Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SLC25A33	84275	genome.wustl.edu	37	1	9640108	9640108	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032315.2	+1	validated	p.S193	0.000	81	0%	61	36.1%	-	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TARDBP	23435	genome.wustl.edu	37	1	11082185	11082185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007375.3	+1	reviewed	p.A240V	1.000	61	0%	85	42.4%	-	-	possibly_damaging(0.659)	deleterious(0.03)	deleterious(0.597)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PRDM2	7799	genome.wustl.edu	37	1	14107099	14107099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012231.4	+1	reviewed	p.T937A	0.000	390	0%	334	43.1%	-	-	unknown(0)	tolerated(0.15)	-	NULL
HSPG2	3339	genome.wustl.edu	37	1	22199913	22199913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000374695	-1	known	p.A1250T	1.000	51	0%	65	35.4%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
SRRM1	10250	genome.wustl.edu	37	1	24979442	24979442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005839.3	+1	validated	p.R320Q	1.000	81	0%	76	55.3%	-	-	unknown(0)	tolerated(0.35)	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106180	27106180	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006015.4	+1	reviewed	p.E1931*	1.000	341	0%	366	43.7%	-	-	-	-	-	NULL
C1orf172	126695	genome.wustl.edu	37	1	27278751	27278751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152365.2	-1	validated	p.R41C	0.593	20	0%	12	50%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33959109	33959109	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_145238.3	+1	validated	p.R589	0.025	294	0%	203	36%	-	-	-	-	-	NULL
GJB5	2709	genome.wustl.edu	37	1	35223627	35223627	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005268.2	+1	provisional	p.H232	0.000	91	0%	55	34.5%	-	-	-	-	-	NULL
ZC3H12A	80149	genome.wustl.edu	37	1	37941298	37941298	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_025079.2	+1	validated	p.S67	0.026	41	0%	22	59.1%	-	-	-	-	-	NULL
C1orf173	127254	genome.wustl.edu	37	1	75072527	75072527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001002912.4	-1	validated	p.K416R	0.471	362	0%	329	44.4%	-	-	benign(0.004)	tolerated(0.55)	neutral(0.007)	NULL
CLCA2	9635	genome.wustl.edu	37	1	86890041	86890041	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006536.5	+1	reviewed	p.D37	0.994	110	0%	95	40%	-	-	-	-	-	HMMPfam_CLCA_N
HFM1	164045	genome.wustl.edu	37	1	91781407	91781407	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000430465	-1	known	p.T247M	1.000	116	0%	87	47.1%	-	-	-	-	-	NULL
BCAR3	8412	genome.wustl.edu	37	1	94048388	94048388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003567.2	-1	reviewed	p.A386T	0.000	74	0%	46	30.4%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_Ras GEF
AMY2B	280	genome.wustl.edu	37	1	104122082	104122082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020978.3	+1	reviewed	p.E499V	1.000	835	0%	859	22.2%	-	-	benign(0.037)	tolerated(0.14)	neutral(0.252)	HMMPfam_Alpha-amylase_C,HMMSmart_SM00632,superfamily_Glycosyl hydrolase domain
KCND3	3752	genome.wustl.edu	37	1	112525298	112525298	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004980.3	-1	reviewed	p.I17	0.600	37	0%	13	53.8%	-	-	-	-	-	NULL
NRAS	4893	genome.wustl.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	byCluster	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002524.3	-1	reviewed	p.Q61R	1.000	322	0%	226	41.2%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYCP1	6847	genome.wustl.edu	37	1	115456608	115456609	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003176.2	+1	validated	p.E555fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SCP-1
TCHH	7062	genome.wustl.edu	37	1	152082585	152082585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007113.2	-1	provisional	p.E1036D	0.001	489	0%	485	38.1%	-	-	unknown(0)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152275812	152275812	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002016.1	-1	reviewed	p.S3850	0.000	472	0%	371	43.4%	-	-	-	-	-	HMMPfam_Filaggrin
LOC100289267	100289267	genome.wustl.edu	37	1	152770637	152770637	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002342136.1	-1	model	p.G38fs	0.000	-	-	-	-	-	-	-	-	-	NULL
FAM189B	10712	genome.wustl.edu	37	1	155220493	155220493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006589.2	-1	validated	p.V362I	1.000	17	0%	33	39.4%	-	-	benign(0.029)	deleterious(0.02)	neutral(0.385)	NULL
LMNA	4000	genome.wustl.edu	37	1	156105054	156105054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_170707.2	+1	reviewed	p.R296H	1.000	23	0%	15	46.7%	-	-	benign(0.083)	tolerated(0.06)	neutral(0.329)	HMMPfam_Filament
OR6N2	81442	genome.wustl.edu	37	1	158746569	158746569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001005278.1	-1	provisional	p.N286S	1.000	475	0%	483	47.6%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
DCAF8	50717	genome.wustl.edu	37	1	160209761	160209761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015726.3	-1	reviewed	p.P150H	1.000	127	0.8%	97	42.3%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	superfamily_WD40 repeat-like
ARHGAP30	257106	genome.wustl.edu	37	1	161018208	161018208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001025598.1	-1	validated	p.A868V	0.004	217	0%	176	46%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
NOS1AP	9722	genome.wustl.edu	37	1	162124246	162124246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014697.2	+1	reviewed	p.A53T	1.000	58	0%	45	26.7%	-	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
TMCO1	54499	genome.wustl.edu	37	1	165721364	165721364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_019026.3	-1	validated	p.A100T	1.000	76	0%	101	37.6%	-	-	benign(0.086)	tolerated(0.12)	neutral(0.267)	HMMPfam_DUF841
FAM5B	57795	genome.wustl.edu	37	1	177226475	177226475	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021165.2	+1	provisional	p.T208	0.001	68	0%	63	38.1%	-	-	-	-	-	HMMSmart_SM00457
CACNA1E	777	genome.wustl.edu	37	1	181745318	181745318	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000721.2	+1	reviewed	p.L1741	0.941	173	0%	130	46.2%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
EDEM3	80267	genome.wustl.edu	37	1	184706771	184706771	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_025191.3	-1	validated	p.R93	0.998	104	0%	86	40.7%	-	-	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
SLC45A3	85414	genome.wustl.edu	37	1	205628523	205628523	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_033102.2	-1	validated	p.L501	1.000	40	0%	30	50%	-	-	-	-	-	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213414485	213414485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012424.3	+1	validated	p.A556T	0.002	222	0%	161	46%	-	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
PROX1	5629	genome.wustl.edu	37	1	214171523	214171523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002763.3	+1	provisional	p.G549W	1.000	298	0%	258	45.7%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Prox1
OBSCN	84033	genome.wustl.edu	37	1	228431101	228431101	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001098623.1	+1	reviewed	p.A1049	0.135	54	0%	95	38.9%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
WDR64	128025	genome.wustl.edu	37	1	241875108	241875108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_144625.4	+1	validated	p.V37I	1.000	80	0%	52	57.7%	-	-	probably_damaging(0.973)	tolerated(0.2)	neutral(0.464)	HMMSmart_SM00320,superfamily_WD40 repeat-like
KIF26B	55083	genome.wustl.edu	37	1	245862256	245862256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018012.3	+1	provisional	p.R2032H	1.000	63	0%	54	51.9%	-	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	NULL
PGBD2	267002	genome.wustl.edu	37	1	249211112	249211112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_170725.2	+1	validated	p.R110H	0.000	140	0%	125	35.2%	-	-	benign(0.016)	tolerated(0.41)	neutral(0.015)	NULL
WDR35	57539	genome.wustl.edu	37	2	20169285	20169285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001006657.1	-1	reviewed	p.V322I	1.000	105	0%	107	49.5%	-	-	possibly_damaging(0.839)	tolerated(0.17)	neutral(0.380)	superfamily_WD40 repeat-like
GTF3C2	2976	genome.wustl.edu	37	2	27549588	27549588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001035521.1	-1	validated	p.R897Q	1.000	56	0%	52	48.1%	-	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
GCKR	2646	genome.wustl.edu	37	2	27722028	27722028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001486.3	+1	reviewed	p.E150K	0.988	71	0%	60	48.3%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	superfamily_SIS domain
SRBD1	55133	genome.wustl.edu	37	2	45789831	45789831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018079.4	-1	validated	p.G457E	1.000	171	0%	166	44.6%	-	-	possibly_damaging(0.452)	tolerated(0.45)	neutral(0.160)	NULL
ATP6V1E2	90423	genome.wustl.edu	37	2	46739478	46739478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080653.3	-1	validated	p.L125F	0.959	112	0%	113	46.9%	-	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_vATP-synt_E
TTC7A	57217	genome.wustl.edu	37	2	47233805	47233805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020458.2	+1	validated	p.A410V	1.000	40	0%	14	35.7%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_TPR-like
PSME4	23198	genome.wustl.edu	37	2	54102789	54102789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014614.2	-1	validated	p.P1640H	1.000	101	0%	96	32.3%	-	-	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	superfamily_ARM repeat
FAM161A	84140	genome.wustl.edu	37	2	62069294	62069294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032180.2	-1	validated	p.V129M	0.013	186	0%	115	39.1%	-	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
GMCL1	64395	genome.wustl.edu	37	2	70096929	70096929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_178439.3	+1	provisional	p.R433C	1.000	122	0%	112	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOK1	1796	genome.wustl.edu	37	2	74783473	74783473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000340004	+1	known	p.R165G	0.004	92	0%	65	43.1%	-	-	unknown(0)	deleterious(0)	-	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74907085	74907085	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004263.3	+1	provisional	p.R688*	0.963	82	0%	71	47.9%	-	-	-	-	-	NULL
TGOLN2	10618	genome.wustl.edu	37	2	85554364	85554364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006464.2	-1	validated	p.S164N	0.000	502	0%	481	45.9%	-	-	probably_damaging(0.955)	tolerated(0.46)	neutral(0.411)	NULL
RETSAT	54884	genome.wustl.edu	37	2	85576578	85576578	+	Missense_Mutation	SNP	C	C	T	rs143604495	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017750.3	-1	validated	p.R309Q	1.000	40	0%	29	44.8%	-	-	possibly_damaging(0.501)	tolerated(0.11)	neutral(0.439)	superfamily_FAD/NAD(P)-binding domain
USP39	10713	genome.wustl.edu	37	2	85857947	85857947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006590.2	+1	validated	p.R276H	1.000	178	0%	157	43.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
REEP1	65055	genome.wustl.edu	37	2	86479080	86479080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022912.2	-1	reviewed	p.K139N	1.000	360	0%	234	10.3%	-	-	possibly_damaging(0.929)	tolerated(0.05)	deleterious(0.722)	NULL
ADRA2B	151	genome.wustl.edu	37	2	96781457	96781457	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000409345	-1	known	p.S144	0.918	20	0%	17	70.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
IL1F10	84639	genome.wustl.edu	37	2	113832800	113832800	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032556.4	+1	reviewed	p.S106	0.004	301	0%	243	50.6%	-	-	-	-	-	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
STEAP3	55240	genome.wustl.edu	37	2	120020768	120020768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_182915.2	+1	validated	p.V451I	0.002	92	0%	61	27.9%	-	-	benign(0.039)	tolerated(0.73)	neutral(0.004)	NULL
ZNF806	646915	genome.wustl.edu	37	2	133066888	133066888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_001724242.2	+1	model	p.K3E	0.027	406	0%	338	27.5%	-	-	-	-	-	superfamily_Krueppel-associated_box
STAM2	10254	genome.wustl.edu	37	2	152977232	152977232	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005843.4	-1	reviewed	p.T478	0.433	179	0%	214	14%	-	-	-	-	-	NULL
NR4A2	4929	genome.wustl.edu	37	2	157184955	157184955	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006186.3	-1	reviewed	p.R319*	1.000	80	0%	69	34.8%	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LRP2	4036	genome.wustl.edu	37	2	170062574	170062574	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004525.2	-1	reviewed	p.R2505	0.003	308	0%	246	42.7%	-	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
ITGA6	3655	genome.wustl.edu	37	2	173349900	173349900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001079818.1	+1	reviewed	p.I588V	1.000	140	0%	100	46%	-	-	probably_damaging(0.974)	tolerated(0.14)	deleterious(0.665)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
NFE2L2	4780	genome.wustl.edu	37	2	178097235	178097235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006164.3	-1	validated	p.N160S	0.024	106	0%	111	41.4%	-	-	benign(0)	tolerated(1)	-	NULL
AGPS	8540	genome.wustl.edu	37	2	178378557	178378557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003659.3	+1	reviewed	p.L540I	1.000	158	0%	126	43.7%	-	-	benign(0.341)	tolerated(0.07)	neutral(0.426)	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
TTN	7273	genome.wustl.edu	37	2	179553408	179553408	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000356127	-1	known	p.H9487	0.490	117	0%	80	26.3%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179568891	179568891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000356127	-1	known	p.A8825V	1.000	243	0.4%	278	41.4%	-	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
DNAH7	56171	genome.wustl.edu	37	2	196801392	196801392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018897.2	-1	validated	p.F1068S	1.000	183	0%	160	46.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
ZDBF2	57683	genome.wustl.edu	37	2	207176130	207176130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020923.1	+1	validated	p.R2293Q	0.000	70	0%	56	44.6%	-	-	benign(0)	-	-	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209210845	209210845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015040.3	+1	reviewed	p.R1728H	0.906	178	0%	171	45.6%	-	-	possibly_damaging(0.783)	tolerated(0.12)	deleterious(0.553)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215851404	215851404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_173076.2	-1	reviewed	p.L1342R	1.000	146	0%	96	44.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ATIC	471	genome.wustl.edu	37	2	216190747	216190747	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004044.6	+1	reviewed	p.H139	0.076	182	0%	175	40%	-	-	-	-	-	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_SSF52335
CNPPD1	27013	genome.wustl.edu	37	2	220037672	220037672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015680.4	-1	validated	p.P290L	0.000	60	1.7%	35	80%	-	-	benign(0.304)	deleterious(0)	deleterious(0.539)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230910406	230910406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000457406	-1	known	p.C479Y	0.000	139	0%	82	42.7%	-	-	benign(0.003)	-	-	superfamily_MFS general substrate transporter
UGT1A4	54657	genome.wustl.edu	37	2	234676536	234676536	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007120.2	+1	reviewed	p.A347	0.000	290	0%	239	45.2%	-	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
KIF1A	547	genome.wustl.edu	37	2	241712601	241712601	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000428768	-1	known	p.R178*	0.075	27	0%	20	60%	-	-	-	-	-	NULL
PASK	23178	genome.wustl.edu	37	2	242065780	242065780	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015148.2	-1	validated	p.T850	0.000	151	0%	122	45.1%	-	-	-	-	-	NULL
RPUSD3	285367	genome.wustl.edu	37	3	9883732	9883732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000397234	-1	known	p.A93T	0.943	273	0%	261	41%	-	-	benign(0.164)	-	-	HMMPfam_PseudoU_synth_2
IQSEC1	9922	genome.wustl.edu	37	3	12978086	12978086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014869.4	-1	validated	p.R158C	1.000	19	0%	15	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3orf19	51244	genome.wustl.edu	37	3	14703076	14703078	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016474.4	+1	validated	p.K117in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
UBE2E1	7324	genome.wustl.edu	37	3	23929190	23929190	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003341.3	+1	reviewed	p.K112	1.000	126	0%	132	40.9%	-	-	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
CMTM8	152189	genome.wustl.edu	37	3	32409410	32409410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_178868.3	+1	reviewed	p.A123V	0.775	88	0%	56	42.9%	-	-	probably_damaging(0.998)	tolerated(0.34)	deleterious(0.497)	HMMPfam_MARVEL
DLEC1	9940	genome.wustl.edu	37	3	38151774	38151774	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007337.2	+1	reviewed	e23+2	1.000	116	0%	97	49.5%	-	-	-	-	-	-
PRSS50	29122	genome.wustl.edu	37	3	46755831	46755831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_013270.4	-1	validated	p.K211E	0.915	26	0%	16	50%	-	-	possibly_damaging(0.888)	tolerated(0.78)	neutral(0.348)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
IP6K2	51447	genome.wustl.edu	37	3	48725889	48725889	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001005909.1	-1	reviewed	p.A366	1.000	94	0%	71	39.4%	-	-	-	-	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
LAMB2	3913	genome.wustl.edu	37	3	49162869	49162869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002292.3	-1	reviewed	p.T846N	0.141	37	0%	21	57.1%	-	-	benign(0.013)	tolerated(0.58)	neutral(0.005)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
MST1R	4486	genome.wustl.edu	37	3	49933522	49933522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002447.2	-1	validated	p.V890M	0.996	60	0%	60	50%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51664852	51664852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015106.2	+1	validated	p.A244T	0.997	145	0%	109	41.3%	-	-	benign(0.424)	tolerated(0.33)	neutral(0.162)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNA1D	776	genome.wustl.edu	37	3	53757968	53757968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000720.2	+1	validated	p.T701M	1.000	110	0%	89	50.6%	-	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Ion_trans,superfamily_SSF81324
ACOX2	8309	genome.wustl.edu	37	3	58503001	58503001	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003500.3	-1	reviewed	p.D594	0.994	83	0%	73	38.4%	-	-	-	-	-	HMMPfam_ACOX,superfamily_AcylCoADH_C_like
SHQ1	55164	genome.wustl.edu	37	3	72799476	72799476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018130.2	-1	validated	p.N565D	0.000	174	0%	176	26.7%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
KIAA1524	57650	genome.wustl.edu	37	3	108276167	108276167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020890.2	-1	validated	p.A703V	0.999	103	0%	87	42.5%	-	-	benign(0.004)	tolerated(0.59)	neutral(0.004)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111632173	111632173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001134438.1	+1	validated	p.Q448R	1.000	689	0%	533	20.8%	-	-	benign(0.323)	deleterious(0.02)	deleterious(0.484)	NULL
CASR	846	genome.wustl.edu	37	3	122003529	122003529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000388.3	+1	reviewed	p.P910T	0.999	77	0%	48	39.6%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PARP14	54625	genome.wustl.edu	37	3	122446809	122446809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017554.2	+1	validated	p.N1698D	1.000	110	0%	113	20.4%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_PARP,superfamily_ADP-ribosylation
ALDH1L1	10840	genome.wustl.edu	37	3	125856723	125856723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012190.2	-1	reviewed	p.D386G	1.000	37	0%	25	36%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH
C3orf56	285311	genome.wustl.edu	37	3	126915977	126915977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000398112	+1	known	p.S150Y	0.000	153	0%	98	36.7%	-	-	possibly_damaging(0.449)	-	-	NULL
ATP2C1	27032	genome.wustl.edu	37	3	130649288	130649288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001001486.1	+1	reviewed	p.G12D	0.998	94	0%	74	41.9%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134920468	134920468	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004441.4	+1	reviewed	p.S761	0.001	434	0%	435	40.5%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ATR	545	genome.wustl.edu	37	3	142185358	142185358	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000513291	-1	known	p.H82Y	1.000	157	0%	151	25.8%	-	-	-	-	-	NULL
GPR87	53836	genome.wustl.edu	37	3	151012462	151012462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_023915.3	-1	validated	p.D191G	0.998	332	0%	274	24.5%	-	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DCUN1D1	54165	genome.wustl.edu	37	3	182679117	182679117	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020640.2	-1	validated	p.A139	1.000	697	0%	647	43.6%	-	-	-	-	-	HMMPfam_DUF298
ECE2	9718	genome.wustl.edu	37	3	183976237	183976237	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032331.3	+1	validated	p.G214	0.602	49	0%	43	25.6%	-	-	-	-	-	superfamily_SSF53335
ECE2	9718	genome.wustl.edu	37	3	184001759	184001759	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014693.3	+1	validated	p.Q453*	1.000	17	0%	23	47.8%	-	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
TP63	8626	genome.wustl.edu	37	3	189607202	189607202	+	Silent	SNP	C	C	G	rs61752082		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003722.4	+1	reviewed	p.P527	1.000	143	0%	153	54.9%	-	-	-	-	-	NULL
NOP14	8602	genome.wustl.edu	37	4	2956223	2956223	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003703.1	-1	validated	p.G180	0.503	70	0%	70	38.6%	-	-	-	-	-	HMMPfam_Nop14
GRK4	2868	genome.wustl.edu	37	4	3015480	3015483	+	Frame_Shift_Del	DEL	AATA	AATA	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AATA	AATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_182982.2	+1	reviewed	p.I223fs	0.988:1.000:1.000:0.979	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
RAB28	9364	genome.wustl.edu	37	4	13462369	13462369	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000511649	-1	known	p.R38*	0.821	177	0%	248	10.9%	-	-	-	-	-	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
APBB2	323	genome.wustl.edu	37	4	40827978	40827978	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000513493	-1	known	p.Q118*	1.000	123	0%	102	28.4%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_PH domain-like
LIMCH1	22998	genome.wustl.edu	37	4	41648508	41648509	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014988.2	+1	validated	p.E425fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48551490	48551490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015030.1	-1	validated	p.R1595M	1.000	84	0%	78	39.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79432436	79432436	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000512123	+1	known	p.Q1492*	0.998	107	0%	93	40.9%	-	-	-	-	-	NULL
NAA11	84779	genome.wustl.edu	37	4	80246916	80246916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032693.2	-1	validated	p.P39L	1.000	180	0%	170	44.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acyl_CoA_acyltransferase
ATOH1	474	genome.wustl.edu	37	4	94750676	94750676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005172.1	+1	reviewed	p.T200I	1.000	69	0%	54	29.6%	-	-	possibly_damaging(0.793)	deleterious(0.02)	deleterious(0.681)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
BDH2	56898	genome.wustl.edu	37	4	104003299	104003299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020139.3	-1	validated	p.T208M	0.949	87	0%	66	45.5%	-	-	benign(0.162)	tolerated(1)	neutral(0.015)	superfamily_NAD(P)-binding Rossmann-fold domains
TRPC3	7222	genome.wustl.edu	37	4	122854043	122854043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001130698.1	-1	validated	p.N124D	1.000	95	0%	78	10.3%	-	-	possibly_damaging(0.45)	tolerated(1)	neutral(0.147)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126238081	126238081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024582.4	+1	validated	p.R172H	0.999	53	0%	29	37.9%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ABCE1	6059	genome.wustl.edu	37	4	146044712	146044712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001040876.1	+1	reviewed	p.V534I	1.000	133	0%	91	34.1%	-	-	possibly_damaging(0.693)	deleterious(0.03)	deleterious(0.613)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GUCY1B3	2983	genome.wustl.edu	37	4	156725805	156725805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000857.2	+1	validated	p.R539*	1.000	191	0%	146	39%	-	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
NAF1	92345	genome.wustl.edu	37	4	164050428	164050428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_138386.2	-1	validated	p.R369H	0.005	105	0%	121	46.3%	-	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	NULL
MFAP3L	9848	genome.wustl.edu	37	4	170913337	170913337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021647.6	-1	validated	p.R141H	1.000	164	0%	140	44.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AGA	175	genome.wustl.edu	37	4	178358603	178358603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000027.3	-1	reviewed	p.P193H	0.000	55	0%	48	43.8%	-	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
FAT1	2195	genome.wustl.edu	37	4	187539894	187539894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005245.3	-1	reviewed	p.V2616I	0.037	129	0%	82	32.9%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC127	133957	genome.wustl.edu	37	5	205611	205611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_145265.2	-1	provisional	p.S195C	0.027	67	0%	53	35.8%	-	-	benign(0.163)	deleterious(0.05)	neutral(0.360)	NULL
CCDC127	133957	genome.wustl.edu	37	5	205612	205612	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_145265.2	-1	provisional	p.S195T	0.020	65	0%	48	39.6%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
CDH18	1016	genome.wustl.edu	37	5	19483468	19483468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000506372	-1	known	p.R573Q	0.915	102	0%	56	19.6%	-	-	possibly_damaging(0.875)	tolerated(0.4)	neutral(0.356)	NULL
DHX29	54505	genome.wustl.edu	37	5	54558480	54558480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_019030.2	-1	validated	p.G1269V	1.000	239	0%	213	26.3%	-	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMPfam_DUF1605
ZCCHC9	84240	genome.wustl.edu	37	5	80608438	80608438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001131035.1	+1	validated	p.P258L	0.001	171	0%	133	42.1%	-	-	probably_damaging(0.976)	tolerated(0.47)	neutral(0.429)	NULL
RFESD	317671	genome.wustl.edu	37	5	94989815	94989816	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001131065.1	+1	validated	p.V74fs	0.911:0.908	-	-	-	-	-	-	-	-	-	HMMPfam_Rieske,superfamily_ISP domain
SLCO6A1	133482	genome.wustl.edu	37	5	101755537	101755537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_173488.3	-1	validated	p.Y489H	0.577	187	0%	182	48.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
MAN2A1	4124	genome.wustl.edu	37	5	109049313	109049313	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002372.2	+1	reviewed	p.V76	1.000	337	0%	314	42.4%	-	-	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109181688	109181688	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002372.2	+1	reviewed	p.G941	0.167	334	0%	350	38%	-	-	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
WDR36	134430	genome.wustl.edu	37	5	110446514	110446514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_139281.2	+1	reviewed	p.A546V	1.000	99	0%	48	43.8%	-	-	benign(0.329)	tolerated(0.32)	neutral(0.127)	HMMSmart_WD40,superfamily_WD40_like
APC	324	genome.wustl.edu	37	5	112176891	112176892	+	In_Frame_Ins	INS	-	-	TGA	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000038.4	+1	reviewed	p.1871in_frame_insD	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115783394	115783394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020796.3	-1	validated	p.V670I	1.000	100	0%	61	14.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZCCHC10	54819	genome.wustl.edu	37	5	132334285	132334287	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017665.1	-1	provisional	p.K170in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DDX46	9879	genome.wustl.edu	37	5	134131781	134131781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014829.2	+1	reviewed	p.A632V	1.000	157	0%	165	43.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF52540
H2AFY	9555	genome.wustl.edu	37	5	134686556	134686556	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_138609.2	-1	reviewed	p.V212	1.000	62	0%	45	42.2%	-	-	-	-	-	HMMSmart_A1pp,superfamily_SSF52949
DNAJC18	202052	genome.wustl.edu	37	5	138755844	138755845	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152686.2	-1	provisional	p.D283fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1977
SRA1	10011	genome.wustl.edu	37	5	139930728	139930728	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001035235.2	-1	reviewed	p.R139	1.000	184	0%	120	48.3%	-	-	-	-	-	HMMPfam_SRA1
PCDHA2	56146	genome.wustl.edu	37	5	140174689	140174689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018905.2	+1	reviewed	p.R47H	0.972	103	0%	76	23.7%	-	-	possibly_damaging(0.907)	deleterious(0.01)	deleterious(0.766)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA2	56146	genome.wustl.edu	37	5	140176058	140176058	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018905.2	+1	reviewed	p.A503	0.047	60	0%	32	62.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ENSG00000249608	0	genome.wustl.edu	37	5	140180596	140180596	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000512753	-1	known	NULL	1.000	20	0%	16	31.2%	-	-	-	-	-	-
PCDHB14	56122	genome.wustl.edu	37	5	140604308	140604309	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018934.2	+1	reviewed	p.S413fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGB1	56104	genome.wustl.edu	37	5	140730606	140730606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018922.2	+1	reviewed	p.R260L	0.000	179	0%	199	45.7%	-	-	benign(0.053)	tolerated(0.31)	neutral(0.030)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140798773	140798773	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018927.2	+1	reviewed	p.A449	0.000	99	0%	89	42.7%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
SPRY4	81848	genome.wustl.edu	37	5	141694467	141694467	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030964.3	-1	validated	p.G92	0.005	28	0%	27	48.1%	-	-	-	-	-	NULL
SYNPO	11346	genome.wustl.edu	37	5	150029506	150029506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007286.5	+1	validated	p.P557S	0.996	102	0%	79	51.9%	-	-	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	NULL
LARP1	23367	genome.wustl.edu	37	5	154092583	154092583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015315.3	+1	validated	p.P33L	0.991	66	0%	55	38.2%	-	-	unknown(0)	-	-	NULL
GPRIN1	114787	genome.wustl.edu	37	5	176026677	176026677	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052899.2	-1	validated	p.S53	0.972	39	0%	15	40%	-	-	-	-	-	NULL
HK3	3101	genome.wustl.edu	37	5	176316551	176316551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002115.2	-1	reviewed	p.A249T	0.464	52	0%	42	26.2%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Hexokinase_2,superfamily_SSF53067
RMND5B	64777	genome.wustl.edu	37	5	177569912	177569912	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022762.3	+1	provisional	p.Q115	1.000	82	0%	82	34.1%	-	-	-	-	-	NULL
ZNF454	285676	genome.wustl.edu	37	5	178391816	178391816	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_182594.2	+1	validated	p.L137	0.099	121	0%	98	42.9%	-	-	-	-	-	NULL
BTNL8	79908	genome.wustl.edu	37	5	180338412	180338412	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001040462.2	+1	validated	p.S157	0.000	398	0%	411	47.4%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
C6orf195	154386	genome.wustl.edu	37	6	2623874	2623874	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152554.2	-1	validated	p.P61	0.001	101	0%	71	42.3%	-	-	-	-	-	NULL
TXNDC5	81567	genome.wustl.edu	37	6	7891946	7891946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030810.2	-1	reviewed	p.A214T	1.000	43	0%	30	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1
CDKAL1	54901	genome.wustl.edu	37	6	20955656	20955656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017774.3	+1	reviewed	p.V250A	1.000	235	0%	170	44.7%	-	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
ZNF391	346157	genome.wustl.edu	37	6	27368241	27368241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001076781.1	+1	validated	p.P31H	0.000	371	0%	315	42.5%	-	-	benign(0.282)	deleterious(0.01)	deleterious(0.492)	NULL
TRIM26	7726	genome.wustl.edu	37	6	30154271	30154271	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003449.3	-1	validated	p.C334	0.003	135	0%	88	37.5%	-	-	-	-	-	HMMSmart_SM00589
TRIM26	7726	genome.wustl.edu	37	6	30166570	30166570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003449.3	-1	validated	p.R104Q	0.542	100	0%	65	49.2%	-	-	possibly_damaging(0.67)	tolerated(0.98)	neutral(0.237)	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
MICB	4277	genome.wustl.edu	37	6	31474964	31474964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005931.3	+1	reviewed	p.G260V	0.001	78	0%	81	43.2%	-	-	possibly_damaging(0.593)	deleterious(0)	deleterious(0.649)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
LTA	4049	genome.wustl.edu	37	6	31541368	31541368	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000595.2	+1	reviewed	p.A172	0.999	193	0%	143	28%	-	-	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
RNF5	6048	genome.wustl.edu	37	6	32147867	32147867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006913.3	+1	reviewed	p.V137I	1.000	265	0%	241	47.3%	-	-	benign(0.202)	tolerated(0.38)	neutral(0.037)	NULL
NOTCH4	4855	genome.wustl.edu	37	6	32169209	32169209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004557.3	-1	reviewed	p.A1275V	0.401	73	0%	60	46.7%	-	-	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain
COL11A2	1302	genome.wustl.edu	37	6	33139828	33139828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080680.2	-1	reviewed	p.A1014V	1.000	118	0%	66	36.4%	-	-	benign(0.02)	tolerated(0.41)	neutral(0.016)	HMMPfam_Collagen
ANKS1A	23294	genome.wustl.edu	37	6	34949600	34949600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015245.2	+1	validated	p.A190V	1.000	99	0%	109	45.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FTSJD2	23070	genome.wustl.edu	37	6	37427378	37427378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015050.2	+1	validated	p.R338H	1.000	430	0%	411	46.5%	-	-	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
UBR2	23304	genome.wustl.edu	37	6	42626481	42626481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015255.2	+1	reviewed	p.R1054Q	1.000	186	0.5%	164	43.9%	-	-	benign(0.137)	tolerated(0.12)	neutral(0.272)	NULL
TTBK1	84630	genome.wustl.edu	37	6	43250681	43250683	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032538.1	+1	validated	p.E738in_frame_del	0.981:0.982:0.976	-	-	-	-	-	-	-	-	-	NULL
ABCC10	89845	genome.wustl.edu	37	6	43410878	43410878	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_033450.2	+1	reviewed	p.A771	0.016	35	0%	25	44%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
GPR116	221395	genome.wustl.edu	37	6	46849843	46849843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001098518.1	-1	validated	p.F205S	0.999	210	0%	137	43.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SEA,superfamily_SEA domain
EFHC1	114327	genome.wustl.edu	37	6	52329834	52329834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018100.3	+1	reviewed	p.R353Q	0.621	104	0%	65	47.7%	-	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	HMMSmart_SM00676
PHIP	55023	genome.wustl.edu	37	6	79713458	79713458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017934.5	-1	validated	p.K548E	1.000	123	0%	93	43%	-	-	possibly_damaging(0.892)	tolerated(0.25)	neutral(0.388)	NULL
MANEA	79694	genome.wustl.edu	37	6	96034869	96034870	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000369293	+1	known	p.I189fs	0.020:0.026	-	-	-	-	-	-	-	-	-	NULL
ASCC3	10973	genome.wustl.edu	37	6	101110257	101110257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006828.2	-1	validated	p.W814C	1.000	127	0%	66	51.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
TUBE1	51175	genome.wustl.edu	37	6	112400950	112400950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016262.4	-1	reviewed	p.G112S	1.000	175	0%	127	49.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
ASF1A	25842	genome.wustl.edu	37	6	119222020	119222020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014034.2	+1	reviewed	p.A67T	1.000	168	0%	129	45%	-	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_ASF1_hist_chap,superfamily_ASF1-like
TCP1	6950	genome.wustl.edu	37	6	160200260	160200260	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030752.2	-1	reviewed	p.R496	0.995	201	0%	222	43.7%	-	-	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
IGF2R	3482	genome.wustl.edu	37	6	160500795	160500795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000876.2	+1	reviewed	p.V1888M	0.001	96	0%	65	52.3%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
PDCD2	5134	genome.wustl.edu	37	6	170889100	170889100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002598.2	-1	reviewed	p.E251G	1.000	70	0%	60	48.3%	-	-	probably_damaging(0.98)	tolerated(0.22)	neutral(0.466)	HMMPfam_PDCD2_C
INTS1	26173	genome.wustl.edu	37	7	1542643	1542643	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001080453.2	-1	validated	p.S81	1.000	28	0%	28	50%	-	-	-	-	-	NULL
SDK1	221935	genome.wustl.edu	37	7	3998631	3998631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152744.3	+1	validated	p.G407R	0.002	93	0%	78	42.3%	-	-	benign(0.067)	tolerated(0.16)	neutral(0.064)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SDK1	221935	genome.wustl.edu	37	7	4008892	4008892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152744.3	+1	validated	p.N517S	0.000	325	0%	287	41.1%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIAA0415	9907	genome.wustl.edu	37	7	4824679	4824679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014855.1	+1	validated	p.R311*	0.938	12	0%	29	24.1%	-	-	-	-	-	NULL
RNF216P1	441191	genome.wustl.edu	37	7	5024662	5024662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000360944	+1	known	p.W14R	1.000	131	0%	126	43.7%	-	-	-	-	-	NULL
AHR	196	genome.wustl.edu	37	7	17379836	17379836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001621.4	+1	validated	p.Q796P	0.014	199	0%	142	24.6%	-	-	possibly_damaging(0.582)	deleterious(0.01)	deleterious(0.606)	NULL
FERD3L	222894	genome.wustl.edu	37	7	19184766	19184766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152898.2	-1	validated	p.G74R	0.001	81	0%	87	42.5%	-	-	benign(0.02)	tolerated(0.05)	neutral(0.346)	NULL
ZNRF2	223082	genome.wustl.edu	37	7	30402025	30402025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_147128.3	+1	validated	p.S235Y	1.000	84	0%	70	22.9%	-	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
C7orf25	79020	genome.wustl.edu	37	7	42950303	42950303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001099858.1	-1	validated	p.S124N	1.000	257	0%	189	38.1%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_DUF1308
TNS3	64759	genome.wustl.edu	37	7	47408788	47408788	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022748.10	-1	validated	p.H485	0.003	58	0%	38	65.8%	-	-	-	-	-	NULL
LANCL2	55915	genome.wustl.edu	37	7	55468987	55468987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018697.3	+1	validated	p.A267T	1.000	138	0%	86	47.7%	-	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_LANC_like
FZD9	8326	genome.wustl.edu	37	7	72849163	72849163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003508.2	+1	reviewed	p.V276I	1.000	47	0%	21	47.6%	-	-	benign(0.008)	tolerated(0.51)	neutral(0.009)	HMMPfam_Frizzled
DYNC1I1	1780	genome.wustl.edu	37	7	95442514	95442514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004411.4	+1	validated	p.P77L	0.999	241	0%	168	51.2%	-	-	benign(0.059)	deleterious(0)	neutral(0.449)	superfamily_WD40 repeat-like
ZKSCAN5	23660	genome.wustl.edu	37	7	99123844	99123844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014569.3	+1	reviewed	p.R394H	0.849	313	0%	330	47.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TAF6	6878	genome.wustl.edu	37	7	99708842	99708842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005641.2	-1	reviewed	p.R335C	1.000	83	0%	70	51.4%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF1546
CAPZA2	830	genome.wustl.edu	37	7	116557838	116557838	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006136.2	+1	reviewed	p.R260	1.000	134	0%	100	49%	-	-	-	-	-	PatternScan_F_ACTIN_CAPPING_A_2,HMMPfam_F-actin_cap_A,superfamily_Subunits of heterodimeric actin filament capping protein Capz
FAM40B	57464	genome.wustl.edu	37	7	129091551	129091551	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020704.2	+1	validated	p.R124	0.997	43	0%	29	55.2%	-	-	-	-	-	HMMPfam_N1221
EPHA1	2041	genome.wustl.edu	37	7	143094700	143094700	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005232.4	-1	reviewed	p.L556	0.956	39	0%	38	18.4%	-	-	-	-	-	NULL
RBM33	155435	genome.wustl.edu	37	7	155559268	155559268	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000392761	+1	known	p.A871V	0.919	15	0.000	9	0.444	-	-	-	-	-	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158473474	158473474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017760.5	-1	validated	p.R320Q	0.831	93	0%	94	55.3%	-	-	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	superfamily_ARM repeat
XKR6	286046	genome.wustl.edu	37	8	10755724	10755724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_173683.3	-1	provisional	p.T555M	1.000	131	0%	75	42.7%	-	-	possibly_damaging(0.951)	tolerated(0.11)	deleterious(0.665)	NULL
USP17L7	392197	genome.wustl.edu	37	8	11990851	11990851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000416902	-1	known	p.I223N	0.946	300	0%	206	24.3%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
LONRF1	91694	genome.wustl.edu	37	8	12594517	12594517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152271.3	-1	provisional	p.V416I	1.000	163	0%	125	44.8%	-	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
ADRA1A	148	genome.wustl.edu	37	8	26627858	26627858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_033303.3	-1	reviewed	p.M403I	0.606	476	0%	366	43.7%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
AGPAT6	137964	genome.wustl.edu	37	8	41476277	41476277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_178819.3	+1	validated	p.M376I	1.000	101	0%	127	43.3%	-	-	possibly_damaging(0.676)	deleterious(0.04)	deleterious(0.589)	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885722	47885722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000399732	-1	known	p.R171W	1.000	122	0%	121	40.5%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DCAF4L2	138009	genome.wustl.edu	37	8	88885123	88885123	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152418.3	-1	validated	p.S359	0.072	99	0%	80	48.7%	-	-	-	-	-	superfamily_WD40_like
SLC30A8	169026	genome.wustl.edu	37	8	118184781	118184781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_173851.2	+1	reviewed	p.S324N	0.963	242	0%	202	45.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Cation_efflux
KCNV2	169522	genome.wustl.edu	37	9	2718833	2718833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_133497.2	+1	reviewed	p.T365M	0.990	64	0%	50	46%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Ion_trans,superfamily_SSF81324
LURAP1L	286343	genome.wustl.edu	37	9	12821569	12821569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_203403.1	+1	validated	p.S166N	1.000	309	0%	275	42.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
RRAGA	10670	genome.wustl.edu	37	9	19050047	19050047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006570.4	+1	validated	p.D130E	1.000	131	0%	84	35.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAF1L	138474	genome.wustl.edu	37	9	32630491	32630491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_153809.2	-1	provisional	p.S1696Y	0.999	471	0%	378	42.1%	-	-	benign(0.025)	deleterious(0.02)	neutral(0.384)	NULL
LOC389722	389722	genome.wustl.edu	37	9	43800999	43800999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002342910.1	+1	model	p.G176R	1.000	525	0%	454	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases
TJP2	9414	genome.wustl.edu	37	9	71833275	71833275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004817.3	+1	reviewed	p.I114M	0.975	43	0%	50	52%	-	-	possibly_damaging(0.658)	deleterious(0)	deleterious(0.677)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FAM189A2	9413	genome.wustl.edu	37	9	72003183	72003183	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001127608.1	+1	validated	p.P322	0.000	75	0%	66	43.9%	-	-	-	-	-	NULL
CDK20	23552	genome.wustl.edu	37	9	90588879	90588879	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001039803.2	-1	reviewed	p.L49	1.000	143	0%	140	48.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MSANTD3	91283	genome.wustl.edu	37	9	103204503	103204503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080655.1	+1	predicted	p.R95W	0.976	76	0%	68	14.7%	-	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
SVEP1	79987	genome.wustl.edu	37	9	113173557	113173557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_153366.3	-1	validated	p.R2145Q	1.000	116	0%	86	40.7%	-	-	probably_damaging(0.997)	tolerated(0.62)	deleterious(0.470)	superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113242017	113242017	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_153366.3	-1	validated	p.H795	0.997	370	0%	270	49.3%	-	-	-	-	-	NULL
KCNT1	57582	genome.wustl.edu	37	9	138679947	138679947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020822.2	+1	validated	p.E1168D	1.000	20	0%	14	78.6%	-	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	NULL
DIP2C	22982	genome.wustl.edu	37	10	428644	428644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014974.2	-1	reviewed	p.Q645R	1.000	29	0%	18	61.1%	-	-	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_SSF56801
WDR37	22884	genome.wustl.edu	37	10	1175180	1175180	+	Missense_Mutation	SNP	G	G	A	rs71491341	byCluster;byFrequency	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014023.3	+1	reviewed	p.A461T	1.000	106	0%	86	52.3%	-	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PFKP	5214	genome.wustl.edu	37	10	3155616	3155616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002627.3	+1	validated	p.N426S	1.000	20	0%	13	46.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PFK,superfamily_Phosphofructokinase
FAM208B	54906	genome.wustl.edu	37	10	5789627	5789627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017782.4	+1	validated	p.R1415*	0.551	295	0%	205	43.4%	-	-	-	-	-	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13708280	13708280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018027.3	-1	validated	p.Q474K	1.000	59	0%	42	52.4%	-	-	possibly_damaging(0.891)	tolerated(1)	neutral(0.350)	NULL
FAM188A	80013	genome.wustl.edu	37	10	15883521	15883521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024948.2	-1	validated	p.Y105H	0.987	224	0%	178	46.6%	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
CUBN	8029	genome.wustl.edu	37	10	17171235	17171235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001081.3	-1	reviewed	p.T46I	0.991	120	0%	69	52.2%	-	-	benign(0.429)	deleterious(0.02)	deleterious(0.522)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30749641	30749641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005204.2	+1	reviewed	p.S427L	1.000	109	0%	95	53.7%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZNF37A	7587	genome.wustl.edu	37	10	38407630	38407630	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001007094.2	+1	validated	p.H517	1.000	200	0%	130	39.2%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RET	5979	genome.wustl.edu	37	10	43613825	43613825	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020975.4	+1	reviewed	p.N763	0.917	26	0%	21	28.6%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PCDH15	65217	genome.wustl.edu	37	10	55568712	55568712	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001142769.1	-1	reviewed	p.E1705*	0.610	54	0%	38	55.3%	-	-	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73330675	73330675	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022124.5	+1	reviewed	p.P251	1.000	69	1.4%	44	52.3%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
NRG3	10718	genome.wustl.edu	37	10	84738771	84738771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001010848.3	+1	reviewed	p.R493M	1.000	73	0%	61	16.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
HPSE2	60495	genome.wustl.edu	37	10	100503648	100503648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021828.4	-1	reviewed	p.L259R	1.000	213	0%	164	43.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Glyco_hydro_79n
ADD3	120	genome.wustl.edu	37	10	111885645	111885645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016824.3	+1	reviewed	p.P488Q	1.000	169	0%	155	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123297911	123297911	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000359354	-1	known	p.L254	0.000	126	0%	86	41.9%	-	-	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129902203	129902204	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002417.4	-1	reviewed	p.K2634fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_K167R
MUC5B	727897	genome.wustl.edu	37	11	1265596	1265596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002458.1	+1	validated	p.V2499L	0.000	94	1.1%	100	30%	-	-	benign(0.004)	-	-	NULL
OR51E2	81285	genome.wustl.edu	37	11	4702995	4702995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030774.3	-1	validated	p.A316V	0.787	207	0%	176	41.5%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
GTF2H1	2965	genome.wustl.edu	37	11	18373429	18373429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001142307.1	+1	validated	p.A352V	0.993	199	0%	199	37.7%	-	-	benign(0)	tolerated(1)	-	NULL
ZDHHC13	54503	genome.wustl.edu	37	11	19164648	19164649	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_019028.2	+1	validated	p.C51fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Ankyrin repeat
CRY2	1408	genome.wustl.edu	37	11	45880392	45880392	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021117.3	+1	validated	p.T166	0.000	46	0%	56	41.1%	-	-	-	-	-	HMMPfam_DNA_photolyase,superfamily_DNA_photolyase_N
F2	2147	genome.wustl.edu	37	11	46747499	46747499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000506.3	+1	reviewed	p.R217Q	0.008	36	0%	26	42.3%	-	-	possibly_damaging(0.91)	tolerated(0.67)	neutral(0.365)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
C11orf49	79096	genome.wustl.edu	37	11	47183180	47183180	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001003677.1	+1	validated	p.S335	0.257	67	0%	28	57.1%	-	-	-	-	-	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47372916	47372916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000256.3	-1	reviewed	p.G56S	0.000	9	0.000	7	0.714	-	-	benign(0)	tolerated(0.94)	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
GLYATL1	92292	genome.wustl.edu	37	11	58723411	58723411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080661.2	+1	provisional	p.R305C	0.000	292	0%	223	43.9%	-	-	possibly_damaging(0.736)	deleterious(0.03)	deleterious(0.633)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl_CoA_acyltransferase
LRP5	4041	genome.wustl.edu	37	11	68177394	68177394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002335.2	+1	reviewed	p.A702T	1.000	29	0%	13	76.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
PLEKHB1	58473	genome.wustl.edu	37	11	73362899	73362899	+	Missense_Mutation	SNP	G	G	A	rs184116184	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021200.2	+1	validated	p.R105H	0.998	26	0%	10	40%	-	-	possibly_damaging(0.768)	tolerated(0.07)	deleterious(0.604)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLCO2B1	11309	genome.wustl.edu	37	11	74883517	74883517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007256.3	+1	validated	p.I292T	0.199	54	0%	44	43.2%	-	-	benign(0.147)	deleterious(0.01)	neutral(0.419)	HMMPfam_OATP,superfamily_MFS general substrate transporter
USP35	57558	genome.wustl.edu	37	11	77921488	77921488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020798.2	+1	provisional	p.Y863H	1.000	260	0%	191	33%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases
CHORDC1	26973	genome.wustl.edu	37	11	89936500	89936500	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012124.2	-1	validated	p.S255	1.000	150	0%	159	36.5%	-	-	-	-	-	superfamily_HSP20-like chaperones,HMMPfam_CS
PANX1	24145	genome.wustl.edu	37	11	93913085	93913085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015368.3	+1	reviewed	p.A288V	0.000	280	0%	185	40.5%	-	-	benign(0)	tolerated(1)	-	NULL
MTMR2	8898	genome.wustl.edu	37	11	95578271	95578271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016156.5	-1	reviewed	p.T411M	1.000	239	0%	184	49.5%	-	-	possibly_damaging(0.86)	tolerated(0.08)	deleterious(0.633)	superfamily_SSF52799
CASP5	838	genome.wustl.edu	37	11	104869612	104869612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001136112.1	-1	reviewed	p.H379Y	0.997	314	0.3%	336	46.4%	-	-	benign(0.01)	deleterious(0.04)	neutral(0.349)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
C11orf88	399949	genome.wustl.edu	37	11	111386782	111386782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_207430.2	+1	validated	p.A96T	0.002	230	0%	184	43.5%	-	-	benign(0.094)	tolerated(0.07)	neutral(0.326)	NULL
PCSK7	9159	genome.wustl.edu	37	11	117094803	117094803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004716.2	-1	reviewed	p.V349I	0.978	60	0%	46	37%	-	-	benign(0.159)	tolerated(0.92)	neutral(0.014)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
C11orf63	79864	genome.wustl.edu	37	11	122756667	122756667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024806.2	+1	validated	p.R37Q	0.045	145	0%	85	41.2%	-	-	benign(0.08)	tolerated(0.08)	neutral(0.305)	NULL
OR8B8	26493	genome.wustl.edu	37	11	124310810	124310810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012378.1	-1	provisional	p.P58T	1.000	364	0%	348	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COPS7A	50813	genome.wustl.edu	37	12	6838538	6838538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000455113	+1	known	p.G68D	1.000	91	0%	92	30.4%	-	-	-	-	-	NULL
CD163L1	283316	genome.wustl.edu	37	12	7521563	7521564	+	Splice_Site	INS	-	-	GA	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_174941.4	-1	reviewed	e16-2	0.067:0.055	-	-	-	-	-	-	-	-	-	-
GRIN2B	2904	genome.wustl.edu	37	12	13769446	13769446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000834.3	-1	reviewed	p.P424H	1.000	206	0%	143	42%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_SSF53850
OVOS2	144203	genome.wustl.edu	37	12	31331769	31331769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343151.1	-1	model	p.Y137H	0.339	21	0%	25	52%	-	-	-	-	-	HMMPfam_A2M_N
MLL2	8085	genome.wustl.edu	37	12	49435458	49435458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003482.3	-1	validated	p.R2072S	1.000	34	0%	45	37.8%	-	-	unknown(0)	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
SLC11A2	4891	genome.wustl.edu	37	12	51384607	51384607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000617.2	-1	reviewed	p.V516M	0.942	212	0%	173	37%	-	-	possibly_damaging(0.612)	tolerated(0.06)	deleterious(0.534)	NULL
ESPL1	9700	genome.wustl.edu	37	12	53680492	53680492	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_012291.4	+1	validated	p.A1324	0.202	124	0%	43	48.8%	-	-	-	-	-	NULL
ITGA7	3679	genome.wustl.edu	37	12	56092631	56092631	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001144996.1	-1	reviewed	p.R291	1.000	38	0%	22	22.7%	-	-	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
PAN2	9924	genome.wustl.edu	37	12	56722080	56722080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001127460.2	-1	reviewed	p.G172D	1.000	176	0%	179	14%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
MYO1A	4640	genome.wustl.edu	37	12	57424001	57424001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005379.2	-1	reviewed	p.P862S	1.000	90	0%	82	41.5%	-	-	benign(0.043)	tolerated(0.07)	neutral(0.322)	HMMPfam_Myosin_TH1
CDK4	1019	genome.wustl.edu	37	12	58144707	58144707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000075.2	-1	reviewed	p.V174G	1.000	208	0%	253	47%	-	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LYZ	4069	genome.wustl.edu	37	12	69746970	69746970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000239.2	+1	reviewed	p.R140S	0.000	213	0%	196	39.3%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
LGR5	8549	genome.wustl.edu	37	12	71978306	71978306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003667.2	+1	provisional	p.Y839C	0.001	329	0%	255	47.1%	-	-	benign(0.11)	tolerated(0.17)	neutral(0.068)	superfamily_Family A G protein-coupled receptor-like
CAPS2	84698	genome.wustl.edu	37	12	75683399	75683399	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032606.3	-1	validated	e15+2	0.998	117	0%	103	39.8%	-	-	-	-	-	-
OTOGL	283310	genome.wustl.edu	37	12	80613571	80613574	+	Frame_Shift_Del	DEL	TTTT	TTTT	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TTTT	TTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343203.1	+1	model	p.F15fs	0.783:0.235:0.100:0.000	-	-	-	-	-	-	-	-	-	NULL
CCDC59	29080	genome.wustl.edu	37	12	82746932	82746932	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014167.4	-1	validated	p.*242Q	0.072	155	0%	135	43.7%	-	-	-	-	-	NULL
APPL2	55198	genome.wustl.edu	37	12	105570685	105570685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018171.3	-1	validated	p.Y594C	0.918	355	0%	240	47.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF50729
UNG	7374	genome.wustl.edu	37	12	109547637	109547637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080911.1	+1	reviewed	p.R269W	1.000	169	0%	84	35.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDG,superfamily_DNA glycosylase
RASAL1	8437	genome.wustl.edu	37	12	113553048	113553048	+	Missense_Mutation	SNP	C	C	T	rs185010862	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004658.1	-1	reviewed	p.R342H	1.000	67	1.5%	57	29.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
MED13L	23389	genome.wustl.edu	37	12	116434368	116434368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015335.3	-1	validated	p.C970Y	1.000	147	0.7%	110	43.6%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
RFC5	5985	genome.wustl.edu	37	12	118464694	118464694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007370.4	+1	reviewed	p.S222C	1.000	254	0%	208	54.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF52540
TAOK3	51347	genome.wustl.edu	37	12	118677078	118677078	+	Splice_Site	SNP	C	C	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016281.3	-1	validated	e4-1	1.000	56	0%	45	42.2%	-	-	-	-	-	-
HSPB8	26353	genome.wustl.edu	37	12	119617303	119617303	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014365.2	+1	reviewed	p.G62	0.807	110	0%	55	45.5%	-	-	-	-	-	superfamily_HSP20-like chaperones
VPS33A	65082	genome.wustl.edu	37	12	122745927	122745927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022916.4	-1	validated	p.E122K	1.000	163	0%	188	39.4%	-	-	benign(0.241)	tolerated(0.07)	neutral(0.344)	HMMPfam_Sec1,superfamily_Sec1-like
DNAH10	196385	genome.wustl.edu	37	12	124311345	124311345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_207437.3	+1	validated	p.R1313C	1.000	302	0%	271	45.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_DHC_N2
MTRF1	9617	genome.wustl.edu	37	13	41808078	41808078	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004294.2	-1	reviewed	p.G312	0.734	244	0%	223	41.7%	-	-	-	-	-	HMMPfam_RF-1,PatternScan_RF_PROK_I,superfamily_SSF75620
EPSTI1	94240	genome.wustl.edu	37	13	43543275	43543275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001002264.1	-1	validated	p.E96Q	0.284	88	0%	67	37.3%	-	-	unknown(0)	-	-	NULL
WDFY2	115825	genome.wustl.edu	37	13	52330513	52330513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052950.3	+1	reviewed	p.S327P	1.000	96	0%	75	46.7%	-	-	possibly_damaging(0.777)	tolerated(0.24)	neutral(0.327)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger,superfamily_WD40 repeat-like
PCDH17	27253	genome.wustl.edu	37	13	58206845	58206845	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001040429.2	+1	reviewed	p.G55	0.992	14	0%	14	35.7%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
MBNL2	10150	genome.wustl.edu	37	13	98009806	98009806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_144778.2	+1	reviewed	p.A292V	1.000	236	0%	220	43.2%	-	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
NALCN	259232	genome.wustl.edu	37	13	101717779	101717779	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052867.2	-1	validated	p.D1527	0.822	101	0%	88	53.4%	-	-	-	-	-	NULL
RASA3	22821	genome.wustl.edu	37	13	114793352	114793352	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007368.2	-1	reviewed	p.Y167	0.811	8	0.000	18	0.389	-	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RASA3	22821	genome.wustl.edu	37	13	114839246	114839246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007368.2	-1	reviewed	p.N41S	1.000	67	0%	109	38.5%	-	-	benign(0.009)	tolerated(0.85)	neutral(0.001)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
LOC100132257	100132257	genome.wustl.edu	37	14	19114737	19114737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343306.1	+1	model	p.R61S	0.957	22	0%	19	21.1%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
OR4K14	122740	genome.wustl.edu	37	14	20482439	20482439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001004712.1	-1	provisional	p.R305Q	0.001	227	0%	198	40.9%	-	-	benign(0.005)	tolerated(0.38)	neutral(0.018)	superfamily_SSF81321
TEP1	7011	genome.wustl.edu	37	14	20841704	20841704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007110.4	-1	reviewed	p.G2215R	0.977	92	0%	54	64.8%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000246609	0	genome.wustl.edu	37	14	24035116	24035116	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000502153	+1	known	NULL	0.218	51	0%	28	25%	-	-	unknown(0)	tolerated(0.3)	-	-
DCAF11	80344	genome.wustl.edu	37	14	24589035	24589035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_025230.4	+1	reviewed	p.R341Q	1.000	49	0%	30	50%	-	-	probably_damaging(0.994)	tolerated(0.6)	neutral(0.457)	superfamily_WD40 repeat-like
RALGAPA1	253959	genome.wustl.edu	37	14	36008844	36008844	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_194301.2	-1	provisional	p.D2052	0.992	104	0%	103	44.7%	-	-	-	-	-	NULL
AKAP5	9495	genome.wustl.edu	37	14	64935406	64935406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004857.3	+1	reviewed	p.Q98H	0.001	150	0%	131	44.3%	-	-	benign(0.094)	deleterious(0.02)	neutral(0.390)	HMMPfam_WSK
SPTB	6710	genome.wustl.edu	37	14	65253852	65253852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001024858.2	-1	reviewed	p.S944L	0.070	33	0%	22	45.5%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
DCAF5	8816	genome.wustl.edu	37	14	69520861	69520861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003861.2	-1	validated	p.G848R	1.000	67	0%	39	41%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72128153	72128153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015556.1	+1	provisional	p.H742Y	1.000	122	0%	100	45%	-	-	benign(0.212)	tolerated(0.12)	neutral(0.281)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
RBM25	58517	genome.wustl.edu	37	14	73572969	73572971	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021239.2	+1	validated	p.E484in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NUMB	8650	genome.wustl.edu	37	14	73822459	73822459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001005743.1	-1	reviewed	p.M1V	1.000	112	0%	133	40.6%	-	-	possibly_damaging(0.836)	deleterious(0.01)	deleterious(0.725)	NULL
KIAA1737	85457	genome.wustl.edu	37	14	77579794	77579794	+	Silent	SNP	G	G	A	rs185492654	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_033426.2	+1	validated	p.S111	0.100	144	0%	117	52.1%	-	-	unknown(0)	-	-	NULL
NRXN3	9369	genome.wustl.edu	37	14	79175899	79175899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004796.4	+1	reviewed	p.L148F	1.000	309	0%	212	36.8%	-	-	possibly_damaging(0.544)	tolerated(0.06)	deleterious(0.507)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
DICER1	23405	genome.wustl.edu	37	14	95557629	95557629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030621.3	-1	reviewed	p.E1813G	1.000	724	0%	649	44.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
DYNC1H1	1778	genome.wustl.edu	37	14	102484800	102484800	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001376.4	+1	reviewed	p.H2730	0.993	34	0%	35	48.6%	-	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
ZNF839	55778	genome.wustl.edu	37	14	102792956	102792956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018335.3	+1	validated	p.L308R	1.000	60	0%	56	23.2%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
RYR3	6263	genome.wustl.edu	37	15	34150101	34150101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001036.3	+1	validated	p.D4710N	1.000	72	0%	44	40.9%	-	-	benign(0.304)	-	-	HMMPfam_Ion_trans
GOLGA8A	23015	genome.wustl.edu	37	15	34676171	34676171	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_181077.3	-1	reviewed	p.H215	0.001	278	0%	237	14.8%	-	-	-	-	-	NULL
AP4E1	23431	genome.wustl.edu	37	15	51276218	51276218	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007347.3	+1	validated	e16-1	1.000	251	0%	210	21%	-	-	-	-	-	-
LDHAL6B	92483	genome.wustl.edu	37	15	59499421	59499421	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_033195.1	+1	provisional	p.S94	0.043	298	0%	204	39.7%	-	-	-	-	-	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
VPS13C	54832	genome.wustl.edu	37	15	62214662	62214663	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020821.1	-1	validated	p.S2303fs	0.824:1.000	-	-	-	-	-	-	-	-	-	NULL
ANKDD1A	348094	genome.wustl.edu	37	15	65223814	65223814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000496660	+1	known	p.L176F	0.000	34	0%	37	37.8%	-	-	benign(0.066)	-	-	NULL
DENND4A	10260	genome.wustl.edu	37	15	65954223	65954223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001144823.1	-1	validated	p.E1896G	1.000	60	0%	38	39.5%	-	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	NULL
NEO1	4756	genome.wustl.edu	37	15	73414923	73414923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002499.3	+1	validated	p.A169V	0.032	351	0%	254	45.7%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
STRA6	64220	genome.wustl.edu	37	15	74481557	74481557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001142617.1	-1	reviewed	p.T330I	1.000	18	0%	24	70.8%	-	-	possibly_damaging(0.945)	tolerated(0.09)	deleterious(0.686)	NULL
UBE2Q2	92912	genome.wustl.edu	37	15	76171448	76171448	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_173469.2	+1	validated	p.P248	1.000	61	0%	68	44.1%	-	-	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
HMG20A	10363	genome.wustl.edu	37	15	77770713	77770713	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018200.2	+1	provisional	p.H256	0.822	83	0%	79	40.5%	-	-	-	-	-	NULL
CHRNA3	1136	genome.wustl.edu	37	15	78894003	78894003	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000743.4	-1	reviewed	p.N327	0.996	171	0%	145	46.9%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
SEMA4B	10509	genome.wustl.edu	37	15	90766962	90766962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020210.3	+1	validated	p.T345P	1.000	32	0%	17	23.5%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
MCTP2	55784	genome.wustl.edu	37	15	94927303	94927303	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018349.3	+1	validated	p.T545	0.159	89	0%	93	12.9%	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ALDH1A3	220	genome.wustl.edu	37	15	101438384	101438384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000693.2	+1	reviewed	p.A293T	0.719	22	0%	28	39.3%	-	-	benign(0.124)	deleterious(0.04)	neutral(0.359)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
TSC2	7249	genome.wustl.edu	37	16	2105408	2105409	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000548.3	+1	reviewed	p.F163fs	0.995:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
ERCC4	2072	genome.wustl.edu	37	16	14041927	14041927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005236.2	+1	reviewed	p.A825V	0.996	169	0%	101	49.5%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
BFAR	51283	genome.wustl.edu	37	16	14755842	14755842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016561.2	+1	validated	p.D293N	1.000	175	0%	147	42.2%	-	-	benign(0.418)	deleterious(0.02)	deleterious(0.518)	NULL
PDXDC1	23042	genome.wustl.edu	37	16	15127223	15127223	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015027.2	+1	validated	p.A593	0.781	98	0%	84	44%	-	-	-	-	-	NULL
ENSG00000217794	0	genome.wustl.edu	37	16	21561587	21561587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000403120	-1	known	p.Y37H	0.345	148	0%	96	14.6%	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1
GTF3C1	2975	genome.wustl.edu	37	16	27473664	27473664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001520.3	-1	validated	p.R2023H	1.000	13	0%	11	45.5%	-	-	possibly_damaging(0.93)	tolerated(0.07)	deleterious(0.696)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27519925	27519925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001520.3	-1	validated	p.M393T	1.000	83	0%	50	48%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_B-block_TFIIIC
ATXN2L	11273	genome.wustl.edu	37	16	28847583	28847583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007245.2	+1	reviewed	p.E1075D	0.998	64	0%	50	48%	-	-	unknown(0)	tolerated(0.72)	-	NULL
ALDOA	226	genome.wustl.edu	37	16	30080182	30080182	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000034.2	+1	reviewed	p.D141	0.943	58	0%	60	40%	-	-	-	-	-	HMMPfam_Glycolytic,superfamily_SSF51569
SEPT1	1731	genome.wustl.edu	37	16	30393475	30393475	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052838.2	-1	reviewed	p.T40	0.997	42	0%	53	24.5%	-	-	-	-	-	HMMPfam_Septin,superfamily_SSF52540
ZNF629	23361	genome.wustl.edu	37	16	30795002	30795002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001080417.1	-1	provisional	p.S216N	1.000	52	0%	39	53.8%	-	-	possibly_damaging(0.854)	tolerated(0.24)	neutral(0.366)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ITGAM	3684	genome.wustl.edu	37	16	31286889	31286889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000632.3	+1	reviewed	p.S293N	0.000	142	0%	108	45.4%	-	-	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ZNF267	10308	genome.wustl.edu	37	16	31926029	31926031	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003414.4	+1	validated	p.S155in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ABCC11	85320	genome.wustl.edu	37	16	48210869	48210869	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032583.3	-1	reviewed	p.H1168	0.002	49	0%	25	48%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SALL1	6299	genome.wustl.edu	37	16	51174489	51174489	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002968.2	-1	reviewed	p.L548	1.000	106	0%	101	46.5%	-	-	-	-	-	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53674996	53674996	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015272.2	-1	reviewed	p.T969	0.001	88	0%	114	45.6%	-	-	-	-	-	NULL
KIFC3	3801	genome.wustl.edu	37	16	57805181	57805181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005550.3	-1	validated	p.R232W	1.000	35	0%	46	37%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58608604	58608604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016284.3	-1	validated	p.G630R	1.000	113	0%	165	43%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CMTM3	123920	genome.wustl.edu	37	16	66643336	66643336	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001048251.1	+1	reviewed	e3-2	0.999	17	0%	11	54.5%	-	-	-	-	-	-
CTCF	10664	genome.wustl.edu	37	16	67645967	67645968	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006565.2	+1	reviewed	p.C299fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC12A4	6560	genome.wustl.edu	37	16	67984954	67984954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005072.4	-1	validated	p.A436V	1.000	45	0%	26	19.2%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_AA_permease
ZFHX3	463	genome.wustl.edu	37	16	72832237	72832237	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006885.3	-1	reviewed	p.L1448	0.200	505	0%	308	37%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FA2H	79152	genome.wustl.edu	37	16	74750268	74750268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024306.4	-1	reviewed	p.H339R	1.000	49	0%	36	55.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FA_hydroxylase
WFDC1	58189	genome.wustl.edu	37	16	84353088	84353088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021197.2	+1	reviewed	p.S158L	0.998	76	0%	55	60%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
ZNF778	197320	genome.wustl.edu	37	16	89294508	89294508	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_182531.2	+1	validated	p.L576	0.001	205	0%	259	27%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GAS8	2622	genome.wustl.edu	37	16	90109626	90109626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001481.2	+1	reviewed	p.T437M	1.000	20	0%	18	66.7%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
GP1BA	2811	genome.wustl.edu	37	17	4837619	4837619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000173.5	+1	reviewed	p.A561T	0.011	166	0%	151	13.2%	-	-	possibly_damaging(0.697)	deleterious(0)	deleterious(0.695)	NULL
SPECC1	92521	genome.wustl.edu	37	17	20108622	20108622	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001033553.1	+1	validated	p.T420	0.000	235	0%	166	46.4%	-	-	-	-	-	NULL
PIPOX	51268	genome.wustl.edu	37	17	27372017	27372017	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_016518.2	+1	validated	p.Q85	0.365	96	0%	87	44.8%	-	-	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
CCL8	6355	genome.wustl.edu	37	17	32647853	32647853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005623.2	+1	reviewed	p.A76V	0.952	60	0%	58	43.1%	-	-	possibly_damaging(0.498)	tolerated(0.07)	deleterious(0.486)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
GSDMB	55876	genome.wustl.edu	37	17	38068708	38068708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001042471.1	-1	reviewed	p.T93M	0.000	90	0%	82	46.3%	-	-	benign(0.037)	tolerated(0.05)	neutral(0.347)	HMMPfam_Gasdermin
PSMD3	5709	genome.wustl.edu	37	17	38152591	38152591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002809.2	+1	reviewed	p.K492N	1.000	114	0%	77	50.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rpn3_C
MED24	9862	genome.wustl.edu	37	17	38179414	38179414	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014815.3	-1	reviewed	p.G740	0.497	40	0%	29	41.4%	-	-	-	-	-	NULL
WIPF2	147179	genome.wustl.edu	37	17	38420762	38420762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_133264.4	+1	validated	p.A112T	0.104	108	0.9%	88	47.7%	-	-	benign(0.006)	tolerated(0.36)	neutral(0.020)	NULL
KRT25	147183	genome.wustl.edu	37	17	38911131	38911131	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_181534.3	-1	reviewed	p.S131	0.003	378	0%	330	44.2%	-	-	-	-	-	HMMPfam_Filament
KLHL10	317719	genome.wustl.edu	37	17	40001457	40001457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152467.3	+1	validated	p.C255Y	1.000	59	0%	71	40.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACLY	47	genome.wustl.edu	37	17	40040522	40040522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001096.2	-1	reviewed	p.P693L	1.000	82	0%	65	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ligase_CoA,superfamily_Citrate_synthase_core
KAT2A	2648	genome.wustl.edu	37	17	40269516	40269516	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021078.2	-1	validated	p.T509	0.059	25	0%	18	44.4%	-	-	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
ASB16	92591	genome.wustl.edu	37	17	42248210	42248210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080863.4	+1	reviewed	p.L18P	1.000	15	0%	15	40%	-	-	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
SLC4A1	6521	genome.wustl.edu	37	17	42333090	42333092	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000342.3	-1	reviewed	p.F584in_frame_del	0.995:0.993:0.981	-	-	-	-	-	-	-	-	-	HMMPfam_HCO3_cotransp
PLEKHM1	9842	genome.wustl.edu	37	17	43553041	43553041	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014798.2	-1	reviewed	p.G116	1.000	32	0%	23	30.4%	-	-	-	-	-	HMMPfam_RUN
NXPH3	11248	genome.wustl.edu	37	17	47656116	47656116	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_007225.2	+1	validated	p.P71	0.661	33	0%	18	33.3%	-	-	-	-	-	HMMPfam_Neurexophilin
ANKRD40	91369	genome.wustl.edu	37	17	48776890	48776890	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052855.3	-1	validated	p.S216	0.125	129	0%	134	44%	-	-	-	-	-	NULL
AKAP1	8165	genome.wustl.edu	37	17	55183323	55183323	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003488.3	+1	reviewed	p.K166	0.022	54	0%	42	45.2%	-	-	-	-	-	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56386381	56386381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004758.2	-1	validated	p.R1418C	0.774	38	0%	37	29.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STRADA	92335	genome.wustl.edu	37	17	61791397	61791397	+	Missense_Mutation	SNP	C	C	A	rs149172145	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001003787.2	-1	reviewed	p.E65D	1.000	155	0%	116	47.4%	-	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_Protein kinase-like (PK-like)
AFMID	125061	genome.wustl.edu	37	17	76203085	76203085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000392388	+1	known	p.R83Q	0.000	34	0%	29	44.8%	-	-	unknown(0)	-	-	NULL
ENPP7	339221	genome.wustl.edu	37	17	77709262	77709262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_178543.3	+1	validated	p.E274K	0.000	43	0%	34	47.1%	-	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ACTG1	71	genome.wustl.edu	37	17	79478940	79478941	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001614.2	-1	reviewed	p.K118fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PCYT2	5833	genome.wustl.edu	37	17	79867430	79867430	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002861.3	-1	reviewed	p.R46	1.000	14	0%	20	55%	-	-	-	-	-	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
CEP192	55125	genome.wustl.edu	37	18	13096262	13096262	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032142.3	+1	validated	p.A1575	0.985	154	0%	124	32.3%	-	-	-	-	-	NULL
LAMA3	3909	genome.wustl.edu	37	18	21444795	21444795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_198129.1	+1	reviewed	p.G1544D	1.000	66	0%	42	40.5%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Laminin_B,HMMSmart_SM00281
DSG2	1829	genome.wustl.edu	37	18	29102104	29102104	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001943.3	+1	reviewed	p.S194	0.940	151	0%	145	43.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DTNA	1837	genome.wustl.edu	37	18	32374194	32374194	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001390.4	+1	reviewed	p.F114	1.000	203	0%	197	37.6%	-	-	-	-	-	HMMPfam_efhand_1,superfamily_EF-hand
NARS	4677	genome.wustl.edu	37	18	55282892	55282892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004539.3	-1	validated	p.S108T	0.999	135	0%	172	37.8%	-	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_Nucleic_acid_OB
ALPK2	115701	genome.wustl.edu	37	18	56246440	56246440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_052947.3	-1	validated	p.K523fs	0.000	-	-	-	-	-	-	-	-	-	NULL
C19orf29	58509	genome.wustl.edu	37	19	3612000	3612000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001080543.1	-1	validated	p.R733H	1.000	24	0%	14	57.1%	-	-	possibly_damaging(0.93)	tolerated(0.4)	neutral(0.393)	HMMPfam_CactinC_cactus
CD209	30835	genome.wustl.edu	37	19	7806259	7806259	+	RNA	SNP	T	T	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NR_026692.1	-1	reviewed	NULL	0.396	30	0%	21	42.9%	-	-	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	9047101	9047101	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024690.2	-1	validated	p.S11510	0.000	443	0%	445	41.1%	-	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9056876	9056878	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024690.2	-1	validated	p.P10190in_frame_del	0.004:0.003:0.003	-	-	-	-	-	-	-	-	-	NULL
ZNF560	147741	genome.wustl.edu	37	19	9577360	9577360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152476.2	-1	validated	p.R755C	0.005	202	0%	227	44.5%	-	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
P2RY11	5032	genome.wustl.edu	37	19	10224760	10224760	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002566.4	+1	reviewed	p.A157	0.000	26	0%	18	38.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NFIX	4784	genome.wustl.edu	37	19	13186360	13186360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_002501.2	+1	validated	p.R277H	1.000	37	0%	27	37%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTF_NFI
TRMT1	55621	genome.wustl.edu	37	19	13216125	13216125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001136035.2	-1	validated	p.R597W	0.526	24	0%	20	30%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_CCCH zinc finger
DNAJB1	3337	genome.wustl.edu	37	19	14627470	14627470	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006145.1	-1	provisional	p.E200D	1.000	154	0%	172	43.6%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_HSP40/DnaJ peptide-binding domain
LOC100287986	100287986	genome.wustl.edu	37	19	15687555	15687555	+	Missense_Mutation	SNP	G	G	A	rs141046472	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343618.1	-1	model	p.A676V	0.000	45	0%	47	48.9%	-	-	-	-	-	NULL
CYP4F2	8529	genome.wustl.edu	37	19	15990643	15990643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001082.3	-1	reviewed	p.P394T	0.990	278	0%	209	42.1%	-	-	possibly_damaging(0.86)	deleterious(0.01)	deleterious(0.738)	HMMPfam_p450,superfamily_Cytochrome_P450
SIN3B	23309	genome.wustl.edu	37	19	16952766	16952791	+	Splice_Site	DEL	TGCACACGTACCAGGTAAGAACTCAG	TGCACACGTACCAGGTAAGAACTCAG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TGCACACGTACCAGGTAAGAACTCAG	TGCACACGTACCAGGTAAGAACTCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015260.1	+1	provisional	e5-1	0.999:0.996:1.000:1.000:1.000:1.000:1.000:0.243:0.998:1.000:1.000:1.000:1.000:1.000:1.000:0.993	-	-	-	-	-	-	-	-	-	-
MAP1S	55201	genome.wustl.edu	37	19	17845184	17845184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_018174.4	+1	validated	p.S1043R	1.000	20	0%	16	62.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIK3R2	5296	genome.wustl.edu	37	19	18273784	18273784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005027.2	+1	validated	p.G373R	0.998	27	0%	24	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TMEM161A	54929	genome.wustl.edu	37	19	19232229	19232229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_017814.1	-1	provisional	p.F268L	0.452	14	0%	20	40%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Tmemb_161AB
ZNF66P	7617	genome.wustl.edu	37	19	20989358	20989359	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000425625	+1	known	p.C364fs	0.997:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000213974	0	genome.wustl.edu	37	19	22785624	22785624	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000397112	+1	known	p.S133	0.999	46	2.2%	36	52.8%	-	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31770008	31770008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020856.2	-1	validated	p.V231M	1.000	330	0%	246	48.4%	-	-	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
HAUS5	23354	genome.wustl.edu	37	19	36108087	36108087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015302.1	+1	validated	p.V183M	0.152	92	0%	56	35.7%	-	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36339694	36339694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004646.3	-1	reviewed	p.P339S	1.000	74	0%	46	39.1%	-	-	possibly_damaging(0.898)	tolerated(0.32)	neutral(0.379)	superfamily_Immunoglobulin
RYR1	6261	genome.wustl.edu	37	19	38993258	38993258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000540.2	+1	reviewed	p.A2576T	1.000	18	0%	20	35%	-	-	probably_damaging(0.967)	-	-	NULL
ADCK4	79934	genome.wustl.edu	37	19	41209478	41209478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_024876.3	-1	validated	p.A256V	0.997	18	0%	16	56.2%	-	-	benign(0.125)	tolerated(0.52)	neutral(0.019)	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)
ZNF526	116115	genome.wustl.edu	37	19	42729212	42729212	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_133444.1	+1	provisional	p.H219	1.000	143	0%	127	46.5%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RRAS	6237	genome.wustl.edu	37	19	50140368	50140368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_006270.3	-1	provisional	p.Y58C	1.000	25	0%	22	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH14	79784	genome.wustl.edu	37	19	50796928	50796928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001077186.1	+1	reviewed	p.R1785H	1.000	72	0%	71	45.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Myosin_tail_1
HAS1	3036	genome.wustl.edu	37	19	52219546	52219546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001523.2	-1	reviewed	p.L342I	1.000	243	0%	210	37.6%	-	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	superfamily_SSF53448
ZNF347	84671	genome.wustl.edu	37	19	53644417	53644417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_032584.2	-1	validated	p.S555N	0.000	481	0%	455	47%	-	-	possibly_damaging(0.762)	tolerated(0.54)	neutral(0.290)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF761	388561	genome.wustl.edu	37	19	53958910	53958910	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001008401.3	+1	validated	p.K383	0.639	487	0%	467	52%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN5B	342933	genome.wustl.edu	37	19	56704243	56704243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001080456.2	-1	validated	p.Q60R	0.001	94	0%	56	8.9%	-	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_SCAN,HMMSmart_SCAN
SNAP25	6616	genome.wustl.edu	37	20	10265388	10265388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003081.2	+1	reviewed	p.I44T	1.000	166	0%	125	51.2%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMSmart_SM00397
RRBP1	6238	genome.wustl.edu	37	20	17600998	17600998	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001042576.1	-1	reviewed	p.K742	0.980	95	0%	64	39.1%	-	-	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20232330	20232330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015585.3	+1	validated	p.A751P	0.996	134	0%	128	47.7%	-	-	possibly_damaging(0.922)	tolerated(0.26)	neutral(0.405)	superfamily_FAD/NAD(P)-binding domain
CSTL1	128817	genome.wustl.edu	37	20	23425443	23425443	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_138283.1	+1	reviewed	p.P122	1.000	143	0%	119	39.5%	-	-	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
CST9L	128821	genome.wustl.edu	37	20	23549010	23549010	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080610.2	-1	reviewed	p.I26	0.000	87	0%	80	48.7%	-	-	-	-	-	NULL
CST4	1472	genome.wustl.edu	37	20	23667797	23667797	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001899.2	-1	reviewed	p.G90	0.072	263	0%	213	12.7%	-	-	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
C20orf3	57136	genome.wustl.edu	37	20	24950977	24950977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_020531.2	-1	validated	p.T190I	0.000	224	0%	182	46.2%	-	-	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_Calcium-dependent phosphotriesterase
CTNNBL1	56259	genome.wustl.edu	37	20	36396410	36396410	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030877.3	+1	reviewed	p.Q238	1.000	222	0%	190	41.1%	-	-	-	-	-	superfamily_ARM repeat
CTNNBL1	56259	genome.wustl.edu	37	20	36488425	36488425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_030877.3	+1	reviewed	p.A506V	1.000	123	0%	112	43.8%	-	-	benign(0.078)	tolerated(0.17)	neutral(0.065)	superfamily_ARM repeat
RIMS4	140730	genome.wustl.edu	37	20	43385610	43385610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_182970.2	-1	validated	p.R174C	1.000	209	0%	169	42%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ZNFX1	57169	genome.wustl.edu	37	20	47869285	47869285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_021035.2	-1	validated	p.N1063S	0.999	97	0%	76	17.1%	-	-	benign(0.221)	tolerated(0.18)	neutral(0.078)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SPATA2	9825	genome.wustl.edu	37	20	48523010	48523010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001135773.1	-1	validated	p.R237W	1.000	44	0%	47	48.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAE1	8480	genome.wustl.edu	37	20	55949675	55949675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001015885.1	+1	reviewed	p.A280T	0.973	225	0%	286	44.1%	-	-	possibly_damaging(0.908)	deleterious(0.04)	deleterious(0.710)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CTCFL	140690	genome.wustl.edu	37	20	56090777	56090777	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_080618.2	-1	reviewed	p.T391	0.001	72	0%	62	46.8%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF831	128611	genome.wustl.edu	37	20	57766296	57766296	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_178457.1	+1	provisional	p.R74	0.000	11	0%	15	46.7%	-	-	-	-	-	NULL
GTPBP5	26164	genome.wustl.edu	37	20	60775853	60775853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015666.3	+1	validated	p.Q314R	0.000	82	0%	69	31.9%	-	-	possibly_damaging(0.685)	tolerated(0.21)	neutral(0.288)	HMMPfam_MMR_HSR1,superfamily_SSF52540
TIAM1	7074	genome.wustl.edu	37	21	32526571	32526571	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003253.2	-1	validated	p.Y1055	0.028	100	0%	91	53.8%	-	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
IFNGR2	3460	genome.wustl.edu	37	21	34793916	34793916	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_005534.3	+1	reviewed	p.T112	0.000	122	0%	111	18.9%	-	-	-	-	-	superfamily_Fibronectin type III
DYRK1A	1859	genome.wustl.edu	37	21	38865350	38865350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001396.3	+1	reviewed	p.R328L	1.000	503	0%	353	40.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IGSF5	150084	genome.wustl.edu	37	21	41151154	41151154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001080444.1	+1	provisional	p.R286C	0.007	138	0%	109	38.5%	-	-	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	NULL
RRP1B	23076	genome.wustl.edu	37	21	45096647	45096647	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_015056.2	+1	validated	p.V216	0.421	106	0%	138	47.1%	-	-	-	-	-	HMMPfam_Nop52
COL18A1	80781	genome.wustl.edu	37	21	46907403	46907403	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_130444.2	+1	reviewed	p.R1041*	0.004	12	0.000	7	0.714	-	-	-	-	-	NULL
LOC100288508	100288508	genome.wustl.edu	37	21	47546202	47546202	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343757.1	-1	model	p.S189	0.002	44	0%	55	49.1%	-	-	-	-	-	NULL
LSS	4047	genome.wustl.edu	37	21	47633708	47633708	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001001438.2	-1	reviewed	p.D351	0.026	10	0%	10	60%	-	-	-	-	-	superfamily_Terp_cyc_toroid
HIRA	7290	genome.wustl.edu	37	22	19373148	19373148	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003325.3	-1	reviewed	p.Q409*	1.000	54	0%	28	39.3%	-	-	-	-	-	NULL
FLJ39582	353117	genome.wustl.edu	37	22	21357443	21357443	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NR_027052.1	+1	validated	NULL	1.000	12	0%	15	53.3%	-	-	-	-	-	-
EIF4ENIF1	56478	genome.wustl.edu	37	22	31864172	31864172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_019843.3	-1	reviewed	p.R96L	1.000	154	0%	160	41.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_EIF4E-T
SYN3	8224	genome.wustl.edu	37	22	32934088	32934088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_003490.3	-1	reviewed	p.S309Y	1.000	181	0%	135	47.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
TIMP3	7078	genome.wustl.edu	37	22	33254032	33254032	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_000362.4	+1	reviewed	p.T115	0.096	149	0.7%	110	48.2%	-	-	-	-	-	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
EP300	2033	genome.wustl.edu	37	22	41554474	41554474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001429.3	+1	reviewed	p.R1187H	1.000	40	0%	37	51.4%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_DUF902
BMX	660	genome.wustl.edu	37	X	15568079	15568079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001721.6	+1	reviewed	p.S638P	0.055	211	0%	169	44.4%	-	-	benign(0.032)	tolerated(0.27)	neutral(0.035)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FAM47A	158724	genome.wustl.edu	37	X	34149301	34149301	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_203408.3	-1	validated	p.A365	0.002	232	0%	192	45.3%	-	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35944155	35944155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_152632.3	+1	validated	p.L91V	0.280	153	0%	110	41.8%	-	-	benign(0.256)	tolerated(1)	neutral(0.026)	NULL
USP9X	8239	genome.wustl.edu	37	X	41060463	41060465	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001039590.2	+1	reviewed	p.L1586in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
CASK	8573	genome.wustl.edu	37	X	41394219	41394219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001126055.2	-1	reviewed	p.D692E	1.000	103	0%	53	39.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SH3
TSPYL2	64061	genome.wustl.edu	37	X	53115135	53115135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_022117.3	+1	reviewed	p.N521D	0.031	141	0%	118	22.9%	-	-	benign(0.352)	tolerated(0.67)	neutral(0.114)	NULL
MAGEH1	28986	genome.wustl.edu	37	X	55478972	55478972	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014061.3	+1	reviewed	p.P55	0.000	52	0%	31	45.2%	-	-	-	-	-	NULL
PCDH19	57526	genome.wustl.edu	37	X	99663257	99663257	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001105243.1	-1	reviewed	p.C113	1.000	62	0%	32	25%	-	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
FRMPD3	84443	genome.wustl.edu	37	X	106844915	106844915	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_042978.6	+1	model	p.L1249	0.986	163	0%	106	44.3%	-	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122774407	122774407	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001081550.1	-1	validated	p.P576	1.000	296	0%	313	39.3%	-	-	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122801077	122801077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001081550.1	-1	validated	p.D357G	1.000	544	0%	406	41.4%	-	-	benign(0.208)	tolerated(0.1)	neutral(0.306)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123615602	123615602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_014253.3	-1	reviewed	p.A1303D	1.000	225	0%	191	45%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF101898
CCDC160	347475	genome.wustl.edu	37	X	133379675	133379675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001101357.1	+1	provisional	p.K282T	0.398	95	0%	93	47.3%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
GPR112	139378	genome.wustl.edu	37	X	135431196	135431196	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_153834.3	+1	reviewed	p.A1777	0.000	734	0%	570	43.3%	-	-	-	-	-	NULL
CDR1	1038	genome.wustl.edu	37	X	139866322	139866322	+	Silent	SNP	C	C	T	rs191541717	by1000genomes	TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004065.2	-1	reviewed	p.S70	0.078	588	0%	419	41.8%	-	-	-	-	-	NULL
LOC392555	392555	genome.wustl.edu	37	X	141260875	141260875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	XM_002343852.1	-1	model	p.L351P	0.010	397	0%	291	41.2%	-	-	-	-	-	HMMPfam_MAGE
GPR50	9248	genome.wustl.edu	37	X	150349091	150349091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_004224.3	+1	reviewed	p.A346T	0.002	371	0%	326	37.4%	-	-	benign(0.316)	tolerated(0.2)	neutral(0.148)	NULL
ATP2B3	492	genome.wustl.edu	37	X	152813316	152813316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	NM_001001344.2	+1	reviewed	p.A328T	1.000	51	0%	39	46.2%	-	-	benign(0.408)	tolerated(0.13)	neutral(0.385)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
IL9R	3581	genome.wustl.edu	37	X	155227416	155227416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GH-01A-21W-A062-09	TCGA-A5-A0GH-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ca16128d-bf80-487e-aa41-ab38f10485de	7e4a42df-c683-49fe-89fe-9e95b9f070df	ENST00000369423	+1	known	p.Q3R	0.001	94	0%	60	56.7%	-	-	unknown(0)	-	-	NULL
