc003nvm.1	-	1	1301	c.476G>A	c.(475-477)CGG>CAG	p.R159Q		NM_021184	NP_067007	O95873	CF047_HUMAN	G4 protein	159										ovary(1)	1						TGGTTCCCCCCGCAGCCAGCC	0.642													29	61					0	0	1	0	0	
BTNL2	56244	broad.mit.edu	37	6	32363934	32363934	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:32363934G>A	uc003obg.1	-	5	960	c.960C>T	c.(958-960)GAC>GAT	p.D320D	BTNL2_uc010jty.1_Silent_p.D43D|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Silent_p.D110D	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	320	Extracellular (Potential).|Ig-like V-type 3.					integral to membrane				central_nervous_system(1)	1						GTCTGCCCTCGTCAATGGCGT	0.547													26	26					0	0	1	0	0	
BRD2	6046	broad.mit.edu	37	6	32947844	32947844	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:32947844C>A	uc003ocn.3	+	11	3782	c.2081C>A	c.(2080-2082)TCC>TAC	p.S694Y	BRD2_uc003ocq.3_Missense_Mutation_p.S694Y|BRD2_uc003ocp.3_Missense_Mutation_p.S574Y|BRD2_uc010juh.2_Missense_Mutation_p.S729Y	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	694	ET.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						CTCAAGCCATCCACACTTAGA	0.468													22	40					4.35082e-09	4.66096e-09	1	1	0	
B3GALT4	8705	broad.mit.edu	37	6	33245676	33245676	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:33245676G>T	uc003odr.2	+	1	760	c.480G>T	c.(478-480)TGG>TGT	p.W160C		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	160	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						GGCTGAACTGGGCTGAGAAAC	0.597													28	77					7.01153e-11	7.59643e-11	1	1	0	
ITPR3	3710	broad.mit.edu	37	6	33608274	33608274	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:33608274C>T	uc011drk.1	+	2	322	c.103C>T	c.(103-105)CGC>TGC	p.R35C		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	35	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGTGGATGACCGCTGTGTGGT	0.632													61	115					0	0	1	0	0	
LEMD2	221496	broad.mit.edu	37	6	33740534	33740534	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:33740534C>A	uc011drm.1	-	9	1396	c.1383G>T	c.(1381-1383)TGG>TGT	p.W461C	LEMD2_uc010jvg.2_Missense_Mutation_p.W170C|LEMD2_uc011drl.1_Missense_Mutation_p.W159C|LEMD2_uc003ofe.2_Missense_Mutation_p.W159C	NM_181336	NP_851853	Q8NC56	LEMD2_HUMAN	LEM domain containing 2 isoform 1	461						integral to nuclear inner membrane				central_nervous_system(1)	1						CAGCTCGGTCCCAGACACGCT	0.627													13	21					7.93312e-07	8.32068e-07	1	1	0	
TCP11	6954	broad.mit.edu	37	6	35088313	35088313	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:35088313G>A	uc003okd.2	-	7	1046	c.865C>T	c.(865-867)CCC>TCC	p.P289S	TCP11_uc003ojz.1_Missense_Mutation_p.P214S|TCP11_uc003oka.2_Missense_Mutation_p.P214S|TCP11_uc003okb.2_Missense_Mutation_p.P213S|TCP11_uc003okc.2_Missense_Mutation_p.P213S|TCP11_uc011dsu.1_Missense_Mutation_p.P271S|TCP11_uc011dsv.1_Missense_Mutation_p.P238S|TCP11_uc011dsw.1_Missense_Mutation_p.P243S	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	276					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						GCCTCATTGGGAGAGGGGCCA	0.567													36	66					0	0	1	0	0	
DNAH8	1769	broad.mit.edu	37	6	38840716	38840716	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:38840716G>T	uc003ooe.1	+	49	7221	c.6621G>T	c.(6619-6621)GTG>GTT	p.V2207V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGGTCCTGTGGATGCCATCT	0.348													18	33					3.41278e-10	3.67477e-10	1	1	0	
DNAH8	1769	broad.mit.edu	37	6	38942265	38942265	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:38942265C>T	uc003ooe.1	+	83	12743	c.12143C>T	c.(12142-12144)CCG>CTG	p.P4048L	DNAH8_uc003oog.1_Missense_Mutation_p.P497L	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATGTGGAAGCCGATGCTTTAC	0.458													23	48					0	0	1	0	0	
LRFN2	57497	broad.mit.edu	37	6	40359938	40359938	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:40359938C>T	uc003oph.1	-	3	2579	c.2114G>A	c.(2113-2115)CGG>CAG	p.R705Q		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	705	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCTCCTGGCCCGGGCCGCAGG	0.726													10	12					0	0	1	0	0	
TBCC	6903	broad.mit.edu	37	6	42712855	42712855	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:42712855G>A	uc003osl.2	-	1	1030	c.957C>T	c.(955-957)GAC>GAT	p.D319D		NM_003192	NP_003183	Q15814	TBCC_HUMAN	beta-tubulin cofactor C	319	C-CAP/cofactor C-like.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|photoreceptor connecting cilium	chaperone binding|GTPase activity				0	Colorectal(47;0.196)		all cancers(41;0.00122)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.125)			AGTTAAAATCGTCAACATCGT	0.502													17	39					0	0	1	0	0	
KIAA0240	23506	broad.mit.edu	37	6	42796578	42796578	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:42796578G>A	uc003osn.1	+	6	658	c.507G>A	c.(505-507)ACG>ACA	p.T169T	KIAA0240_uc003osm.1_Silent_p.T169T|KIAA0240_uc011duw.1_Silent_p.T169T|KIAA0240_uc003oso.1_Silent_p.T169T|KIAA0240_uc003osp.1_Silent_p.T169T	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	169										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			TAGGGGTGACGCATGTGCCTG	0.473													47	109					0	0	1	0	0	
CUL7	9820	broad.mit.edu	37	6	43020085	43020085	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:43020085C>T	uc003otq.2	-	2	745	c.442G>A	c.(442-444)GCC>ACC	p.A148T	CUL7_uc011dvb.1_Missense_Mutation_p.A200T|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	148					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TCAATGCTGGCATAGGCGCTG	0.552													14	40					0	0	1	0	0	
CUL9	23113	broad.mit.edu	37	6	43192089	43192089	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:43192089A>G	uc003ouk.2	+	41	7535	c.7460A>G	c.(7459-7461)AAT>AGT	p.N2487S	CUL9_uc003oul.2_Missense_Mutation_p.N2459S|CUL9_uc010jyk.2_Missense_Mutation_p.N1639S|CUL9_uc003oun.2_Missense_Mutation_p.N282S	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2487					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						GAGCTGGACAATGACAGCTTC	0.547													16	30					0	0	1	0	0	
HMGCLL1	54511	broad.mit.edu	37	6	55443799	55443799	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:55443799G>A	uc003pcn.2	-	1	214	c.55C>T	c.(55-57)CGG>TGG	p.R19W	HMGCLL1_uc003pco.2_Missense_Mutation_p.R19W|HMGCLL1_uc010jzx.2_5'UTR|HMGCLL1_uc011dxc.1_Missense_Mutation_p.R19W|HMGCLL1_uc011dxd.1_Missense_Mutation_p.R19W|HMGCLL1_uc011dxe.1_Missense_Mutation_p.R19W|HMGCLL1_uc003pcp.2_Missense_Mutation_p.R19W	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	19							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			AGATGCTCCCGGAGAAGCTGC	0.682													6	15					0	0	1	0	0	
PHF3	23469	broad.mit.edu	37	6	64410356	64410356	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:64410356T>C	uc003pep.1	+	8	3125	c.3099T>C	c.(3097-3099)CAT>CAC	p.H1033H	PHF3_uc010kah.1_Silent_p.H847H|PHF3_uc003pen.2_Silent_p.H945H|PHF3_uc011dxs.1_Silent_p.H302H	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1033	TFIIS central.				multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AAAACAGACATGTAAGATTAT	0.338													15	30					0	0	1	0	0	
RNGTT	8732	broad.mit.edu	37	6	89616132	89616132	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:89616132C>T	uc003pmr.2	-	5	615	c.395G>A	c.(394-396)CGC>CAC	p.R132H	RNGTT_uc003pms.2_Missense_Mutation_p.R132H|RNGTT_uc011dzu.1_Missense_Mutation_p.R72H|RNGTT_uc003pmt.2_Missense_Mutation_p.R132H	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	132	TPase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		GAAACCAGTGCGATTGAAGCC	0.323													7	26					0	0	1	0	0	
PNRC1	10957	broad.mit.edu	37	6	89793839	89793839	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:89793839G>C	uc003pmv.2	+	2	1093	c.908G>C	c.(907-909)AGC>ACC	p.S303T	PNRC1_uc003pmx.2_Missense_Mutation_p.S118T	NM_006813	NP_006804	Q12796	PNRC1_HUMAN	proline-rich nuclear receptor coactivator 1	303					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0		all_cancers(76;3.64e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.102)		TGGATGGGAAGCACTGTTGAA	0.418										Multiple Myeloma(7;0.094)			30	50					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90461182	90461182	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:90461182G>C	uc003pnn.1	-	23	3311	c.3195C>G	c.(3193-3195)AAC>AAG	p.N1065K	MDN1_uc003pno.1_Missense_Mutation_p.N484K	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1065					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TATCTCTCAGGTTCAGCTTCA	0.488													19	29					0	0	1	0	0	
BACH2	60468	broad.mit.edu	37	6	90647937	90647937	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:90647937G>A	uc011eab.1	-	8	2778	c.1969C>T	c.(1969-1971)CGC>TGC	p.R657C	BACH2_uc003pnw.2_Missense_Mutation_p.R657C	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	657	Basic motif.					nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		GCCGCGATGCGGTTCTTGCTG	0.453													32	54					0	0	1	0	0	
SLC35F1	222553	broad.mit.edu	37	6	118228882	118228882	+	Translation_Start_Site	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:118228882C>A	uc003pxx.3	+	1	194	c.-7C>A	c.(-9--5)CTCTG>CTATG			NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1						transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		GCCTCAGCCTCTGCCGCGATG	0.637													8	6					1.12685e-05	1.16908e-05	1	1	0	
FAM184A	79632	broad.mit.edu	37	6	119345439	119345439	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:119345439C>T	uc003pyj.2	-	2	1047	c.699G>A	c.(697-699)ATG>ATA	p.M233I	FAM184A_uc003pyk.3_Missense_Mutation_p.M113I|FAM184A_uc003pyl.3_Missense_Mutation_p.M113I	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	233	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GCTCCTCAAGCATTTTGTTTA	0.418													19	46					0	0	1	0	0	
IFNGR1	3459	broad.mit.edu	37	6	137540418	137540418	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:137540418C>T	uc003qho.2	-	1	150	c.47G>A	c.(46-48)AGG>AAG	p.R16K	IFNGR1_uc011edm.1_5'Flank|IFNGR1_uc011edn.1_5'UTR	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	16					regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	CATCTCAGCCCTGCTCACACC	0.697													11	13					0	0	1	0	0	
TNFAIP3	7128	broad.mit.edu	37	6	138199749	138199749	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:138199749G>A	uc003qhr.2	+	7	1233	c.1167G>A	c.(1165-1167)ACG>ACA	p.T389T	TNFAIP3_uc003qhs.2_Silent_p.T389T	NM_006290	NP_006281	P21580	TNAP3_HUMAN	tumor necrosis factor, alpha-induced protein 3	389	Interaction with NAF1 (By similarity).|A20-type 1.				anti-apoptosis|apoptosis|B-1 B cell homeostasis|negative regulation of B cell activation|negative regulation of bone resorption|negative regulation of CD40 signaling pathway|negative regulation of endothelial cell apoptosis|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of interleukin-2 production|negative regulation of interleukin-6 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of osteoclast proliferation|negative regulation of protein ubiquitination|negative regulation of smooth muscle cell proliferation|negative regulation of toll-like receptor 2 signaling pathway|negative regulation of toll-like receptor 3 signaling pathway|negative regulation of tumor necrosis factor production|negative regulation of type I interferon production|positive regulation of protein catabolic process|protein K48-linked ubiquitination|protein K63-linked deubiquitination|protein oligomerization|regulation of defense response to virus by host|regulation of germinal center formation|regulation of vascular wound healing|tolerance induction to lipopolysaccharide	centrosome|cytosol|nucleus	caspase inhibitor activity|DNA binding|protease binding|protein self-association|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-protein ligase activity|ubiquitin-specific protease activity|zinc ion binding	p.0?(22)		haematopoietic_and_lymphoid_tissue(133)|lung(3)|ovary(1)	137	Breast(32;0.135)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000849)|OV - Ovarian serous cystadenocarcinoma(155;0.00468)		AATGTGAAACGCCCAACTGCC	0.527			D|N|F		marginal zone B-cell lymphomas|Hodgkin's lymphoma|primary mediastinal B cell lymphoma								6	120					0	0	1	0	0	
HIVEP2	3097	broad.mit.edu	37	6	143093660	143093660	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:143093660C>A	uc003qjd.2	-	5	2959	c.2216G>T	c.(2215-2217)AGG>ATG	p.R739M		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	739					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		AAATCCACTCCTGACTCCTTC	0.537													17	43					4.7546e-09	5.07801e-09	1	1	0	
SASH1	23328	broad.mit.edu	37	6	148761499	148761499	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:148761499G>A	uc003qme.1	+	4	817	c.342G>A	c.(340-342)TCG>TCA	p.S114S		NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	114							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		CGTAGGAGTCGCTTGGCTTCT	0.473													28	54					0	0	1	0	0	
KATNA1	11104	broad.mit.edu	37	6	149916287	149916287	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:149916287T>C	uc003qmr.1	-	10	1406	c.1361A>G	c.(1360-1362)CAC>CGC	p.H454R	KATNA1_uc003qms.2_Missense_Mutation_p.H454R|KATNA1_uc003qmt.2_3'UTR	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	454					cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		TGTAGGCATGTGCATTTCTTC	0.403													21	46					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152621778	152621778	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:152621778G>A	uc010kiw.2	-	93	18282	c.17680C>T	c.(17680-17682)CAG>TAG	p.Q5894*	SYNE1_uc010kiv.2_Nonsense_Mutation_p.Q418*|SYNE1_uc003qos.3_Nonsense_Mutation_p.Q418*|SYNE1_uc003qot.3_Nonsense_Mutation_p.Q5823*|SYNE1_uc003qou.3_Nonsense_Mutation_p.Q5894*|SYNE1_uc010kiy.1_Intron	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5894	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GGAGGTACCTGGTTAACAGAA	0.502										HNSCC(10;0.0054)			14	28					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152640107	152640107	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:152640107C>A	uc010kiw.2	-	85	16882	c.16280G>T	c.(16279-16281)AGC>ATC	p.S5427I	SYNE1_uc010kiv.2_5'Flank|SYNE1_uc003qos.3_5'Flank|SYNE1_uc003qot.3_Missense_Mutation_p.S5356I|SYNE1_uc003qou.3_Missense_Mutation_p.S5427I|SYNE1_uc010kiz.2_Missense_Mutation_p.S1182I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5427	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GAGTTCCTGGCTCGTGGCCTT	0.373										HNSCC(10;0.0054)			8	28					1.12685e-05	1.16908e-05	1	1	0	
ARID1B	57492	broad.mit.edu	37	6	157528046	157528046	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:157528046G>T	uc003qqn.2	+	20	5869	c.5717G>T	c.(5716-5718)AGG>ATG	p.R1906M	ARID1B_uc003qqo.2_Missense_Mutation_p.R1866M|ARID1B_uc003qqp.2_Missense_Mutation_p.R1853M	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1911					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GACGAGCCCAGGAGCCGAGAC	0.557													9	127					5.4927e-09	5.85443e-09	1	1	0	
T	6862	broad.mit.edu	37	6	166580164	166580164	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:166580164C>T	uc003quu.1	-	3	880	c.387G>A	c.(385-387)TCG>TCA	p.S129S	T_uc003qut.1_Silent_p.S129S|T_uc003quv.1_Silent_p.S129S	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	129	T-box.				anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		CGAAGTTGGGCGAGTCGGGGT	0.657									Chordoma_Familial_Clustering_of				26	42					0	0	1	0	0	
TBP	6908	broad.mit.edu	37	6	170871064	170871064	+	Silent	SNP	G	A	A	rs112748399		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:170871064G>A	uc003qxt.2	+	3	472	c.240G>A	c.(238-240)CAG>CAA	p.Q80Q	TBP_uc003qxu.2_Silent_p.Q80Q|TBP_uc011ehf.1_Silent_p.Q60Q|TBP_uc011ehg.1_Silent_p.Q80Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	80	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.164													6	37					0	0	1	0	0	
TBP	6908	broad.mit.edu	37	6	170871070	170871070	+	Silent	SNP	G	A	A	rs142508797	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:170871070G>A	uc003qxt.2	+	3	478	c.246G>A	c.(244-246)CAG>CAA	p.Q82Q	TBP_uc003qxu.2_Silent_p.Q82Q|TBP_uc011ehf.1_Silent_p.Q62Q|TBP_uc011ehg.1_Silent_p.Q82Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	82	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.174													9	28					0	0	1	0	0	
FAM20C	56975	broad.mit.edu	37	7	195728	195728	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:195728C>T	uc003sip.2	+	2	1011	c.780C>T	c.(778-780)AGC>AGT	p.S260S		NM_020223	NP_064608	Q8IXL6	DMP4_HUMAN	family with sequence similarity 20, member C	260						extracellular region					0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.57e-17)|Epithelial(4;1.26e-16)|all cancers(6;4.79e-14)		GGATCACCAGCGTGGGTAGGT	0.612													46	18					0	0	1	0	0	
SDK1	221935	broad.mit.edu	37	7	4273010	4273010	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:4273010C>T	uc003smx.2	+	41	6090	c.5951C>T	c.(5950-5952)GCG>GTG	p.A1984V	SDK1_uc010kso.2_Missense_Mutation_p.A1240V|SDK1_uc003smy.2_Missense_Mutation_p.A471V|SDK1_uc003smz.2_Missense_Mutation_p.A44V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1984	Fibronectin type-III 13.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GTGAATGAGGCGGGCTACGGG	0.622													46	24					0	0	1	0	0	
RBAK	57786	broad.mit.edu	37	7	5105012	5105012	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:5105012A>G	uc010kss.1	+	6	2249	c.1925A>G	c.(1924-1926)TAC>TGC	p.Y642C	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.Y642C	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	642	C2H2-type 14.|Interaction with AR.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		ACTGTCCACTACAGAAGCCAT	0.393													6	106					0	0	1	0	0	
PHF14	9678	broad.mit.edu	37	7	11091407	11091407	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:11091407G>T	uc003sry.1	+	14	2916	c.2481G>T	c.(2479-2481)ACG>ACT	p.T827T	PHF14_uc011jxi.1_Silent_p.T542T|PHF14_uc003srz.2_Silent_p.T827T|PHF14_uc011jxj.1_Silent_p.T542T	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	827							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TAAGAAACACGGTAGTTTATT	0.388													3	26					1	1	1	1	0	
DGKB	1607	broad.mit.edu	37	7	14775710	14775710	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:14775710T>C	uc003ssz.2	-	4	465	c.278A>G	c.(277-279)CAT>CGT	p.H93R	DGKB_uc011jxt.1_Missense_Mutation_p.H86R|DGKB_uc003sta.2_Missense_Mutation_p.H93R|DGKB_uc011jxu.1_Missense_Mutation_p.H93R|DGKB_uc011jxv.1_Missense_Mutation_p.H93R	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	93					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGGACTAGAATGAGGAAACTT	0.353													4	13					0	0	1	0	0	
FAM126A	84668	broad.mit.edu	37	7	22985387	22985387	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:22985387G>T	uc003svm.3	-	11	1642	c.1387C>A	c.(1387-1389)CCA>ACA	p.P463T	FAM126A_uc003svn.3_3'UTR	NM_032581	NP_115970	Q9BYI3	HYCCI_HUMAN	family with sequence similarity 126, member A	463						cytoplasm|membrane	signal transducer activity			central_nervous_system(1)	1						GGGTTATGTGGGACTGTGACA	0.468													36	98					1.836e-18	2.05476e-18	1	1	0	
CLK2P	1197	broad.mit.edu	37	7	23624787	23624787	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:23624787G>A	uc003swk.2	-	1	1360	c.710C>T	c.(709-711)GCT>GTT	p.A237V		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CAGCCGCTGAGCTGGTTCATA	0.542													13	45					0	0	1	0	0	
C7orf31	136895	broad.mit.edu	37	7	25194757	25194757	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:25194757G>A	uc003sxn.1	-	6	1029	c.468C>T	c.(466-468)CGC>CGT	p.R156R	C7orf31_uc003sxm.1_5'UTR	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	156											0						ACATGGCGCCGCGACAGATGT	0.502													19	77					0	0	1	0	0	
GHRHR	2692	broad.mit.edu	37	7	31014105	31014105	+	Splice_Site	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:31014105G>A	uc003tbx.2	+	8	860	c.812_splice	c.e8+1	p.A271_splice	GHRHR_uc003tbw.1_Splice_Site_p.A271_splice|GHRHR_uc003tby.2_Splice_Site_p.A207_splice|GHRHR_uc003tbz.2_Splice_Site_p.R37_splice	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor						activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	AGGACATCGCGTGAGTCGGAG	0.617													51	42					0	0	1	0	0	
NT5C3	51251	broad.mit.edu	37	7	33055402	33055402	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:33055402G>A	uc003tdk.2	-	8	866	c.789C>T	c.(787-789)TTC>TTT	p.F263F	AVL9_uc011kai.1_Intron|NT5C3_uc003tdi.2_Silent_p.F224F|NT5C3_uc003tdj.2_Silent_p.F224F	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	263					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			TTAGTTGATTGAAATATTCTG	0.353													19	54					0	0	1	0	0	
BBS9	27241	broad.mit.edu	37	7	33545232	33545232	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:33545232C>T	uc003tdn.1	+	20	2786	c.2273C>T	c.(2272-2274)CCG>CTG	p.P758L	BBS9_uc003tdo.1_Missense_Mutation_p.P723L|BBS9_uc003tdp.1_Missense_Mutation_p.P753L|BBS9_uc003tdq.1_Missense_Mutation_p.P718L|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Missense_Mutation_p.P282L|BBS9_uc003tds.1_Missense_Mutation_p.P181L|BBS9_uc003tdt.2_RNA	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	758					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			GCATTTCTGCCGCTACAAGAA	0.498									Bardet-Biedl_syndrome				31	39					0	0	1	0	0	
EEPD1	80820	broad.mit.edu	37	7	36194050	36194050	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:36194050G>A	uc003tfa.2	+	2	757	c.117G>A	c.(115-117)CGG>CGA	p.R39R		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	39	HhH.				DNA repair		DNA binding				0						ATCAGGAGCGGCTCAACATCA	0.607													40	140					0	0	1	0	0	
MIR1200	100302113	broad.mit.edu	37	7	36959035	36959035	+	RNA	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:36959035G>T	hsa-mir-1200|MI0006332	-			c.3G>T			ELMO1_uc003tfi.1_Intron|ELMO1_uc003tfj.1_Intron|ELMO1_uc011kbb.1_Intron|ELMO1_uc011kbc.1_Intron|ELMO1_uc003tfk.1_Intron|ELMO1_uc010kxg.1_Intron																	0						AGgagaagtagcatagtaaac	0.224													8	32					1.06961e-07	1.12749e-07	1	1	0	
AMPH	273	broad.mit.edu	37	7	38433753	38433753	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:38433753G>A	uc003tgu.2	-	18	1529	c.1460C>T	c.(1459-1461)GCC>GTC	p.A487V	AMPH_uc003tgv.2_Missense_Mutation_p.A445V|AMPH_uc003tgt.2_Missense_Mutation_p.A372V|AMPH_uc003tgw.1_Missense_Mutation_p.A510V|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	487					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CTCTCCTGGGGCCCCCTCAGC	0.577													15	120					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42116409	42116409	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:42116409C>T	uc011kbh.1	-	4	506	c.415G>A	c.(415-417)GCC>ACC	p.A139T	GLI3_uc011kbg.1_Missense_Mutation_p.A80T	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	139					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGATGTCTGGCATCAATTGGT	0.413									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				9	50					0	0	1	0	0	
NUDCD3	23386	broad.mit.edu	37	7	44425629	44425629	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:44425629G>A	uc003tkz.2	-	6	1253	c.1067C>T	c.(1066-1068)CCG>CTG	p.P356L	NUDCD3_uc010kye.2_RNA	NM_015332	NP_056147	Q8IVD9	NUDC3_HUMAN	NudC domain containing 3	356											0						CACAGCCCCCGGGGAGATGTT	0.562													23	52					0	0	1	0	0	
MYO1G	64005	broad.mit.edu	37	7	45015133	45015133	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:45015133A>C	uc003tmh.2	-	4	658	c.514T>G	c.(514-516)TTC>GTC	p.F172V	MYO1G_uc003tmg.2_5'Flank|MYO1G_uc010kym.2_Missense_Mutation_p.F57V|MYO1G_uc003tmi.1_Missense_Mutation_p.F84V|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	172	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						TCCCCCTTGAAGTCAAAGTTG	0.597													31	22					0	0	1	0	0	
TNS3	64759	broad.mit.edu	37	7	47344520	47344520	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:47344520C>T	uc003tnv.2	-	21	3099	c.2732G>A	c.(2731-2733)CGG>CAG	p.R911Q	TNS3_uc003tnw.2_Missense_Mutation_p.R911Q	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	911						focal adhesion	protein binding			ovary(4)	4						CGCATCAGCCCGGAGCATCGT	0.587													9	32					0	0	1	0	0	
PKD1L1	168507	broad.mit.edu	37	7	47944770	47944770	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:47944770G>A	uc003tny.1	-	11	1675	c.1675C>T	c.(1675-1677)CTC>TTC	p.L559F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	559	Extracellular (Potential).|PKD 1.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GGGATGCTGAGTCTTTTTTTA	0.443													49	31					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48313025	48313025	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:48313025G>T	uc003toq.2	+	17	3787	c.3762G>T	c.(3760-3762)GAG>GAT	p.E1254D	ABCA13_uc010kyr.2_Missense_Mutation_p.E757D	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1254					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCAAGTGGAGAAATCCCTTT	0.388													8	25					1.06961e-07	1.12749e-07	1	1	0	
ABCA13	154664	broad.mit.edu	37	7	48335320	48335320	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:48335320G>A	uc003toq.2	+	21	9004	c.8979G>A	c.(8977-8979)TCG>TCA	p.S2993S	ABCA13_uc010kys.1_Silent_p.S67S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2993					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TATGGTCCTCGCCGAATCAGC	0.388													69	77					0	0	1	0	0	
GTF2IRD1	9569	broad.mit.edu	37	7	74005272	74005272	+	Silent	SNP	G	A	A	rs113892752		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:74005272G>A	uc003uaq.2	+	24	2955	c.2562G>A	c.(2560-2562)ACG>ACA	p.T854T	GTF2IRD1_uc010lbq.2_Silent_p.T871T|GTF2IRD1_uc003uap.2_Silent_p.T839T|GTF2IRD1_uc003uar.1_Silent_p.T839T	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	854	GTF2I-like 5.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						ACCCCAACACGTACGACATCC	0.612													29	87					0	0	1	0	0	
HIP1	3092	broad.mit.edu	37	7	75189089	75189089	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:75189089C>A	uc003uds.1	-	14	1363	c.1322G>T	c.(1321-1323)AGG>ATG	p.R441M	HIP1_uc011kfz.1_Missense_Mutation_p.R318M	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	441	Potential.|pDED.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						CCGCTGCCTCCTGAGCTCGTC	0.493			T	PDGFRB	CMML								12	44					0.00185496	0.00188908	1	1	0	
SEMA3A	10371	broad.mit.edu	37	7	83823851	83823851	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:83823851C>T	uc003uhz.2	-	1	367	c.52G>A	c.(52-54)GCA>ACA	p.A18T		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	18					axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						TTTGCTCTTGCTGTAAGTAAT	0.393													24	187					0	0	1	0	0	
CLDN12	9069	broad.mit.edu	37	7	90042232	90042232	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:90042232T>C	uc003ukp.2	+	5	878	c.242T>C	c.(241-243)CTG>CCG	p.L81P	CLDN12_uc003ukq.2_Missense_Mutation_p.L81P|CLDN12_uc010leq.2_Missense_Mutation_p.L81P|CLDN12_uc003ukr.2_Missense_Mutation_p.L81P|CLDN12_uc003uks.2_Missense_Mutation_p.L81P	NM_012129	NP_036261	P56749	CLD12_HUMAN	claudin 12	81	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GTTGACCAGCTGGACCTGCGT	0.562													53	174					0	0	1	0	0	
CASD1	64921	broad.mit.edu	37	7	94163028	94163028	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:94163028T>C	uc003uni.3	+	7	769	c.542T>C	c.(541-543)CTT>CCT	p.L181P	CASD1_uc003unh.2_Missense_Mutation_p.L181P|CASD1_uc003unj.3_Missense_Mutation_p.L181P	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	181						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			AGTGAAGCGCTTTCTCAATAT	0.313													33	46					0	0	1	0	0	
LMTK2	22853	broad.mit.edu	37	7	97821424	97821424	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:97821424C>T	uc003upd.1	+	11	1940	c.1647C>T	c.(1645-1647)AGC>AGT	p.S549S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	549					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CTGTTGGAAGCGACTATTATA	0.502													29	81					0	0	1	0	0	
BAIAP2L1	55971	broad.mit.edu	37	7	97984432	97984432	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:97984432G>A	uc003upj.2	-	3	399	c.136C>T	c.(136-138)CTG>TTG	p.L46L		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	46	IMD.				filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			TTTCCTGCCAGGATCATAGCT	0.498													19	27					0	0	1	0	0	
CYP3A7	1551	broad.mit.edu	37	7	99308406	99308406	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:99308406A>G	uc003uru.2	-	10	1080	c.975T>C	c.(973-975)CCT>CCC	p.P325P	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	325					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GCTGGACATCAGGGTGAGTGG	0.443													40	28					0	0	1	0	0	
MCM7	4176	broad.mit.edu	37	7	99695354	99695354	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:99695354C>T	uc003usw.1	-	9	1510	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	MCM7_uc003usv.1_Missense_Mutation_p.E158K|MCM7_uc003usx.1_Missense_Mutation_p.E158K	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	334	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	GCCAGCTTTTCGTAGAAATCC	0.507													8	230					0	0	1	0	0	
TAF6	6878	broad.mit.edu	37	7	99706053	99706053	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:99706053C>T	uc003uti.2	-	13	1476	c.1395G>A	c.(1393-1395)AAG>AAA	p.K465K	AP4M1_uc003utd.2_Intron|TAF6_uc003utg.2_Silent_p.K387K|TAF6_uc003uth.2_Silent_p.K522K|TAF6_uc003utk.2_Silent_p.K465K|TAF6_uc011kji.1_Silent_p.K502K|TAF6_uc003utj.2_Silent_p.K455K|TAF6_uc003utl.2_Silent_p.K465K|TAF6_uc003utm.2_Silent_p.K465K	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	465					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGGCCCGAGCCTTGACCACCT	0.647													77	76					0	0	1	0	0	
TSC22D4	81628	broad.mit.edu	37	7	100064709	100064709	+	Missense_Mutation	SNP	C	T	T	rs143908452		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100064709C>T	uc003uva.2	-	5	1816	c.1061G>A	c.(1060-1062)CGG>CAG	p.R354Q	C7orf61_uc003uuz.1_5'Flank|TSC22D4_uc003uvb.2_Missense_Mutation_p.R115Q|TSC22D4_uc011kjv.1_Missense_Mutation_p.R115Q|TSC22D4_uc010lgx.2_Missense_Mutation_p.R354Q	NM_030935	NP_112197	Q9Y3Q8	T22D4_HUMAN	TSC22 domain family, member 4	354	Leucine-zipper.				negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			breast(2)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CGCAGCGTTCCGCTCCGCCAA	0.697													16	38					0	0	1	0	0	
PCOLCE	5118	broad.mit.edu	37	7	100201580	100201580	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100201580A>G	uc003uvo.2	+	3	403	c.205_splice	c.e3-2	p.V69_splice	uc011kjy.1_RNA|PCOLCE_uc011kkb.1_Splice_Site_p.V69_splice|PCOLCE_uc010lhb.1_Intron|PCOLCE_uc003uvp.1_5'Flank	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer						multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CCCCGCTATCAGGTCCCCGAG	0.647													38	55					0	0	1	0	0	
ZAN	7455	broad.mit.edu	37	7	100369603	100369603	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100369603G>T	uc003uwj.2	+	29	5550	c.5385G>T	c.(5383-5385)CAG>CAT	p.Q1795H	ZAN_uc003uwk.2_Missense_Mutation_p.Q1795H|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Missense_Mutation_p.Q372H|ZAN_uc011kke.1_5'Flank	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1795	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGTGTGCCCAGGCTGGCCAGG	0.652													9	36					0.0477658	0.0479939	1	1	0	
ACHE	43	broad.mit.edu	37	7	100489954	100489954	+	Splice_Site	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100489954C>T	uc003uxd.2	-	2	1709	c.1553_splice	c.e2+1	p.G518_splice	UFSP1_uc003uxc.3_5'Flank|ACHE_uc003uxe.2_Splice_Site_p.G518_splice|ACHE_uc003uxf.2_Splice_Site_p.G518_splice|ACHE_uc003uxg.2_Splice_Site_p.G518_splice|ACHE_uc003uxh.2_Splice_Site_p.G430_splice|ACHE_uc003uxi.2_Splice_Site_p.G518_splice	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor						acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	GCACTGCTGACCCTGTGCGGG	0.607													13	51					0	0	1	0	0	
MUC17	140453	broad.mit.edu	37	7	100682687	100682687	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100682687G>A	uc003uxp.1	+	3	8043	c.7990G>A	c.(7990-7992)GTG>ATG	p.V2664M	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2664	Extracellular (Potential).|43.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAGGACACTTGTGACCACTTC	0.463													15	429					0	0	1	0	0	
PLOD3	8985	broad.mit.edu	37	7	100853686	100853686	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:100853686G>A	uc003uyd.2	-	14	1996	c.1540C>T	c.(1540-1542)CGG>TGG	p.R514W	PLOD3_uc010lhs.2_Missense_Mutation_p.R79W	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	514					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	GCCAGGAGCCGGCCAAATTCA	0.637													21	23					0	0	1	0	0	
LHFPL3	375612	broad.mit.edu	37	7	103969672	103969672	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:103969672G>A	uc003vce.2	+	1	569	c.445G>A	c.(445-447)GCT>ACT	p.A149T	LHFPL3_uc003vcf.2_Missense_Mutation_p.A149T	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	135	Helical; (Potential).					integral to membrane					0						GCTCACCTCCGGTGAGTGCGC	0.647													23	69					0	0	1	0	0	
SRPK2	6733	broad.mit.edu	37	7	104773469	104773469	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:104773469C>A	uc003vct.2	-	11	1780	c.1593G>T	c.(1591-1593)CTG>CTT	p.L531L	SRPK2_uc003vcu.2_Silent_p.L531L|SRPK2_uc003vcv.2_Silent_p.L542L|SRPK2_uc003vcw.1_Silent_p.L531L|SRPK2_uc003vcs.1_5'Flank	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	531	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAGCATTTCCCAGGTCAGCAA	0.453													24	66					2.89027e-11	3.13783e-11	1	1	0	
C7orf60	154743	broad.mit.edu	37	7	112462111	112462111	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:112462111A>T	uc003vgo.1	-	5	1033	c.906T>A	c.(904-906)TTT>TTA	p.F302L	C7orf60_uc011kms.1_Missense_Mutation_p.F328L	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	302										ovary(2)|skin(1)	3						TGAAGCGTTTAAAGCCCAGGG	0.388													52	51					0	0	1	0	0	
MET	4233	broad.mit.edu	37	7	116381017	116381017	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:116381017C>T	uc003vij.2	+	5	1826	c.1639C>T	c.(1639-1641)CGA>TGA	p.R547*	MET_uc010lkh.2_Nonsense_Mutation_p.R547*|MET_uc011knc.1_Nonsense_Mutation_p.R547*|MET_uc011knd.1_Nonsense_Mutation_p.R547*|MET_uc011kne.1_Nonsense_Mutation_p.R519*|MET_uc011knf.1_Nonsense_Mutation_p.R547*|MET_uc011kng.1_Nonsense_Mutation_p.R547*|MET_uc011knh.1_Nonsense_Mutation_p.R547*|MET_uc011kni.1_Nonsense_Mutation_p.R547*|MET_uc011knj.1_Nonsense_Mutation_p.R117*|MET_uc011knb.1_Nonsense_Mutation_p.R547*	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	547	Extracellular (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CAAATGTGTGCGATCGGAGGA	0.507			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				75	81					0	0	1	0	0	
TSPAN12	23554	broad.mit.edu	37	7	120428948	120428948	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:120428948A>C	uc003vjk.2	-	8	990	c.616T>G	c.(616-618)TGT>GGT	p.C206G	TSPAN12_uc010lkj.2_Missense_Mutation_p.C79G	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	206	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					TTCTTCCCACAACCCTGTAAA	0.378													30	27					0	0	1	0	0	
TSPAN12	23554	broad.mit.edu	37	7	120455798	120455798	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:120455798A>G	uc003vjk.2	-	5	719	c.345T>C	c.(343-345)TAT>TAC	p.Y115Y		NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	115	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					GTTCCTGTTCATATGTCCAAA	0.294													4	21					0	0	1	0	0	
IQUB	154865	broad.mit.edu	37	7	123119935	123119935	+	Missense_Mutation	SNP	T	C	C	rs111558568		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:123119935T>C	uc003vkn.2	-	8	1901	c.1324A>G	c.(1324-1326)ACT>GCT	p.T442A	IQUB_uc003vko.2_Missense_Mutation_p.T442A|IQUB_uc010lkt.2_Intron|IQUB_uc003vkp.1_Missense_Mutation_p.T442A	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	442										ovary(3)|large_intestine(1)	4						ATTATCTGAGTCTCTTTTTCC	0.398													14	55					0	0	1	0	0	
FLNC	2318	broad.mit.edu	37	7	128470736	128470736	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:128470736C>T	uc003vnz.3	+	1	254	c.45C>T	c.(43-45)GGC>GGT	p.G15G	FLNC_uc003voa.3_Silent_p.G15G	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	15	Actin-binding.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCGGCCTGGGCGATGAGACAG	0.468													11	33					0	0	1	0	0	
FLNC	2318	broad.mit.edu	37	7	128493858	128493858	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:128493858G>A	uc003vnz.3	+	39	6660	c.6451G>A	c.(6451-6453)GGC>AGC	p.G2151S	FLNC_uc003voa.3_Missense_Mutation_p.G2118S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2151					cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CGCCACCATCGGCAGCACCTG	0.667													10	55					0	0	1	0	0	
MGAM	8972	broad.mit.edu	37	7	141750592	141750592	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:141750592C>A	uc003vwy.2	+	24	2787	c.2733C>A	c.(2731-2733)AGC>AGA	p.S911R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	911	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGGAACCTAGCAATGTTACAG	0.398													24	39					6.44725e-10	6.93508e-10	1	1	0	
OR2A5	393046	broad.mit.edu	37	7	143748314	143748314	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:143748314C>A	uc011ktw.1	+	1	820	c.820C>A	c.(820-822)CTT>ATT	p.L274I		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GCAGAAGGTCCTTTCCCTGTT	0.547													41	102					2.59497e-14	2.86755e-14	1	1	0	
ZNF467	168544	broad.mit.edu	37	7	149461869	149461869	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:149461869G>A	uc003wgd.2	-	5	1863	c.1722C>T	c.(1720-1722)GAC>GAT	p.D574D	ZNF467_uc003wgc.2_Intron	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	574					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAAGGGCGGCGTCCGGGGCCG	0.701													25	18					0	0	1	0	0	
ZNF862	643641	broad.mit.edu	37	7	149558562	149558562	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:149558562G>T	uc010lpn.2	+	7	2505	c.2313G>T	c.(2311-2313)GCG>GCT	p.A771A	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	771					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						AGGAAGGTGCGGCGCCTCTGG	0.607													30	21					1.12875e-08	1.19944e-08	1	1	0	
ZNF775	285971	broad.mit.edu	37	7	150094403	150094403	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:150094403G>A	uc003whf.1	+	3	959	c.834G>A	c.(832-834)CCG>CCA	p.P278P		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	278					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		cgggcgagccgcgccAGTTCA	0.438													20	20					0	0	1	0	0	
ATG9B	285973	broad.mit.edu	37	7	150720577	150720577	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:150720577C>T	uc011kvc.1	-	3	690	c.614G>A	c.(613-615)CGG>CAG	p.R205Q	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	205	Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAGCCATTCCGCTGGTGGTA	0.632													18	3					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151879153	151879153	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:151879153G>T	uc003wla.2	-	36	6011	c.5792C>A	c.(5791-5793)TCG>TAG	p.S1931*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S992*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1931	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CCTAGATACCGATGATAAAGG	0.448			N		medulloblastoma								87	65					9.35349e-44	1.07305e-43	1	1	0	
MLL3	58508	broad.mit.edu	37	7	151962260	151962260	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:151962260G>T	uc003wla.2	-	8	1266	c.1047C>A	c.(1045-1047)AGC>AGA	p.S349R		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	349	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGTCTCCCGGGCTGTCGCACA	0.388			N		medulloblastoma								7	180					1.61879e-10	1.74843e-10	1	1	0	
WDR60	55112	broad.mit.edu	37	7	158716414	158716414	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:158716414G>A	uc003woe.3	+	17	2405	c.2247G>A	c.(2245-2247)ACG>ACA	p.T749T	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Silent_p.T381T	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	749										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		GGACCGCCACGTTTTCCACCG	0.502													89	95					0	0	1	0	0	
DLGAP2	9228	broad.mit.edu	37	8	1645405	1645405	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:1645405C>T	uc003wpl.2	+	11	2746	c.2649C>T	c.(2647-2649)TTC>TTT	p.F883F	DLGAP2_uc003wpm.2_Silent_p.F869F	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	962					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		GCATGAAGTTCGACGAGCTGC	0.642													37	89					0	0	1	0	0	
ARHGEF10	9639	broad.mit.edu	37	8	1851600	1851600	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:1851600G>A	uc003wpr.2	+	16	1982	c.1804G>A	c.(1804-1806)GAA>AAA	p.E602K	ARHGEF10_uc003wpq.1_Missense_Mutation_p.E626K|ARHGEF10_uc003wps.2_Missense_Mutation_p.E564K|ARHGEF10_uc003wpt.2_Missense_Mutation_p.E478K|ARHGEF10_uc003wpv.2_Missense_Mutation_p.E335K|ARHGEF10_uc010lre.2_Missense_Mutation_p.E282K	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	627					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		AGCCATAAACGAAAGATACCT	0.398													12	67					0	0	1	0	0	
CSMD1	64478	broad.mit.edu	37	8	3224595	3224595	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:3224595T>C	uc011kwk.1	-	20	3467	c.3077A>G	c.(3076-3078)GAC>GGC	p.D1026G	CSMD1_uc011kwj.1_Missense_Mutation_p.D418G|CSMD1_uc003wqe.2_Missense_Mutation_p.D182G	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1026	Extracellular (Potential).|CUB 6.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AATTGAGAAGTCTGATATAAA	0.478													7	20					0	0	1	0	0	
MIR124-1	406907	broad.mit.edu	37	8	9760969	9760969	+	RNA	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:9760969G>A	hsa-mir-124-1|MI0000443	-			c.14G>A			LOC157627_uc003wst.1_5'Flank|LOC157627_uc003wsu.2_5'Flank|uc003wsw.1_RNA																	0						CTGTGAACACGGAGAGAGAGG	0.423													4	29					0	0	1	0	0	
MIR598	693183	broad.mit.edu	37	8	10892734	10892734	+	RNA	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:10892734C>T	hsa-mir-598|MI0003610	-			c.79C>T			XKR6_uc003wtk.1_Intron																	0						atgatgatgacgatgacaacg	0.259													22	66					0	0	1	0	0	
LGI3	203190	broad.mit.edu	37	8	22005848	22005848	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:22005848T>C	uc003xav.2	-	8	1761	c.1472A>G	c.(1471-1473)CAG>CGG	p.Q491R	LGI3_uc010ltu.2_Missense_Mutation_p.Q467R	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	491	EAR 6.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		CTGGTAGATCTGGGTGAAGGA	0.652													13	47					0	0	1	0	0	
LOXL2	4017	broad.mit.edu	37	8	23198656	23198656	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:23198656G>A	uc003xdh.1	-	4	931	c.592C>T	c.(592-594)CGC>TGC	p.R198C	uc003xdj.2_RNA|uc003xdi.2_RNA	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	198	SRCR 2.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		ACTGGGGTGCGCTTGCGGTAG	0.567													29	121					0	0	1	0	0	
PTK2B	2185	broad.mit.edu	37	8	27278190	27278190	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:27278190C>T	uc003xfn.1	+	9	1208	c.400C>T	c.(400-402)CGC>TGC	p.R134C	PTK2B_uc003xfo.1_Missense_Mutation_p.R134C|PTK2B_uc003xfp.1_Missense_Mutation_p.R134C|PTK2B_uc003xfq.1_Missense_Mutation_p.R134C	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	134	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		CCTTCAAATCCGCTACTTGCC	0.493													30	96					0	0	1	0	0	
PTK2B	2185	broad.mit.edu	37	8	27288462	27288462	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:27288462G>A	uc003xfn.1	+	13	1547	c.739G>A	c.(739-741)GTC>ATC	p.V247I	PTK2B_uc003xfo.1_Missense_Mutation_p.V247I|PTK2B_uc003xfp.1_Missense_Mutation_p.V247I|PTK2B_uc003xfq.1_Missense_Mutation_p.V247I|PTK2B_uc010luq.1_Missense_Mutation_p.V18I|PTK2B_uc003xfr.1_5'Flank	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	247	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		GGAGGAGTGCGTCATGAAGTT	0.582													40	120					0	0	1	0	0	
EXTL3	2137	broad.mit.edu	37	8	28573610	28573610	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:28573610G>A	uc003xgz.1	+	3	627	c.34G>A	c.(34-36)GCG>ACG	p.A12T		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	12	Cytoplasmic (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GAATGGGGGCGCGGGGAACGG	0.607													27	62					0	0	1	0	0	
EXTL3	2137	broad.mit.edu	37	8	28608343	28608343	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:28608343G>A	uc003xgz.1	+	7	3313	c.2720G>A	c.(2719-2721)CGC>CAC	p.R907H		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	907	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TTCAAGACACGCCTGCCCCAT	0.562													40	111					0	0	1	0	0	
RAB11FIP1	80223	broad.mit.edu	37	8	37729956	37729956	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:37729956C>T	uc003xkm.1	-	4	2408	c.2364G>A	c.(2362-2364)ATG>ATA	p.M788I	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Missense_Mutation_p.M117I|RAB11FIP1_uc003xko.1_Missense_Mutation_p.M117I|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	788					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CCAGCTTCCGCATCATGGAAT	0.547													33	93					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41794925	41794925	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:41794925G>A	uc010lxb.2	-	17	3745	c.3201C>T	c.(3199-3201)ATC>ATT	p.I1067I	MYST3_uc010lxc.2_Silent_p.I1067I|MYST3_uc003xon.3_Silent_p.I1067I	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1067					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTTCTTCATCGATCTCAAACG	0.433													26	90					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41906483	41906483	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:41906483C>T	uc010lxb.2	-	3	557	c.13G>A	c.(13-15)GCA>ACA	p.A5T	MYST3_uc010lxc.2_Missense_Mutation_p.A5T|MYST3_uc003xon.3_Missense_Mutation_p.A5T|MYST3_uc010lxd.2_Missense_Mutation_p.A5T	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	5	Required for activation of RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			AGCGGGTTTGCGAGTTTTACC	0.413													53	169					0	0	1	0	0	
RNF170	81790	broad.mit.edu	37	8	42742939	42742939	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:42742939G>A	uc003xpo.2	-	2	546	c.69C>T	c.(67-69)AGC>AGT	p.S23S	RNF170_uc011lcx.1_Silent_p.S23S|RNF170_uc010lxp.2_Intron|RNF170_uc003xpm.2_Silent_p.S23S|RNF170_uc003xpp.2_5'UTR|RNF170_uc003xpn.2_5'UTR|RNF170_uc003xpq.3_Silent_p.S23S	NM_001160223	NP_001153695	Q96K19	RN170_HUMAN	ring finger protein 170 isoform a	23						integral to membrane	zinc ion binding				0	all_lung(13;1.25e-11)|Lung NSC(13;3.55e-10)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00645)|Lung NSC(58;0.0176)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			GTACTTGGTCGCTTACTCCTT	0.383													15	68					0	0	1	0	0	
POTEA	340441	broad.mit.edu	37	8	43155752	43155752	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:43155752T>G	uc003xpz.1	+	4	723	c.680T>G	c.(679-681)CTT>CGT	p.L227R	POTEA_uc003xqa.1_Missense_Mutation_p.L227R	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	227										ovary(1)	1						TTAAATGCACTTGATAGGTTT	0.318													15	58					0	0	1	0	0	
PXDNL	137902	broad.mit.edu	37	8	52321056	52321056	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:52321056C>T	uc003xqu.3	-	17	3229	c.3128G>A	c.(3127-3129)GGC>GAC	p.G1043D	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1043					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GTTAATGATGCCTGCATTCAC	0.498													7	22					0	0	1	0	0	
PXDNL	137902	broad.mit.edu	37	8	52321771	52321771	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:52321771G>A	uc003xqu.3	-	17	2514	c.2413C>T	c.(2413-2415)CAC>TAC	p.H805Y	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	805					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CAGCCCCAGTGCATGAGCATG	0.711													6	11					0	0	1	0	0	
RB1CC1	9821	broad.mit.edu	37	8	53596230	53596230	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:53596230C>T	uc003xre.3	-	5	806	c.248G>A	c.(247-249)CGT>CAT	p.R83H	RB1CC1_uc003xrf.3_Missense_Mutation_p.R83H	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	83					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				AGCAGGTGGACGATCACATAA	0.284													16	57					0	0	1	0	0	
NPBWR1	2831	broad.mit.edu	37	8	53852972	53852972	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:53852972G>A	uc011ldu.1	+	1	505	c.505G>A	c.(505-507)GTC>ATC	p.V169I		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	169	Helical; Name=4; (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				CGTCACACTCGTCGTGCTGCC	0.726													3	16					0	0	1	0	0	
OPRK1	4986	broad.mit.edu	37	8	54163406	54163406	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:54163406C>T	uc003xrh.1	-	1	567	c.192G>A	c.(190-192)GCG>GCA	p.A64A	OPRK1_uc003xri.1_Silent_p.A64A|OPRK1_uc010lyc.1_5'UTR	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	64	Helical; Name=1; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	CGGAGTAGACCGCCGTGATGA	0.701													15	51					0	0	1	0	0	
RGS20	8601	broad.mit.edu	37	8	54852152	54852152	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:54852152G>A	uc003xrp.2	+	3	619	c.527G>A	c.(526-528)CGG>CAG	p.R176Q	RGS20_uc003xrq.2_Missense_Mutation_p.R61Q|RGS20_uc010lye.2_Intron|RGS20_uc010lyf.2_Intron|RGS20_uc003xrs.2_Missense_Mutation_p.R29Q|RGS20_uc003xrt.2_Intron	NM_170587	NP_733466	O76081	RGS20_HUMAN	regulator of G-protein signaling 20 isoform a	176					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|nucleus|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(7;1.37e-06)|Epithelial(17;0.000126)|all cancers(17;0.0009)			GGATCAGAGCGGATGGAGATG	0.647													4	5					0	0	1	0	0	
XKR4	114786	broad.mit.edu	37	8	56015229	56015229	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:56015229T>G	uc003xsf.2	+	1	213	c.181T>G	c.(181-183)TGC>GGC	p.C61G		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	61						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			cggcggcggctgctcgcgctg	0.244													4	7					0	0	1	0	0	
TMEM68	137695	broad.mit.edu	37	8	56663664	56663664	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:56663664T>C	uc003xsg.1	-	3	615	c.546A>G	c.(544-546)AAA>AAG	p.K182K	TMEM68_uc003xsh.1_Silent_p.K182K	NM_152417	NP_689630	Q96MH6	TMM68_HUMAN	transmembrane protein 68	182						integral to membrane	acyltransferase activity			skin(1)	1			Epithelial(17;0.000361)|all cancers(17;0.00326)			TTTCAACACATTTTTCTCTTG	0.378													34	86					0	0	1	0	0	
BHLHE22	27319	broad.mit.edu	37	8	65493419	65493419	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:65493419C>T	uc003xvi.2	+	1	606	c.72C>T	c.(70-72)AGC>AGT	p.S24S	LOC401463_uc003xvh.2_Intron	NM_152414	NP_689627	Q8NFJ8	BHE22_HUMAN	basic helix-loop-helix domain containing, class	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						AGAGCCTGAGCGCCTCCACCT	0.731													4	8					0	0	1	0	0	
DNAJC5B	85479	broad.mit.edu	37	8	66989062	66989062	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:66989062A>G	uc003xvs.1	+	4	578	c.287A>G	c.(286-288)GAC>GGC	p.D96G	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	96					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			CAGTTTGGAGACGAAAACGTT	0.448													30	108					0	0	1	0	0	
SULF1	23213	broad.mit.edu	37	8	70514037	70514037	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:70514037G>A	uc010lza.1	+	10	1751	c.1034G>A	c.(1033-1035)CGT>CAT	p.R345H	SULF1_uc003xyd.2_Missense_Mutation_p.R345H|SULF1_uc003xye.2_Missense_Mutation_p.R345H|SULF1_uc003xyf.2_Missense_Mutation_p.R345H|SULF1_uc003xyg.2_Missense_Mutation_p.R345H|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	345					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TTTTTTATTCGTGGTCCAAGT	0.413													57	181					0	0	1	0	0	
TRPA1	8989	broad.mit.edu	37	8	72967786	72967786	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:72967786T>C	uc003xza.2	-	12	1589	c.1414A>G	c.(1414-1416)ACG>GCG	p.T472A		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	472	ANK 11.|Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AGAAGCCTCGTATCACTTATG	0.388													15	70					0	0	1	0	0	
ESRP1	54845	broad.mit.edu	37	8	95690446	95690446	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:95690446C>T	uc003ygq.3	+	13	1850	c.1667C>T	c.(1666-1668)TCC>TTC	p.S556F	ESRP1_uc003ygr.3_Missense_Mutation_p.S552F|ESRP1_uc003ygs.3_Missense_Mutation_p.S552F|ESRP1_uc003ygt.3_Missense_Mutation_p.S556F|ESRP1_uc003ygu.3_Missense_Mutation_p.S552F|ESRP1_uc003ygv.2_Missense_Mutation_p.S396F|ESRP1_uc003ygw.2_Missense_Mutation_p.S396F	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	556					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TCTCCTCCCTCCTACACATTT	0.478													18	61					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100654601	100654601	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:100654601C>A	uc003yiv.2	+	34	5969	c.5858C>A	c.(5857-5859)CCT>CAT	p.P1953H	VPS13B_uc003yiw.2_Missense_Mutation_p.P1928H	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1953					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CAGCTAGAGCCTTTTCTGTAC	0.463													48	125					1.89013e-27	2.15429e-27	1	1	0	
ANKRD46	157567	broad.mit.edu	37	8	101541845	101541845	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:101541845C>T	uc003yjm.2	-	3	421	c.217G>A	c.(217-219)GCC>ACC	p.A73T	ANKRD46_uc003yjn.1_Missense_Mutation_p.A73T|ANKRD46_uc003yjo.1_Missense_Mutation_p.A73T|ANKRD46_uc003yjp.1_Missense_Mutation_p.A73T	NM_198401	NP_940683	Q86W74	ANR46_HUMAN	ankyrin repeat domain 46	73	ANK 2.					integral to membrane					0	all_cancers(14;5.07e-05)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000353)|all_lung(17;0.000998)		Epithelial(11;2.61e-11)|all cancers(13;5.03e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.49e-06)|STAD - Stomach adenocarcinoma(118;0.0957)			TAATCTGTGGCCAGAAGATCG	0.458													28	72					0	0	1	0	0	
DCAF13	25879	broad.mit.edu	37	8	104427341	104427341	+	Silent	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:104427341G>T	uc003yln.2	+	1	400	c.123G>T	c.(121-123)GGG>GGT	p.G41G	SLC25A32_uc003yll.2_5'UTR|SLC25A32_uc011lhr.1_5'UTR|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						GTACTGAGGGGGCAAGAACGG	0.657													30	43					1.55811e-20	1.75684e-20	1	1	0	
RIMS2	9699	broad.mit.edu	37	8	104709417	104709417	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:104709417A>G	uc003ylp.2	+	2	419	c.280A>G	c.(280-282)ATC>GTC	p.I94V		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	125	FYVE-type.|RabBD.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AACCTGTGGTATCTGCCACAA	0.448										HNSCC(12;0.0054)			29	75					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	105026793	105026793	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:105026793G>A	uc003yls.2	+	17	2745	c.2504G>A	c.(2503-2505)CGA>CAA	p.R835Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R1095Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R909Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R909Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R934Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1157					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GTCGCAGGACGAAGGGGCCGA	0.433										HNSCC(12;0.0054)			22	63					0	0	1	0	0	
KCNV1	27012	broad.mit.edu	37	8	110980792	110980792	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:110980792T>C	uc003ynr.3	-	3	1370	c.1028A>G	c.(1027-1029)TAC>TGC	p.Y343C	KCNV1_uc010mcw.2_Missense_Mutation_p.Y343C	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	343	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GACTTCTTCGTAACACTGGGT	0.378													20	52					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113314033	113314033	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:113314033G>A	uc003ynu.2	-	53	8588	c.8429C>T	c.(8428-8430)ACC>ATC	p.T2810I	CSMD3_uc003yns.2_Missense_Mutation_p.T2012I|CSMD3_uc003ynt.2_Missense_Mutation_p.T2770I|CSMD3_uc011lhx.1_Missense_Mutation_p.T2641I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2810	Extracellular (Potential).|Sushi 17.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TAGGCATCTGGTTTCAGATTC	0.438										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			13	71					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113518929	113518929	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:113518929G>A	uc003ynu.2	-	29	5045	c.4886C>T	c.(4885-4887)GCG>GTG	p.A1629V	CSMD3_uc003yns.2_Missense_Mutation_p.A901V|CSMD3_uc003ynt.2_Missense_Mutation_p.A1589V|CSMD3_uc011lhx.1_Missense_Mutation_p.A1525V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1629	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCTGATGAACGCCAAGGAGAT	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			15	94					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113585761	113585761	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:113585761C>A	uc003ynu.2	-	24	4170	c.4011G>T	c.(4009-4011)GGG>GGT	p.G1337G	CSMD3_uc003yns.2_Silent_p.G609G|CSMD3_uc003ynt.2_Silent_p.G1297G|CSMD3_uc011lhx.1_Silent_p.G1233G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1337	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTTCATCTGTCCCTTCAGTAT	0.388										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			33	95					4.34311e-12	4.73466e-12	1	1	0	
TRPS1	7227	broad.mit.edu	37	8	116430571	116430571	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:116430571T>C	uc003ynz.2	-	5	3230	c.2771A>G	c.(2770-2772)CAG>CGG	p.Q924R	TRPS1_uc011lhy.1_Missense_Mutation_p.Q928R|TRPS1_uc003yny.2_Missense_Mutation_p.Q937R|TRPS1_uc010mcy.2_Missense_Mutation_p.Q924R	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	924					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GTGAAGCTTCTGGTAGAGGCC	0.488									Langer-Giedion_syndrome				39	100					0	0	1	0	0	
COL14A1	7373	broad.mit.edu	37	8	121238900	121238900	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:121238900T>C	uc003yox.2	+	16	2164	c.1899T>C	c.(1897-1899)GAT>GAC	p.D633D	COL14A1_uc003yoy.2_Silent_p.D311D	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	633	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TAGAAATTGATGAGGTGACGA	0.473													12	28					0	0	1	0	0	
WDR67	93594	broad.mit.edu	37	8	124121565	124121565	+	Silent	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:124121565A>G	uc003ypp.1	+	9	1308	c.1218A>G	c.(1216-1218)TTA>TTG	p.L406L	WDR67_uc011lig.1_Silent_p.L406L|WDR67_uc011lih.1_Silent_p.L296L|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Silent_p.L119L	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	406						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			AGAATGAATTACCAGATGGAT	0.294													20	45					0	0	1	0	0	
ATAD2	29028	broad.mit.edu	37	8	124359583	124359583	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:124359583C>T	uc003yqh.3	-	16	2069	c.1961G>A	c.(1960-1962)CGC>CAC	p.R654H	ATAD2_uc011lii.1_Missense_Mutation_p.R445H|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.R654H	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	654					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CTGTGGGTAGCGTCGTCGTAA	0.418													28	93					0	0	1	0	0	
ATAD2	29028	broad.mit.edu	37	8	124382200	124382200	+	Missense_Mutation	SNP	A	T	T	rs149848860	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:124382200A>T	uc003yqh.3	-	7	900	c.792T>A	c.(790-792)GAT>GAA	p.D264E	ATAD2_uc011lii.1_Missense_Mutation_p.D55E|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.D264E	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	264	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			catcatcatcatcttcatcat	0.169													13	37					0	0	1	0	0	
TRMT12	55039	broad.mit.edu	37	8	125464363	125464363	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:125464363G>A	uc003yra.3	+	1	1316	c.1195G>A	c.(1195-1197)GCA>ACA	p.A399T		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	399					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GGCAGAATCTGCAGAAACTCG	0.488													11	45					0	0	1	0	0	
RNF139	11236	broad.mit.edu	37	8	125499032	125499032	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:125499032C>A	uc003yrc.2	+	2	1485	c.1142C>A	c.(1141-1143)TCT>TAT	p.S381Y		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	381					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CTCAGTGCCTCTCATGTGTCA	0.393									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				94	311					4.66267e-56	5.35495e-56	1	1	0	
TG	7038	broad.mit.edu	37	8	133920513	133920513	+	Silent	SNP	C	T	T	rs143023529		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:133920513C>T	uc003ytw.2	+	18	3971	c.3930C>T	c.(3928-3930)TAC>TAT	p.Y1310Y	TG_uc010mdw.2_Silent_p.Y69Y	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1310					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GTGCTGACTACGCGGATTTGC	0.597													17	73					0	0	1	0	0	
EPPK1	83481	broad.mit.edu	37	8	144940592	144940592	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:144940592C>T	uc003zaa.1	-	2	14853	c.14840G>A	c.(14839-14841)CGC>CAC	p.R4947H		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4947	Plectin 62.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTCAGGTTGCGCACGGGGTC	0.726													7	111					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144991177	144991177	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:144991177G>A	uc003zaf.1	-	32	13393	c.13223C>T	c.(13222-13224)TCA>TTA	p.S4408L	PLEC_uc003zab.1_Missense_Mutation_p.S4271L|PLEC_uc003zac.1_Missense_Mutation_p.S4275L|PLEC_uc003zad.2_Missense_Mutation_p.S4271L|PLEC_uc003zae.1_Missense_Mutation_p.S4239L|PLEC_uc003zag.1_Missense_Mutation_p.S4249L|PLEC_uc003zah.2_Missense_Mutation_p.S4257L|PLEC_uc003zaj.2_Missense_Mutation_p.S4298L	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4408	Globular 2.|Plectin 29.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						AGTGGGGTCTGACCAGGAGGC	0.672													23	63					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144995188	144995188	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:144995188G>A	uc003zaf.1	-	32	9382	c.9212C>T	c.(9211-9213)ACG>ATG	p.T3071M	PLEC_uc003zab.1_Missense_Mutation_p.T2934M|PLEC_uc003zac.1_Missense_Mutation_p.T2938M|PLEC_uc003zad.2_Missense_Mutation_p.T2934M|PLEC_uc003zae.1_Missense_Mutation_p.T2902M|PLEC_uc003zag.1_Missense_Mutation_p.T2912M|PLEC_uc003zah.2_Missense_Mutation_p.T2920M|PLEC_uc003zaj.2_Missense_Mutation_p.T2961M	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3071	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CTGCTCTGCCGTGAAGTATTC	0.602													21	104					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144995398	144995398	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:144995398T>C	uc003zaf.1	-	32	9172	c.9002A>G	c.(9001-9003)TAC>TGC	p.Y3001C	PLEC_uc003zab.1_Missense_Mutation_p.Y2864C|PLEC_uc003zac.1_Missense_Mutation_p.Y2868C|PLEC_uc003zad.2_Missense_Mutation_p.Y2864C|PLEC_uc003zae.1_Missense_Mutation_p.Y2832C|PLEC_uc003zag.1_Missense_Mutation_p.Y2842C|PLEC_uc003zah.2_Missense_Mutation_p.Y2850C|PLEC_uc003zaj.2_Missense_Mutation_p.Y2891C	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3001	Globular 2.|Plectin 5.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TAGCTGCAGGTACGTGAGGTT	0.647													39	122					0	0	1	0	0	
GPAA1	8733	broad.mit.edu	37	8	145139352	145139352	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:145139352C>T	uc003zax.2	+	7	960	c.850C>T	c.(850-852)CTG>TTG	p.L284L	GPAA1_uc003zav.1_Silent_p.L162L|GPAA1_uc003zaw.1_Silent_p.L224L	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	284	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGATGGACCGCTGCAGGGCCT	0.657													26	84					0	0	1	0	0	
RECQL4	9401	broad.mit.edu	37	8	145738257	145738257	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:145738257C>T	uc003zdj.2	-	16	2760	c.2728G>A	c.(2728-2730)GTA>ATA	p.V910I		NM_004260	NP_004251	O94761	RECQ4_HUMAN	RecQ protein-like 4	910					DNA duplex unwinding|DNA recombination|DNA repair	cytoplasm|nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|DNA strand annealing activity|zinc ion binding			breast(2)|lung(1)|skin(1)	4	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			AAAGCCTGTACGGTAAGCTGT	0.652			N|F|S			osteosarcoma|skin basal and sqamous cell		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	RAPADILINO_syndrome|Rothmund-Thomson_syndrome|Baller-Gerold_syndrome				3	13					0	0	1	0	0	
FOXD4	2298	broad.mit.edu	37	9	117822	117822	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:117822G>A	uc003zfz.2	-	1	596	c.298C>T	c.(298-300)CGG>TGG	p.R100W		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	100					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCGGCTGCCGGGCATCTTCA	0.682													30	158					0	0	1	0	0	
KIAA0020	9933	broad.mit.edu	37	9	2807900	2807900	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:2807900A>T	uc003zhp.1	-	17	1824	c.1728T>A	c.(1726-1728)TGT>TGA	p.C576*	KIAA0020_uc010mhc.1_Nonsense_Mutation_p.C575*|KIAA0020_uc003zhq.1_Nonsense_Mutation_p.C575*	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	576						endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		TTTTTGCAAAACAACCTGTAA	0.358													11	25					0	0	1	0	0	
ADAMTSL1	92949	broad.mit.edu	37	9	18777025	18777025	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:18777025A>G	uc003zne.3	+	19	2925	c.2798A>G	c.(2797-2799)AAG>AGG	p.K933R		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	933	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGCTATCTCAAGATCCACCGC	0.657													29	56					0	0	1	0	0	
KIAA1161	57462	broad.mit.edu	37	9	34372554	34372554	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:34372554C>T	uc003zue.3	-	3	555	c.388G>A	c.(388-390)GCC>ACC	p.A130T		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	130	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		CCCAGCAGGGCGCCATCGCGG	0.677													3	7					0	0	1	0	0	
VCP	7415	broad.mit.edu	37	9	35059794	35059794	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:35059794C>T	uc003zvy.2	-	14	2089	c.1700G>A	c.(1699-1701)CGC>CAC	p.R567H	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_Missense_Mutation_p.R236H|VCP_uc010mki.1_Missense_Mutation_p.R522H	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	567					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GGCAGCTTGGCGGGCCTGTAG	0.413													17	56					0	0	1	0	0	
PIGO	84720	broad.mit.edu	37	9	35091530	35091530	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:35091530C>G	uc003zwd.2	-	7	2750	c.2354G>C	c.(2353-2355)GGC>GCC	p.G785A	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Intron|PIGO_uc003zwf.2_Intron|PIGO_uc003zwg.1_Missense_Mutation_p.G348A	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	785					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AGTGGGGGGGCCTGAGAAGGG	0.597													24	59					0	0	1	0	0	
SIT1	27240	broad.mit.edu	37	9	35650182	35650182	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:35650182C>A	uc003zxe.1	-	4	453	c.356G>T	c.(355-357)AGG>ATG	p.R119M	SIT1_uc003zxf.1_RNA	NM_014450	NP_055265	Q9Y3P8	SIT1_HUMAN	SHP2-interacting transmembrane adaptor protein	119	Cytoplasmic (Potential).				regulation of T cell activation|signal transduction	integral to plasma membrane	kinase binding|SH2 domain binding				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTGACTCACCCTGGCAGGGCC	0.577													10	33					2.17888e-05	2.2583e-05	1	1	0	
NPR2	4882	broad.mit.edu	37	9	35792877	35792877	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:35792877G>A	uc003zyd.2	+	1	472	c.472G>A	c.(472-474)GGG>AGG	p.G158R	NPR2_uc010mlb.2_Missense_Mutation_p.G158R	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	158	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	GACACTACACGGGCACTTCAA	0.567													34	63					0	0	1	0	0	
PGM5	5239	broad.mit.edu	37	9	71002450	71002450	+	Missense_Mutation	SNP	G	T	T	rs146547812	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:71002450G>T	uc004agr.2	+	4	872	c.643G>T	c.(643-645)GGT>TGT	p.G215C		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	215					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						TGCCATCAAGGGTTTGCTGAC	0.438													35	63					3.03874e-20	3.42265e-20	1	1	0	
MAMDC2	256691	broad.mit.edu	37	9	72741207	72741207	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:72741207A>T	uc004ahm.2	+	6	1393	c.776A>T	c.(775-777)AAT>ATT	p.N259I	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	259	MAM 2.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GGGAATGACAATGTCTTTTCC	0.557													23	31					0	0	1	0	0	
PRUNE2	158471	broad.mit.edu	37	9	79322953	79322953	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:79322953G>A	uc010mpk.2	-	8	4361	c.4237C>T	c.(4237-4239)CGT>TGT	p.R1413C		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1413					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TGCACATCACGGGAGTCTAGA	0.453													18	28					0	0	1	0	0	
VPS13A	23230	broad.mit.edu	37	9	79824434	79824434	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:79824434C>T	uc004akr.2	+	6	741	c.481C>T	c.(481-483)CGT>TGT	p.R161C	VPS13A_uc004akp.3_Missense_Mutation_p.R161C|VPS13A_uc004akq.3_Missense_Mutation_p.R161C|VPS13A_uc004aks.2_Missense_Mutation_p.R161C	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	161			R -> H (in a colorectal cancer sample; somatic mutation).		Golgi to endosome transport|protein transport	intracellular	protein binding	p.R161H(1)		pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TATCCATATTCGTTATGAAGA	0.274													9	20					0	0	1	0	0	
CEP78	84131	broad.mit.edu	37	9	80858424	80858424	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:80858424G>A	uc004akx.2	+	5	926	c.650G>A	c.(649-651)CGC>CAC	p.R217H	CEP78_uc004aky.3_Missense_Mutation_p.R217H|CEP78_uc010mpp.2_Missense_Mutation_p.R217H|CEP78_uc011lsp.1_Missense_Mutation_p.R130H	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	217					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						GAGAGTCTTCGCTATAGGAGA	0.408													13	28					0	0	1	0	0	
ZCCHC6	79670	broad.mit.edu	37	9	88925684	88925684	+	Silent	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:88925684T>G	uc004aoq.2	-	18	3530	c.3315A>C	c.(3313-3315)CCA>CCC	p.P1105P	ZCCHC6_uc010mqe.2_Silent_p.P43P|ZCCHC6_uc011ltf.1_Intron|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Silent_p.P869P|ZCCHC6_uc004aou.2_Silent_p.P1105P	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	1105					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						ACTTCACAATTGGCACCTTTG	0.343													12	31					0	0	1	0	0	
S1PR3	1903	broad.mit.edu	37	9	91616486	91616486	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:91616486C>T	uc004aqe.2	+	2	767	c.371C>T	c.(370-372)GCG>GTG	p.A124V		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	124	Helical; Name=3; (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						GCCCTTGGGGCGTCCACCTGC	0.567											OREG0019291	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	44					0	0	1	0	0	
FGD3	89846	broad.mit.edu	37	9	95738814	95738814	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:95738814C>T	uc004asw.2	+	3	904	c.276C>T	c.(274-276)TGC>TGT	p.C92C	FGD3_uc004asx.2_Silent_p.C92C|FGD3_uc004asz.2_Silent_p.C92C	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	92					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						ACTTTCCCTGCGAGGAGGGCT	0.652													7	20					0	0	1	0	0	
ZNF169	169841	broad.mit.edu	37	9	97062749	97062749	+	Silent	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:97062749C>A	uc004aum.1	+	5	1014	c.909C>A	c.(907-909)TCC>TCA	p.S303S		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	303	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				GGTATACATCCTCTCTCACTA	0.552													29	78					4.87955e-14	5.37517e-14	1	1	0	
PTCH1	5727	broad.mit.edu	37	9	98238403	98238403	+	Silent	SNP	G	A	A	rs2066830	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:98238403G>A	uc004avk.3	-	12	1829	c.1641C>T	c.(1639-1641)AGC>AGT	p.S547S	PTCH1_uc010mro.2_Silent_p.S396S|PTCH1_uc010mrp.2_Silent_p.S396S|PTCH1_uc010mrq.2_Silent_p.S396S|PTCH1_uc004avl.3_Silent_p.S396S|PTCH1_uc010mrr.2_Silent_p.S481S|PTCH1_uc004avm.3_Silent_p.S546S|PTCH1_uc010mrs.1_Silent_p.S215S	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	547	SSD.|Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				TGAGGGCCACGCTGGCTCCTG	0.592									Basal_Cell_Nevus_syndrome				12	13					0	0	1	0	0	
TBC1D2	55357	broad.mit.edu	37	9	100961816	100961816	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:100961816C>T	uc011lvb.1	-	13	2814	c.2634G>A	c.(2632-2634)CTG>CTA	p.L878L	TBC1D2_uc004ayp.2_Silent_p.L418L|TBC1D2_uc004ayq.2_Silent_p.L867L|TBC1D2_uc004ayr.2_Silent_p.L660L|TBC1D2_uc004ayo.3_3'UTR	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	878	Potential.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GCAGCTGCCGCAGCTGTTTCA	0.637													77	160					0	0	1	0	0	
ANKS6	203286	broad.mit.edu	37	9	101518711	101518711	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:101518711T>C	uc004ayu.2	-	12	2338	c.2317A>G	c.(2317-2319)ACA>GCA	p.T773A	ANKS6_uc004ayt.2_Missense_Mutation_p.T472A|ANKS6_uc004ayv.1_Missense_Mutation_p.T236A|ANKS6_uc004ayw.1_Missense_Mutation_p.T356A|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	773	SAM.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				CCCTCATCTGTGATGGTGCCA	0.567													19	55					0	0	1	0	0	
LPPR1	54886	broad.mit.edu	37	9	104071658	104071658	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:104071658G>T	uc004bbb.2	+	5	950	c.551G>T	c.(550-552)GGG>GTG	p.G184V	LPPR1_uc011lvi.1_Missense_Mutation_p.G160V|LPPR1_uc004bbc.2_Missense_Mutation_p.G184V|LPPR1_uc010mtc.2_Missense_Mutation_p.G168V	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	184						integral to membrane	catalytic activity				0						ATTTGTACTGGGGACCTGGAA	0.498													29	56					1.77063e-15	1.96695e-15	1	1	0	
ALDOB	229	broad.mit.edu	37	9	104193086	104193086	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:104193086C>A	uc004bbk.2	-	2	166	c.84G>T	c.(82-84)AAG>AAT	p.K28N		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	28					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CCAGGATCCCCTTTCCATTGG	0.443													19	28					6.49762e-13	7.1055e-13	1	1	0	
GRIN3A	116443	broad.mit.edu	37	9	104432344	104432344	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:104432344T>C	uc004bbp.1	-	3	2951	c.2350A>G	c.(2350-2352)AAG>GAG	p.K784E	GRIN3A_uc004bbq.1_Missense_Mutation_p.K784E	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	784	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGTATTACCTTGGGGTCATGT	0.383													23	51					0	0	1	0	0	
PAPPA	5069	broad.mit.edu	37	9	119097332	119097332	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:119097332C>T	uc004bjn.2	+	13	3971	c.3590C>T	c.(3589-3591)ACC>ATC	p.T1197I	PAPPA_uc011lxp.1_Missense_Mutation_p.T892I|PAPPA_uc011lxq.1_Missense_Mutation_p.T572I	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1197					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGAGGGGAGACCTACAGCCCT	0.617													28	67					0	0	1	0	0	
DAB2IP	153090	broad.mit.edu	37	9	124329464	124329464	+	Translation_Start_Site	SNP	C	T	T	rs142520673	by1000genomes	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:124329464C>T	uc004bln.2	+	1	66	c.-3C>T	c.(-5--1)CACGC>CATGC			NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform						activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGGGCCCACACGCCATGGAGC	0.582													65	116					0	0	1	0	0	
MORN5	254956	broad.mit.edu	37	9	124936889	124936889	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:124936889G>A	uc004blw.2	+	4	484	c.422G>A	c.(421-423)CGC>CAC	p.R141H	MORN5_uc011lyn.1_Missense_Mutation_p.R141H|MORN5_uc011lyo.1_3'UTR	NM_198469	NP_940871	Q5VZ52	MORN5_HUMAN	MORN repeat containing 5	141											0						TATAGGAACCGCTTTCTAAGA	0.458													28	51					0	0	1	0	0	
PTGS1	5742	broad.mit.edu	37	9	125152626	125152626	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:125152626T>C	uc004bmg.1	+	10	1579	c.1444_splice	c.e10+2	p.G482_splice	PTGS1_uc011lys.1_Splice_Site_p.G420_splice|PTGS1_uc010mwb.1_Splice_Site_p.G336_splice|PTGS1_uc004bmf.1_Splice_Site_p.G445_splice|PTGS1_uc004bmh.1_Splice_Site_p.G373_splice|PTGS1_uc011lyt.1_Splice_Site_p.G373_splice	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1						cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	AGCTCGTAGGTGAGCAGCTGT	0.323													12	25					0	0	1	0	0	
NR5A1	2516	broad.mit.edu	37	9	127265430	127265430	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:127265430C>T	uc004boo.1	-	3	359	c.172G>A	c.(172-174)GAC>AAC	p.D58N		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	58	NR C4-type.|Nuclear receptor.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						TGCGTCTTGTCGATCTTGCAG	0.657													4	8					0	0	1	0	0	
FAM102A	399665	broad.mit.edu	37	9	130710444	130710444	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:130710444C>T	uc004bsx.1	-	6	601	c.522G>A	c.(520-522)ACG>ACA	p.T174T	FAM102A_uc004bsw.1_Silent_p.T32T|FAM102A_uc004bsy.1_Translation_Start_Site	NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	174	Ser-rich.									ovary(1)	1						CACCCTTACACGTCAGCTGCA	0.627													26	48					0	0	1	0	0	
NUP214	8021	broad.mit.edu	37	9	134103717	134103717	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:134103717G>A	uc004cag.2	+	33	6184	c.6073G>A	c.(6073-6075)GGG>AGG	p.G2025R	NUP214_uc004cah.2_Missense_Mutation_p.G2015R|NUP214_uc004cai.2_Missense_Mutation_p.G1455R|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.G851R	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	2025	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AGGAGGATTCGGGTAAGCCCC	0.597			T	DEK|SET|ABL1	AML|T-ALL								11	34					0	0	1	0	0	
BAT2L1	84726	broad.mit.edu	37	9	134319684	134319684	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:134319684G>A	uc004can.3	+	5	637	c.582G>A	c.(580-582)TCG>TCA	p.S194S	BAT2L1_uc004cam.1_Silent_p.S194S	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	194							protein binding				0						TAGATCTGTCGTATGGGCCAG	0.557													4	9					0	0	1	0	0	
GTF3C5	9328	broad.mit.edu	37	9	135929231	135929231	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:135929231G>A	uc004cci.3	+	6	1227	c.890G>A	c.(889-891)CGC>CAC	p.R297H	GTF3C5_uc010mzz.2_Missense_Mutation_p.R172H|GTF3C5_uc004ccj.3_Missense_Mutation_p.R297H	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	297						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		GGCCCCTGGCGCAGCCTATGG	0.493													13	27					0	0	1	0	0	
RALGDS	5900	broad.mit.edu	37	9	136031317	136031317	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:136031317C>T	uc011mcw.1	-	5	513	c.232G>A	c.(232-234)GTA>ATA	p.V78I	GBGT1_uc004ccx.2_Silent_p.Q18Q|GBGT1_uc010nab.2_Silent_p.Q65Q|GBGT1_uc011mcx.1_Silent_p.Q48Q|GBGT1_uc004ccw.2_Silent_p.Q65Q|GBGT1_uc010nac.1_5'UTR|GBGT1_uc004ccy.1_Silent_p.Q65Q	NM_001042368	NP_001035827	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	Error:Variant_position_missing_in_Q12967_after_alignment					nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GCTGAGGGTACTGTGACCTGC	0.562			T	CIITA	PMBL|Hodgkin Lymphona|								31	78					0	0	1	0	0	
SNAPC4	6621	broad.mit.edu	37	9	139274297	139274297	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:139274297C>T	uc004chh.2	-	20	2528	c.2519G>A	c.(2518-2520)AGC>AAC	p.S840N		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	840					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		ACCTGGGGTGCTCTGGGCACT	0.597													4	22					0	0	1	0	0	
SNAPC4	6621	broad.mit.edu	37	9	139277746	139277746	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:139277746C>T	uc004chh.2	-	15	1884	c.1875G>A	c.(1873-1875)ACG>ACA	p.T625T		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	625					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		GCACCGGACTCGTCTCCTCTC	0.721													12	25					0	0	1	0	0	
UAP1L1	91373	broad.mit.edu	37	9	139973715	139973715	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:139973715A>G	uc010ncb.2	+	5	883	c.851A>G	c.(850-852)GAA>GGA	p.E284G	UAP1L1_uc004cla.3_Missense_Mutation_p.E161G	NM_207309	NP_997192	Q3KQV9	UAP1L_HUMAN	UDP-N-acteylglucosamine pyrophosphorylase 1-like	284							nucleotidyltransferase activity			ovary(1)	1	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		CAGGTGGTGGAAAAGGCATAC	0.711													8	36					0	0	1	0	0	
MAN1B1	11253	broad.mit.edu	37	9	139990814	139990814	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:139990814G>A	uc004cld.2	+	4	626	c.591G>A	c.(589-591)CCG>CCA	p.P197P	MAN1B1_uc004clc.2_Silent_p.P98P|MAN1B1_uc011meo.1_Silent_p.P98P|MAN1B1_uc011mep.1_Silent_p.P197P|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	197	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		ATCCCCGCCCGGAAGGAGATC	0.597													15	16					0	0	1	0	0	
COBRA1	25920	broad.mit.edu	37	9	140166984	140166984	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:140166984C>T	uc004cmm.3	+	12	1716	c.1513C>T	c.(1513-1515)CTG>TTG	p.L505L		NM_015456	NP_056271	Q8WX92	NELFB_HUMAN	cofactor of BRCA1	505					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleoplasm	protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.137)	OV - Ovarian serous cystadenocarcinoma(145;9.42e-05)|Epithelial(140;0.000766)		CCGGCACGCGCTGCGGCTCCT	0.701													7	17					0	0	1	0	0	
ARRDC1	92714	broad.mit.edu	37	9	140508883	140508883	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:140508883G>A	uc004cns.2	+	6	825	c.751G>A	c.(751-753)GCC>ACC	p.A251T	ARRDC1_uc004cnt.2_Missense_Mutation_p.A126T|ARRDC1_uc004cnu.2_RNA|ARRDC1_uc004cnv.2_Missense_Mutation_p.A231T|ARRDC1_uc004cnw.2_Missense_Mutation_p.A126T|ARRDC1_uc004cnp.1_Missense_Mutation_p.A251T|ARRDC1_uc004cnq.1_Missense_Mutation_p.A233T|ARRDC1_uc011mfb.1_Missense_Mutation_p.A126T|ARRDC1_uc004cnx.1_Missense_Mutation_p.A126T|ARRDC1_uc004cny.2_RNA	NM_152285	NP_689498	Q8N5I2	ARRD1_HUMAN	arrestin domain containing 1	251											0	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000273)|Epithelial(140;0.000464)		GCCCCAGTCGGCCCTGCCGGG	0.682													41	93					0	0	1	0	0	
GYG2	8908	broad.mit.edu	37	X	2795326	2795326	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:2795326C>T	uc004cqs.1	+	11	1604	c.1322C>T	c.(1321-1323)CCC>CTC	p.P441L	GYG2_uc004cqt.1_Missense_Mutation_p.P410L|GYG2_uc004cqu.1_Missense_Mutation_p.P409L|GYG2_uc004cqv.1_Intron|GYG2_uc004cqw.1_Missense_Mutation_p.P401L|GYG2_uc004cqx.1_Intron|GYG2_uc010ndc.1_Intron	NM_003918	NP_003909	O15488	GLYG2_HUMAN	glycogenin 2 isoform b	441					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|soluble fraction	glycogenin glucosyltransferase activity			ovary(1)|kidney(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTCAGGGACCCCAGTCTGCAG	0.547													16	29					0	0	1	0	0	
NLGN4X	57502	broad.mit.edu	37	X	5821694	5821694	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:5821694G>A	uc010ndh.2	-	5	1526	c.1025C>T	c.(1024-1026)CCG>CTG	p.P342L	NLGN4X_uc004crp.2_Missense_Mutation_p.P362L|NLGN4X_uc004crq.2_Missense_Mutation_p.P342L|NLGN4X_uc010ndi.2_Missense_Mutation_p.P379L|NLGN4X_uc004crr.2_Missense_Mutation_p.P342L|NLGN4X_uc010ndj.2_Missense_Mutation_p.P342L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	342	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GTCGATCACCGGCCCGAAGGC	0.587													35	86					0	0	1	0	0	
TBL1X	6907	broad.mit.edu	37	X	9661211	9661211	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:9661211C>T	uc010ndq.2	+	10	1282	c.914C>T	c.(913-915)ACG>ATG	p.T305M	TBL1X_uc004csq.3_Missense_Mutation_p.T254M|TBL1X_uc010ndr.2_Missense_Mutation_p.T254M|TBL1X_uc004csr.2_Missense_Mutation_p.T305M|TBL1X_uc004css.2_Missense_Mutation_p.T256M	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	305	WD 2.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				CTCTTGGCTACGGGTTCATAT	0.532													46	83					0	0	1	0	0	
SHROOM2	357	broad.mit.edu	37	X	9864116	9864116	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:9864116C>A	uc004csu.1	+	4	2258	c.2168C>A	c.(2167-2169)ACT>AAT	p.T723N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	723	ASD1.				apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GATCCAGACACTGTCCCCCAC	0.672													14	18					7.93312e-07	8.32068e-07	1	1	0	
ARHGAP6	395	broad.mit.edu	37	X	11272825	11272825	+	Silent	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:11272825A>C	uc004cup.1	-	2	1464	c.591T>G	c.(589-591)GGT>GGG	p.G197G	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Silent_p.G197G|ARHGAP6_uc004cum.1_5'UTR|ARHGAP6_uc004cun.1_Silent_p.G17G|ARHGAP6_uc010neb.1_Silent_p.G19G|ARHGAP6_uc011mif.1_5'UTR	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	197					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						AGGTGAAATCACCCTGTAGGC	0.463													7	32					0	0	1	0	0	
ATXN3L	92552	broad.mit.edu	37	X	13337235	13337235	+	Silent	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:13337235A>C	uc010ned.2	-	1	1284	c.819T>G	c.(817-819)ACT>ACG	p.T273T		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	273					protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						CTGAAGCAGGAGTTACACATG	0.438													66	210					0	0	1	0	0	
GPR64	10149	broad.mit.edu	37	X	19028750	19028750	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:19028750G>A	uc004cyx.2	-	17	1410	c.1246C>T	c.(1246-1248)CTG>TTG	p.L416L	GPR64_uc004cyy.2_Silent_p.L413L|GPR64_uc004cyz.2_Silent_p.L402L|GPR64_uc004czb.2_Silent_p.L416L|GPR64_uc004czc.2_Silent_p.L400L|GPR64_uc004czd.2_Silent_p.L392L|GPR64_uc004cze.2_Silent_p.L386L|GPR64_uc004czf.2_Silent_p.L378L|GPR64_uc004cza.2_Silent_p.L394L|GPR64_uc004cyw.2_Silent_p.L400L|GPR64_uc010nfj.2_Silent_p.L386L	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	416	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					AGAGGGGCCAGCATGTCAGGC	0.522													47	117					0	0	1	0	0	
MAP3K15	389840	broad.mit.edu	37	X	19391783	19391783	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:19391783G>T	uc004czk.1	-	22	2866	c.1229C>A	c.(1228-1230)CCC>CAC	p.P410H	MAP3K15_uc004czj.1_Missense_Mutation_p.P370H|MAP3K15_uc004czi.1_5'Flank	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	935							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					TCCCTGTGTGGGCAGGGCCAG	0.677													6	11					2.0095e-06	2.10347e-06	1	1	0	
YY2	404281	broad.mit.edu	37	X	21875411	21875411	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:21875411C>T	uc011mjp.1	+	1	809	c.809C>T	c.(808-810)GCC>GTC	p.A270V	MBTPS2_uc004dae.2_Intron|MBTPS2_uc010nfr.2_Intron|YY2_uc010nfq.2_Missense_Mutation_p.A488V|MBTPS2_uc004dab.2_Intron	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	270	Mediates transcriptional repression.|C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GATTACGCCGCCATGAGAAAA	0.498													89	201					0	0	1	0	0	
PHEX	5251	broad.mit.edu	37	X	22095708	22095708	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:22095708A>G	uc004dah.2	+	5	754	c.551A>G	c.(550-552)AAG>AGG	p.K184R	PHEX_uc011mjr.1_Missense_Mutation_p.K184R|PHEX_uc011mjs.1_Missense_Mutation_p.K87R	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	184	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TCAGAGAGAAAGTTCAGCCTT	0.488													67	160					0	0	1	0	0	
ZFX	7543	broad.mit.edu	37	X	24228545	24228545	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:24228545C>T	uc004dbf.2	+	9	1728	c.1470C>T	c.(1468-1470)TGC>TGT	p.C490C	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Silent_p.C529C|ZFX_uc010nfz.2_Silent_p.C146C	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	490	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CCATTGAATGCGATGAGTGTG	0.443													41	71					0	0	1	0	0	
PDK3	5165	broad.mit.edu	37	X	24523371	24523371	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:24523371T>C	uc004dbg.2	+	5	780	c.551T>C	c.(550-552)ATA>ACA	p.I184T	PDK3_uc004dbh.2_Missense_Mutation_p.I184T	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	184	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						CCTAAACACATAGGAAGTATC	0.453													25	37					0	0	1	0	0	
IL1RAPL1	11141	broad.mit.edu	37	X	29959766	29959766	+	Splice_Site	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:29959766A>C	uc004dby.2	+	9	1566	c.1058_splice	c.e9-2	p.E353_splice		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1						innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TTTTCTTTCTAGAGCTAATGT	0.363													66	107					0	0	1	0	0	
MAGEB3	4114	broad.mit.edu	37	X	30254059	30254059	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:30254059G>T	uc004dca.1	+	5	755	c.18G>T	c.(16-18)AAG>AAT	p.K6N		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	6											0						GGGGTCAGAAGAGTACGCTCC	0.547													18	42					9.16793e-09	9.75193e-09	1	1	0	
DMD	1756	broad.mit.edu	37	X	32717315	32717315	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:32717315G>T	uc004dda.1	-	8	989	c.745C>A	c.(745-747)CAG>AAG	p.Q249K	DMD_uc004dcz.2_Missense_Mutation_p.Q126K|DMD_uc004dcy.1_Missense_Mutation_p.Q245K|DMD_uc004ddb.1_Missense_Mutation_p.Q241K|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.Q241K|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	249					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCCACTTCCTGGATGGCTTCA	0.388													7	87					5.18039e-06	5.39048e-06	1	1	0	
TMEM47	83604	broad.mit.edu	37	X	34675058	34675058	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:34675058G>A	uc004ddh.2	-	1	348	c.89C>T	c.(88-90)GCG>GTG	p.A30V	TMEM47_uc010ngs.2_5'Flank	NM_031442	NP_113630	Q9BQJ4	TMM47_HUMAN	transmembrane protein 47	30	Helical; (Potential).					integral to membrane				lung(1)	1						CAGACACAGCGCCAGGAAGAT	0.682													4	7					0	0	1	0	0	
CXorf22	170063	broad.mit.edu	37	X	35969461	35969461	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:35969461C>T	uc004ddj.2	+	5	929	c.870C>T	c.(868-870)GCC>GCT	p.A290A	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	290										large_intestine(1)|lung(1)|ovary(1)	3						AAGATGATGCCGTGGGAGAAG	0.368													8	16					0	0	1	0	0	
SYTL5	94122	broad.mit.edu	37	X	37955458	37955458	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:37955458A>G	uc004ddu.2	+	10	1567	c.1033A>G	c.(1033-1035)AGC>GGC	p.S345G	SYTL5_uc004ddv.2_Missense_Mutation_p.S345G|SYTL5_uc004ddx.2_Missense_Mutation_p.S345G	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	345					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						AAGCATAAGAAGCAAGTCTGT	0.413													32	59					0	0	1	0	0	
USP9X	8239	broad.mit.edu	37	X	41069787	41069787	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:41069787C>T	uc004dfb.2	+	33	5674	c.5041C>T	c.(5041-5043)CGT>TGT	p.R1681C	USP9X_uc004dfc.2_Missense_Mutation_p.R1681C	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1681					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TGTTAATCTGCGTGAACAACA	0.338													21	63					0	0	1	0	0	
CXorf36	79742	broad.mit.edu	37	X	45013320	45013320	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:45013320C>T	uc004dgg.2	-	4	871	c.796G>A	c.(796-798)GAC>AAC	p.D266N		NM_176819	NP_789789	Q9H7Y0	CX036_HUMAN	hypothetical protein LOC79742 isoform 1	266						extracellular region				lung(1)	1						TAGGCAAGGTCGGCTGCCTGA	0.562													23	64					0	0	1	0	0	
ZNF157	7712	broad.mit.edu	37	X	47272096	47272096	+	Silent	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:47272096T>C	uc004dhr.1	+	4	693	c.624T>C	c.(622-624)CAT>CAC	p.H208H		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	208	C2H2-type 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCATTGCTCATCAGAAAACTC	0.433													20	36					0	0	1	0	0	
UXT	8409	broad.mit.edu	37	X	47516675	47516675	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:47516675C>T	uc004din.2	-	5	319	c.263G>A	c.(262-264)CGC>CAC	p.R88H	UXT_uc004dim.2_Missense_Mutation_p.R100H|LOC100133957_uc011mls.1_5'Flank|LOC100133957_uc011mlt.1_5'Flank	NM_004182	NP_004173	Q9UBK9	UXT_HUMAN	ubiquitously-expressed transcript isoform 2	88					centrosome organization|mitochondrion transport along microtubule|protein folding	centrosome|nucleus|prefoldin complex	beta-tubulin binding|microtubule binding|unfolded protein binding				0						CACATAGATGCGTGAAGTATC	0.358													5	10					0	0	1	0	0	
ZNF630	57232	broad.mit.edu	37	X	47919007	47919007	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:47919007T>G	uc004div.3	-	5	1076	c.824A>C	c.(823-825)AAG>ACG	p.K275T	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.K151T	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	275	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						GAGCTGTGACTTCTTGATAAA	0.383													33	57					0	0	1	0	0	
MAGED1	9500	broad.mit.edu	37	X	51638746	51638746	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:51638746G>A	uc004dpm.2	+	3	738	c.643G>A	c.(643-645)GAC>AAC	p.D215N	MAGED1_uc004dpn.2_Missense_Mutation_p.D271N|MAGED1_uc004dpo.2_Missense_Mutation_p.D215N	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	215					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					CATAGAGACCGACCCAGGTAT	0.527										Multiple Myeloma(10;0.10)			10	19					0	0	1	0	0	
RIBC1	158787	broad.mit.edu	37	X	53453324	53453324	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:53453324C>T	uc004dsk.2	+	3	253	c.100C>T	c.(100-102)CGG>TGG	p.R34W	RIBC1_uc004dsj.1_Missense_Mutation_p.R34W|RIBC1_uc011mog.1_Missense_Mutation_p.R34W	NM_001031745	NP_001026915	Q8N443	RIBC1_HUMAN	RIB43A domain with coiled-coils 1 isoform 1	34											0						CTTCAATGTGCGGAACCGAGT	0.488													3	15					0	0	1	0	0	
RRAGB	10325	broad.mit.edu	37	X	55748700	55748700	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:55748700C>T	uc004dup.2	+	3	859	c.208C>T	c.(208-210)CGT>TGT	p.R70C	RRAGB_uc004duq.2_Missense_Mutation_p.R70C	NM_016656	NP_057740	Q5VZM2	RRAGB_HUMAN	Ras-related GTP binding B long isoform	70					cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade|signal transduction	Golgi apparatus|lysosome|nucleus	GTP binding|protein binding				0						CAGAGACACACGTCGCCTTGG	0.398													21	49					0	0	1	0	0	
EDA2R	60401	broad.mit.edu	37	X	65824948	65824948	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:65824948C>A	uc004dwq.2	-	2	219	c.208G>T	c.(208-210)GTT>TTT	p.V70F	EDA2R_uc004dwr.2_Missense_Mutation_p.V70F|EDA2R_uc004dws.2_Missense_Mutation_p.V70F|EDA2R_uc011mpb.1_RNA|EDA2R_uc011mpc.1_Intron|EDA2R_uc010nkt.1_Missense_Mutation_p.V70F|EDA2R_uc004dwt.1_Missense_Mutation_p.V70F	NM_021783	NP_068555	Q9HAV5	TNR27_HUMAN	X-linked ectodysplasin receptor	70	Extracellular (Potential).|TNFR-Cys 2.				cell differentiation|embryo development|epidermis development|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	tumor necrosis factor receptor activity			upper_aerodigestive_tract(1)	1						ACCTTCTGAACACGATTGATG	0.527													5	18					0.00116845	0.00119109	1	1	0	
XIST	7503	broad.mit.edu	37	X	73064010	73064010	+	RNA	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:73064010A>G	uc004ebm.1	-	1		c.8579T>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGCCAAGAAAAGGGGACTTAG	0.438													41	95					0	0	1	0	0	
TAF9B	51616	broad.mit.edu	37	X	77387182	77387182	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:77387182C>T	uc004eda.2	-	7	752	c.681G>A	c.(679-681)TCG>TCA	p.S227S		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	227					negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						TGTTCTGTGACGAAACCATGT	0.368													45	104					0	0	1	0	0	
TAF9B	51616	broad.mit.edu	37	X	77393320	77393320	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:77393320C>T	uc004eda.2	-	4	402	c.331G>A	c.(331-333)GCA>ACA	p.A111T		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	111					negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						CTAGGTCCTGCATATGGCTTA	0.338													20	66					0	0	1	0	0	
FAM133A	286499	broad.mit.edu	37	X	92965080	92965080	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:92965080A>T	uc004efr.1	+	4	975	c.662A>T	c.(661-663)AAA>ATA	p.K221I		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	221	Lys-rich.										0						GCAAAGGAAAAAGTAaagaag	0.274													13	25					0	0	1	0	0	
RPA4	29935	broad.mit.edu	37	X	96139979	96139979	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:96139979C>T	uc004efv.3	+	1	968	c.670C>T	c.(670-672)CGG>TGG	p.R224W	DIAPH2_uc004eft.3_Intron|DIAPH2_uc004efu.3_Intron|DIAPH2_uc004efs.2_Intron	NM_013347	NP_037479	Q13156	RFA4_HUMAN	replication protein A4, 34kDa	224					DNA damage checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair	DNA replication factor A complex|nucleoplasm	single-stranded DNA binding				0						CCATGAGCTCCGGGCTCAGCT	0.522								Other_identified_genes_with_known_or_suspected_DNA_repair_function					33	83					0	0	1	0	0	
ZMAT1	84460	broad.mit.edu	37	X	101138490	101138490	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:101138490C>A	uc004eim.2	-	2	4894	c.1396G>T	c.(1396-1398)GGA>TGA	p.G466*	ZMAT1_uc011mrl.1_Nonsense_Mutation_p.G637*|ZMAT1_uc004ein.2_Nonsense_Mutation_p.G466*|ZMAT1_uc011mrm.1_Nonsense_Mutation_p.G466*	NM_032441	NP_115817	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 3	466						nucleus	zinc ion binding			ovary(1)	1						ATTCAAAATCCAAGAATAGAC	0.353													5	74					0.014758	0.0148996	1	1	0	
CXorf41	139212	broad.mit.edu	37	X	106482225	106482225	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:106482225G>A	uc004enc.2	+	6	565	c.503G>A	c.(502-504)CGT>CAT	p.R168H	CXorf41_uc004end.2_Missense_Mutation_p.R168H	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	168											0						CTTGACCTTCGTACTCCTCAG	0.284													15	44					0	0	1	0	0	
KIAA1210	57481	broad.mit.edu	37	X	118222649	118222649	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:118222649T>G	uc004era.3	-	11	2544	c.2544A>C	c.(2542-2544)GAA>GAC	p.E848D		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	848										ovary(4)|skin(1)	5						CTGTGAAGACTTCTGCATCTT	0.488													15	19					0	0	1	0	0	
GLUD2	2747	broad.mit.edu	37	X	120183165	120183165	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:120183165A>G	uc004eto.2	+	1	1704	c.1627A>G	c.(1627-1629)ATT>GTT	p.I543V		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	543					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	TGTCAATGCCATTGAAAAAGT	0.458													51	90					0	0	1	0	0	
IGSF1	3547	broad.mit.edu	37	X	130419306	130419306	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:130419306C>T	uc004ewd.2	-	5	752	c.514G>A	c.(514-516)GTG>ATG	p.V172M	IGSF1_uc004ewe.3_Missense_Mutation_p.V161M|IGSF1_uc004ewf.2_Missense_Mutation_p.V152M|IGSF1_uc004ewg.2_Missense_Mutation_p.V172M	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	172	Ig-like C2-type 2.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGGTAATCCACAGGCTCTGCA	0.493													24	115					0	0	1	0	0	
SLC9A6	10479	broad.mit.edu	37	X	135067850	135067850	+	Silent	SNP	C	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:135067850C>T	uc004ezj.2	+	1	265	c.189C>T	c.(187-189)GCC>GCT	p.A63A	SLC9A6_uc004ezk.2_Silent_p.A63A|SLC9A6_uc011mvx.1_Silent_p.A11A	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	63					regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGAAGCAAGCCGAGGAGAGCC	0.642													52	107					0	0	1	0	0	
MCF2	4168	broad.mit.edu	37	X	138667228	138667228	+	Silent	SNP	G	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:138667228G>A	uc004fau.2	-	24	3036	c.2742C>T	c.(2740-2742)CTC>CTT	p.L914L	MCF2_uc004fav.2_Silent_p.L930L|MCF2_uc011mwl.1_Silent_p.L891L|MCF2_uc010nsh.1_Intron|MCF2_uc011mwm.1_Intron|MCF2_uc011mwn.1_Intron|MCF2_uc004faw.2_Silent_p.L974L|MCF2_uc011mwo.1_Silent_p.L990L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	914					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TACTAACCATGAGGGGCCTAT	0.373													34	77					0	0	1	0	0	
MAGEC1	9947	broad.mit.edu	37	X	140996328	140996328	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:140996328A>C	uc004fbt.2	+	4	3424	c.3138A>C	c.(3136-3138)AAA>AAC	p.K1046N	MAGEC1_uc010nsl.1_Missense_Mutation_p.K113N	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1046	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCACTAAAGTTTGGGTGC	0.552										HNSCC(15;0.026)			43	96					0	0	1	0	0	
MAGEC1	9947	broad.mit.edu	37	X	140996374	140996374	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:140996374T>C	uc004fbt.2	+	4	3470	c.3184T>C	c.(3184-3186)TCT>CCT	p.S1062P	MAGEC1_uc010nsl.1_Missense_Mutation_p.S129P	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1062	MAGE.						protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGCCCAACTCTTCTCCTCC	0.512										HNSCC(15;0.026)			55	103					0	0	1	0	0	
SPANXN1	494118	broad.mit.edu	37	X	144329135	144329135	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:144329135G>T	uc004fcb.2	+	1	29	c.29G>T	c.(28-30)GGG>GTG	p.G10V		NM_001009614	NP_001009614	Q5VSR9	SPXN1_HUMAN	SPANX-N1 protein	10											0	Acute lymphoblastic leukemia(192;6.56e-05)					AGCATCAATGGGGAGAAGAGG	0.338													45	117					5.20006e-24	5.8949e-24	1	1	0	
MAGEA1	4100	broad.mit.edu	37	X	152482876	152482876	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:152482876C>A	uc004fhf.2	-	3	355	c.135G>T	c.(133-135)GAG>GAT	p.E45D		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	45						cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGTGGGCACCTCCTCCAGGG	0.632													62	109					1.08141e-31	1.23522e-31	1	1	0	
TREX2	11219	broad.mit.edu	37	X	152710795	152710795	+	Missense_Mutation	SNP	G	T	T	rs151053685		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:152710795G>T	uc010nue.1	-	3	336	c.220C>A	c.(220-222)CTC>ATC	p.L74I	TREX2_uc010nud.1_Missense_Mutation_p.L32I|TREX2_uc011myp.1_Missense_Mutation_p.L32I|HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA	NM_080701	NP_542432	Q9BQ50	TREX2_HUMAN	three prime repair exonuclease 2	75					DNA repair	nucleus	3'-5'-exodeoxyribonuclease activity|exodeoxyribonuclease III activity|nucleic acid binding			large_intestine(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACAGCAAAGAGGGACAGCTCG	0.637								Editing_and_processing_nucleases					8	9					0.0381472	0.0384028	1	1	0	
MXRA8	54587	broad.mit.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:1290110delG	uc001aew.2	-	5	932	c.901delC	c.(901-903)CGGfs	p.R301fs	MXRA8_uc001aex.3_Frame_Shift_Del_p.R301fs|MXRA8_uc001aey.3_Frame_Shift_Del_p.R301fs|MXRA8_uc010nyl.1_Frame_Shift_Del_p.R301fs|MXRA8_uc001aez.2_Frame_Shift_Del_p.R200fs|MXRA8_uc001afa.2_Frame_Shift_Del_p.R292fs	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	301	Extracellular (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GGAGAGCCCCGGGGGGGCGGC	0.741													15	10	---	---	---	---						.
ERRFI1	54206	broad.mit.edu	37	1	8074255	8074255	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:8074255delT	uc001aoz.2	-	4	653	c.404delA	c.(403-405)AACfs	p.N135fs	ERRFI1_uc001apa.1_Frame_Shift_Del_p.N60fs	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	135					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		GGAAGGGGAGTTTTTTATGGG	0.502													58	93	---	---	---	---						.
CLSPN	63967	broad.mit.edu	37	1	36215282	36215283	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:36215282_36215283delGA	uc001bzi.2	-	11	2238_2239	c.2158_2159delTC	c.(2158-2160)TCAfs	p.S720fs	CLSPN_uc009vux.2_Frame_Shift_Del_p.S656fs	NM_022111	NP_071394	Q9HAW4	CLSPN_HUMAN	claspin	720					activation of protein kinase activity|cell cycle|cellular component disassembly involved in apoptosis|DNA repair|DNA replication|G2/M transition DNA damage checkpoint|mitotic cell cycle DNA replication checkpoint|peptidyl-serine phosphorylation	nucleoplasm	anaphase-promoting complex binding|DNA binding			breast(2)|ovary(2)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)	8		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGAATCTGATGAGAGAGACTTG	0.381													22	33	---	---	---	---						.
EPS8L3	79574	broad.mit.edu	37	1	110300580	110300580	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:110300580delT	uc001dyr.1	-	9	963	c.818delA	c.(817-819)AACfs	p.N273fs	EPS8L3_uc001dys.1_Frame_Shift_Del_p.N273fs|EPS8L3_uc001dyq.1_Frame_Shift_Del_p.N274fs|EPS8L3_uc009wfm.1_Frame_Shift_Del_p.N240fs|EPS8L3_uc009wfn.1_Frame_Shift_Del_p.N248fs|EPS8L3_uc009wfo.1_Frame_Shift_Del_p.N220fs	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	273						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		CTGGTCCTTGTTTTTTTTCCC	0.542													56	76	---	---	---	---						.
FCRL5	83416	broad.mit.edu	37	1	157490981	157490981	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:157490981delG	uc001fqu.2	-	11	2499	c.2341delC	c.(2341-2343)CTGfs	p.L781fs	FCRL5_uc009wsm.2_Frame_Shift_Del_p.L781fs	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	781	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TACAGGATCAGGGGAGAGCCT	0.612													28	64	---	---	---	---						.
NIT1	4817	broad.mit.edu	37	1	161090341	161090342	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:161090341_161090342delCA	uc001fxv.1	+	7	846_847	c.770_771delCA	c.(769-771)GCAfs	p.A257fs	PFDN2_uc001fxu.2_5'Flank|NIT1_uc001fxw.2_Intron|NIT1_uc001fxx.1_Frame_Shift_Del_p.A221fs|NIT1_uc001fxy.1_Frame_Shift_Del_p.A221fs|NIT1_uc010pka.1_Frame_Shift_Del_p.A242fs	NM_005600	NP_005591	Q86X76	NIT1_HUMAN	nitrilase 1	257	CN hydrolase.				nitrogen compound metabolic process	mitochondrion	nitrilase activity				0	all_cancers(52;3.39e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GTGGCAGCAGCACAGTGTGGAC	0.574													26	56	---	---	---	---						.
B3GALNT2	148789	broad.mit.edu	37	1	235613601	235613603	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:235613601_235613603delGAG	uc001hxc.2	-	12	1650_1652	c.1421_1423delCTC	c.(1420-1425)CCTCAG>CAG	p.P474del		NM_152490	NP_689703	Q8NCR0	B3GL2_HUMAN	beta-1,3-N-acetylgalactosaminyltransferase 2	474	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			breast(1)	1	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.0539)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000117)			GGAGAATACTGAGGAGAAGACAG	0.478													29	49	---	---	---	---						.
OPN3	23596	broad.mit.edu	37	1	241767800	241767801	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr1:241767800_241767801insA	uc001hza.2	-	2	599_600	c.454_455insT	c.(454-456)TCCfs	p.S152fs	OPN3_uc001hzb.2_RNA|OPN3_uc001hzc.2_Intron	NM_014322	NP_055137	Q9H1Y3	OPN3_HUMAN	opsin 3	152	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|visual perception	integral to plasma membrane	G-protein coupled photoreceptor activity				0	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			CCAGGCCCAGGAAAAATTGATC	0.540													18	38	---	---	---	---						.
ZNF438	220929	broad.mit.edu	37	10	31133959	31133959	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:31133959delT	uc010qdz.1	-	8	2853	c.2418delA	c.(2416-2418)AAAfs	p.K806fs	ZNF438_uc001ivn.2_Frame_Shift_Del_p.K757fs|ZNF438_uc010qdy.1_Frame_Shift_Del_p.K796fs|ZNF438_uc001ivo.3_Frame_Shift_Del_p.K370fs|ZNF438_uc009xlg.2_Frame_Shift_Del_p.K806fs|ZNF438_uc001ivp.3_Frame_Shift_Del_p.K796fs|ZNF438_uc010qea.1_Frame_Shift_Del_p.K806fs|ZNF438_uc010qeb.1_Frame_Shift_Del_p.K806fs	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	806					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				TAGCCCACAGTTTGGAAGGGT	0.512													83	182	---	---	---	---						.
JMJD1C	221037	broad.mit.edu	37	10	64974641	64974641	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:64974641delT	uc001jmn.2	-	8	1586	c.1286delA	c.(1285-1287)AATfs	p.N429fs	JMJD1C_uc001jml.2_Frame_Shift_Del_p.N210fs|JMJD1C_uc001jmm.2_Frame_Shift_Del_p.N141fs|JMJD1C_uc010qiq.1_Frame_Shift_Del_p.N247fs|JMJD1C_uc009xpi.2_Frame_Shift_Del_p.N247fs|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Frame_Shift_Del_p.N141fs	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	429					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					AGGCTGGCTATTTTTTAGGGT	0.363													22	48	---	---	---	---						.
C10orf54	64115	broad.mit.edu	37	10	73511467	73511467	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr10:73511467delG	uc001jsd.2	-	6	997	c.856delC	c.(856-858)CTGfs	p.L286fs	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Frame_Shift_Del_p.L154fs|C10orf54_uc009xqm.2_Frame_Shift_Del_p.L124fs	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	286	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						GGAGGAGACAGGGGGGTGCTG	0.617													17	30	---	---	---	---						.
MUC6	4588	broad.mit.edu	37	11	1026400	1026401	+	Frame_Shift_Ins	INS	-	G	G			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:1026400_1026401insG	uc001lsw.2	-	20	2523_2524	c.2472_2473insC	c.(2470-2475)CCCGAGfs	p.P824fs		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	824_825					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGCACTCCTCGGGGGGCACAC	0.649													12	20	---	---	---	---						.
KCNA4	3739	broad.mit.edu	37	11	30033563	30033563	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:30033563delA	uc001msk.2	-	2	1815	c.663delT	c.(661-663)TTTfs	p.F221fs		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	221						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGTTCCTGTCAAAAAAATACT	0.468													32	54	---	---	---	---						.
KCNA4	3739	broad.mit.edu	37	11	30034059	30034059	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:30034059delC	uc001msk.2	-	2	1319	c.167delG	c.(166-168)GGTfs	p.G56fs		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	56						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCCACCAGAACCCCCGCTACC	0.706													31	61	---	---	---	---						.
EXT2	2132	broad.mit.edu	37	11	44097139	44097139	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:44097139delG	uc010rfo.1	+	1	64	c.51delG	c.(49-51)CCGfs	p.P17fs	ACCS_uc010rfm.1_Frame_Shift_Del_p.G112fs|ACCS_uc009yks.1_Frame_Shift_Del_p.G185fs|ACCS_uc010rfn.1_3'UTR|ACCS_uc001mxx.2_Frame_Shift_Del_p.G185fs	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						GTGTGAGGCCGGGGGTAAGTG	0.582			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				25	43	---	---	---	---						.
RTN3	10313	broad.mit.edu	37	11	63486964	63486967	+	Frame_Shift_Del	DEL	TGAT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:63486964_63486967delTGAT	uc001nxq.2	+	3	1177_1180	c.990_993delTGAT	c.(988-993)AATGATfs	p.N330fs	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Frame_Shift_Del_p.N311fs|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Frame_Shift_Del_p.N218fs|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	330_331					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						GATGCGTGAATGATATGCATAACT	0.431													21	48	---	---	---	---						.
PPP1R14B	26472	broad.mit.edu	37	11	64014044	64014044	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:64014044delG	uc001nza.2	-	1	370	c.102delC	c.(100-102)CCCfs	p.P34fs		NM_138689	NP_619634	Q96C90	PP14B_HUMAN	protein phosphatase 1 regulatory subunit 14B	34					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0						CTGCGGCCCCGGGGGGGCTCT	0.547													6	7	---	---	---	---						.
PPP2R5B	5526	broad.mit.edu	37	11	64693273	64693273	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:64693273delC	uc001oby.2	+	2	652	c.67delC	c.(67-69)CCCfs	p.P23fs	PPP2R5B_uc001obz.2_Frame_Shift_Del_p.P23fs	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	23					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						GTCGCCTGTGCCCCCACCCGA	0.697													7	10	---	---	---	---						.
SSH3	54961	broad.mit.edu	37	11	67079247	67079252	+	In_Frame_Del	DEL	GCAGGG	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:67079247_67079252delGCAGGG	uc001okj.2	+	14	2047_2052	c.1869_1874delGCAGGG	c.(1867-1875)GAGCAGGGG>GAG	p.QG630del	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_In_Frame_Del_p.QG484del	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	630_631					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			aggagcaggagcaggggcaggggcag	0.544													19	32	---	---	---	---						.
SHANK2	22941	broad.mit.edu	37	11	70333007	70333007	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:70333007delC	uc001oqc.2	-	21	3469	c.3391delG	c.(3391-3393)GATfs	p.D1131fs	SHANK2_uc010rqn.1_Frame_Shift_Del_p.D543fs|SHANK2_uc001opz.2_Frame_Shift_Del_p.D536fs|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	752					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TCAGCAAAATCCCCCTCCTCG	0.682													19	42	---	---	---	---						.
CEP57	9702	broad.mit.edu	37	11	95564332	95564332	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr11:95564332delA	uc001pfp.1	+	11	1636	c.1415delA	c.(1414-1416)GAAfs	p.E472fs	CEP57_uc010ruh.1_Frame_Shift_Del_p.E463fs|CEP57_uc010rui.1_Frame_Shift_Del_p.E446fs|CEP57_uc009ywn.1_Frame_Shift_Del_p.E320fs|CEP57_uc001pfq.1_Frame_Shift_Del_p.E446fs|CEP57_uc001pfr.1_Frame_Shift_Del_p.E320fs	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	472	Mediates interaction with microtubules (By similarity).|Potential.				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGACCTGGAGAAAAAAGGAGA	0.383									Mosaic_Variegated_Aneuploidy_Syndrome				18	29	---	---	---	---						.
MAP3K12	7786	broad.mit.edu	37	12	53877706	53877708	+	In_Frame_Del	DEL	CCT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:53877706_53877708delCCT	uc001sdm.1	-	9	1344_1346	c.1246_1248delAGG	c.(1246-1248)AGGdel	p.R416del	MAP3K12_uc001sdn.1_In_Frame_Del_p.R449del	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	416					histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						TGAGCTCCTCCCTCCTCCTCATC	0.542													64	130	---	---	---	---						.
NAA25	80018	broad.mit.edu	37	12	112492200	112492202	+	In_Frame_Del	DEL	ATC	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr12:112492200_112492202delATC	uc001ttm.2	-	14	1638_1640	c.1618_1620delGAT	c.(1618-1620)GATdel	p.D540del	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_In_Frame_Del_p.D512del|NAA25_uc009zwa.1_In_Frame_Del_p.D540del	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	540						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						ACCCAATGGTATCATGCTGGATA	0.424													18	34	---	---	---	---						.
SACS	26278	broad.mit.edu	37	13	23908934	23908934	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:23908934delA	uc001uon.2	-	10	9670	c.9081delT	c.(9079-9081)TTTfs	p.F3027fs	SACS_uc001uoo.2_Frame_Shift_Del_p.F2880fs|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3027					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GTAAATTGTCAAAAAATGGTC	0.358													27	46	---	---	---	---						.
C13orf33	84935	broad.mit.edu	37	13	31480852	31480852	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:31480852delG	uc001uth.3	+	1	541	c.200delG	c.(199-201)CGGfs	p.R67fs	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	67											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		gcggcggcgcgggggggcTTC	0.582													3	5	---	---	---	---						.
AKAP11	11215	broad.mit.edu	37	13	42874500	42874500	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:42874500delA	uc001uys.1	+	8	1793	c.1618delA	c.(1618-1620)AAAfs	p.K540fs		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	540					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		AAATAAATCTAAAAATAAATC	0.284													17	22	---	---	---	---						.
DIS3	22894	broad.mit.edu	37	13	73352362	73352363	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:73352362_73352363delTT	uc001vix.3	-	3	916_917	c.542_543delAA	c.(541-543)AAAfs	p.K181fs	DIS3_uc001viy.3_Frame_Shift_Del_p.K151fs|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	181	PINc.				CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		TGGCTTTCTCTTTGTTTCTCCT	0.361										Multiple Myeloma(4;0.011)			20	32	---	---	---	---						.
SLC15A1	6564	broad.mit.edu	37	13	99354751	99354751	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:99354751delT	uc001vno.2	-	18	1526	c.1449delA	c.(1447-1449)AAAfs	p.K483fs		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	483	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CATTTTCCCCTTTTTCTGGCT	0.254													42	81	---	---	---	---						.
UPF3A	65110	broad.mit.edu	37	13	115051799	115051800	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr13:115051799_115051800delAG	uc001vup.2	+	4	481_482	c.444_445delAG	c.(442-447)GTAGAGfs	p.V148fs	UPF3A_uc001vuq.2_Intron|UPF3A_uc001vus.2_Intron|UPF3A_uc001vur.2_RNA|UPF3A_uc001vut.2_5'UTR|UPF3A_uc001vuu.2_5'UTR	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	148_149					mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		CTGCAGTGGTAGAGTTTGCTCC	0.406													32	67	---	---	---	---						.
C14orf37	145407	broad.mit.edu	37	14	58598353	58598353	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:58598353delC	uc001xdc.2	-	4	1819	c.1708delG	c.(1708-1710)GAAfs	p.E570fs	C14orf37_uc010tro.1_Frame_Shift_Del_p.E608fs|C14orf37_uc001xdd.2_Frame_Shift_Del_p.E570fs|C14orf37_uc001xde.2_Frame_Shift_Del_p.E570fs	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	570	Extracellular (Potential).					integral to membrane	binding				0						ATGCTGGGTTCCCCCACCATT	0.493													26	59	---	---	---	---						.
DLST	1743	broad.mit.edu	37	14	75359617	75359617	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:75359617delC	uc001xqv.2	+	8	586	c.523delC	c.(523-525)CCCfs	p.P175fs	DLST_uc001xqu.2_Frame_Shift_Del_p.P87fs|DLST_uc001xqt.2_Frame_Shift_Del_p.P91fs|DLST_uc010tuw.1_Frame_Shift_Del_p.P89fs|DLST_uc001xqs.2_RNA|DLST_uc010tuv.1_Frame_Shift_Del_p.P175fs	NM_001933	NP_001924	P36957	ODO2_HUMAN	dihydrolipoamide S-succinyltransferase (E2	175					lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	dihydrolipoyllysine-residue succinyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00698)		GGCAGTTCCTCCCCCTGCAGC	0.577													26	38	---	---	---	---						.
EML1	2009	broad.mit.edu	37	14	100402660	100402660	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:100402660delA	uc001ygs.2	+	19	2153	c.2084delA	c.(2083-2085)GAAfs	p.E695fs	EML1_uc010tww.1_Frame_Shift_Del_p.E683fs|EML1_uc001ygr.2_Frame_Shift_Del_p.E714fs	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	695	WD 9.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				GGAGACTACGAAATCCTCTAC	0.507													11	22	---	---	---	---						.
ADAM6	8755	broad.mit.edu	37	14	106405444	106405448	+	RNA	DEL	AAAAC	-	-	rs77404616		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr14:106405444_106405448delAAAAC	uc010tyt.1	-	2359		c.42471_42475delGTTTT								Parts of antibodies, mostly variable regions.												0						aaaaaaaaaaaaaacaacaaCAGTT	0.254													2	4	---	---	---	---						.
MKRN3	7681	broad.mit.edu	37	15	23811404	23811405	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:23811404_23811405insC	uc001ywh.3	+	1	951_952	c.475_476insC	c.(475-477)GCCfs	p.A159fs	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Frame_Shift_Ins_p.A159fs	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	159						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		AGTGGCGGAAGCCCCCCCGGCT	0.644													20	44	---	---	---	---						.
MTMR10	54893	broad.mit.edu	37	15	31234037	31234038	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:31234037_31234038delCA	uc001zfh.1	-	16	2067_2068	c.1969_1970delTG	c.(1969-1971)TGGfs	p.W657fs	MTMR15_uc001zff.2_3'UTR|MTMR15_uc001zfe.2_3'UTR|MTMR10_uc010ubk.1_Frame_Shift_Del_p.W71fs|MTMR10_uc001zfg.1_Frame_Shift_Del_p.W238fs|MTMR10_uc010azx.1_Frame_Shift_Del_p.W409fs|MTMR10_uc001zfi.1_3'UTR	NM_017762	NP_060232	Q9NXD2	MTMRA_HUMAN	myotubularin related protein 10	657	Myotubularin phosphatase.						phosphatase activity			ovary(1)	1		all_lung(180;2.81e-11)		all cancers(64;7.26e-15)|Epithelial(43;7.2e-11)|GBM - Glioblastoma multiforme(186;0.000158)|BRCA - Breast invasive adenocarcinoma(123;0.00426)|Lung(196;0.174)		GCACAGTTTCCACAGTTTTATG	0.525													22	33	---	---	---	---						.
MGA	23269	broad.mit.edu	37	15	42042041	42042041	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:42042041delA	uc010ucy.1	+	17	6417	c.6236delA	c.(6235-6237)GAAfs	p.E2079fs	MGA_uc010ucz.1_Frame_Shift_Del_p.E1870fs|MGA_uc010uda.1_Frame_Shift_Del_p.E695fs|MGA_uc001zoi.2_Frame_Shift_Del_p.E293fs	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2040	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AGTTCCAAAGAAAAAGTGGCT	0.368													14	31	---	---	---	---						.
ATP8B4	79895	broad.mit.edu	37	15	50264853	50264853	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr15:50264853delA	uc001zxu.2	-	13	1311	c.1169delT	c.(1168-1170)TTCfs	p.F390fs	ATP8B4_uc010ber.2_Frame_Shift_Del_p.F263fs|ATP8B4_uc010ufd.1_Frame_Shift_Del_p.F263fs|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	390	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TTTGTCGGAGAAAATGTACTC	0.423													17	33	---	---	---	---						.
TMC5	79838	broad.mit.edu	37	16	19498596	19498596	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:19498596delT	uc002dgc.3	+	17	3270	c.2521delT	c.(2521-2523)TTTfs	p.F841fs	TMC5_uc010vaq.1_Frame_Shift_Del_p.F789fs|TMC5_uc002dgb.3_Frame_Shift_Del_p.F841fs|TMC5_uc010var.1_Frame_Shift_Del_p.F841fs|TMC5_uc002dgd.1_Frame_Shift_Del_p.F595fs|TMC5_uc002dge.3_Frame_Shift_Del_p.F595fs|TMC5_uc002dgf.3_Frame_Shift_Del_p.F524fs|TMC5_uc002dgg.3_Frame_Shift_Del_p.F482fs	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	841	Helical; (Potential).					integral to membrane				skin(1)	1						CTTCTTGCTCTTTTTCCCATC	0.547													23	49	---	---	---	---						.
MTSS1L	92154	broad.mit.edu	37	16	70698147	70698147	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:70698147delG	uc002ezj.2	-	15	1937	c.1677delC	c.(1675-1677)CCCfs	p.P559fs		NM_138383	NP_612392	Q765P7	MTSSL_HUMAN	metastasis suppressor 1-like	559					filopodium assembly|signal transduction		actin binding|cytoskeletal adaptor activity|SH3 domain binding			central_nervous_system(1)	1						TGGCCACGCCGGGGGGTGCGC	0.761													11	20	---	---	---	---						.
ZCCHC14	23174	broad.mit.edu	37	16	87445211	87445211	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr16:87445211delT	uc002fjz.1	-	12	2732	c.2705delA	c.(2704-2706)AAGfs	p.K902fs	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Frame_Shift_Del_p.K678fs	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	902					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GTTCCCGCTCTTTTTGTGACT	0.592													39	89	---	---	---	---						.
TP53	7157	broad.mit.edu	37	17	7578475	7578475	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:7578475delG	uc002gim.2	-	5	649	c.455delC	c.(454-456)CCGfs	p.P152fs	TP53_uc002gig.1_Frame_Shift_Del_p.P152fs|TP53_uc002gih.2_Frame_Shift_Del_p.P152fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.P20fs|TP53_uc010cng.1_Frame_Shift_Del_p.P20fs|TP53_uc002gii.1_Frame_Shift_Del_p.P20fs|TP53_uc010cnh.1_Frame_Shift_Del_p.P152fs|TP53_uc010cni.1_Frame_Shift_Del_p.P152fs|TP53_uc002gij.2_Frame_Shift_Del_p.P152fs|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Frame_Shift_Del_p.P59fs|TP53_uc002gio.2_Frame_Shift_Del_p.P20fs|TP53_uc010vug.1_Frame_Shift_Del_p.P113fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	152	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		P -> R (in sporadic cancers; somatic mutation).|P -> T (in sporadic cancers; somatic mutation).|P -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|P -> Q (in sporadic cancers; somatic mutation).|P -> S (in sporadic cancers; somatic mutation).|P -> A (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P152L(57)|p.P152S(21)|p.P152fs*18(17)|p.P152T(7)|p.0?(7)|p.P152fs*29(5)|p.P152P(5)|p.P152Q(4)|p.P153fs*28(4)|p.P152fs*14(4)|p.P152fs*28(3)|p.P152R(3)|p.T150fs*16(3)|p.P152A(2)|p.P153fs*16(1)|p.P151_V173del23(1)|p.P152_P153del(1)|p.D148_T155delDSTPPPGT(1)|p.T150_P153delTPPP(1)|p.D148fs*23(1)|p.P152del(1)|p.S149fs*72(1)|p.S149fs*17(1)|p.Q144_G154del11(1)|p.P152_P153insXXX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGTGCCGGGCGGGGGTGTGGA	0.612		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			23	53	---	---	---	---						.
MYO18A	399687	broad.mit.edu	37	17	27493332	27493332	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:27493332delG	uc002hdt.1	-	2	785	c.627delC	c.(625-627)CCCfs	p.P209fs	MYO18A_uc010csa.1_Frame_Shift_Del_p.P209fs|MYO18A_uc002hdu.1_Frame_Shift_Del_p.P209fs	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	209					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			GGGGCACCACGGGGGGCAGGC	0.662													39	54	---	---	---	---						.
KRTAP9-8	83901	broad.mit.edu	37	17	39394461	39394461	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:39394461delA	uc002hwh.3	+	1	192	c.158delA	c.(157-159)CAAfs	p.Q53fs	KRTAP9-9_uc010wfq.1_Intron	NM_031963	NP_114169	Q9BYQ0	KRA98_HUMAN	keratin associated protein 9.8	53	6.|15 X 5 AA repeats of C-C-[RQVSGE]- [SPSNQ]-[TASPI].					keratin filament				ovary(1)	1		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			ACTTGCTGTCAAAACACCTGC	0.632													25	56	---	---	---	---						.
TBCD	6904	broad.mit.edu	37	17	80721910	80721911	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr17:80721910_80721911insT	uc002kfz.2	+	3	435_436	c.305_306insT	c.(304-306)GCTfs	p.A102fs	TBCD_uc002kfx.1_Frame_Shift_Ins_p.A85fs|TBCD_uc002kfy.1_Frame_Shift_Ins_p.A102fs	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	102					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			GTACATCTGGCTTTTAAATTTC	0.376													15	13	---	---	---	---						.
ROCK1	6093	broad.mit.edu	37	18	18629104	18629105	+	Frame_Shift_Ins	INS	-	A	A	rs35810558		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:18629104_18629105insA	uc002kte.2	-	4	1303_1304	c.362_363insT	c.(361-363)TTCfs	p.F121fs		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	121	Protein kinase.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					TTTCTTCCCAGAAAAAAGCAGA	0.361													35	48	---	---	---	---						.
CBLN2	147381	broad.mit.edu	37	18	70209335	70209335	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr18:70209335delC	uc002lku.2	-	2	296	c.61delG	c.(61-63)GCGfs	p.A21fs	CBLN2_uc002lkv.2_Frame_Shift_Del_p.A21fs	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	21						integral to membrane					0		Esophageal squamous(42;0.131)				tcgcgcagcgccccccggcgc	0.502													5	10	---	---	---	---						.
UBXN6	80700	broad.mit.edu	37	19	4446878	4446879	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:4446878_4446879insA	uc002man.1	-	7	750_751	c.654_655insT	c.(652-657)TTTGAGfs	p.F218fs	UBXN6_uc010dty.1_Frame_Shift_Ins_p.F122fs|UBXN6_uc002mam.1_Frame_Shift_Ins_p.F165fs	NM_025241	NP_079517	Q9BZV1	UBXN6_HUMAN	UBX domain protein 6	218_219	PUB.					microtubule organizing center|nucleus	protein binding				0						CCAATGGCCTCAAAAAACTCGT	0.644													18	26	---	---	---	---						.
SAFB2	9667	broad.mit.edu	37	19	5590298	5590298	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:5590298delG	uc002mcd.2	-	18	2728	c.2516delC	c.(2515-2517)CCTfs	p.P839fs		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	839	Interacts with SAFB1.|Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CCTGGGGGGAGGGGGCAGCCC	0.687													4	5	---	---	---	---						.
TRIP10	9322	broad.mit.edu	37	19	6750379	6750380	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:6750379_6750380insC	uc002mfs.2	+	13	1538_1539	c.1472_1473insC	c.(1471-1473)GACfs	p.D491fs	TRIP10_uc010dux.1_Frame_Shift_Ins_p.D435fs|TRIP10_uc002mfr.2_Frame_Shift_Ins_p.D435fs|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Frame_Shift_Ins_p.D254fs	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	491	Interaction with CDC42.|Interaction with PDE6G (By similarity).|Interaction with DNM2 and WASL (By similarity).|Required for interaction with FASLG and localization to lysosomes.			ARPPDPPASAPPD -> KHPIICRLIHFSN (in Ref. 10; AAC41729).	actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						CGGCCTCCCGACCCCCCCGCTA	0.658													29	42	---	---	---	---						.
ZNF681	148213	broad.mit.edu	37	19	23927980	23927980	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:23927980delT	uc002nrk.3	-	4	514	c.372delA	c.(370-372)AAAfs	p.K124fs	ZNF681_uc002nrl.3_Frame_Shift_Del_p.K55fs|ZNF681_uc002nrj.3_Frame_Shift_Del_p.K55fs	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	124					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATAACCTCCTTTTTGCACTT	0.294													12	23	---	---	---	---						.
KCTD15	79047	broad.mit.edu	37	19	34292140	34292140	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:34292140delC	uc002nuy.3	+	4	403	c.135delC	c.(133-135)ATCfs	p.I45fs	KCTD15_uc002nuv.2_Frame_Shift_Del_p.I45fs|KCTD15_uc002nuw.3_Frame_Shift_Del_p.I45fs|KCTD15_uc010xrt.1_Frame_Shift_Del_p.I45fs|KCTD15_uc002nux.3_Frame_Shift_Del_p.I45fs	NM_001129994	NP_001123466	Q96SI1	KCD15_HUMAN	potassium channel tetramerisation domain	45						voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1	Esophageal squamous(110;0.162)					CCCAGGGCATCCCCCTGCCAG	0.612													36	52	---	---	---	---						.
MLL4	9757	broad.mit.edu	37	19	36214714	36214714	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:36214714delG	uc010eei.2	+	9	3140	c.3140delG	c.(3139-3141)CGGfs	p.R1047fs		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1047					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGCCCACGCCGGGGGGCGGGA	0.701													9	9	---	---	---	---						.
NCCRP1	342897	broad.mit.edu	37	19	39691081	39691081	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:39691081delC	uc002okq.1	+	5	663	c.644delC	c.(643-645)GCCfs	p.A215fs		NM_001001414	NP_001001414	Q6ZVX7	NCRP1_HUMAN	non-specific cytotoxic cell receptor protein 1	215	FBA.				protein catabolic process					ovary(1)	1						CACCACGTGGCCCCCCGAACT	0.672													52	115	---	---	---	---						.
FBL	2091	broad.mit.edu	37	19	40325193	40325193	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:40325193delG	uc002omn.2	-	9	1065	c.951delC	c.(949-951)CCCfs	p.P317fs	DYRK1B_uc002omi.2_5'Flank|DYRK1B_uc002omj.2_5'Flank|DYRK1B_uc002omk.2_5'Flank|DYRK1B_uc002oml.2_5'Flank|FBL_uc002omm.1_3'UTR	NM_001436	NP_001427	P22087	FBRL_HUMAN	fibrillarin	317					rRNA processing|tRNA processing	box C/D snoRNP complex|Cajal body	methyltransferase activity|protein binding|RNA binding			ovary(1)	1	all_cancers(60;5.79e-06)|all_lung(34;5.2e-08)|Lung NSC(34;6.14e-08)|Ovarian(47;0.06)	Renal(1328;0.000518)|Hepatocellular(1079;0.0893)	Epithelial(26;5.74e-25)|OV - Ovarian serous cystadenocarcinoma(5;3.13e-24)|all cancers(26;8.59e-23)	GBM - Glioblastoma multiforme(1328;0.000826)|STAD - Stomach adenocarcinoma(1328;0.138)		TCTTCACCTTGGGGGGTGGCC	0.507													51	105	---	---	---	---						.
HNRNPUL1	11100	broad.mit.edu	37	19	41808818	41808818	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:41808818delG	uc002oqb.3	+	12	2225	c.1936delG	c.(1936-1938)GGGfs	p.G646fs	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc002oqa.3_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc010ehm.2_Frame_Shift_Del_p.G646fs|HNRNPUL1_uc002oqc.3_Frame_Shift_Del_p.G532fs|HNRNPUL1_uc002oqe.3_Intron|HNRNPUL1_uc002oqd.3_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc010ehn.2_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc010eho.2_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc010xvy.1_Frame_Shift_Del_p.G546fs|HNRNPUL1_uc010ehp.2_Frame_Shift_Del_p.G502fs|HNRNPUL1_uc002oqf.3_Frame_Shift_Del_p.G170fs	NM_007040	NP_008971	Q9BUJ2	HNRL1_HUMAN	heterogeneous nuclear ribonucleoprotein U-like 1	646	Necessary for transcription repression.|Necessary for interaction with TP53.|Gly-rich.|1-4.|5 X 3 AA repeats of R-G-G.				nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	enzyme binding|RNA binding			central_nervous_system(1)|skin(1)	2						CCAGAACCGAGGGGGAGGCAG	0.642													28	51	---	---	---	---						.
CIC	23152	broad.mit.edu	37	19	42797376	42797376	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:42797376delC	uc002otf.1	+	15	3778	c.3738delC	c.(3736-3738)AGCfs	p.S1246fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1246	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CCCGGAGCAGCCCCCCACTGC	0.706			T	DUX4	soft tissue sarcoma								7	1	---	---	---	---						.
TRPM4	54795	broad.mit.edu	37	19	49671926	49671926	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:49671926delG	uc002pmw.2	+	6	801	c.729delG	c.(727-729)CTGfs	p.L243fs	TRPM4_uc010emu.2_Frame_Shift_Del_p.L243fs|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Frame_Shift_Del_p.L69fs|TRPM4_uc010emv.2_Frame_Shift_Del_p.L128fs|TRPM4_uc010yal.1_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	243	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		ACGGCTGCCTGGGGGGCGAGA	0.652													10	19	---	---	---	---						.
PIH1D1	55011	broad.mit.edu	37	19	49949891	49949891	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr19:49949891delG	uc002pns.2	-	8	1032	c.748delC	c.(748-750)CAGfs	p.Q250fs	uc002pnr.1_5'Flank	NM_017916	NP_060386	Q9NWS0	PIHD1_HUMAN	NOP17	250					box C/D snoRNP assembly	pre-snoRNP complex					0		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00152)|GBM - Glioblastoma multiforme(486;0.0244)		TACAGCTGCTGGGGGCCCCCC	0.622													48	77	---	---	---	---						.
TUBA3E	112714	broad.mit.edu	37	2	130949500	130949501	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:130949500_130949501delAG	uc002tqv.2	-	5	1357_1358	c.1256_1257delCT	c.(1255-1257)TCTfs	p.S419fs		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	419					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					CGCGGGCCTCAGAGAACTCTCC	0.589													84	122	---	---	---	---						.
RIF1	55183	broad.mit.edu	37	2	152318968	152318970	+	In_Frame_Del	DEL	GAT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:152318968_152318970delGAT	uc002txm.2	+	29	3481_3483	c.3351_3353delGAT	c.(3349-3354)AAGATG>AAG	p.M1119del	RIF1_uc002txl.2_In_Frame_Del_p.M1119del|RIF1_uc002txn.2_In_Frame_Del_p.M1119del|RIF1_uc002txo.2_In_Frame_Del_p.M1119del|RIF1_uc002txp.2_5'Flank	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1119					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		AGGATTCTAAGATGATGATTACG	0.286													18	41	---	---	---	---						.
TANK	10010	broad.mit.edu	37	2	162091980	162091980	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:162091980delG	uc002ubr.1	+	8	1387	c.1229delG	c.(1228-1230)AGGfs	p.R410fs	TANK_uc002ubs.2_Frame_Shift_Del_p.R410fs	NM_004180	NP_004171	Q92844	TANK_HUMAN	TRAF interacting protein TANK isoform a	410	C2H2-type.					cytosol	metal ion binding|protein binding			ovary(1)	1						ATTACATCCAGGGGGGATTTC	0.418													35	81	---	---	---	---						.
SCN9A	6335	broad.mit.edu	37	2	167141203	167141203	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:167141203delA	uc010fpl.2	-	12	2075	c.1734delT	c.(1732-1734)TTTfs	p.F578fs	uc002udp.2_Intron|SCN9A_uc002udr.1_Frame_Shift_Del_p.F449fs|SCN9A_uc002uds.1_Frame_Shift_Del_p.F449fs|SCN9A_uc002udt.1_Frame_Shift_Del_p.F449fs	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	578						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CATTGTCTCCAAAAATGCTGT	0.507													29	56	---	---	---	---						.
DHRS9	10170	broad.mit.edu	37	2	169948389	169948389	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:169948389delA	uc002uep.2	+	7	2166	c.662delA	c.(661-663)GAAfs	p.E221fs	DHRS9_uc002ueq.2_Frame_Shift_Del_p.E221fs|DHRS9_uc010zdc.1_Frame_Shift_Del_p.E281fs|DHRS9_uc010zdd.1_Frame_Shift_Del_p.E221fs|DHRS9_uc010zde.1_Frame_Shift_Del_p.E221fs	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	221					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						AAGGTAATTGAAAAAAAACTC	0.428													18	38	---	---	---	---						.
MYO3B	140469	broad.mit.edu	37	2	171240258	171240259	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:171240258_171240259insC	uc002ufy.2	+	12	1367_1368	c.1224_1225insC	c.(1222-1227)AATCCCfs	p.N408fs	MYO3B_uc002ufv.2_Frame_Shift_Ins_p.N395fs|MYO3B_uc010fqb.1_Frame_Shift_Ins_p.N395fs|MYO3B_uc002ufz.2_Frame_Shift_Ins_p.N408fs|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	408_409	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCGCCTCCAATCCCCCCCACAT	0.465													23	48	---	---	---	---						.
DNAJC10	54431	broad.mit.edu	37	2	183606066	183606066	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:183606066delA	uc002uow.1	+	13	1589	c.1174delA	c.(1174-1176)AAAfs	p.K392fs	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Frame_Shift_Del_p.K346fs|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	392					apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			AACTCTACTTAAAAATGATCA	0.279													8	9	---	---	---	---						.
SLC4A3	6508	broad.mit.edu	37	2	220492742	220492742	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:220492742delG	uc002vmp.3	+	2	297	c.28delG	c.(28-30)GGGfs	p.G10fs	SLC4A3_uc002vmn.2_Frame_Shift_Del_p.G10fs|SLC4A3_uc002vmo.3_Frame_Shift_Del_p.G10fs|SLC4A3_uc010fwm.2_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	10	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCGCCGCCCGGGGGCGCCTC	0.622													4	5	---	---	---	---						.
IRS1	3667	broad.mit.edu	37	2	227662352	227662352	+	Frame_Shift_Del	DEL	G	-	-	rs13306467		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr2:227662352delG	uc002voh.3	-	1	1155	c.1103delC	c.(1102-1104)CCGfs	p.P368fs		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	368	Ser-rich.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GTGGTTGAGCGGGGGGTGCAG	0.706											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	61	---	---	---	---						.
C20orf195	79025	broad.mit.edu	37	20	62187213	62187213	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr20:62187213delC	uc002yfj.2	+	2	289	c.197delC	c.(196-198)GCCfs	p.A66fs	C20orf195_uc002yfk.2_Frame_Shift_Del_p.A66fs	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	66											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CGCCACCACGCCCGCATGCAG	0.652													13	28	---	---	---	---						.
CBS	875	broad.mit.edu	37	21	44492285	44492285	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr21:44492285delG	uc002zcu.2	-	3	264	c.19delC	c.(19-21)CAGfs	p.Q7fs	CBS_uc002zct.2_Frame_Shift_Del_p.Q7fs|CBS_uc002zcw.3_Frame_Shift_Del_p.Q7fs|CBS_uc002zcv.2_Frame_Shift_Del_p.Q7fs	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	7					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	ACTTCTGCCTGGGGGGTCTCA	0.662													4	5	---	---	---	---						.
LOC96610	96610	broad.mit.edu	37	22	23243495	23243496	+	RNA	DEL	CA	-	-	rs67516365		TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:23243495_23243496delCA	uc011aim.1	+	369		c.15822_15823delCA			uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						CCTCACCCCCCACCACGGGAGA	0.569													10	16	---	---	---	---						.
GNAZ	2781	broad.mit.edu	37	22	23438488	23438488	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:23438488delG	uc002zwu.1	+	2	1143	c.606delG	c.(604-606)GTGfs	p.V202fs	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	202	GTP (By similarity).					endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		TGGTGGACGTGGGGGGGCAGA	0.577													56	109	---	---	---	---						.
LIF	3976	broad.mit.edu	37	22	30640813	30640815	+	In_Frame_Del	DEL	GTT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr22:30640813_30640815delGTT	uc003agz.2	-	2	239_241	c.127_129delAAC	c.(127-129)AACdel	p.N43del	LIF_uc011aks.1_Intron|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	43					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			GGTTCATGAGGTTGTTGTGACAT	0.562													22	42	---	---	---	---						.
LRRC3B	116135	broad.mit.edu	37	3	26751452	26751452	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:26751452delA	uc003cdp.2	+	2	878	c.289delA	c.(289-291)AAAfs	p.K97fs	LRRC3B_uc003cdq.2_Frame_Shift_Del_p.K97fs	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	97	LRR 2.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						CAACCTGTCCAAAAATGGCAT	0.423													19	30	---	---	---	---						.
CYP8B1	1582	broad.mit.edu	37	3	42916994	42916994	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:42916994delT	uc003cmh.2	-	1	640	c.315delA	c.(313-315)AAAfs	p.K105fs	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Frame_Shift_Del_p.K105fs	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	105					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TCAGCACCAGTTTTTTTGCAT	0.507													27	54	---	---	---	---						.
CACNA2D3	55799	broad.mit.edu	37	3	54596940	54596940	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:54596940delT	uc003dhf.2	+	6	706	c.658delT	c.(658-660)TTTfs	p.F220fs	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Frame_Shift_Del_p.F126fs|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_5'UTR	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	220	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGCAAAGGGCTTTTTTAGGCA	0.378													12	27	---	---	---	---						.
PAQR9	344838	broad.mit.edu	37	3	142682066	142682066	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:142682066delG	uc003evg.2	-	1	113	c.113delC	c.(112-114)CCAfs	p.P38fs	PAQR9_uc003evf.1_5'Flank	NM_198504	NP_940906	Q6ZVX9	PAQR9_HUMAN	progestin and adipoQ receptor family member IX	38	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GGCAGACGCTGGGGGGTCCCG	0.751													3	3	---	---	---	---						.
SR140	23350	broad.mit.edu	37	3	142773947	142773948	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr3:142773947_142773948insA	uc003evh.1	+	27	3036_3037	c.2937_2938insA	c.(2935-2940)AGCAAAfs	p.S979fs	SR140_uc003evi.1_Frame_Shift_Ins_p.S570fs|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Frame_Shift_Ins_p.S978fs	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	979_980	Arg/Ser-rich.				RNA processing	nucleus	nucleotide binding|RNA binding				0						GAGATGTTAGCAAAAAAGCCAA	0.391													7	15	---	---	---	---						.
CORIN	10699	broad.mit.edu	37	4	47647195	47647196	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:47647195_47647196insTC	uc003gxm.2	-	14	1952_1953	c.1859_1860insGA	c.(1858-1860)GATfs	p.D620fs	CORIN_uc011bzf.1_Frame_Shift_Ins_p.D481fs|CORIN_uc011bzg.1_Frame_Shift_Ins_p.D553fs|CORIN_uc011bzh.1_Frame_Shift_Ins_p.D583fs	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	620	Extracellular (Potential).|LDL-receptor class A 6.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						ATTCCCAAAGATCTCTCTCTTT	0.371													34	75	---	---	---	---						.
EPHA5	2044	broad.mit.edu	37	4	66509085	66509085	+	Frame_Shift_Del	DEL	T	-	-	rs33932471	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:66509085delT	uc003hcy.2	-	2	435	c.242delA	c.(241-243)AATfs	p.N81fs	EPHA5_uc003hcx.2_Frame_Shift_Del_p.N12fs|EPHA5_uc003hcz.2_Frame_Shift_Del_p.N81fs|EPHA5_uc011cah.1_Frame_Shift_Del_p.N81fs|EPHA5_uc011cai.1_Frame_Shift_Del_p.N81fs|EPHA5_uc003hda.2_Frame_Shift_Del_p.N81fs	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	81	Extracellular (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						ACTTACCCCATTTTTTGGAAA	0.338										TSP Lung(17;0.13)			22	40	---	---	---	---						.
CFI	3426	broad.mit.edu	37	4	110687927	110687927	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:110687927delT	uc003hzr.3	-	2	319	c.111delA	c.(109-111)AAAfs	p.K37fs	CFI_uc011cft.1_Frame_Shift_Del_p.K37fs|CFI_uc003hzs.3_Frame_Shift_Del_p.K37fs	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	37					complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		GGTGAGTATATTTTTTTGCTA	0.398													19	41	---	---	---	---						.
PRDM5	11107	broad.mit.edu	37	4	121738028	121738028	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr4:121738028delA	uc003idn.2	-	6	952	c.702delT	c.(700-702)TTTfs	p.F234fs	PRDM5_uc003ido.2_Intron|PRDM5_uc010ine.2_Intron|PRDM5_uc010inf.2_Intron	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	234	C2H2-type 3; atypical.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						CAGAGCACTGAAAACTTCGCG	0.383													59	131	---	---	---	---						.
FAM151B	167555	broad.mit.edu	37	5	79815642	79815642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:79815642delT	uc003kgv.1	+	4	591	c.448delT	c.(448-450)TTTfs	p.F150fs	FAM151B_uc010jal.1_RNA	NM_205548	NP_991111	Q6UXP7	F151B_HUMAN	hypothetical protein LOC167555	150											0		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;8.21e-47)|Epithelial(54;8.3e-42)|all cancers(79;1.97e-36)		TGCAAAACCATTTTTAGACAC	0.408													34	54	---	---	---	---						.
LYSMD3	116068	broad.mit.edu	37	5	89814637	89814638	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:89814637_89814638delTA	uc003kjr.2	-	3	1067_1068	c.919_920delTA	c.(919-921)TAGfs	p.*307fs	LYSMD3_uc010jaz.1_Frame_Shift_Del_p.H148fs|LYSMD3_uc003kjs.1_3'UTR	NM_198273	NP_938014	Q7Z3D4	LYSM3_HUMAN	LysM, putative peptidoglycan-binding, domain	307					cell wall macromolecule catabolic process	integral to membrane					0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-31)|Epithelial(54;5.22e-26)|all cancers(79;2.42e-22)		AGCTAATTGCTATGTTTCCTGT	0.366													32	62	---	---	---	---						.
RAPGEF6	51735	broad.mit.edu	37	5	130799880	130799880	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:130799880delA	uc003kvn.1	-	18	2540	c.2334delT	c.(2332-2334)TTTfs	p.F778fs	RAPGEF6_uc003kvp.1_Frame_Shift_Del_p.F828fs|RAPGEF6_uc003kvo.1_Frame_Shift_Del_p.F783fs|RAPGEF6_uc010jdi.1_Frame_Shift_Del_p.F778fs|RAPGEF6_uc010jdj.1_Frame_Shift_Del_p.F778fs|RAPGEF6_uc003kvq.2_Frame_Shift_Del_p.F495fs|RAPGEF6_uc003kvr.2_Frame_Shift_Del_p.F778fs|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Frame_Shift_Del_p.F778fs	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	778	Ras-associating.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		GAACAGCATGAAAAACTACTT	0.383													19	18	---	---	---	---						.
SLC22A5	6584	broad.mit.edu	37	5	131722731	131722731	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:131722731delC	uc003kww.3	+	5	1103	c.839delC	c.(838-840)TCCfs	p.S280fs	SLC22A5_uc003kwx.3_Frame_Shift_Del_p.S304fs|SLC22A5_uc010jdr.1_5'UTR	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	280	Cytoplasmic (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	ATCCCTGAGTCCCCCCGATGG	0.547											OREG0016767	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	78	158	---	---	---	---						.
RNF44	22838	broad.mit.edu	37	5	175957911	175957911	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr5:175957911delG	uc003mek.1	-	5	1102	c.577delC	c.(577-579)CAGfs	p.Q193fs	RNF44_uc011dfo.1_Frame_Shift_Del_p.Q101fs|RNF44_uc003mel.1_5'Flank	NM_014901	NP_055716	Q7L0R7	RNF44_HUMAN	ring finger protein 44	193	Pro-rich.						zinc ion binding				0	all_cancers(89;0.0029)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGGTGGGCTGGGGGGGTGGG	0.667													7	6	---	---	---	---						.
KIAA1009	22832	broad.mit.edu	37	6	84925098	84925098	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:84925098delA	uc010kbp.2	-	5	502	c.405delT	c.(403-405)TTTfs	p.F135fs	KIAA1009_uc003pkj.3_Frame_Shift_Del_p.F59fs|KIAA1009_uc003pkk.2_Frame_Shift_Del_p.F135fs	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	135					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		CAAGCCTGGCAAAAAATTGTT	0.368													7	14	---	---	---	---						.
PERP	64065	broad.mit.edu	37	6	138417555	138417557	+	In_Frame_Del	DEL	GAA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr6:138417555_138417557delGAA	uc003qht.2	-	2	472_474	c.289_291delTTC	c.(289-291)TTCdel	p.F97del		NM_022121	NP_071404	Q96FX8	PERP_HUMAN	PERP, TP53 apoptosis effector	97	Helical; (Potential).				apoptosis|cell adhesion	desmosome|Golgi apparatus|integral to membrane|nucleus					0	Breast(32;0.0799)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000878)|OV - Ovarian serous cystadenocarcinoma(155;0.000997)		CACAGAGGGCGAAGAAGGAGAGG	0.498													10	17	---	---	---	---						.
FKBP9	11328	broad.mit.edu	37	7	33014804	33014804	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:33014804delC	uc003tdh.2	+	3	559	c.378delC	c.(376-378)ATCfs	p.I126fs	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Frame_Shift_Del_p.I179fs|FKBP9_uc003tdg.2_Frame_Shift_Del_p.I126fs|FKBP9_uc010kwm.2_Frame_Shift_Del_p.I33fs	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	126	PPIase FKBP-type 1.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			CTGGTGTGATCCCCCCCAATT	0.443													26	48	---	---	---	---						.
NPC1L1	29881	broad.mit.edu	37	7	44576448	44576448	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:44576448delC	uc003tlb.2	-	3	1730	c.1674delG	c.(1672-1674)GGGfs	p.G558fs	NPC1L1_uc003tlc.2_Frame_Shift_Del_p.G558fs|NPC1L1_uc011kbw.1_Frame_Shift_Del_p.G558fs|NPC1L1_uc003tld.2_Frame_Shift_Del_p.G558fs	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	558	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TACCTTTGTACCCCCCAATGG	0.602													26	39	---	---	---	---						.
ABCA13	154664	broad.mit.edu	37	7	48654889	48654890	+	Frame_Shift_Ins	INS	-	GT	GT			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:48654889_48654890insGT	uc003toq.2	+	59	14778_14779	c.14753_14754insGT	c.(14752-14754)GAGfs	p.E4918fs	ABCA13_uc010kys.1_Frame_Shift_Ins_p.E1993fs|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Frame_Shift_Ins_p.E648fs	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4918	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCATGGAGGAGTGTGAGGCTC	0.436													5	3	---	---	---	---						.
PCLO	27445	broad.mit.edu	37	7	82390055	82390055	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:82390055delT	uc003uhx.2	-	24	15477	c.15188delA	c.(15187-15189)AAGfs	p.K5063fs		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4986	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTGATCACCTTTTTTTGGGT	0.313													24	27	---	---	---	---						.
DBF4	10926	broad.mit.edu	37	7	87507389	87507389	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr7:87507389delA	uc003ujf.1	+	2	572	c.68delA	c.(67-69)GAAfs	p.E23fs	SLC25A40_uc003uje.2_5'Flank|DBF4_uc003ujh.1_5'UTR|DBF4_uc003ujg.1_5'UTR|DBF4_uc011khf.1_5'UTR	NM_006716	NP_006707	Q9UBU7	DBF4A_HUMAN	activator of S phase kinase	23					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	enzyme activator activity|nucleic acid binding|protein binding|zinc ion binding			lung(2)	2	Esophageal squamous(14;0.00202)	Breast(660;0.0334)				GTCAAAAATGAAAAAAACAGA	0.299													75	99	---	---	---	---						.
PHF20L1	51105	broad.mit.edu	37	8	133837586	133837586	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:133837586delA	uc003ytt.2	+	14	2039	c.1714delA	c.(1714-1716)AAAfs	p.K572fs	PHF20L1_uc011lja.1_Frame_Shift_Del_p.K546fs|PHF20L1_uc003ytu.1_RNA	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	572	Lys-rich.						nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			gaagaagaagaaaaaaaagaa	0.194													4	8	---	---	---	---						.
EPPK1	83481	broad.mit.edu	37	8	144941378	144941378	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr8:144941378delC	uc003zaa.1	-	1	6057	c.6044delG	c.(6043-6045)GGTfs	p.G2015fs		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2015	Plectin 34.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTCGATGACACCCCCCGTGGC	0.622													19	43	---	---	---	---						.
ADAMTSL1	92949	broad.mit.edu	37	9	18504916	18504916	+	Frame_Shift_Del	DEL	T	-	-	rs2277160	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:18504916delT	uc003zne.3	+	2	280	c.153delT	c.(151-153)GGTfs	p.G51fs	ADAMTSL1_uc003znb.2_Frame_Shift_Del_p.G51fs|ADAMTSL1_uc003znc.3_Frame_Shift_Del_p.G51fs	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	51	TSP type-1 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		CCTGCGGGGGTGGGGCCTCCT	0.627													19	44	---	---	---	---						.
DENND4C	55667	broad.mit.edu	37	9	19346885	19346887	+	In_Frame_Del	DEL	CTT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:19346885_19346887delCTT	uc003znq.2	+	18	3296_3298	c.3263_3265delCTT	c.(3262-3267)ACTTCT>ACT	p.S1089del	DENND4C_uc011lnc.1_In_Frame_Del_p.S419del|DENND4C_uc011lnd.1_In_Frame_Del_p.S377del|DENND4C_uc003znr.2_In_Frame_Del_p.S377del|DENND4C_uc003zns.2_In_Frame_Del_p.S271del|DENND4C_uc003znt.2_In_Frame_Del_p.S271del	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	1089						integral to membrane				ovary(1)|skin(1)	2						GAACGTTCAACTTCTTTGTCAGC	0.468													20	44	---	---	---	---						.
VPS13A	23230	broad.mit.edu	37	9	79836219	79836219	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:79836219delA	uc004akr.2	+	13	1368	c.1108delA	c.(1108-1110)AAAfs	p.K370fs	VPS13A_uc004akp.3_Frame_Shift_Del_p.K370fs|VPS13A_uc004akq.3_Frame_Shift_Del_p.K370fs|VPS13A_uc004aks.2_Frame_Shift_Del_p.K370fs	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	370					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						AGAACTGTATAAAAAAAAGTT	0.353													31	66	---	---	---	---						.
NOL8	55035	broad.mit.edu	37	9	95064081	95064082	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:95064081_95064082insT	uc004arv.2	-	13	3263_3264	c.2926_2927insA	c.(2926-2928)AGGfs	p.R976fs	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Frame_Shift_Ins_p.R208fs|NOL8_uc011ltw.1_Frame_Shift_Ins_p.R908fs	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	976					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						AGCTTCCTCCCTTTTCTTTTTT	0.312													3	6	---	---	---	---						.
FANCC	2176	broad.mit.edu	37	9	98003011	98003011	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:98003011delT	uc004avh.2	-	4	527	c.265delA	c.(265-267)ATTfs	p.I89fs	FANCC_uc004avi.3_Frame_Shift_Del_p.I89fs|FANCC_uc010mrm.1_RNA|FANCC_uc011lul.1_RNA	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	89					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				CATATTAGAATTTTTTGGCTT	0.279			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				23	38	---	---	---	---						.
INVS	27130	broad.mit.edu	37	9	103054983	103054983	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:103054983delG	uc004bap.1	+	14	2656	c.2444delG	c.(2443-2445)CGGfs	p.R815fs	INVS_uc011lve.1_Frame_Shift_Del_p.R719fs|INVS_uc004bao.1_Intron|INVS_uc004baq.1_Intron|INVS_uc004bar.1_Frame_Shift_Del_p.R719fs|INVS_uc010mtb.1_Frame_Shift_Del_p.R489fs	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	815					negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				GGCAGTGCCCGGGGGGAGGCG	0.587													20	40	---	---	---	---						.
BAT2L1	84726	broad.mit.edu	37	9	134330506	134330508	+	In_Frame_Del	DEL	TGA	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:134330506_134330508delTGA	uc004can.3	+	9	1219_1221	c.1164_1166delTGA	c.(1162-1167)AGTGAT>AGT	p.D390del	BAT2L1_uc010mzj.1_5'UTR	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	390							protein binding				0						TGAAGTTCAGTGATGATGAAGAG	0.478													10	20	---	---	---	---						.
POMT1	10585	broad.mit.edu	37	9	134390826	134390827	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chr9:134390826_134390827insC	uc004cav.2	+	13	1457_1458	c.1255_1256insC	c.(1255-1257)GCCfs	p.A419fs	POMT1_uc004cax.2_Frame_Shift_Ins_p.A397fs|POMT1_uc011mcj.1_Frame_Shift_Ins_p.A175fs|POMT1_uc004cau.2_Frame_Shift_Ins_p.A397fs|POMT1_uc004caw.2_Frame_Shift_Ins_p.A343fs|POMT1_uc011mck.1_Frame_Shift_Ins_p.A280fs|POMT1_uc011mcl.1_Frame_Shift_Ins_p.A245fs|POMT1_uc011mcm.1_Frame_Shift_Ins_p.A367fs|POMT1_uc011mcn.1_Frame_Shift_Ins_p.A122fs	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	419	MIR 2.				multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		TGATGTTGCAGCCCCCCTGAGC	0.505													41	91	---	---	---	---						.
FAM47C	442444	broad.mit.edu	37	X	37028275	37028275	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:37028275delC	uc004ddl.1	+	1	1806	c.1792delC	c.(1792-1794)CCCfs	p.P598fs		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	598										ovary(3)	3						CCCCCCGGAGCCCCCCGAGAC	0.647													32	62	---	---	---	---						.
CCDC120	90060	broad.mit.edu	37	X	48925140	48925140	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:48925140delG	uc010nik.2	+	10	1892	c.1385delG	c.(1384-1386)TGGfs	p.W462fs	CCDC120_uc011mmq.1_Frame_Shift_Del_p.W450fs|CCDC120_uc004dmf.2_Frame_Shift_Del_p.W462fs|CCDC120_uc010nil.2_Frame_Shift_Del_p.W462fs|CCDC120_uc011mmr.1_Frame_Shift_Del_p.W462fs|CCDC120_uc011mms.1_Frame_Shift_Del_p.W450fs	NM_033626	NP_296375	Q96HB5	CC120_HUMAN	coiled-coil domain containing 120 isoform 3	462	Pro-rich.						protein binding			pancreas(1)	1						GGAACAGGCTGGGGGGAGCTG	0.697													15	24	---	---	---	---						.
NLGN3	54413	broad.mit.edu	37	X	70387541	70387541	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:70387541delG	uc004dzd.1	+	6	1794	c.1594delG	c.(1594-1596)GGGfs	p.G532fs	NLGN3_uc010nlb.1_Frame_Shift_Del_p.G492fs|NLGN3_uc004dzb.2_Frame_Shift_Del_p.G512fs|NLGN3_uc004dzc.2_Frame_Shift_Del_p.G395fs|NLGN3_uc011mps.1_Frame_Shift_Del_p.G492fs|NLGN3_uc004dze.2_Frame_Shift_Del_p.G330fs	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	532	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					CTATGTTTTTGGGGTTCCTAT	0.502													56	108	---	---	---	---						.
PLS3	5358	broad.mit.edu	37	X	114879381	114879382	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:114879381_114879382delCT	uc004eqd.2	+	11	1614_1615	c.1224_1225delCT	c.(1222-1227)AACTCTfs	p.N408fs	PLS3_uc010nqg.2_Frame_Shift_Del_p.N190fs|PLS3_uc011mtf.1_Frame_Shift_Del_p.N395fs|PLS3_uc004eqe.2_Frame_Shift_Del_p.N408fs|PLS3_uc011mtg.1_Frame_Shift_Del_p.N381fs|PLS3_uc011mth.1_Frame_Shift_Del_p.N363fs|PLS3_uc011mti.1_Frame_Shift_Del_p.N84fs|PLS3_uc011mtj.1_Frame_Shift_Del_p.N2fs|PLS3_uc011mtk.1_Frame_Shift_Del_p.N69fs|PLS3_uc011mtl.1_RNA	NM_005032	NP_005023	P13797	PLST_HUMAN	plastin 3	408_409	Actin-binding 2.|CH 3.					cytoplasm	actin binding|calcium ion binding			lung(1)|breast(1)	2						ACTGGATGAACTCTCTTGGTGT	0.356													50	84	---	---	---	---						.
CXorf56	63932	broad.mit.edu	37	X	118678354	118678354	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:118678354delT	uc004erk.1	-	4	431	c.385delA	c.(385-387)ACGfs	p.T129fs	CXorf56_uc004erj.1_Frame_Shift_Del_p.T80fs|CXorf56_uc011mtu.1_Frame_Shift_Del_p.T115fs	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	129							protein binding				0						TATATGTTCGTTTTCCCAAAG	0.428													43	68	---	---	---	---						.
FRMD7	90167	broad.mit.edu	37	X	131211976	131211978	+	In_Frame_Del	DEL	TCT	-	-			TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:131211976_131211978delTCT	uc004ewn.2	-	12	2245_2247	c.2067_2069delAGA	c.(2065-2070)GAAGAT>GAT	p.E689del	FRMD7_uc011muy.1_In_Frame_Del_p.E674del	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	689					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					AGCATCTTCATCTTCTTCATCTA	0.384													30	63	---	---	---	---						.
SPANXC	64663	broad.mit.edu	37	X	140335820	140335820	+	Frame_Shift_Del	DEL	T	-	-	rs57835830	byFrequency	TCGA-HU-A4H3-01A-21D-A25D-08	TCGA-HU-A4H3-10A-01D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4217ee3-8720-46c6-86c4-981ce6377fa9	1f68952d-2c49-4562-815b-bab0dc54415a	g.chrX:140335820delT	uc004fbk.2	-	2	180	c.124delA	c.(124-126)ATGfs	p.M42fs	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	42	Nuclear localization signal (Potential).					cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					GATGTTTTCATTTTTTTAGGA	0.498													16	22	---	---	---	---						.
