Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
FMO5	2330	genome.wustl.edu	37	1	146687330	146687330	+	Silent	SNP	T	T	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001461.2	-1	reviewed	p.R106	0.068	114	0%	112	41.1%	-	-	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
OR10J3	441911	genome.wustl.edu	37	1	159283723	159283723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001004467.1	-1	provisional	p.A243T	0.997	127	0%	146	41.1%	-	-	benign(0.333)	deleterious(0.01)	deleterious(0.510)	HMMPfam_7tm_1,superfamily_SSF81321
RC3H1	149041	genome.wustl.edu	37	1	173907927	173907927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_172071.2	-1	validated	p.D1112N	1.000	221	0%	244	35.7%	-	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	NULL
TNR	7143	genome.wustl.edu	37	1	175372574	175372574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_003285.2	-1	validated	p.S226R	0.934	73	0%	104	45.2%	-	-	possibly_damaging(0.786)	tolerated(0.39)	neutral(0.310)	HMMSmart_SM00181,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_EGF/Laminin
PDIA6	10130	genome.wustl.edu	37	2	10927483	10927483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_005742.2	-1	validated	p.A361T	1.000	149	0%	195	14.9%	-	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	superfamily_Thioredoxin-like
GEN1	348654	genome.wustl.edu	37	2	17961897	17961897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001130009.1	+1	validated	p.P473L	0.513	86	0%	80	42.5%	-	-	benign(0.288)	deleterious(0.04)	neutral(0.438)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159028648	159028648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_138803.3	-1	validated	p.E585K	1.000	131	0%	90	37.8%	-	-	benign(0.33)	tolerated(0.13)	neutral(0.356)	NULL
SCN1A	6323	genome.wustl.edu	37	2	166894510	166894510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_006920.4	-1	reviewed	p.G897S	1.000	174	0%	220	36.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
CX3CR1	1524	genome.wustl.edu	37	3	39307964	39307964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001337.3	-1	reviewed	p.E13K	0.001	54	0%	81	34.6%	-	-	benign(0.071)	tolerated(0.11)	neutral(0.277)	superfamily_Family A G protein-coupled receptor-like
CTNNB1	1499	genome.wustl.edu	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	byCluster	TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001098209.1	+1	reviewed	p.S45F	1.000	71	0%	86	25.6%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KBTBD5	131377	genome.wustl.edu	37	3	42727820	42727820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_152393.2	+1	validated	p.R237H	1.000	17	0%	21	38.1%	-	-	benign(0.013)	tolerated(0.19)	neutral(0.050)	HMMPfam_BACK
PBRM1	55193	genome.wustl.edu	37	3	52620565	52620565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_018165.4	-1	validated	p.R1056Q	1.000	199	0%	223	37.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLD1	5337	genome.wustl.edu	37	3	171410200	171410200	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_002662.3	-1	validated	p.Y420	1.000	145	0%	189	38.6%	-	-	-	-	-	superfamily_Phospholipase D/nuclease
CCDC39	339829	genome.wustl.edu	37	3	180334333	180334333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_181426.1	-1	validated	p.R853C	0.000	111	0%	100	30%	-	-	unknown(0)	-	-	NULL
LRBA	987	genome.wustl.edu	37	4	151236754	151236754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_006726.2	-1	validated	p.D2562G	1.000	81	0%	100	51%	-	-	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	superfamily_WD40 repeat-like
C5orf42	65250	genome.wustl.edu	37	5	37227086	37227086	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	ENST00000508244	-1	known	p.S537	0.001	43	0%	48	33.3%	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589212	67589229	+	In_Frame_Del	DEL	TGTGGTTGAATTAATAAA	TGTGGTTGAATTAATAAA	-	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	TGTGGTTGAATTAATAAA	TGTGGTTGAATTAATAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_181523.1	+1	reviewed	p.VVELIN401in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
OTP	23440	genome.wustl.edu	37	5	76932706	76932706	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_032109.2	-1	reviewed	p.P129	0.929	46	0%	54	18.5%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
TRPC7	57113	genome.wustl.edu	37	5	135610458	135610458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	ENST00000513104	-1	known	p.R344H	1.000	90	1.1%	124	21.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140475802	140475802	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_018936.2	+1	reviewed	p.S476	0.027	90	0%	151	35.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ARAP3	64411	genome.wustl.edu	37	5	141052313	141052313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_022481.5	-1	reviewed	p.E425K	1.000	40	0%	79	35.4%	-	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
BTBD9	114781	genome.wustl.edu	37	6	38256151	38256151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001099272.1	-1	reviewed	p.D451N	1.000	131	0%	185	39.5%	-	-	possibly_damaging(0.696)	tolerated(0.18)	neutral(0.305)	superfamily_Gal_bind_like
GLP1R	2740	genome.wustl.edu	37	6	39034026	39034026	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_002062.3	+1	validated	p.Y152	0.979	157	0%	204	36.8%	-	-	-	-	-	HMMPfam_7tm_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like
ENPP5	59084	genome.wustl.edu	37	6	46135827	46135827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_021572.4	-1	validated	p.G58V	1.000	73	0%	92	27.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
MIR588	693173	genome.wustl.edu	37	6	126805843	126805843	+	RNA	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	ENST00000384900	+1	known	NULL	0.128	27	0%	25	56%	-	-	-	-	-	-
ADGB	79747	genome.wustl.edu	37	6	146977924	146977924	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_024694.3	+1	provisional	p.I140	1.000	109	0%	86	27.9%	-	-	-	-	-	HMMSmart_SM00230,superfamily_Cysteine proteinases
GPR31	2853	genome.wustl.edu	37	6	167571176	167571176	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_005299.2	-1	validated	p.P48	0.993	16	0%	10	40%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TYW1	55253	genome.wustl.edu	37	7	66582543	66582543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_018264.2	+1	validated	p.R546C	1.000	200	0%	242	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
POM121	9883	genome.wustl.edu	37	7	72413472	72413472	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_172020.1	+1	reviewed	p.P715	0.004	60	0%	83	21.7%	-	-	-	-	-	NULL
HEPACAM2	253012	genome.wustl.edu	37	7	92848715	92848715	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001039372.1	-1	provisional	p.G43	1.000	173	0%	213	39%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PTPRZ1	5803	genome.wustl.edu	37	7	121668612	121668612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_002851.2	+1	reviewed	p.C1665*	1.000	189	0%	236	17.4%	-	-	-	-	-	NULL
HTR5A	3361	genome.wustl.edu	37	7	154863136	154863136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_024012.2	+1	reviewed	p.P176L	1.000	88	0%	118	34.7%	-	-	benign(0.229)	deleterious(0)	neutral(0.468)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CHRNA2	1135	genome.wustl.edu	37	8	27327284	27327284	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_000742.3	-1	reviewed	p.I96	0.803	62	0%	92	32.6%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
NRG1	3084	genome.wustl.edu	37	8	32621864	32621864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_013956.3	+1	reviewed	p.E628K	0.974	20	0%	43	37.2%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Neuregulin
ABRA	137735	genome.wustl.edu	37	8	107773628	107773630	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_139166.4	-1	validated	p.K261in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113275879	113275879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_198123.1	-1	validated	p.P3284L	1.000	76	0%	144	28.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
KANK1	23189	genome.wustl.edu	37	9	712177	712177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_015158.2	+1	reviewed	p.R471C	1.000	79	0%	91	31.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
ABL1	25	genome.wustl.edu	37	9	133729537	133729537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_007313.2	+1	reviewed	p.A75T	0.997	143	0%	143	37.1%	-	-	benign(0.003)	tolerated(0.05)	neutral(0.345)	superfamily_SH3-domain
ARID5B	84159	genome.wustl.edu	37	10	63845593	63845605	+	Frame_Shift_Del	DEL	CAAACATGAAATA	CAAACATGAAATA	-	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	CAAACATGAAATA	CAAACATGAAATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_032199.2	+1	validated	p.K445fs	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692864	89692874	+	Frame_Shift_Del	DEL	CAATCATGTTG	CAATCATGTTG	-	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	CAATCATGTTG	CAATCATGTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	ENST00000371953	+1	known	p.N117fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
SORBS1	10580	genome.wustl.edu	37	10	97096798	97096798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001034954.1	-1	validated	p.W1040L	0.984	205	0%	231	40.3%	-	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
WNT8B	7479	genome.wustl.edu	37	10	102241669	102241669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_003393.3	+1	reviewed	p.G123V	1.000	115	0%	150	40%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_wnt,HMMSmart_WNT1
DNHD1	144132	genome.wustl.edu	37	11	6566366	6566366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_144666.2	+1	provisional	p.C1399W	0.000	85	0%	151	39.7%	-	-	possibly_damaging(0.542)	tolerated(0.06)	deleterious(0.506)	HMMPfam_DHC_N2
SCUBE2	57758	genome.wustl.edu	37	11	9049103	9049103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_020974.2	-1	validated	p.R808G	1.000	146	0%	229	41.9%	-	-	benign(0.192)	deleterious(0.03)	neutral(0.383)	superfamily_Spermadhesin CUB domain
NUP160	23279	genome.wustl.edu	37	11	47837087	47837087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_015231.1	-1	validated	p.H544Y	0.017	237	0%	290	40%	-	-	benign(0.151)	tolerated(0.06)	neutral(0.336)	NULL
PPP2R5B	5526	genome.wustl.edu	37	11	64694308	64694308	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_006244.3	+1	reviewed	p.N108	0.990	118	0%	188	38.3%	-	-	-	-	-	HMMPfam_B56
CARNS1	57571	genome.wustl.edu	37	11	67186369	67186369	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_020811.1	+1	validated	p.P46	0.057	38	0%	52	32.7%	-	-	-	-	-	NULL
IFT46	56912	genome.wustl.edu	37	11	118425753	118425753	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_020153.3	-1	validated	p.F153	1.000	137	0%	169	40.8%	-	-	-	-	-	NULL
DDX6	1656	genome.wustl.edu	37	11	118656929	118656929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_004397.4	-1	reviewed	p.I11T	1.000	86	0%	133	41.4%	-	-	benign(0.031)	deleterious(0)	neutral(0.446)	NULL
PVRL1	5818	genome.wustl.edu	37	11	119549253	119549253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_002855.4	-1	reviewed	p.R101Q	0.990	51	0%	81	48.1%	-	-	possibly_damaging(0.73)	tolerated(0.39)	neutral(0.283)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CLEC7A	64581	genome.wustl.edu	37	12	10280146	10280146	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	ENST00000422474	-1	known	p.P134	0.077	139	0%	135	32.6%	-	-	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_033360.2	-1	reviewed	p.G12V	1.000	172	0%	267	37.8%	-	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR66	144406	genome.wustl.edu	37	12	122389385	122389385	+	Splice_Site	SNP	G	G	A	rs150901834	by1000genomes	TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_144668.4	+1	validated	e8-1	0.955	313	0%	375	32%	-	-	-	-	-	-
KNTC1	9735	genome.wustl.edu	37	12	123087694	123087694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_014708.4	+1	reviewed	p.K1669E	0.917	98	0%	115	11.3%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_Rod_C
ZMYM2	7750	genome.wustl.edu	37	13	20577068	20577068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_003453.2	+1	validated	p.S309*	1.000	164	0%	212	39.2%	-	-	-	-	-	NULL
POU4F1	5457	genome.wustl.edu	37	13	79175715	79175715	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_006237.3	-1	validated	p.P365	0.940	57	0%	94	17%	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
GPR135	64582	genome.wustl.edu	37	14	59930847	59930847	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_022571.5	-1	validated	p.S366	0.725	5	0.000	9	0.556	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SEMA6D	80031	genome.wustl.edu	37	15	48063190	48063190	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_153618.1	+1	reviewed	p.P810	0.964	74	0%	92	32.6%	-	-	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48782151	48782151	+	Silent	SNP	G	G	A	rs150126098	by1000genomes	TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_000138.4	-1	reviewed	p.C993	0.494	80	0%	88	44.3%	-	-	-	-	-	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
RNF111	54778	genome.wustl.edu	37	15	59359127	59359127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_017610.6	+1	reviewed	p.H511Y	1.000	161	0%	230	38.3%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
USP31	57478	genome.wustl.edu	37	16	23085117	23085117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_020718.3	-1	validated	p.T754M	1.000	69	0%	89	39.3%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_UCH,superfamily_Cysteine proteinases
CTCF	10664	genome.wustl.edu	37	16	67660616	67660616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_006565.2	+1	reviewed	p.Q506*	1.000	84	0%	117	41%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDH1	999	genome.wustl.edu	37	16	68853328	68853328	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_004360.3	+1	reviewed	p.G571fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GLG1	2734	genome.wustl.edu	37	16	74525111	74525111	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_012201.5	-1	validated	p.R413*	1.000	106	0%	174	37.4%	-	-	-	-	-	HMMPfam_Cys_rich_FGFR
CAMTA2	23125	genome.wustl.edu	37	17	4883229	4883229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_015099.3	-1	validated	p.P463L	0.951	12	0%	19	42.1%	-	-	benign(0.117)	deleterious(0)	neutral(0.454)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7406810	7406810	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_000937.3	+1	validated	e18+1	1.000	77	0%	117	47%	-	-	-	-	-	-
CDRT15	146822	genome.wustl.edu	37	17	14139188	14139188	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001007530.1	-1	provisional	p.P184	0.012	82	0%	97	22.7%	-	-	-	-	-	NULL
NFE2L1	4779	genome.wustl.edu	37	17	46133897	46133897	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_003204.2	+1	validated	p.G220	0.037	141	0%	158	38.6%	-	-	-	-	-	NULL
SLC26A11	284129	genome.wustl.edu	37	17	78219991	78219991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_173626.3	+1	reviewed	p.A379V	0.989	19	0%	24	50%	-	-	benign(0.018)	tolerated(0.11)	neutral(0.272)	HMMPfam_Sulfate_transp
CETN1	1068	genome.wustl.edu	37	18	580850	580850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_004066.1	+1	reviewed	p.E148K	1.000	81	0%	143	35%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
LOC729774	729774	genome.wustl.edu	37	18	14361898	14361898	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	XM_001131264.2	-1	model	p.S27	0.167	36	0%	43	34.9%	-	-	-	-	-	NULL
C18orf8	29919	genome.wustl.edu	37	18	21107861	21107861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_013326.3	+1	validated	p.A431V	0.084	78	0%	91	37.4%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
OR7D4	125958	genome.wustl.edu	37	19	9325149	9325149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001005191.1	-1	provisional	p.R122Q	0.998	112	0%	185	33.5%	-	-	benign(0.083)	deleterious(0.03)	neutral(0.370)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
S1PR2	9294	genome.wustl.edu	37	19	10335260	10335260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_004230.3	-1	validated	p.R108W	1.000	10	0%	21	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ZSWIM4	65249	genome.wustl.edu	37	19	13941180	13941180	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_023072.2	+1	validated	p.C762	1.000	26	0%	37	29.7%	-	-	-	-	-	NULL
SYCN	342898	genome.wustl.edu	37	19	39694673	39694673	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001080468.2	-1	provisional	p.A74	0.002	24	0%	23	30.4%	-	-	-	-	-	NULL
ZNF576	79177	genome.wustl.edu	37	19	44103126	44103126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001145347.1	+1	validated	p.A77T	0.998	73	0%	101	42.6%	-	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
TMC4	147798	genome.wustl.edu	37	19	54673291	54673291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_001145303.1	-1	validated	p.R140Q	0.000	91	0%	118	43.2%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
SGK2	10110	genome.wustl.edu	37	20	42198072	42198072	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_016276.3	+1	reviewed	p.R152	0.998	46	0%	65	29.2%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYLC1	1538	genome.wustl.edu	37	X	83129492	83129492	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_021118.1	+1	provisional	p.G592	0.000	89	0%	78	30.8%	-	-	-	-	-	NULL
MAGEC2	51438	genome.wustl.edu	37	X	141291699	141291699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0VO-01A-21D-A10G-09	TCGA-A5-A0VO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d3e15789-ef5b-4983-ac0f-fad6d86ddac8	b5d4fdc7-aeb4-4f94-9d0e-5a5bda0f8cad	NM_016249.3	-1	reviewed	p.W25C	0.000	73	0%	87	40.2%	-	-	possibly_damaging(0.649)	deleterious(0.02)	deleterious(0.611)	NULL
