Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
ICMT	23463	genome.wustl.edu	37	1	6285228	6285228	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012405.3	-1	reviewed	p.I256N	1.000	31	0%	99	37.4%	-	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_ICMT
CORT	1325	genome.wustl.edu	37	1	10510304	10510304	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001302.3	+1	reviewed	p.L58	0.997	38	0%	55	30.9%	-	-	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19482763	19482763	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020765.2	-1	validated	e42+2	1.000	192	0%	255	37.6%	-	-	-	-	-	-
EPHB2	2048	genome.wustl.edu	37	1	23235608	23235608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004442.6	+1	reviewed	p.M817V	1.000	63	0%	127	40.2%	-	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
LUZP1	7798	genome.wustl.edu	37	1	23419766	23419766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001142546.1	-1	reviewed	p.Q330R	1.000	297	0%	364	44.5%	-	-	benign(0.019)	tolerated(0.79)	neutral(0.002)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106369	27106369	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006015.4	+1	reviewed	p.V1994fs	1.000	-	-	-	-	-	-	-	-	-	NULL
RLF	6018	genome.wustl.edu	37	1	40705868	40705868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012421.3	+1	validated	p.S1832G	1.000	101	0%	176	40.3%	-	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42048587	42048587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024503.3	-1	validated	p.L628F	0.991	171	0%	185	33.5%	-	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
TMEM125	128218	genome.wustl.edu	37	1	43738576	43738576	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_144626.2	+1	validated	p.S61	0.995	5	0.000	25	0.320	-	-	-	-	-	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48699342	48699342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001135181.1	+1	validated	p.V375A	1.000	69	0%	85	35.3%	-	-	probably_damaging(0.994)	tolerated(0.35)	deleterious(0.473)	HMMPfam_SSF
INADL	10207	genome.wustl.edu	37	1	62330161	62330161	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_176877.2	+1	reviewed	p.A897	0.000	204	0%	300	33%	-	-	-	-	-	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92182179	92182179	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003243.3	-1	validated	p.P551	0.317	548	0%	633	36.8%	-	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
ARHGAP29	9411	genome.wustl.edu	37	1	94652072	94652072	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004815.3	-1	validated	p.P588fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Cysteine-rich domain
SASS6	163786	genome.wustl.edu	37	1	100572937	100572937	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_194292.1	-1	validated	p.E440V	1.000	136	0%	84	38.1%	-	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
COL11A1	1301	genome.wustl.edu	37	1	103345411	103345411	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_080629.2	-1	reviewed	p.L1713R	1.000	85	0%	131	43.5%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_COLFI
CELSR2	1952	genome.wustl.edu	37	1	109808369	109808369	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001408.2	+1	reviewed	p.R1914	0.999	32	0%	50	44%	-	-	-	-	-	HMMSmart_TNFR
CTTNBP2NL	55917	genome.wustl.edu	37	1	112999120	112999120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018704.2	+1	validated	p.P336S	0.010	344	0%	586	40.3%	-	-	benign(0.167)	deleterious(0)	neutral(0.460)	HMMPfam_CortBP2
PTGFRN	5738	genome.wustl.edu	37	1	117504011	117504011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020440.2	+1	provisional	p.R454C	0.988	386	0%	804	42.2%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FAM46C	54855	genome.wustl.edu	37	1	118166654	118166654	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017709.3	+1	validated	p.L388	1.000	42	0%	57	38.6%	-	-	-	-	-	NULL
WDR3	10885	genome.wustl.edu	37	1	118482099	118482099	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006784.2	+1	reviewed	e5-1	1.000	311	0%	291	34.7%	-	-	-	-	-	-
ANKRD34A	284615	genome.wustl.edu	37	1	145474716	145474716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001039888.2	+1	validated	p.R463M	1.000	24	0%	33	33.3%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
MTMR11	10903	genome.wustl.edu	37	1	149907556	149907556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000439741	-1	known	p.L62P	1.000	109	0%	157	19.1%	-	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	superfamily_PH domain-like
ADAMTSL4	54507	genome.wustl.edu	37	1	150531813	150531813	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_019032.4	+1	reviewed	p.V938	0.973	17	0%	41	29.3%	-	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
POGZ	23126	genome.wustl.edu	37	1	151413408	151413408	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015100.2	-1	reviewed	p.N93	1.000	83	0%	379	29.3%	-	-	-	-	-	NULL
LINGO4	339398	genome.wustl.edu	37	1	151774394	151774394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001004432.2	-1	provisional	p.N263D	1.000	46	0%	134	19.4%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_SSF52058
FLG	2312	genome.wustl.edu	37	1	152282021	152282021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002016.1	-1	reviewed	p.R1781C	0.000	271	0%	500	31.2%	-	-	unknown(0)	tolerated(0.05)	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152733041	152733041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001025231.1	+1	provisional	p.R326Q	0.993	114	0%	185	24.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ADAR	103	genome.wustl.edu	37	1	154574933	154574933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001111.3	-1	reviewed	p.P62Q	0.000	114	0%	259	30.5%	-	-	benign(0.007)	tolerated(0.23)	neutral(0.042)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155307543	155307543	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018489.2	-1	reviewed	e27-1	1.000	103	0%	318	28.9%	-	-	-	-	-	-
IQGAP3	128239	genome.wustl.edu	37	1	156504336	156504336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_178229.4	-1	validated	p.R1233W	0.013	39	0%	82	23.2%	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMSmart_RasGAP,superfamily_Rho_GAP
COPA	1314	genome.wustl.edu	37	1	160283821	160283821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001098398.1	-1	reviewed	p.N267K	1.000	128	0%	225	22.2%	-	-	possibly_damaging(0.715)	tolerated(0.15)	deleterious(0.500)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
OLFML2B	25903	genome.wustl.edu	37	1	161989923	161989923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015441.1	-1	provisional	p.C75F	1.000	75	0%	210	29%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167082968	167082968	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001080426.1	+1	provisional	p.A44	0.847	139	0%	347	22.8%	-	-	-	-	-	NULL
PRRX1	5396	genome.wustl.edu	37	1	170689014	170689014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022716.2	+1	reviewed	p.R130Q	1.000	91	0%	220	27.3%	-	-	possibly_damaging(0.454)	deleterious(0.01)	deleterious(0.554)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
TNN	63923	genome.wustl.edu	37	1	175066759	175066759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022093.1	+1	validated	p.H599Y	0.022	52	0%	180	27.8%	-	-	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RNASEL	6041	genome.wustl.edu	37	1	182554717	182554717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021133.2	-1	reviewed	p.Q409*	0.001	189	0%	494	24.5%	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
APOBEC4	403314	genome.wustl.edu	37	1	183617262	183617262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_203454.2	-1	reviewed	p.A219T	0.895	174	0%	278	29.1%	-	-	benign(0.082)	tolerated(0.71)	neutral(0.007)	NULL
SWT1	54823	genome.wustl.edu	37	1	185143659	185143659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001105518.1	+1	validated	p.C127Y	0.000	91	0%	93	10.8%	-	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185267293	185267293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006469.4	-1	validated	p.I601M	0.231	366	0%	580	26.7%	-	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ASPM	259266	genome.wustl.edu	37	1	197074245	197074245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018136.4	-1	reviewed	p.S1379F	0.999	98	0%	210	20.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MDM4	4194	genome.wustl.edu	37	1	204494632	204494632	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NR_024171.1	+1	validated	NULL	0.002	65	0%	110	29.1%	-	-	-	-	-	-
CR2	1380	genome.wustl.edu	37	1	207647057	207647057	+	Missense_Mutation	SNP	C	C	T	rs144014118	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001006658.2	+1	reviewed	p.R716W	0.004	191	0%	384	27.1%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HSD11B1	3290	genome.wustl.edu	37	1	209907848	209907848	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005525.2	+1	reviewed	p.D287	0.004	155	0%	285	24.2%	-	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
KCNK2	3776	genome.wustl.edu	37	1	215408315	215408315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001017425.2	+1	reviewed	p.A370T	1.000	154	0%	279	30.8%	-	-	benign(0.422)	tolerated(0.1)	neutral(0.423)	NULL
IARS2	55699	genome.wustl.edu	37	1	220284258	220284258	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018060.3	+1	validated	p.T486	0.002	76	0%	123	29.3%	-	-	-	-	-	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
HLX	3142	genome.wustl.edu	37	1	221054556	221054556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021958.3	+1	validated	p.G205S	0.000	136	0%	261	33.7%	-	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228511197	228511197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001098623.1	+1	reviewed	p.G5181D	1.000	9	0.000	38	0.632	-	-	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
URB2	9816	genome.wustl.edu	37	1	229773750	229773750	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014777.2	+1	provisional	p.Q1130	0.976	17	0%	62	33.9%	-	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237774132	237774132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001035.2	+1	reviewed	p.R1585H	0.997	41	0%	87	23%	-	-	probably_damaging(1)	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240255883	240255883	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020066.4	+1	validated	p.P158	0.001	14	0%	22	22.7%	-	-	-	-	-	NULL
EXO1	9156	genome.wustl.edu	37	1	242020673	242020673	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006027.4	+1	reviewed	p.C144	0.989	169	0%	231	22.1%	-	-	-	-	-	HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,superfamily_PIN domain-like
C1orf101	257044	genome.wustl.edu	37	1	244735733	244735735	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130957.1	+1	validated	p.T538in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
KIF26B	55083	genome.wustl.edu	37	1	245847693	245847693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018012.3	+1	provisional	p.T806M	1.000	11	0%	25	24%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00129
CNST	163882	genome.wustl.edu	37	1	246755034	246755034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152609.2	+1	validated	p.A57V	0.001	98	0%	254	27.6%	-	-	possibly_damaging(0.664)	deleterious(0)	deleterious(0.679)	NULL
SNTG2	54221	genome.wustl.edu	37	2	1079325	1079325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018968.3	+1	reviewed	p.S65N	0.451	107	0%	138	39.9%	-	-	benign(0.11)	tolerated(0.34)	neutral(0.032)	superfamily_PDZ domain-like
PXDN	7837	genome.wustl.edu	37	2	1652663	1652663	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012293.1	-1	validated	p.E963	0.996	10	0%	15	46.7%	-	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
RNF144A	9781	genome.wustl.edu	37	2	7179799	7179799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014746.3	+1	reviewed	p.V263M	1.000	182	0%	201	41.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING
GREB1	9687	genome.wustl.edu	37	2	11777860	11777860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014668.3	+1	reviewed	p.A1789T	0.943	94	0%	162	43.2%	-	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	NULL
CAD	790	genome.wustl.edu	37	2	27462219	27462219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004341.3	+1	reviewed	p.W1758C	1.000	30	0%	56	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Metalo_hydrolase
HNRPLL	92906	genome.wustl.edu	37	2	38795343	38795343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_138394.3	-1	validated	p.P524L	1.000	55	0%	57	40.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_RNA-binding domain RBD
PSME4	23198	genome.wustl.edu	37	2	54114532	54114532	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014614.2	-1	validated	p.P1531	0.997	148	0%	203	42.4%	-	-	-	-	-	superfamily_ARM repeat
BCL11A	53335	genome.wustl.edu	37	2	60689438	60689438	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022893.3	-1	reviewed	p.H203	1.000	32	0%	82	30.5%	-	-	-	-	-	NULL
MDH1	4190	genome.wustl.edu	37	2	63834045	63834045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005917.2	+1	reviewed	p.R310H	1.000	80	0%	94	48.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ldh_1_C,superfamily_LDH C-terminal domain-like
NAGK	55577	genome.wustl.edu	37	2	71305599	71305599	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017567.4	+1	validated	p.S332	0.000	30	0%	69	31.9%	-	-	-	-	-	NULL
SMYD5	10322	genome.wustl.edu	37	2	73446020	73446020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006062.2	+1	validated	p.R43Q	0.986	20	0%	64	32.8%	-	-	probably_damaging(0.975)	tolerated(0.05)	deleterious(0.762)	HMMSmart_SET,superfamily_SSF82199
NAT8	9027	genome.wustl.edu	37	2	73868686	73868686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003960.3	-1	reviewed	p.G24W	0.797	80	0%	137	42.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acyl_CoA_acyltransferase
SLC4A5	57835	genome.wustl.edu	37	2	74475491	74475491	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021196.3	-1	reviewed	p.F592	0.988	50	0%	71	39.4%	-	-	-	-	-	HMMPfam_HCO3_cotransp
IL1RL2	8808	genome.wustl.edu	37	2	102818141	102818141	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003854.2	+1	reviewed	p.Q205	0.000	91	0%	163	37.4%	-	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
ZEB2	9839	genome.wustl.edu	37	2	145156892	145156892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014795.3	-1	reviewed	p.V621A	1.000	185	0%	212	31.6%	-	-	benign(0)	tolerated(0.9)	-	NULL
MMADHC	27249	genome.wustl.edu	37	2	150427601	150427601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015702.2	-1	reviewed	p.A232T	1.000	146	0%	117	35%	-	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	HMMPfam_DUF2246
NEB	4703	genome.wustl.edu	37	2	152553250	152553250	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004543.4	-1	reviewed	e15-1	1.000	72	0%	73	38.4%	-	-	-	-	-	-
PPIG	9360	genome.wustl.edu	37	2	170489738	170489738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004792.2	+1	validated	p.I333N	1.000	114	0%	157	39.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175436546	175436546	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001077269.1	-1	reviewed	p.D329	0.213	47	0%	59	44.1%	-	-	-	-	-	NULL
WIPF1	7456	genome.wustl.edu	37	2	175437120	175437120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001077269.1	-1	reviewed	p.A138V	1.000	85	1.2%	119	41.2%	-	-	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	NULL
TTN	7273	genome.wustl.edu	37	2	179437432	179437432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000356127	-1	known	p.E21906G	1.000	76	0%	135	42.2%	-	-	benign(0.157)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179495593	179495593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000356127	-1	known	p.I12130V	1.000	100	0%	107	40.2%	-	-	benign(0.099)	-	-	HMMSmart_SM00409,HMMPfam_I-set
GULP1	51454	genome.wustl.edu	37	2	189452585	189452585	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016315.2	+1	validated	p.D252fs	1.000	-	-	-	-	-	-	-	-	-	NULL
MYO1B	4430	genome.wustl.edu	37	2	192252032	192252032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130158.1	+1	validated	p.S546N	0.957	155	0%	228	31.1%	-	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD44	91526	genome.wustl.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	TG	-	rs139294990	byCluster;by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000409153	-1	known	p.H565fs	0.001:0.002	-	-	-	-	-	-	-	-	-	superfamily_ANK
RAPH1	65059	genome.wustl.edu	37	2	204360027	204360027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_213589.1	-1	validated	p.S17N	1.000	161	0%	228	39%	-	-	possibly_damaging(0.621)	deleterious(0)	deleterious(0.661)	NULL
MDH1B	130752	genome.wustl.edu	37	2	207619760	207619760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001039845.1	-1	validated	p.A295T	1.000	159	1.3%	207	35.7%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_LDH C-terminal domain-like
MAP2	4133	genome.wustl.edu	37	2	210594949	210594949	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002374.3	+1	reviewed	p.R1771fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ACADL	33	genome.wustl.edu	37	2	211070473	211070473	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001608.3	-1	reviewed	p.A217	0.002	100	0%	121	40.5%	-	-	-	-	-	HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
OBSL1	23363	genome.wustl.edu	37	2	220421220	220421221	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015311.2	-1	reviewed	p.L1431fs	0.879:0.910	-	-	-	-	-	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
STK11IP	114790	genome.wustl.edu	37	2	220472960	220472960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000456909	+1	known	p.P471S	0.000	6	0.000	28	0.250	-	-	benign(0.077)	tolerated(0.85)	neutral(0.006)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230668714	230668714	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004238.1	-1	provisional	e17+1	1.000	150	0%	94	39.4%	-	-	-	-	-	-
SP140	11262	genome.wustl.edu	37	2	231112670	231112670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007237.4	+1	validated	p.Y261C	0.001	316	0%	606	37.6%	-	-	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	NULL
SP140	11262	genome.wustl.edu	37	2	231155185	231155185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007237.4	+1	validated	p.K577N	0.001	110	0%	110	32.7%	-	-	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	superfamily_SAND domain-like
SP140	11262	genome.wustl.edu	37	2	231157468	231157468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007237.4	+1	validated	p.R645C	0.100	101	0%	132	44.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SAND,HMMSmart_SM00258,superfamily_SAND domain-like
ARMC9	80210	genome.wustl.edu	37	2	232104682	232104682	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_025139.3	+1	validated	p.V269	0.992	51	0%	62	30.6%	-	-	-	-	-	superfamily_ARM-type_fold
ATG16L1	55054	genome.wustl.edu	37	2	234164786	234164786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030803.6	+1	validated	p.L52V	1.000	93	0%	113	44.2%	-	-	possibly_damaging(0.875)	tolerated(0.12)	deleterious(0.601)	HMMPfam_ATG16
CHL1	10752	genome.wustl.edu	37	3	440828	440828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006614.2	+1	reviewed	p.S1128A	1.000	146	0%	158	42.4%	-	-	benign(0.247)	tolerated(0.28)	neutral(0.057)	NULL
TTLL3	26140	genome.wustl.edu	37	3	9874862	9874862	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001025930.2	+1	provisional	p.A543	0.000	43	0%	70	22.9%	-	-	-	-	-	NULL
TATDN2	9797	genome.wustl.edu	37	3	10290985	10290985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014760.3	+1	validated	p.P34H	0.993	40	0%	86	38.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NR1D2	9975	genome.wustl.edu	37	3	24003722	24003722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005126.4	+1	reviewed	p.T258S	1.000	103	0%	196	43.9%	-	-	benign(0.007)	tolerated(0.51)	neutral(0.009)	superfamily_Str_ncl_receptor
PLCD1	5333	genome.wustl.edu	37	3	38049030	38049030	+	RNA	DEL	G	G	-	rs143450039		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NR_024071.1	-1	validated	NULL	0.000	-	-	-	-	-	-	-	-	-	-
XIRP1	165904	genome.wustl.edu	37	3	39230013	39230013	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_194293.2	-1	provisional	p.R308	0.998	70	0%	118	50%	-	-	-	-	-	HMMPfam_Xin
EXOSC7	23016	genome.wustl.edu	37	3	45048983	45048983	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015004.3	+1	validated	p.S229	0.000	21	0%	22	27.3%	-	-	-	-	-	HMMPfam_RNase_PH_C
FYCO1	79443	genome.wustl.edu	37	3	46008751	46008751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024513.2	-1	validated	p.K692R	0.687	98	0%	145	38.6%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	superfamily_Prefoldin
PLXNB1	5364	genome.wustl.edu	37	3	48465780	48465780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130082.1	-1	validated	p.P81S	1.000	8	0.000	9	0.556	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
NCKIPSD	51517	genome.wustl.edu	37	3	48718763	48718763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016453.2	-1	reviewed	p.S350L	0.616	32	0%	49	53.1%	-	-	possibly_damaging(0.799)	tolerated(0.31)	neutral(0.328)	NULL
CAMKV	79012	genome.wustl.edu	37	3	49898210	49898210	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024046.3	-1	validated	p.R238	0.999	78	0%	155	42.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
VPRBP	9730	genome.wustl.edu	37	3	51440668	51440668	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014703.2	-1	validated	p.D1405	0.726	41	0%	102	42.2%	-	-	-	-	-	NULL
GNL3	26354	genome.wustl.edu	37	3	52727037	52727037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014366.4	+1	validated	p.I340S	1.000	48	0%	95	40%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
FOXP1	27086	genome.wustl.edu	37	3	71247152	71247152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001012505.1	-1	reviewed	p.P83H	0.000	99	0%	85	35.3%	-	-	unknown(0)	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107463526	107463526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001142568.1	+1	validated	p.R240P	1.000	195	0%	198	30.8%	-	-	benign(0.075)	deleterious(0)	neutral(0.450)	HMMPfam_DUF2028
ARHGAP31	57514	genome.wustl.edu	37	3	119134301	119134301	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020754.2	+1	reviewed	p.R1175	1.000	248	0%	275	45.1%	-	-	-	-	-	NULL
TMEM108	66000	genome.wustl.edu	37	3	133099122	133099122	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001136469.1	+1	validated	p.G189	0.093	72	0%	59	27.1%	-	-	-	-	-	NULL
TMEM108	66000	genome.wustl.edu	37	3	133114762	133114762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001136469.1	+1	validated	p.M554V	1.000	42	0%	74	31.1%	-	-	benign(0.087)	tolerated(0.28)	neutral(0.038)	NULL
IL20RB	53833	genome.wustl.edu	37	3	136699214	136699214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000491483	+1	known	p.A50T	0.005	73	0%	86	37.2%	-	-	unknown(0)	-	-	NULL
GPR149	344758	genome.wustl.edu	37	3	154146521	154146521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001038705.1	-1	provisional	p.T295I	0.000	115	0%	111	29.7%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
MECOM	2122	genome.wustl.edu	37	3	168838908	168838908	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000494292	-1	known	p.T356	0.055	36	0%	56	32.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LRRC34	151827	genome.wustl.edu	37	3	169521850	169521850	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_153353.4	-1	validated	p.D203	1.000	106	0%	102	41.2%	-	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
ECE2	9718	genome.wustl.edu	37	3	184008832	184008832	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014693.3	+1	validated	p.R731	0.268	43	0%	123	37.4%	-	-	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
EIF4G1	1981	genome.wustl.edu	37	3	184038752	184038752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_182917.3	+1	reviewed	p.T223M	0.990	5	0.000	26	0.269	-	-	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	NULL
GAK	2580	genome.wustl.edu	37	4	876539	876540	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005255.2	-1	validated	p.N491fs	0.993:0.996	-	-	-	-	-	-	-	-	-	superfamily_SSF52799
SH3TC1	54436	genome.wustl.edu	37	4	8242550	8242550	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018986.3	+1	validated	p.D1293	1.000	25	0%	48	35.4%	-	-	-	-	-	superfamily_TPR-like
SLC2A9	56606	genome.wustl.edu	37	4	9836518	9836518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020041.2	-1	reviewed	p.F469S	1.000	75	0%	145	37.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
AMBN	258	genome.wustl.edu	37	4	71472182	71472182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016519.4	+1	reviewed	p.D360G	0.000	66	0%	119	37%	-	-	benign(0.013)	deleterious(0.04)	neutral(0.349)	HMMPfam_Amelin,HMMSmart_SM00817
NPFFR2	10886	genome.wustl.edu	37	4	73013164	73013164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004885.2	+1	reviewed	p.A402T	0.999	177	0%	193	39.4%	-	-	benign(0.011)	tolerated(0.22)	neutral(0.043)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
G3BP2	9908	genome.wustl.edu	37	4	76572336	76572336	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012297.4	-1	validated	p.G312*	1.000	126	0%	138	38.4%	-	-	-	-	-	superfamily_RNA-binding domain RBD
PPM1K	152926	genome.wustl.edu	37	4	89183813	89183813	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152542.3	-1	validated	p.K351	0.995	77	0%	94	41.5%	-	-	-	-	-	superfamily_Protein serine/threonine phosphatase 2C catalytic domain
NAP1L5	266812	genome.wustl.edu	37	4	89618444	89618444	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_153757.2	-1	validated	p.E154D	0.050	158	0%	154	41.6%	-	-	unknown(0)	tolerated(0.29)	-	HMMPfam_NAP
FAM13A	10144	genome.wustl.edu	37	4	89950786	89950786	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014883.2	-1	validated	p.A14	0.001	155	0%	187	40.1%	-	-	-	-	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104062257	104062257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001813.2	-1	validated	p.Q1823R	1.000	74	0%	77	48.1%	-	-	possibly_damaging(0.891)	tolerated(0.05)	deleterious(0.696)	NULL
SEC24B	10427	genome.wustl.edu	37	4	110384670	110384670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006323.2	+1	reviewed	p.H249Q	0.048	179	0%	291	38.8%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ANK2	287	genome.wustl.edu	37	4	114302675	114302675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000446324	+1	known	p.R144H	0.922	58	0%	84	42.9%	-	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
LARP1B	55132	genome.wustl.edu	37	4	129019450	129019450	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018078.2	+1	reviewed	p.Q260*	1.000	74	0%	101	37.6%	-	-	-	-	-	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
GAB1	2549	genome.wustl.edu	37	4	144359329	144359329	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_207123.2	+1	reviewed	p.S257	1.000	209	0%	263	17.9%	-	-	-	-	-	NULL
GUCY1A3	2982	genome.wustl.edu	37	4	156618077	156618077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000856.4	+1	validated	p.L20V	0.998	76	0%	121	38.8%	-	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	NULL
TKTL2	84076	genome.wustl.edu	37	4	164394296	164394296	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032136.4	-1	validated	p.E197	1.000	96	0%	141	41.8%	-	-	-	-	-	HMMPfam_Transketolase_N,superfamily_SSF52518
TRAPPC11	60684	genome.wustl.edu	37	4	184615812	184615813	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021942.4	+1	validated	p.Y856fs	1.000:0.866	-	-	-	-	-	-	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187521413	187521413	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005245.3	-1	reviewed	p.V3914	1.000	80	0%	131	48.1%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT1	2195	genome.wustl.edu	37	4	187540627	187540627	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005245.3	-1	reviewed	p.S2371	1.000	162	0%	164	39.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
MYO10	4651	genome.wustl.edu	37	5	16674998	16674998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012334.2	-1	validated	p.R1643Q	0.998	137	0%	198	34.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MyTH4,HMMSmart_MyTH4
DHX29	54505	genome.wustl.edu	37	5	54589922	54589922	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_019030.2	-1	validated	p.R235*	0.736	130	0%	112	36.6%	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591105	67591106	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_181523.1	+1	reviewed	p.P567fs	0.993:1.000	-	-	-	-	-	-	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109117133	109117133	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002372.2	+1	reviewed	p.L471	0.006	88	0%	78	42.3%	-	-	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
MEGF10	84466	genome.wustl.edu	37	5	126732356	126732356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032446.2	+1	validated	p.C182S	1.000	83	0%	136	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_2,superfamily_EGF/Laminin
IRF1	3659	genome.wustl.edu	37	5	131822682	131822682	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002198.2	-1	reviewed	p.R110	0.997	63	0%	85	41.2%	-	-	-	-	-	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
AFF4	27125	genome.wustl.edu	37	5	132232736	132232736	+	Missense_Mutation	SNP	G	G	T	rs188073736	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014423.3	-1	validated	p.P529Q	1.000	129	0%	263	39.9%	-	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_AF-4
C5orf15	56951	genome.wustl.edu	37	5	133295360	133295362	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	TCG	TCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020199.2	-1	validated	p.D163in_frame_del	0.017:0.007:0.000	-	-	-	-	-	-	-	-	-	NULL
TRPC7	57113	genome.wustl.edu	37	5	135692393	135692393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000513104	-1	known	p.A228V	1.000	26	0%	45	33.3%	-	-	benign(0.023)	deleterious(0)	neutral(0.446)	HMMPfam_TRP_2
CDC25C	995	genome.wustl.edu	37	5	137666772	137666772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001790.3	-1	reviewed	p.L33P	0.996	66	0%	116	31%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PCDHGB7	56099	genome.wustl.edu	37	5	140797511	140797511	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018927.2	+1	reviewed	p.L29	0.940	21	0%	23	39.1%	-	-	-	-	-	superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140812236	140812236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003735.2	+1	reviewed	p.A637V	0.527	80	0%	113	40.7%	-	-	benign(0.044)	deleterious(0.05)	neutral(0.348)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HTR4	3360	genome.wustl.edu	37	5	147902903	147902903	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001040173.2	-1	reviewed	p.Y120	1.000	102	1%	150	38.7%	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
HAND1	9421	genome.wustl.edu	37	5	153857214	153857214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004821.2	-1	reviewed	p.E119K	1.000	35	0%	51	27.5%	-	-	possibly_damaging(0.895)	tolerated(0.12)	deleterious(0.613)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
GABRG2	2566	genome.wustl.edu	37	5	161528292	161528292	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_198903.2	+1	reviewed	p.D200	1.000	107	0%	125	39.2%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL
FGF18	8817	genome.wustl.edu	37	5	170863109	170863109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003862.1	+1	reviewed	p.E28K	1.000	23	0%	61	45.9%	-	-	benign(0.271)	tolerated(0.28)	neutral(0.060)	superfamily_Cytok_IL1_like
NSD1	64324	genome.wustl.edu	37	5	176722277	176722277	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022455.4	+1	reviewed	p.L2636	0.988	75	0%	133	34.6%	-	-	-	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12120458	12120458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002114.2	+1	validated	p.R144C	0.012	218	0%	359	37.3%	-	-	benign(0.091)	tolerated(0.23)	neutral(0.048)	NULL
GFOD1	54438	genome.wustl.edu	37	6	13365212	13365212	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018988.2	-1	provisional	p.A312	0.019	22	0%	32	15.6%	-	-	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15513561	15513561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004973.2	+1	reviewed	p.A1120T	0.074	23	0%	12	58.3%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
ZNF311	282890	genome.wustl.edu	37	6	28963169	28963169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001010877.2	-1	provisional	p.S537N	0.046	118	0%	264	37.5%	-	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C6orf25	80739	genome.wustl.edu	37	6	31691696	31691696	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_138272.1	+1	reviewed	p.D114	0.000	272	0%	396	19.7%	-	-	-	-	-	NULL
ZBTB12	221527	genome.wustl.edu	37	6	31868978	31868978	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_181842.2	-1	validated	p.V35	1.000	15	0%	15	26.7%	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ITPR3	3710	genome.wustl.edu	37	6	33634929	33634929	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002224.2	+1	validated	p.P525	0.006	73	0%	146	41.8%	-	-	-	-	-	HMMPfam_RYDR_ITPR,superfamily_SSF100909
GRM4	2914	genome.wustl.edu	37	6	33996014	33996014	+	Missense_Mutation	SNP	G	G	A	rs145173138	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000841.1	-1	reviewed	p.R858C	1.000	20	0%	34	32.4%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38723760	38723760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001371.2	+1	validated	p.H257Y	1.000	102	0%	157	42%	-	-	benign(0.202)	deleterious(0.01)	neutral(0.425)	HMMPfam_DHC_N1
GUCA1A	2978	genome.wustl.edu	37	6	42146372	42146372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000372965	+1	known	p.T121M	0.000	75	0%	135	48.1%	-	-	benign(0.307)	deleterious(0)	deleterious(0.540)	superfamily_SSF47473
ELOVL5	60481	genome.wustl.edu	37	6	53133991	53133991	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021814.3	-1	provisional	p.N278	0.868	94	1.1%	153	44.4%	-	-	-	-	-	NULL
COL12A1	1303	genome.wustl.edu	37	6	75840656	75840656	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004370.5	-1	reviewed	p.R1993	0.990	195	0%	230	41.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IBTK	25998	genome.wustl.edu	37	6	82900917	82900917	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015525.2	-1	reviewed	p.G1150*	1.000	69	1.4%	37	43.2%	-	-	-	-	-	NULL
SNAP91	9892	genome.wustl.edu	37	6	84302217	84302217	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014841.2	-1	validated	p.S629	0.999	48	0%	35	40%	-	-	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90371201	90371201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014611.1	-1	provisional	p.D4888Y	0.977	131	0%	118	31.4%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
MDN1	23195	genome.wustl.edu	37	6	90382002	90382002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014611.1	-1	provisional	p.V4571M	0.992	140	0%	238	38.7%	-	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
MDN1	23195	genome.wustl.edu	37	6	90384204	90384204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014611.1	-1	provisional	p.R4289H	0.992	35	0%	61	47.5%	-	-	probably_damaging(0.988)	tolerated(0.36)	neutral(0.458)	NULL
GRIK2	2898	genome.wustl.edu	37	6	102376360	102376360	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021956.4	+1	reviewed	p.I646	1.000	145	0%	124	34.7%	-	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
HACE1	57531	genome.wustl.edu	37	6	105233198	105233198	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000369127	-1	known	p.S10	0.004	114	0%	116	27.6%	-	-	-	-	-	NULL
SOBP	55084	genome.wustl.edu	37	6	107955270	107955270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018013.3	+1	validated	p.R408C	1.000	40	0%	40	42.5%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TAAR5	9038	genome.wustl.edu	37	6	132910501	132910501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003967.2	-1	validated	p.L109M	0.061	81	0%	193	42.5%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
IFNGR1	3459	genome.wustl.edu	37	6	137519505	137519506	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000416.2	-1	reviewed	p.S378fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_IFNGR1
VTA1	51534	genome.wustl.edu	37	6	142539701	142539702	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016485.3	+1	provisional	p.L283fs	1.000:0.970	-	-	-	-	-	-	-	-	-	HMMPfam_DUF605
UTRN	7402	genome.wustl.edu	37	6	144808702	144808702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007124.2	+1	reviewed	p.R1281C	1.000	249	0.4%	229	41.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
PLEKHG1	57480	genome.wustl.edu	37	6	151152859	151152859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001029884.1	+1	provisional	p.R871M	0.031	93	0%	117	41.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FBXO5	26271	genome.wustl.edu	37	6	153294212	153294212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012177.3	-1	reviewed	p.Q293R	0.987	93	0%	119	38.7%	-	-	possibly_damaging(0.923)	tolerated(0.19)	neutral(0.422)	HMMPfam_F-box
SYNJ2	8871	genome.wustl.edu	37	6	158497778	158497778	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003898.3	+1	reviewed	p.L805	1.000	63	0%	156	43.6%	-	-	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
FNDC1	84624	genome.wustl.edu	37	6	159653070	159653070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032532.2	+1	validated	p.L509S	0.996	57	0%	77	42.9%	-	-	unknown(0)	tolerated(0.11)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159670116	159670116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032532.2	+1	validated	p.S1579L	0.004	24	0%	43	34.9%	-	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
PRKAR1B	5575	genome.wustl.edu	37	7	635869	635869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002735.2	-1	validated	p.G208C	1.000	35	0%	43	14%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding
SUN1	23353	genome.wustl.edu	37	7	909144	909144	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000433212	+1	known	p.R562C	0.076	63	0%	128	40.6%	-	-	-	-	-	HMMPfam_Sad1_UNC
MAD1L1	8379	genome.wustl.edu	37	7	1997345	1997345	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001013836.1	-1	reviewed	p.V505	0.106	22	0%	53	39.6%	-	-	-	-	-	HMMPfam_MAD
ZNF12	7559	genome.wustl.edu	37	7	6737008	6737008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000394917	-1	known	p.G66*	1.000	31	0%	67	44.8%	-	-	-	-	-	NULL
AGR2	10551	genome.wustl.edu	37	7	16834595	16834595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006408.3	-1	validated	p.R148H	0.998	42	0%	74	33.8%	-	-	possibly_damaging(0.441)	tolerated(0.33)	neutral(0.168)	superfamily_Thioredoxin-like
HOXA9	3205	genome.wustl.edu	37	7	27203353	27203353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152739.3	-1	reviewed	p.Y230H	1.000	72	0%	125	41.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HOXA10	3206	genome.wustl.edu	37	7	27213918	27213918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018951.3	-1	reviewed	p.A3V	1.000	10	0%	15	53.3%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PSMA2	5683	genome.wustl.edu	37	7	42962997	42962997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002787.4	-1	reviewed	p.R128H	1.000	66	0%	90	27.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
BLVRA	644	genome.wustl.edu	37	7	43846819	43846819	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000712.3	+1	validated	p.C292	0.407	112	0%	185	43.2%	-	-	-	-	-	NULL
OGDH	4967	genome.wustl.edu	37	7	44733446	44733446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002541.3	+1	reviewed	p.R453Q	1.000	19	0%	29	24.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
IKZF1	10320	genome.wustl.edu	37	7	50467993	50467993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000331340	+1	known	p.G410S	1.000	28	0%	48	29.2%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92938187	92938187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017667.2	+1	validated	p.S561R	1.000	127	0%	151	35.1%	-	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
GIGYF1	64599	genome.wustl.edu	37	7	100284442	100284442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022574.4	-1	validated	p.A175V	0.984	7	0.000	15	0.467	-	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106508876	106508876	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002649.2	+1	reviewed	p.F290	1.000	79	0%	114	37.7%	-	-	-	-	-	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
DOCK4	9732	genome.wustl.edu	37	7	111368391	111368391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014705.3	-1	reviewed	p.A1947G	1.000	18	0%	11	63.6%	-	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
C7orf58	79974	genome.wustl.edu	37	7	120906814	120906814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024913.4	+1	validated	p.Q862R	1.000	239	0%	376	37%	-	-	probably_damaging(0.975)	tolerated(0.08)	deleterious(0.717)	NULL
FAM180A	389558	genome.wustl.edu	37	7	135418821	135418821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_205855.3	-1	validated	p.G142S	0.370	58	0%	78	42.3%	-	-	probably_damaging(0.999)	tolerated(0.5)	deleterious(0.500)	NULL
DGKI	9162	genome.wustl.edu	37	7	137206689	137206689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004717.2	-1	reviewed	p.L724P	1.000	78	0%	69	27.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRBV28	28559	genome.wustl.edu	37	7	142428778	142428778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000390400	+1	known	p.M46I	0.000	69	0%	92	47.8%	-	-	possibly_damaging(0.897)	tolerated(0.3)	neutral(0.383)	HMMPfam_V-set,superfamily_SSF48726
HTR5A	3361	genome.wustl.edu	37	7	154875967	154875967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024012.2	+1	reviewed	p.R282W	0.645	82	0%	144	38.9%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CSMD1	64478	genome.wustl.edu	37	8	3045398	3045398	+	Silent	SNP	G	G	A	rs186294991	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033225.5	-1	validated	p.S1872	0.327	55	0%	70	44.3%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MTMR9	66036	genome.wustl.edu	37	8	11152732	11152732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015458.3	+1	reviewed	p.I71T	1.000	187	0%	261	40.6%	-	-	benign(0.127)	deleterious(0)	neutral(0.455)	superfamily_SSF50729
TNFRSF10B	8795	genome.wustl.edu	37	8	22926262	22926262	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003842.4	-1	reviewed	e1+2	0.362	8	0.000	9	0.667	-	-	-	-	-	-
KIF13B	23303	genome.wustl.edu	37	8	28997674	28997674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015254.3	-1	validated	p.L840R	0.991	46	0%	82	26.8%	-	-	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	NULL
KCNU1	157855	genome.wustl.edu	37	8	36793300	36793300	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001031836.2	+1	validated	p.Q1104	0.001	386	0%	556	37.4%	-	-	-	-	-	NULL
NPBWR1	2831	genome.wustl.edu	37	8	53852602	53852602	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005285.3	+1	validated	p.A45	0.910	9	0.000	33	0.455	-	-	-	-	-	superfamily_SSF81321
NSMAF	8439	genome.wustl.edu	37	8	59502600	59502600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001144772.1	-1	reviewed	p.A716T	1.000	86	0%	73	32.9%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CHD7	55636	genome.wustl.edu	37	8	61655146	61655146	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017780.2	+1	reviewed	p.Q385	1.000	177	0%	272	36.8%	-	-	-	-	-	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92346618	92346618	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_134266.1	+1	reviewed	p.E246	0.999	93	0%	123	43.1%	-	-	-	-	-	HMMPfam_Sulfate_transp
KIAA1429	25962	genome.wustl.edu	37	8	95538595	95538595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015496.3	-1	validated	p.R626M	1.000	193	0%	232	47.4%	-	-	possibly_damaging(0.688)	tolerated(0.06)	deleterious(0.569)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113649179	113649179	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_198123.1	-1	validated	p.I1194	0.985	153	0%	172	39%	-	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZFAT	57623	genome.wustl.edu	37	8	135614578	135614578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020863.3	-1	reviewed	p.V462I	0.002	32	0%	37	54.1%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
COL22A1	169044	genome.wustl.edu	37	8	139603667	139603667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152888.1	-1	validated	p.G1565S	1.000	35	0%	36	33.3%	-	-	unknown(0)	deleterious(0)	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139788227	139788227	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152888.1	-1	validated	p.K595	0.876	72	0%	135	40.7%	-	-	-	-	-	HMMPfam_Collagen
FLJ43860	389690	genome.wustl.edu	37	8	142446818	142446818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_207414.2	-1	validated	p.V1123I	0.001	4	0.000	7	0.714	-	-	benign(0.01)	tolerated(1)	neutral(0.001)	superfamily_ARM repeat
ZNF7	7553	genome.wustl.edu	37	8	146067086	146067086	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003416.2	+1	validated	p.C198	0.008	51	0%	115	35.7%	-	-	-	-	-	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2161869	2161869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003070.3	+1	reviewed	p.A1389T	1.000	151	0%	200	31.5%	-	-	benign(0.218)	tolerated(0.14)	neutral(0.271)	HMMSmart_SM00297,superfamily_Bromodomain
KCNV2	169522	genome.wustl.edu	37	9	2718861	2718861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_133497.2	+1	reviewed	p.Q374H	1.000	46	0%	66	33.3%	-	-	possibly_damaging(0.602)	deleterious(0.05)	deleterious(0.554)	HMMPfam_Ion_trans,superfamily_SSF81324
FREM1	158326	genome.wustl.edu	37	9	14789027	14789028	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_144966.5	-1	reviewed	p.T1356fs	0.995:1.000	-	-	-	-	-	-	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16419575	16419575	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017637.5	-1	validated	p.S904	0.959	121	0%	155	38.1%	-	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17484476	17484476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017738.2	+1	validated	p.V1347M	0.272	221	0%	228	35.5%	-	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18777867	18777867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001040272.4	+1	validated	p.W1214R	1.000	37	0%	80	11.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PLIN2	123	genome.wustl.edu	37	9	19123621	19123621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001122.2	-1	reviewed	p.C84Y	1.000	48	0%	55	41.8%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Perilipin
DCAF10	79269	genome.wustl.edu	37	9	37819291	37819291	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024345.3	+1	validated	p.V182	1.000	57	0%	77	36.4%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
ANKRD18A	253650	genome.wustl.edu	37	9	38615928	38615928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000399703	-1	known	p.K107R	1.000	13	0%	18	22.2%	-	-	benign(0.043)	deleterious(0.03)	neutral(0.367)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
AGTPBP1	23287	genome.wustl.edu	37	9	88248206	88248206	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015239.2	-1	validated	p.G422	0.992	157	0%	140	19.3%	-	-	-	-	-	NULL
FGD3	89846	genome.wustl.edu	37	9	95768397	95768397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001083536.1	+1	validated	p.V258I	0.049	76	0%	80	42.5%	-	-	benign(0.348)	tolerated(0.12)	neutral(0.370)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TEX10	54881	genome.wustl.edu	37	9	103090123	103090123	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017746.3	-1	validated	p.R583*	1.000	166	0%	158	42.4%	-	-	-	-	-	NULL
RAD23B	5887	genome.wustl.edu	37	9	110091855	110091855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002874.3	+1	reviewed	p.V383A	1.000	150	0%	171	38%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165
IKBKAP	8518	genome.wustl.edu	37	9	111662117	111662117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003640.3	-1	reviewed	p.R730Q	1.000	298	0%	259	38.2%	-	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_IKI3
GSN	2934	genome.wustl.edu	37	9	124076302	124076302	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000177.4	+1	reviewed	e6+1	1.000	20	0%	60	35%	-	-	-	-	-	-
RABGAP1	23637	genome.wustl.edu	37	9	125827753	125827755	+	In_Frame_Del	DEL	AAA	AAA	-	rs3214358		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000447652	+1	known	p.K576in_frame_del	0.000:0.000:0.013	-	-	-	-	-	-	-	-	-	NULL
MAPKAP1	79109	genome.wustl.edu	37	9	128432165	128432165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001006617.1	-1	reviewed	p.R94Q	1.000	114	0%	117	39.3%	-	-	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	HMMPfam_SIN1
DNM1	1759	genome.wustl.edu	37	9	131016984	131016984	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004408.2	+1	reviewed	p.F862	1.000	68	0%	88	29.5%	-	-	-	-	-	NULL
TOR1A	1861	genome.wustl.edu	37	9	132580832	132580832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000113.2	-1	reviewed	p.A239T	0.142	89	0%	178	35.4%	-	-	benign(0.009)	tolerated(0.69)	neutral(0.003)	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000248272	0	genome.wustl.edu	37	9	135896140	135896140	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000506798	-1	known	NULL	1.000	59	0%	95	30.5%	-	-	-	-	-	-
SDCCAG3	10807	genome.wustl.edu	37	9	139298625	139298625	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001039707.1	-1	validated	p.R364*	0.184	22	0%	36	22.2%	-	-	-	-	-	NULL
ITIH2	3698	genome.wustl.edu	37	10	7780691	7780691	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002216.2	+1	validated	p.E689*	0.008	77	0%	119	22.7%	-	-	-	-	-	NULL
VIM	7431	genome.wustl.edu	37	10	17277219	17277219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003380.3	+1	reviewed	p.E354K	1.000	74	0%	184	25.5%	-	-	benign(0.128)	deleterious(0)	neutral(0.455)	HMMPfam_Filament
PIP4K2A	5305	genome.wustl.edu	37	10	22880678	22880678	+	Silent	SNP	G	G	A	rs191394168	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005028.4	-1	reviewed	p.N124	0.808	47	0%	84	26.2%	-	-	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
KIAA1217	56243	genome.wustl.edu	37	10	24831623	24831623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_019590.3	+1	validated	p.N1179I	0.998	99	0%	247	23.9%	-	-	benign(0.132)	deleterious(0)	neutral(0.456)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50732498	50732498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000124.2	-1	reviewed	p.E326D	0.068	88	0%	151	24.5%	-	-	possibly_damaging(0.794)	deleterious(0.02)	deleterious(0.681)	NULL
NCOA4	8031	genome.wustl.edu	37	10	51585108	51585108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001145260.1	+1	reviewed	p.V419M	0.995	118	0%	222	24.3%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
SLC29A3	55315	genome.wustl.edu	37	10	73122144	73122144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000373189	+1	known	p.H403Y	1.000	82	0%	275	27.6%	-	-	probably_damaging(0.975)	tolerated(0.56)	neutral(0.423)	HMMPfam_Nucleoside_tran
MIR606	693191	genome.wustl.edu	37	10	77312274	77312274	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000384851	+1	known	NULL	0.002	26	0%	33	27.3%	-	-	-	-	-	-
SFTPA2	729238	genome.wustl.edu	37	10	81319105	81319105	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001098668.2	-1	reviewed	p.D45	1.000	126	0%	190	19.5%	-	-	-	-	-	HMMPfam_Collagen
LRIT1	26103	genome.wustl.edu	37	10	86001154	86001154	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015613.2	-1	validated	p.A14	0.010	29	0%	60	36.7%	-	-	-	-	-	NULL
RGR	5995	genome.wustl.edu	37	10	86012730	86012730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002921.3	+1	reviewed	p.G163V	1.000	111	0%	177	27.7%	-	-	probably_damaging(0.964)	tolerated(0.09)	deleterious(0.703)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LDB3	11155	genome.wustl.edu	37	10	88441288	88441288	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007078.2	+1	reviewed	p.R139	0.518	28	0%	47	23.4%	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692792	89692807	+	Frame_Shift_Del	DEL	CCATAACCCACCACAG	CCATAACCCACCACAG	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CCATAACCCACCACAG	CCATAACCCACCACAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000371953	+1	known	p.H93fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
O3FAR1	338557	genome.wustl.edu	37	10	95326931	95326931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_181745.2	+1	validated	p.R152W	0.189	13	0%	19	36.8%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PLCE1	51196	genome.wustl.edu	37	10	96005987	96005987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016341.3	+1	reviewed	p.A902V	0.105	91	0%	178	27.5%	-	-	possibly_damaging(0.825)	tolerated(0.09)	deleterious(0.609)	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99667875	99667875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018058.4	-1	validated	p.L249I	1.000	36	0%	83	32.5%	-	-	benign(0.101)	tolerated(0.87)	neutral(0.008)	superfamily_Integrin alpha N-terminal domain
LOXL4	84171	genome.wustl.edu	37	10	100012177	100012177	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032211.6	-1	reviewed	p.L628	0.998	45	0%	107	26.2%	-	-	-	-	-	HMMPfam_Lysyl_oxidase
PPRC1	23082	genome.wustl.edu	37	10	103900879	103900879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015062.3	+1	reviewed	p.P872S	0.003	67	0%	227	32.2%	-	-	benign(0.231)	deleterious(0.05)	neutral(0.368)	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104183303	104183303	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024040.2	-1	validated	p.I248	0.955	90	0%	475	27.6%	-	-	-	-	-	NULL
SLK	9748	genome.wustl.edu	37	10	105768001	105768001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014720.2	+1	provisional	p.R891C	1.000	253	0%	435	31.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
TDRD1	56165	genome.wustl.edu	37	10	115970387	115970387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_198795.1	+1	reviewed	p.V478I	0.000	84	0%	120	53.3%	-	-	possibly_damaging(0.7)	tolerated(0.36)	neutral(0.272)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	rs121913476		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022970.3	-1	reviewed	p.N550K	1.000	44	0%	112	85.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
IKZF5	64376	genome.wustl.edu	37	10	124753658	124753658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022466.5	-1	provisional	p.V300I	0.979	124	0.8%	300	27%	-	-	possibly_damaging(0.496)	tolerated(0.5)	neutral(0.176)	NULL
DPYSL4	10570	genome.wustl.edu	37	10	134006217	134006217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006426.2	+1	validated	p.G62S	1.000	16	0%	23	52.2%	-	-	benign(0.088)	deleterious(0.05)	neutral(0.352)	superfamily_Composite domain of metallo-dependent hydrolases
SCGB1C1	147199	genome.wustl.edu	37	11	193802	193802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_145651.2	+1	validated	p.T49I	0.998	15	0%	30	20%	-	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_Uteroglobin,superfamily_Secretoglobin
OR51G1	79324	genome.wustl.edu	37	11	4944961	4944961	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001005237.1	-1	provisional	p.F203L	0.589	94	0%	108	30.6%	-	-	benign(0.334)	tolerated(0.12)	neutral(0.365)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM5	85363	genome.wustl.edu	37	11	5686388	5686388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033034.2	-1	reviewed	p.G378D	0.000	312	0%	658	36.5%	-	-	probably_damaging(1)	tolerated(0.42)	deleterious(0.514)	HMMPfam_SPRY,HMMSmart_SM00449
OR56A3	390083	genome.wustl.edu	37	11	5969494	5969494	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001003443.2	+1	provisional	p.G306	0.001	121	0%	411	38.4%	-	-	-	-	-	superfamily_SSF81321
PDE3B	5140	genome.wustl.edu	37	11	14839826	14839826	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000922.3	+1	validated	p.T540	1.000	118	0%	98	41.8%	-	-	-	-	-	NULL
INSC	387755	genome.wustl.edu	37	11	15262064	15262064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001031853.3	+1	provisional	p.C536R	1.000	51	0%	90	30%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00185,superfamily_ARM repeat
PIK3C2A	5286	genome.wustl.edu	37	11	17111313	17111313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002645.2	-1	validated	p.Y1678C	1.000	185	0%	255	38.4%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
UEVLD	55293	genome.wustl.edu	37	11	18557990	18557992	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001040697.1	-1	validated	p.E362in_frame_del	0.025:0.030:0.369	-	-	-	-	-	-	-	-	-	superfamily_LDH C-terminal domain-like
LIN7C	55327	genome.wustl.edu	37	11	27520276	27520276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018362.3	-1	validated	p.R172*	0.982	149	0%	166	30.1%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DCDC5	100506627	genome.wustl.edu	37	11	30953328	30953328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_002343054.1	-1	model	p.R42W	0.010	88	0%	68	32.4%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
ATG13	9776	genome.wustl.edu	37	11	46666923	46666923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001142673.1	+1	validated	p.E35G	1.000	75	0%	107	38.3%	-	-	possibly_damaging(0.568)	deleterious(0)	deleterious(0.639)	HMMPfam_DUF2224
NDUFS3	4722	genome.wustl.edu	37	11	47603690	47603690	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004551.2	+1	reviewed	p.K144	1.000	25	0%	137	42.3%	-	-	-	-	-	HMMPfam_Complex1_30kDa
MS4A6E	245802	genome.wustl.edu	37	11	60105266	60105266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_139249.2	+1	reviewed	p.G67V	0.006	199	0%	225	39.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CD20
TMEM132A	54972	genome.wustl.edu	37	11	60695321	60695321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017870.3	+1	reviewed	p.C175Y	1.000	7	0.000	10	0.600	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DDB1	1642	genome.wustl.edu	37	11	61076507	61076507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001923.3	-1	validated	p.V870A	1.000	71	0%	174	40.2%	-	-	benign(0.019)	tolerated(0.14)	neutral(0.251)	HMMPfam_CPSF_A
EEF1G	1937	genome.wustl.edu	37	11	62334327	62334327	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001404.4	-1	reviewed	p.L270	0.718	54	0%	144	42.4%	-	-	-	-	-	NULL
BSCL2	26580	genome.wustl.edu	37	11	62460253	62460253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001122955.2	-1	reviewed	p.R216H	1.000	63	0%	165	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Seipin
TCIRG1	10312	genome.wustl.edu	37	11	67812508	67812508	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006019.2	+1	reviewed	p.T368	0.046	19	0%	12	41.7%	-	-	-	-	-	HMMPfam_V_ATPase_I
LOC100131539	100131539	genome.wustl.edu	37	11	71527678	71527678	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_001723234.2	-1	model	p.S261	1.000	186	0%	484	40.5%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
INPPL1	3636	genome.wustl.edu	37	11	71941405	71941405	+	Splice_Site	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001567.3	+1	reviewed	e10-1	1.000	12	0%	25	36%	-	-	-	-	-	-
RELT	84957	genome.wustl.edu	37	11	73106160	73106160	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032871.3	+1	reviewed	p.R359	0.998	31	0%	33	36.4%	-	-	-	-	-	NULL
GDPD5	81544	genome.wustl.edu	37	11	75152264	75152264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030792.6	-1	validated	p.V473I	0.998	9	0.000	32	0.375	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CAPN5	726	genome.wustl.edu	37	11	76831935	76831935	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004055.4	+1	reviewed	p.T489	0.273	63	0%	105	39%	-	-	-	-	-	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB
TMEM135	65084	genome.wustl.edu	37	11	86749187	86749187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022918.3	+1	validated	p.A34T	1.000	51	0%	59	47.5%	-	-	possibly_damaging(0.605)	tolerated(0.07)	deleterious(0.528)	NULL
KBTBD3	143879	genome.wustl.edu	37	11	105924443	105924443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152433.3	-1	validated	p.P325S	0.959	110	0%	137	38.7%	-	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_Galactose oxidase central domain
CUL5	8065	genome.wustl.edu	37	11	107943190	107943191	+	Splice_Site	INS	-	-	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003478.3	+1	validated	e9+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
DIXDC1	85458	genome.wustl.edu	37	11	111866847	111866847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000440460	+1	known	p.R577L	1.000	57	0%	72	36.1%	-	-	possibly_damaging(0.589)	deleterious(0.01)	deleterious(0.609)	NULL
SIK3	23387	genome.wustl.edu	37	11	116717201	116717201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_025164.3	-1	validated	p.S1235P	1.000	99	0%	192	38.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117342724	117342724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020693.2	-1	provisional	p.R998H	0.991	90	0%	149	36.2%	-	-	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TMEM25	84866	genome.wustl.edu	37	11	118403101	118403101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032780.3	+1	validated	p.H103Y	1.000	42	0%	93	14%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
CXCR5	643	genome.wustl.edu	37	11	118764728	118764728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032966.1	+1	reviewed	p.R114C	1.000	43	0%	75	45.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_7tm_1,superfamily_SSF81321
C11orf63	79864	genome.wustl.edu	37	11	122774730	122774730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024806.2	+1	validated	p.P148S	0.004	98	0%	223	43.9%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
OR10G7	390265	genome.wustl.edu	37	11	123909032	123909032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001004463.1	-1	provisional	p.R226Q	0.057	185	0%	234	42.3%	-	-	benign(0.012)	tolerated(0.09)	neutral(0.297)	HMMPfam_7tm_1,superfamily_SSF81321
ROBO4	54538	genome.wustl.edu	37	11	124764160	124764160	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_019055.5	-1	validated	p.Q419*	1.000	32	0%	53	45.3%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DCPS	28960	genome.wustl.edu	37	11	126174172	126174172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014026.3	+1	validated	p.G66E	1.000	23	0%	79	35.4%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DcpS,superfamily_Scavenger_mRNA_decap_enz_N
CACNA1C	775	genome.wustl.edu	37	12	2705142	2705142	+	Silent	SNP	G	G	T	rs184684058	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_199460.2	+1	reviewed	p.P922	0.008	62	0%	144	34.7%	-	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNA5	3741	genome.wustl.edu	37	12	5153841	5153843	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CTA	CTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002234.2	+1	reviewed	p.Y179in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
VWF	7450	genome.wustl.edu	37	12	6080834	6080834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000552.3	-1	reviewed	p.R2493S	0.619	84	0%	155	36.8%	-	-	benign(0.133)	tolerated(0.23)	neutral(0.053)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
CLSTN3	9746	genome.wustl.edu	37	12	7301713	7301713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014718.3	+1	validated	p.P665T	1.000	71	0%	103	36.9%	-	-	benign(0.001)	tolerated(0.9)	-	NULL
PRB4	5545	genome.wustl.edu	37	12	11461656	11461656	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002723.3	-1	reviewed	p.N87	0.001	1875	0.1%	2397	10.9%	-	-	-	-	-	NULL
LRP6	4040	genome.wustl.edu	37	12	12274228	12274228	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002336.2	-1	reviewed	p.S1558	1.000	182	0%	203	40.4%	-	-	-	-	-	NULL
DENND5B	160518	genome.wustl.edu	37	12	31568374	31568374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_144973.3	-1	validated	p.G827R	1.000	24	0%	25	20%	-	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_RUN
SYT10	341359	genome.wustl.edu	37	12	33535358	33535358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_198992.2	-1	provisional	p.E432D	1.000	153	0%	216	42.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SLC2A13	114134	genome.wustl.edu	37	12	40345126	40345126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_052885.3	-1	validated	p.R323C	1.000	250	0%	180	37.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
IRAK4	51135	genome.wustl.edu	37	12	44166081	44166081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001114182.2	+1	reviewed	p.T136A	0.000	99	0%	173	35.8%	-	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
BIN2	51411	genome.wustl.edu	37	12	51685722	51685722	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016293.2	-1	validated	p.R390*	0.977	37	0%	56	35.7%	-	-	-	-	-	NULL
KRT85	3891	genome.wustl.edu	37	12	52757103	52757103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002283.3	-1	reviewed	p.A293V	0.998	91	0%	200	32%	-	-	benign(0.084)	deleterious(0.02)	neutral(0.389)	HMMPfam_Filament
AAAS	8086	genome.wustl.edu	37	12	53708533	53708533	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015665.5	-1	reviewed	e6+2	1.000	17	0%	35	42.9%	-	-	-	-	-	-
NCKAP1L	3071	genome.wustl.edu	37	12	54913006	54913006	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005337.4	+1	reviewed	p.L505	1.000	163	0%	310	47.4%	-	-	-	-	-	HMMPfam_Nckap1
DPY19L2	283417	genome.wustl.edu	37	12	63991612	63991612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_173812.4	-1	validated	p.E480K	0.973	218	0%	176	42%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF2211
OTOGL	283310	genome.wustl.edu	37	12	80648313	80648313	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000455751	+1	known	p.L151S	1.000	68	0%	46	32.6%	-	-	-	-	-	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94694765	94694765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005761.1	+1	provisional	p.G1440S	0.974	153	0%	254	41.7%	-	-	benign(0.197)	tolerated(0.49)	neutral(0.029)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
SLC5A8	160728	genome.wustl.edu	37	12	101552082	101552082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_145913.3	-1	validated	p.P552H	0.000	290	0%	218	42.2%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
UTP20	27340	genome.wustl.edu	37	12	101776909	101776909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014503.2	+1	validated	p.E2583K	0.791	169	0%	179	38%	-	-	benign(0.002)	tolerated(0.34)	neutral(0.023)	superfamily_ARM repeat
SYCP3	50511	genome.wustl.edu	37	12	102122918	102122918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_153694.4	-1	reviewed	p.A209D	0.982	118	0%	120	32.5%	-	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	HMMPfam_Cor1
PARPBP	55010	genome.wustl.edu	37	12	102547674	102547674	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017915.2	+1	predicted	p.K58fs	0.384	-	-	-	-	-	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104118825	104118825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017564.9	+1	reviewed	p.P1586S	0.084	415	0%	588	43.2%	-	-	benign(0)	tolerated(0.8)	neutral(0.001)	superfamily_BIgH3_FAS1,HMMSmart_EGF
OAS3	4940	genome.wustl.edu	37	12	113384555	113384555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006187.2	+1	reviewed	p.L215P	0.000	33	0%	47	36.2%	-	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
TAOK3	51347	genome.wustl.edu	37	12	118693338	118693338	+	Missense_Mutation	SNP	G	G	A	rs78662524	byCluster;byFrequency	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016281.3	-1	validated	p.A12V	1.000	167	0%	230	40.4%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
PXN	5829	genome.wustl.edu	37	12	120650354	120650354	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001080855.1	-1	validated	p.S513	1.000	21	0%	32	43.8%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
EP400	57634	genome.wustl.edu	37	12	132446454	132446454	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015409.3	+1	validated	p.E430	0.999	53	0%	94	47.9%	-	-	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133218842	133218842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006231.2	-1	validated	p.E1698D	1.000	33	0%	69	13%	-	-	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMPfam_DUF1744
TUBA3C	7278	genome.wustl.edu	37	13	19753563	19753563	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006001.1	-1	reviewed	p.S48	0.998	73	0%	114	36%	-	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
SHISA2	387914	genome.wustl.edu	37	13	26621051	26621051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001007538.1	-1	provisional	p.T163I	1.000	41	0%	45	35.6%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31713012	31713012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006644.2	-1	validated	p.R705Q	0.969	183	0%	179	40.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
NBEA	26960	genome.wustl.edu	37	13	36167570	36167570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015678.4	+1	validated	p.T2428A	1.000	160	0%	187	35.3%	-	-	benign(0.028)	deleterious(0.01)	neutral(0.407)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
DCLK1	9201	genome.wustl.edu	37	13	36384987	36384987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004734.3	-1	validated	p.I558T	1.000	285	0%	316	40.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
POSTN	10631	genome.wustl.edu	37	13	38158939	38158939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006475.2	-1	validated	p.N341S	1.000	69	0%	88	34.1%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
SLC25A15	10166	genome.wustl.edu	37	13	41379378	41379378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014252.3	+1	reviewed	p.A147T	0.083	72	0%	97	37.1%	-	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
NUFIP1	26747	genome.wustl.edu	37	13	45554910	45554910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012345.2	-1	validated	p.R181C	1.000	139	0%	146	43.2%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
NEK3	4752	genome.wustl.edu	37	13	52722555	52722555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000258597	-1	known	p.H200Y	1.000	313	0%	560	40.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TDRD3	81550	genome.wustl.edu	37	13	61102730	61102730	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030794.2	+1	validated	p.S364	1.000	143	0%	150	42%	-	-	-	-	-	NULL
DIS3	22894	genome.wustl.edu	37	13	73337628	73337628	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014953.3	-1	validated	p.P696	0.913	249	0%	197	36.5%	-	-	-	-	-	HMMPfam_RNB
EDNRB	1910	genome.wustl.edu	37	13	78475281	78475281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000115.2	-1	reviewed	p.I288T	1.000	152	0%	127	36.2%	-	-	benign(0.099)	deleterious(0.03)	neutral(0.372)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RBM26	64062	genome.wustl.edu	37	13	79952962	79952962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022118.3	-1	validated	p.A51V	1.000	70	0%	51	13.7%	-	-	unknown(0)	tolerated(0.05)	-	superfamily_SSF101233
EFS	10278	genome.wustl.edu	37	14	23829014	23829014	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005864.2	-1	reviewed	p.R225*	1.000	35	0%	49	40.8%	-	-	-	-	-	NULL
PRPF39	55015	genome.wustl.edu	37	14	45577689	45577689	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017922.3	+1	validated	p.E325	0.941	163	0%	157	31.8%	-	-	-	-	-	superfamily_TPR-like
SIX1	6495	genome.wustl.edu	37	14	61115717	61115717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005982.3	-1	reviewed	p.R64H	1.000	67	0%	99	43.4%	-	-	benign(0.308)	tolerated(0.15)	neutral(0.337)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64483196	64483196	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_182914.2	+1	reviewed	p.E1578	0.979	40	0%	16	56.2%	-	-	-	-	-	superfamily_Spectrin
LOC100287214	100287214	genome.wustl.edu	37	14	65008065	65008065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_002343281.1	-1	model	p.R377C	0.244	28	0%	43	27.9%	-	-	-	-	-	HMMPfam_NAD-GH
SPTB	6710	genome.wustl.edu	37	14	65216716	65216718	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001024858.2	-1	reviewed	p.K2253in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,HMMSmart_SPEC,superfamily_SSF50729
SLC39A9	55334	genome.wustl.edu	37	14	69866098	69866098	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018375.3	+1	validated	p.F4	0.997	48	0%	58	19%	-	-	-	-	-	HMMPfam_Zip
SAMD15	161394	genome.wustl.edu	37	14	77844063	77844063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001010860.1	+1	provisional	p.P101Q	0.336	354	0%	828	40.2%	-	-	probably_damaging(0.988)	tolerated(0.44)	neutral(0.450)	NULL
RPS6KA5	9252	genome.wustl.edu	37	14	91356847	91356847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004755.2	-1	validated	p.S607T	1.000	80	0%	100	31%	-	-	possibly_damaging(0.728)	deleterious(0.02)	deleterious(0.648)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CCNK	8812	genome.wustl.edu	37	14	99973474	99973474	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001099402.1	+1	reviewed	p.P370fs	1.000	-	-	-	-	-	-	-	-	-	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102500711	102500711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001376.4	+1	reviewed	p.R3559H	1.000	51	0%	73	37%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C15orf2	23742	genome.wustl.edu	37	15	24923810	24923810	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018958.2	+1	reviewed	p.S932	0.001	82	0%	108	40.7%	-	-	-	-	-	NULL
GABRA5	2558	genome.wustl.edu	37	15	27193366	27193366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000810.3	+1	reviewed	p.A459T	0.001	52	0%	81	46.9%	-	-	benign(0.004)	tolerated(1)	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33954455	33954455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001036.3	+1	validated	p.R1575H	1.000	14	0%	32	43.8%	-	-	probably_damaging(0.999)	-	-	NULL
PLCB2	5330	genome.wustl.edu	37	15	40591350	40591350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004573.2	-1	validated	p.I221T	1.000	28	0%	122	34.4%	-	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_efhand_like,superfamily_EF-hand
BAHD1	22893	genome.wustl.edu	37	15	40758262	40758262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014952.3	+1	validated	p.E759V	1.000	43	0%	52	30.8%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00439
NDUFAF1	51103	genome.wustl.edu	37	15	41687085	41687085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016013.2	-1	validated	p.R244H	1.000	44	0%	164	33.5%	-	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_CIA30
MYO5C	55930	genome.wustl.edu	37	15	52517648	52517648	+	Missense_Mutation	SNP	G	G	A	rs150088325	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018728.2	-1	validated	p.R1097W	1.000	143	0%	180	39.4%	-	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	NULL
ONECUT1	3175	genome.wustl.edu	37	15	53081129	53081129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004498.1	-1	provisional	p.R318M	1.000	36	0%	36	36.1%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_CUT
MYO1E	4643	genome.wustl.edu	37	15	59516939	59516939	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004998.2	-1	validated	p.G242	0.277	113	0%	174	39.7%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DPP8	54878	genome.wustl.edu	37	15	65792980	65792980	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_197960.2	-1	reviewed	p.I186	1.000	190	0%	307	43%	-	-	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
MYO9A	4649	genome.wustl.edu	37	15	72300274	72300274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006901.2	-1	validated	p.A425T	1.000	177	0.6%	217	41.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARIH1	25820	genome.wustl.edu	37	15	72853831	72853831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_005744.3	+1	validated	p.I249V	1.000	125	0%	67	40.3%	-	-	benign(0.006)	tolerated(0.64)	neutral(0.003)	superfamily_RING/U-box
ISLR2	57611	genome.wustl.edu	37	15	74425729	74425729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130136.1	+1	validated	p.A212T	1.000	54	0%	46	23.9%	-	-	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_LRRCT,HMMSmart_LRRCT,superfamily_SSF52058
SGK269	79834	genome.wustl.edu	37	15	77471276	77471276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024776.2	-1	validated	p.G998D	0.178	100	0%	160	41.9%	-	-	benign(0.218)	deleterious(0.01)	neutral(0.427)	NULL
TBC1D2B	23102	genome.wustl.edu	37	15	78317661	78317661	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000418039	-1	known	p.C224Y	0.989	127	0%	146	43.2%	-	-	-	-	-	NULL
ARNT2	9915	genome.wustl.edu	37	15	80872805	80872805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014862.3	+1	reviewed	p.T556M	0.267	51	0%	149	39.6%	-	-	possibly_damaging(0.86)	deleterious(0)	deleterious(0.777)	NULL
IL16	3603	genome.wustl.edu	37	15	81561924	81561924	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_172217.3	+1	reviewed	p.Q204*	0.899	128	0%	155	40%	-	-	-	-	-	superfamily_PDZ domain-like
ALPK3	57538	genome.wustl.edu	37	15	85400327	85400327	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_020778.4	+1	validated	p.H988	0.000	150	0%	119	35.3%	-	-	-	-	-	NULL
CRTC3	64784	genome.wustl.edu	37	15	91172638	91172638	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022769.3	+1	validated	p.S380	0.027	195	0%	377	38.7%	-	-	-	-	-	NULL
UNC45A	55898	genome.wustl.edu	37	15	91485935	91485935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000454296	+1	known	p.C319Y	0.000	6	0.000	42	0.452	-	-	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99673230	99673230	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_145728.2	+1	reviewed	p.M1555T	0.083	69	0%	109	36.7%	-	-	-	-	-	NULL
TELO2	9894	genome.wustl.edu	37	16	1544359	1544359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016111.3	+1	reviewed	p.G26D	0.000	39	0%	62	37.1%	-	-	benign(0.012)	tolerated(0.56)	neutral(0.007)	NULL
MYH11	4629	genome.wustl.edu	37	16	15818054	15818054	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001040114.1	-1	reviewed	p.V1450	1.000	71	0%	94	41.5%	-	-	-	-	-	HMMPfam_Myosin_tail_1
C16orf88	400506	genome.wustl.edu	37	16	19718307	19718307	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001012991.2	-1	provisional	p.L434	0.987	136	0%	159	42.1%	-	-	-	-	-	NULL
PDILT	204474	genome.wustl.edu	37	16	20380840	20380840	+	Missense_Mutation	SNP	G	G	A	rs191618493	by1000genomes	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_174924.1	-1	provisional	p.R364C	0.000	259	0%	371	39.1%	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_Thiordxn-like_fd
VWA3A	146177	genome.wustl.edu	37	16	22144393	22144393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_173615.3	+1	validated	p.R682H	1.000	38	0%	82	47.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
XPO6	23214	genome.wustl.edu	37	16	28124346	28124346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015171.2	-1	provisional	p.A677V	1.000	30	0%	44	34.1%	-	-	possibly_damaging(0.879)	deleterious(0.01)	deleterious(0.748)	superfamily_ARM repeat
MAPK3	5595	genome.wustl.edu	37	16	30133247	30133247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002746.2	-1	reviewed	p.R84H	1.000	19	0%	69	44.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ABCC11	85320	genome.wustl.edu	37	16	48210843	48210843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032583.3	-1	reviewed	p.T1177M	0.987	29	0%	46	34.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
MT1CP	441771	genome.wustl.edu	37	16	56683384	56683384	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000379816	+1	known	p.C39	0.017	76	0%	147	36.1%	-	-	-	-	-	HMMPfam_Metallothio,superfamily_Metallothionein
CETP	1071	genome.wustl.edu	37	16	57012039	57012039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000078.2	+1	reviewed	p.V340I	0.017	71	0%	78	41%	-	-	benign(0.31)	tolerated(0.21)	neutral(0.141)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
FHOD1	29109	genome.wustl.edu	37	16	67268325	67268325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_013241.2	-1	reviewed	p.A457V	0.896	10	0%	12	33.3%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
SLC9A5	6553	genome.wustl.edu	37	16	67293776	67293776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004594.2	+1	validated	p.R590H	1.000	8	0.000	30	0.233	-	-	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	NULL
CTCF	10664	genome.wustl.edu	37	16	67644949	67644949	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006565.2	+1	reviewed	p.Q72*	1.000	98	0%	180	40.6%	-	-	-	-	-	NULL
FUK	197258	genome.wustl.edu	37	16	70502792	70502792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_145059.2	+1	reviewed	p.R235H	0.988	32	0%	53	43.4%	-	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMPfam_Fucokinase
BCAR1	9564	genome.wustl.edu	37	16	75276447	75276447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014567.3	-1	validated	p.A185V	1.000	7	0.000	26	0.269	-	-	benign(0.025)	tolerated(0.54)	neutral(0.009)	NULL
WWOX	51741	genome.wustl.edu	37	16	78458938	78458938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000299644	+1	known	p.P87H	0.994	205	0%	316	39.9%	-	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
PLCG2	5336	genome.wustl.edu	37	16	81946260	81946260	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002661.2	+1	validated	p.R665	1.000	14	0%	22	50%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
VPS53	55275	genome.wustl.edu	37	17	440305	440305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001128159.1	-1	reviewed	p.R660C	0.993	65	0%	139	41.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYB5D2	124936	genome.wustl.edu	37	17	4046824	4046826	+	RNA	DEL	AAA	AAA	-	rs71383524	byCluster	TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NR_023346.1	+1	validated	NULL	0.028:0.028:0.027	-	-	-	-	-	-	-	-	-	-
GGT6	124975	genome.wustl.edu	37	17	4462857	4462858	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001122890.1	-1	validated	p.A114fs	0.915:0.991	-	-	-	-	-	-	-	-	-	NULL
NUP88	4927	genome.wustl.edu	37	17	5319923	5319923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002532.3	-1	reviewed	p.I126T	0.973	71	0%	52	42.3%	-	-	possibly_damaging(0.561)	tolerated(0.06)	deleterious(0.514)	HMMPfam_Nup88
NLRP1	22861	genome.wustl.edu	37	17	5425026	5425026	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033004.3	-1	reviewed	p.E1201*	0.953	81	0%	66	34.8%	-	-	-	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7809937	7809937	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001005271.2	+1	reviewed	p.A1534	0.343	145	0%	432	36.6%	-	-	-	-	-	HMMPfam_DUF1086
PFAS	5198	genome.wustl.edu	37	17	8166304	8166304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012393.2	+1	reviewed	p.S468Y	1.000	116	0%	151	40.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
DHRS7C	201140	genome.wustl.edu	37	17	9674948	9674948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001105571.1	-1	validated	p.V265M	0.974	19	0%	18	61.1%	-	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_NAD(P)-binding Rossmann-fold domains
MYH13	8735	genome.wustl.edu	37	17	10243693	10243693	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003802.2	-1	validated	p.G640	0.728	69	0%	148	34.5%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH3	4621	genome.wustl.edu	37	17	10533659	10533659	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002470.2	-1	reviewed	p.A1801	0.037	183	0%	254	35.8%	-	-	-	-	-	HMMPfam_Myosin_tail_1
NCOR1	9611	genome.wustl.edu	37	17	15965542	15965542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006311.2	-1	reviewed	p.R1755H	1.000	124	0%	281	43.4%	-	-	probably_damaging(1)	tolerated(0.73)	deleterious(0.501)	NULL
KSR1	8844	genome.wustl.edu	37	17	25937121	25937121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014238.1	+1	validated	p.D637N	1.000	64	1.6%	90	30%	-	-	benign(0.327)	tolerated(0.26)	neutral(0.137)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
NSRP1	84081	genome.wustl.edu	37	17	28506314	28506314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032141.2	+1	validated	p.E169D	1.000	68	0%	88	44.3%	-	-	probably_damaging(0.993)	tolerated(0.19)	deleterious(0.499)	HMMPfam_DUF2040
TMEM132E	124842	genome.wustl.edu	37	17	32959866	32959866	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_207313.1	+1	provisional	p.E452	1.000	135	0%	128	31.2%	-	-	-	-	-	NULL
STARD3	10948	genome.wustl.edu	37	17	37817122	37817122	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006804.3	+1	reviewed	p.A338	0.374	38	0%	54	37%	-	-	-	-	-	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
WNT3	7473	genome.wustl.edu	37	17	44846112	44846112	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030753.3	-1	reviewed	p.S214	1.000	18	0%	23	52.2%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1
HOXB3	3213	genome.wustl.edu	37	17	46629585	46629585	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002146.4	-1	reviewed	p.S84	0.358	29	0%	75	45.3%	-	-	-	-	-	NULL
B4GALNT2	124872	genome.wustl.edu	37	17	47243581	47243581	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_153446.2	+1	validated	p.L414	0.943	36	0%	63	36.5%	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
EME1	146956	genome.wustl.edu	37	17	48456503	48456503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152463.2	+1	reviewed	p.A383E	0.000	51	0%	106	37.7%	-	-	benign(0.086)	tolerated(0.52)	neutral(0.015)	HMMPfam_ERCC4
RNF43	54894	genome.wustl.edu	37	17	56448393	56448393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017763.4	-1	validated	p.S85F	1.000	56	0%	126	39.7%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
APPBP2	10513	genome.wustl.edu	37	17	58543807	58543807	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006380.2	-1	reviewed	p.R173*	0.998	93	0%	139	37.4%	-	-	-	-	-	superfamily_TPR-like
DCAF7	10238	genome.wustl.edu	37	17	61662602	61662602	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000310827	+1	known	p.C256	1.000	185	0%	234	35%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DDX42	11325	genome.wustl.edu	37	17	61895519	61895519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_007372.2	+1	reviewed	p.G860R	1.000	118	0%	271	35.8%	-	-	benign(0.085)	deleterious(0)	neutral(0.451)	NULL
TEX2	55852	genome.wustl.edu	37	17	62290718	62290718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018469.3	-1	validated	p.I287N	1.000	64	0%	104	45.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GNA13	10672	genome.wustl.edu	37	17	63010381	63010381	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006572.4	-1	validated	p.L376	0.326	84	0%	125	39.2%	-	-	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275
HELZ	9931	genome.wustl.edu	37	17	65103769	65103769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014877.3	-1	validated	p.R1586H	1.000	189	0%	243	41.6%	-	-	unknown(0)	tolerated(0.29)	-	NULL
MAP2K6	5608	genome.wustl.edu	37	17	67515538	67515538	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002758.3	+1	reviewed	p.F111I	0.992	131	0%	246	44.3%	-	-	benign(0.08)	deleterious(0.03)	neutral(0.370)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C17orf28	283987	genome.wustl.edu	37	17	72958421	72958421	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030630.2	-1	validated	p.D173	0.951	12	0%	15	40%	-	-	unknown(0)	-	-	HMMPfam_Hid1
EVPL	2125	genome.wustl.edu	37	17	74004955	74004955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001988.2	-1	validated	p.L1444S	0.084	100	0%	201	32.3%	-	-	benign(0.35)	tolerated(0.68)	neutral(0.113)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74276134	74276134	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032134.1	-1	provisional	p.D1410	0.789	9	0.000	22	0.364	-	-	-	-	-	NULL
SEPT9	10801	genome.wustl.edu	37	17	75488708	75488708	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001113491.1	+1	reviewed	p.T462	0.109	74	0%	109	33.9%	-	-	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
C17orf62	79415	genome.wustl.edu	37	17	80401790	80401790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000342572	-1	known	p.P74L	0.000	22	0%	34	26.5%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF750	79755	genome.wustl.edu	37	17	80789050	80789050	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024702.2	-1	reviewed	p.C427	0.000	69	0%	84	42.9%	-	-	-	-	-	NULL
ENSG00000173213	0	genome.wustl.edu	37	18	48973	48973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000308911	-1	known	p.G82R	1.000	62	1.6%	31	25.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
L3MBTL4	91133	genome.wustl.edu	37	18	6239789	6239789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_173464.3	-1	validated	p.A212V	1.000	168	0%	286	42.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MBT,HMMSmart_MBT,superfamily_SSF63748
RAB31	11031	genome.wustl.edu	37	18	9775346	9775346	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006868.3	+1	validated	p.P37	0.432	62	0%	87	44.8%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPIRE1	56907	genome.wustl.edu	37	18	12493161	12493161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001128626.1	-1	validated	p.R367W	1.000	112	0%	119	31.1%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
DSG1	1828	genome.wustl.edu	37	18	28923907	28923907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001942.2	+1	reviewed	p.P614S	0.096	136	0%	141	39.7%	-	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32834369	32834369	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000360932	-1	known	p.L115	0.000	82	0%	163	37.4%	-	-	-	-	-	NULL
ZNF532	55205	genome.wustl.edu	37	18	56585565	56585565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_018181.4	+1	validated	p.A16T	1.000	187	0%	318	42.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDH7	1005	genome.wustl.edu	37	18	63548090	63548090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004361.2	+1	reviewed	p.A773V	1.000	156	0%	168	35.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cadherin_C
PTPRS	5802	genome.wustl.edu	37	19	5245953	5245953	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002850.3	-1	reviewed	p.P274	0.056	9	0.000	26	0.308	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FBN3	84467	genome.wustl.edu	37	19	8159407	8159407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032447.3	-1	reviewed	p.G1943D	1.000	28	0%	76	48.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
ACTL9	284382	genome.wustl.edu	37	19	8808365	8808365	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_178525.3	-1	validated	p.T229	0.247	35	0%	63	34.9%	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MUC16	94025	genome.wustl.edu	37	19	9090749	9090749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024690.2	-1	validated	p.S356P	0.003	158	0%	272	37.9%	-	-	unknown(0)	-	-	NULL
ZNF266	10781	genome.wustl.edu	37	19	9524140	9524140	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006631.2	-1	validated	p.T487	1.000	117	0%	190	34.7%	-	-	-	-	-	superfamily_SSF57667
COL5A3	50509	genome.wustl.edu	37	19	10116374	10116374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015719.3	-1	reviewed	p.V152I	0.490	37	0%	75	40%	-	-	unknown(0)	tolerated(0.47)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10218210	10218210	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001040664.1	+1	validated	p.C73	0.708	42	0%	116	39.7%	-	-	-	-	-	HMMPfam_Brix
DNMT1	1786	genome.wustl.edu	37	19	10254615	10254615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130823.1	-1	reviewed	p.D981E	0.341	74	0%	118	40.7%	-	-	probably_damaging(0.97)	tolerated(0.12)	deleterious(0.673)	HMMSmart_SM00439
ZNF700	90592	genome.wustl.edu	37	19	12060678	12060678	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_144566.1	+1	provisional	p.T613	0.070	164	0%	354	33.9%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TNPO2	30000	genome.wustl.edu	37	19	12826484	12826484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001136196.1	-1	validated	p.C132Y	1.000	6	0.000	20	0.450	-	-	possibly_damaging(0.574)	tolerated(0.35)	neutral(0.217)	HMMPfam_HEAT,superfamily_ARM repeat
CCDC130	81576	genome.wustl.edu	37	19	13868259	13868259	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_030818.2	+1	provisional	p.C56	0.929	19	0%	61	37.7%	-	-	-	-	-	HMMPfam_DUF572
PRKACA	5566	genome.wustl.edu	37	19	14208459	14208459	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002730.3	-1	reviewed	p.V192fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SUGP2	10147	genome.wustl.edu	37	19	19112442	19112442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001017392.3	-1	reviewed	p.R991C	0.981	77	0%	146	45.9%	-	-	possibly_damaging(0.845)	tolerated(0.14)	deleterious(0.574)	NULL
ZNF14	7561	genome.wustl.edu	37	19	19822668	19822668	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021030.2	-1	reviewed	p.P474	0.717	173	0%	330	37%	-	-	-	-	-	superfamily_SSF57667
ZNF675	171392	genome.wustl.edu	37	19	23836381	23836381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_138330.2	-1	validated	p.Y452H	0.667	157	0%	218	33.9%	-	-	possibly_damaging(0.835)	deleterious(0.02)	deleterious(0.702)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RHPN2	85415	genome.wustl.edu	37	19	33481443	33481443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033103.4	-1	reviewed	p.L593F	1.000	27	0%	87	41.4%	-	-	possibly_damaging(0.664)	tolerated(0.17)	neutral(0.294)	HMMSmart_PDZ,superfamily_PDZ
NPHS1	4868	genome.wustl.edu	37	19	36339986	36339986	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004646.3	-1	reviewed	p.L302	0.233	34	0%	82	34.1%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
RYR1	6261	genome.wustl.edu	37	19	38957024	38957024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_000540.2	+1	reviewed	p.P1055H	1.000	13	0%	39	23.1%	-	-	probably_damaging(0.999)	-	-	HMMPfam_RyR
FCGBP	8857	genome.wustl.edu	37	19	40392668	40392668	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003890.2	-1	validated	p.N2612	0.002	30	0%	50	38%	-	-	-	-	-	NULL
ZNF574	64763	genome.wustl.edu	37	19	42583383	42583383	+	Missense_Mutation	SNP	G	G	A	rs111308949		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_022752.5	+1	validated	p.V209M	1.000	188	0%	288	42%	-	-	possibly_damaging(0.819)	tolerated(0.13)	deleterious(0.562)	superfamily_C2H2 and C2HC zinc fingers
ZNF155	7711	genome.wustl.edu	37	19	44501161	44501161	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003445.2	+1	validated	p.S384	0.000	339	0%	467	38.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GEMIN7	79760	genome.wustl.edu	37	19	45593596	45593596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001007269.1	+1	reviewed	p.G75D	0.997	25	0%	68	32.4%	-	-	probably_damaging(0.996)	tolerated(0.41)	deleterious(0.477)	NULL
VASP	7408	genome.wustl.edu	37	19	46021019	46021019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003370.3	+1	reviewed	p.R35H	0.997	23	0%	38	31.6%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_WH1,superfamily_SSF50729
ENSG00000171101	0	genome.wustl.edu	37	19	51671524	51671524	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000341811	+1	known	p.I175	0.002	49	0%	96	39.6%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
LOC388559	388559	genome.wustl.edu	37	19	53409851	53409851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_496322.5	-1	model	p.E557V	1.000	137	0%	239	36.4%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LENG1	79165	genome.wustl.edu	37	19	54662110	54662110	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_024316.1	-1	provisional	p.G74	1.000	95	0%	108	37%	-	-	-	-	-	NULL
LILRA5	353514	genome.wustl.edu	37	19	54818783	54818783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021250.2	-1	reviewed	p.A272V	0.043	61	0%	152	38.2%	-	-	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55450857	55450857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001127255.1	-1	reviewed	p.D444N	0.000	53	0%	105	27.6%	-	-	possibly_damaging(0.819)	tolerated(0.2)	neutral(0.358)	NULL
EPN1	29924	genome.wustl.edu	37	19	56206308	56206308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001130071.1	+1	validated	p.T580M	0.006	5	0.000	9	0.444	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
ZSCAN5B	342933	genome.wustl.edu	37	19	56701373	56701373	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001080456.2	-1	validated	p.R437	0.984	80	1.3%	228	40.8%	-	-	-	-	-	superfamily_SSF57667
ZNF416	55659	genome.wustl.edu	37	19	58084966	58084966	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017879.1	-1	provisional	p.K102	0.001	91	0%	225	42.2%	-	-	-	-	-	NULL
ZBTB45	84878	genome.wustl.edu	37	19	59028440	59028440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_032792.2	-1	provisional	p.A201T	0.000	36	0%	53	32.1%	-	-	benign(0.135)	tolerated(0.14)	neutral(0.261)	NULL
SMOX	54498	genome.wustl.edu	37	20	4163060	4163060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_175839.1	+1	reviewed	p.S312P	1.000	56	0%	76	11.8%	-	-	benign(0)	tolerated(0.97)	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
RBL1	5933	genome.wustl.edu	37	20	35632107	35632107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002895.2	-1	reviewed	p.K1012E	1.000	21	0%	24	33.3%	-	-	possibly_damaging(0.51)	deleterious(0.02)	deleterious(0.554)	NULL
DHX35	60625	genome.wustl.edu	37	20	37659376	37659376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_021931.2	+1	reviewed	p.I638T	1.000	100	0%	137	39.4%	-	-	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	HMMPfam_DUF1605
ZHX3	23051	genome.wustl.edu	37	20	39831165	39831165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_015035.3	-1	reviewed	p.M798V	0.802	144	0%	204	40.7%	-	-	benign(0)	tolerated(1)	-	HMMSmart_HOX,superfamily_Homeodomain_like
FAM209B	388799	genome.wustl.edu	37	20	55108531	55108531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001013646.2	+1	predicted	p.R45Q	0.221	93	0%	164	39%	-	-	benign(0.037)	deleterious(0)	neutral(0.447)	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45497658	45497658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003274.4	+1	reviewed	p.F488L	1.000	104	0%	115	33.9%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47664965	47664965	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_003906.3	-1	reviewed	p.G1598	0.425	68	0%	154	41.6%	-	-	-	-	-	NULL
USP18	11274	genome.wustl.edu	37	22	18640540	18640541	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017414.3	+1	validated	p.E39fs	0.997:0.997	-	-	-	-	-	-	-	-	-	NULL
PRODH	5625	genome.wustl.edu	37	22	18905900	18905900	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_016335.3	-1	reviewed	p.A452	0.187	12	0%	24	41.7%	-	-	-	-	-	HMMPfam_Pro_dh,superfamily_FAD-linked oxidoreductase
LOC100288476	100288476	genome.wustl.edu	37	22	31493236	31493247	+	In_Frame_Del	DEL	CCCTTCCCCTTT	CCCTTCCCCTTT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	CCCTTCCCCTTT	CCCTTCCCCTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_002343774.1	-1	model	p.KGKG285in_frame_del	0.002:0.007:0.013:0.018:0.013:0.000:0.000:0.000:0.000:0.000:0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
PATZ1	23598	genome.wustl.edu	37	22	31731705	31731705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014323.2	-1	reviewed	p.S494G	1.000	31	0%	42	35.7%	-	-	possibly_damaging(0.784)	deleterious(0.05)	deleterious(0.639)	superfamily_C2H2 and C2HC zinc fingers
APOBEC3D	140564	genome.wustl.edu	37	22	39421620	39421620	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_152426.3	+1	reviewed	p.W183*	0.773	150	0.7%	309	37.2%	-	-	-	-	-	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
SYNGR1	9145	genome.wustl.edu	37	22	39770533	39770533	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004711.4	+1	reviewed	p.A104	0.485	27	0%	63	23.8%	-	-	-	-	-	HMMPfam_MARVEL
TAB1	10454	genome.wustl.edu	37	22	39817891	39817891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_006116.2	+1	reviewed	p.D279G	0.992	80	0%	129	34.9%	-	-	benign(0.396)	tolerated(0.14)	neutral(0.377)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
EP300	2033	genome.wustl.edu	37	22	41572357	41572357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001429.3	+1	reviewed	p.A1629V	1.000	162	0%	283	39.6%	-	-	unknown(0)	deleterious(0)	-	NULL
KIAA1644	85352	genome.wustl.edu	37	22	44692669	44692669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000381176	-1	known	p.T55I	1.000	57	0%	79	48.1%	-	-	possibly_damaging(0.481)	deleterious(0.01)	deleterious(0.565)	NULL
FIGF	2277	genome.wustl.edu	37	X	15381342	15381342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004469.2	-1	reviewed	p.L64V	1.000	95	0%	122	43.4%	-	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20183054	20183054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_004586.2	-1	reviewed	p.M576T	1.000	184	0%	325	37.5%	-	-	possibly_damaging(0.738)	tolerated(0.08)	deleterious(0.570)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DDX3X	1654	genome.wustl.edu	37	X	41206690	41206690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001356.3	+1	reviewed	p.R632I	1.000	155	0%	176	36.4%	-	-	unknown(0)	tolerated(0.4)	-	NULL
KDM6A	7403	genome.wustl.edu	37	X	44929189	44929189	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	ENST00000433797	+1	known	p.P406S	1.000	105	0%	183	33.3%	-	-	-	-	-	NULL
SLC38A5	92745	genome.wustl.edu	37	X	48320424	48320424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033518.2	-1	validated	p.C247Y	1.000	42	0%	80	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aa_trans
PPP1R3F	89801	genome.wustl.edu	37	X	49143007	49143007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_033215.4	+1	reviewed	p.P619T	0.134	31	0%	59	40.7%	-	-	benign(0.344)	deleterious(0)	deleterious(0.553)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69607080	69607080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_012310.4	+1	reviewed	p.R722Q	0.352	32	0%	60	38.3%	-	-	possibly_damaging(0.778)	tolerated(0.13)	deleterious(0.543)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102004531	102004531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001142524.1	+1	validated	p.Y203C	0.976	565	0%	833	41.7%	-	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102005288	102005288	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001142524.1	+1	validated	p.S455	0.070	342	0%	413	37.3%	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
IL1RAPL2	26280	genome.wustl.edu	37	X	104984616	104984616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_017416.1	+1	reviewed	p.A327V	0.994	255	0%	450	40%	-	-	benign(0.397)	tolerated(0.33)	neutral(0.151)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CAPN6	827	genome.wustl.edu	37	X	110507063	110507063	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_014289.3	-1	reviewed	p.P34	0.995	182	0%	217	39.2%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
THOC2	57187	genome.wustl.edu	37	X	122760503	122760503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_001081550.1	-1	validated	p.K923R	1.000	252	0%	271	39.9%	-	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
RBMX	27316	genome.wustl.edu	37	X	135961586	135961588	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	NM_002139.3	-1	reviewed	p.MVEA1in_frame_delWLK	1.000	-	-	-	-	-	-	-	-	-	NULL
LOC100129236	100129236	genome.wustl.edu	37	X	150684442	150684442	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0LX-01A-11W-A062-09	TCGA-BG-A0LX-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f306ad14-2966-4347-809e-df1cecaeb634	ac1d0b04-170e-4ce7-ad5a-fbf45d0fb5e0	XM_001716550.1	+1	model	p.A84	0.000	24	0%	11	54.5%	-	-	-	-	-	NULL
