Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PRAMEF12	390999	genome.wustl.edu	37	1	12837211	12837211	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001080830.1	+1	provisional	p.S307	0.000	149	0%	122	41.8%	0	-	-	-	-	superfamily_SSF52047
IGSF21	84966	genome.wustl.edu	37	1	18554479	18554479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_032880.3	+1	validated	p.R53H	1.000	152	0%	107	43%	0	-	possibly_damaging(0.921)	deleterious(0.02)	deleterious(0.754)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
LYPLA2	11313	genome.wustl.edu	37	1	24120565	24120565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_007260.2	+1	reviewed	p.I103N	1.000	92	0%	88	48.9%	48	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_2,superfamily_SSF53474
DLGAP3	58512	genome.wustl.edu	37	1	35370535	35370535	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001080418.1	-1	provisional	p.P150	0.954	11	0%	24	41.7%	0	-	-	-	-	NULL
USP21	27005	genome.wustl.edu	37	1	161131871	161131871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001014443.2	+1	reviewed	p.R215Q	1.000	147	0%	182	30.8%	27	25.9%	possibly_damaging(0.642)	tolerated(0.18)	neutral(0.281)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
C1orf110	339512	genome.wustl.edu	37	1	162824666	162824666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_178550.4	-1	validated	p.E266D	1.000	137	0%	312	31.4%	0	-	benign(0.105)	deleterious(0)	neutral(0.453)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178389708	178389708	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_170692.2	+1	reviewed	p.D191	1.000	89	0%	343	32.4%	0	-	-	-	-	HMMSmart_PH,superfamily_SSF50729
CACNA1E	777	genome.wustl.edu	37	1	181702603	181702603	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000721.2	+1	reviewed	p.S993	0.207	72	0%	94	19.1%	0	-	-	-	-	NULL
LOC100130996	100130996	genome.wustl.edu	37	1	182151937	182151937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	XM_001726581.1	-1	model	p.G118D	1.000	14	0%	32	34.4%	0	-	-	-	-	HMMPfam_Yippee
HMCN1	83872	genome.wustl.edu	37	1	185897727	185897727	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_031935.2	+1	reviewed	p.E494fs	0.998	-	-	-	-	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ASPM	259266	genome.wustl.edu	37	1	197060039	197060039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018136.4	-1	reviewed	p.R3193C	0.218	127	0%	448	29.2%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
NFASC	23114	genome.wustl.edu	37	1	204971808	204971808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000367172	+1	known	p.T1181M	1.000	115	0%	62	46.8%	0	-	benign(0.011)	deleterious(0.05)	neutral(0.346)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PLXNA2	5362	genome.wustl.edu	37	1	208390915	208390915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_025179.3	-1	reviewed	p.I118T	1.000	168	0%	156	31.4%	4	75%	benign(0.151)	deleterious(0)	neutral(0.458)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
IARS2	55699	genome.wustl.edu	37	1	220276800	220276800	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018060.3	+1	validated	p.V321E	0.970	200	0%	291	14.8%	6	33.3%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase
PPM1G	5496	genome.wustl.edu	37	2	27606308	27606308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_177983.1	-1	reviewed	p.R376C	1.000	125	0.8%	62	27.4%	201	27.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
CTNNA2	1496	genome.wustl.edu	37	2	80831269	80831269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004389.3	+1	validated	p.R754G	0.992	144	0%	352	64.2%	2	50%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
GNLY	10578	genome.wustl.edu	37	2	85922519	85922519	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006433.3	+1	reviewed	p.C43	0.000	91	0%	70	25.7%	5	0%	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98475817	98475817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_015348.1	-1	validated	p.S145T	1.000	127	0%	286	18.9%	1	100%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	NULL
DPP4	1803	genome.wustl.edu	37	2	162875281	162875282	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001935.3	-1	reviewed	p.S460fs	0.807:0.707	-	-	-	-	-	-	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
FAP	2191	genome.wustl.edu	37	2	163075615	163075615	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004460.2	-1	reviewed	p.E189*	0.936	188	0%	303	41.3%	0	-	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
SCN1A	6323	genome.wustl.edu	37	2	166898826	166898826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006920.4	-1	reviewed	p.S707R	1.000	226	0%	240	39.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202356157	202356157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000439140	-1	known	p.C1636Y	0.000	193	0.5%	439	44.2%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
PLEKHM3	389072	genome.wustl.edu	37	2	208795720	208795720	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001080475.2	-1	validated	p.Q606*	1.000	43	0%	22	40.9%	0	-	-	-	-	NULL
FARSB	10056	genome.wustl.edu	37	2	223493604	223493604	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_005687.3	-1	reviewed	p.V284	1.000	224	0%	325	46.2%	19	36.8%	-	-	-	superfamily_B3/B4 domain of PheRS PheT
SLC19A3	80704	genome.wustl.edu	37	2	228564142	228564142	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_025243.3	-1	reviewed	p.L97	1.000	81	0%	72	44.4%	0	-	-	-	-	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
CNTN6	27255	genome.wustl.edu	37	3	1269573	1269573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_014461.2	+1	reviewed	p.A85V	0.990	161	0%	254	40.9%	0	-	benign(0)	tolerated(1)	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TGFBR2	7048	genome.wustl.edu	37	3	30713742	30713742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001024847.2	+1	reviewed	p.R381Q	1.000	124	0%	90	34.4%	2	0%	possibly_damaging(0.446)	tolerated(0.09)	neutral(0.443)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SNRK	54861	genome.wustl.edu	37	3	43389019	43389019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001100594.1	+1	validated	p.A423V	0.090	154	0%	187	39.6%	4	0%	benign(0.273)	tolerated(0.07)	neutral(0.348)	NULL
ENSG00000232483	0	genome.wustl.edu	37	3	48731857	48731857	+	RNA	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000421921	+1	novel	NULL	0.002	91	0%	102	34.3%	8	25%	-	-	-	-
TNNC1	7134	genome.wustl.edu	37	3	52485806	52485806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_003280.2	-1	reviewed	p.G91W	1.000	181	0%	17	41.2%	116	50.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_EF-hand
ADAMTS9	56999	genome.wustl.edu	37	3	64592708	64592708	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000481060	-1	known	p.A190V	1.000	141	0%	189	39.2%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
GOLGB1	2804	genome.wustl.edu	37	3	121383410	121383410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004487.3	-1	validated	p.R3233W	1.000	108	0%	152	46.7%	91	51.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125725323	125725323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001008485.1	-1	validated	p.C484Y	0.000	74	0%	59	47.5%	151	45%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
NPHP3	27031	genome.wustl.edu	37	3	132407630	132407630	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_153240.3	-1	reviewed	p.Q997*	1.000	120	0%	88	29.5%	3	33.3%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
PIK3CA	5290	genome.wustl.edu	37	3	178922324	178922324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006218.2	+1	reviewed	p.E365K	1.000	341	0%	353	47.6%	0	-	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
PIK3CA	5290	genome.wustl.edu	37	3	178928226	178928226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006218.2	+1	reviewed	p.P471L	1.000	166	0%	195	44.1%	0	-	possibly_damaging(0.617)	deleterious(0.01)	deleterious(0.620)	HMMPfam_PI3K_C2,superfamily_C2_CaLB
NSUN7	79730	genome.wustl.edu	37	4	40810420	40810420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024677.4	+1	validated	p.R541W	0.948	100	0%	114	43%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CABS1	85438	genome.wustl.edu	37	4	71201020	71201020	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_033122.3	+1	validated	p.S88	0.229	46	0%	83	22.9%	0	-	-	-	-	NULL
STBD1	8987	genome.wustl.edu	37	4	77230789	77230789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_003943.3	+1	validated	p.T238N	0.000	144	0%	214	48.1%	3	33.3%	possibly_damaging(0.527)	tolerated(0.19)	neutral(0.227)	NULL
HERC6	55008	genome.wustl.edu	37	4	89358116	89358116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_017912.3	+1	validated	p.R826H	0.003	113	0%	202	39.1%	12	50%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MAP9	79884	genome.wustl.edu	37	4	156276269	156276269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001039580.1	-1	validated	p.R445K	1.000	244	0%	640	39.1%	4	50%	benign(0.017)	tolerated(0.34)	neutral(0.024)	NULL
CEP72	55722	genome.wustl.edu	37	5	640649	640651	+	In_Frame_Del	DEL	AGC	AGC	-	rs141221365	by1000genomes	TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018140.3	+1	reviewed	p.Q494in_frame_del	0.456:0.454:0.818	-	-	-	-	-	-	-	-	-	NULL
PAPD7	11044	genome.wustl.edu	37	5	6750520	6750520	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006999.4	+1	reviewed	p.P338	0.952	82	0%	70	44.3%	3	66.6%	-	-	-	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140516567	140516567	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_015669.2	+1	reviewed	p.S517	0.012	92	0%	58	48.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SH3TC2	79628	genome.wustl.edu	37	5	148392241	148392241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024577.3	-1	reviewed	p.L1037P	1.000	83	0%	83	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
PDLIM7	9260	genome.wustl.edu	37	5	176918825	176918825	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_005451.3	-1	reviewed	p.S127	0.957	16	0.000	9	0.556	66	57.5%	-	-	-	NULL
RMND5B	64777	genome.wustl.edu	37	5	177574884	177574884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_022762.3	+1	provisional	p.K373R	1.000	298	0%	135	48.9%	42	54.7%	benign(0.115)	tolerated(0.56)	neutral(0.015)	superfamily_RING/U-box
CANX	821	genome.wustl.edu	37	5	179151705	179151705	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001024649.1	+1	reviewed	p.P522	1.000	241	0%	323	47.1%	140	45%	-	-	-	NULL
TNXB	7148	genome.wustl.edu	37	6	32049416	32049416	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_019105.6	-1	reviewed	p.E1257	0.000	38	0%	57	49.1%	1	0%	-	-	-	NULL
RING1	6015	genome.wustl.edu	37	6	33177736	33177736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002931.3	+1	reviewed	p.R95Q	1.000	96	0%	104	39.4%	43	48.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RING/U-box
IP6K3	117283	genome.wustl.edu	37	6	33693277	33693277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001142883.1	-1	reviewed	p.M236V	1.000	100	0%	37	40.5%	0	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_IPK,superfamily_SAICAR synthase-like
SASH1	23328	genome.wustl.edu	37	6	148835535	148835535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_015278.3	+1	validated	p.R269G	1.000	100	0%	207	40.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
IGF2BP3	10643	genome.wustl.edu	37	7	23385594	23385594	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006547.2	-1	reviewed	p.I302	0.996	433	0%	720	43.2%	0	-	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
CALN1	83698	genome.wustl.edu	37	7	71743709	71743709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_031468.3	-1	validated	p.S69N	1.000	67	0%	66	48.5%	0	-	benign(0.006)	tolerated(0.4)	neutral(0.016)	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77325866	77325866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_198467.2	+1	validated	p.G27D	0.115	39	0%	23	43.5%	1	100%	unknown(0)	deleterious(0)	-	NULL
MTERF	7978	genome.wustl.edu	37	7	91503443	91503443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006980.3	-1	validated	p.G222D	0.017	84	0%	234	44.4%	2	100%	benign(0.02)	tolerated(0.16)	neutral(0.060)	HMMPfam_mTERF,HMMSmart_SM00733
DYNC1I1	1780	genome.wustl.edu	37	7	95614144	95614144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004411.4	+1	validated	p.T217A	1.000	94	0%	257	42.4%	0	-	possibly_damaging(0.76)	deleterious(0.01)	deleterious(0.687)	superfamily_WD40 repeat-like
FEZF1	389549	genome.wustl.edu	37	7	121942390	121942391	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001024613.2	-1	validated	p.L360fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TAS2R38	5726	genome.wustl.edu	37	7	141672742	141672742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_176817.4	-1	reviewed	p.V250I	0.000	75	0%	100	43%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_SSF81321
TRBV6-6	28601	genome.wustl.edu	37	7	142162152	142162152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000390371	-1	known	p.Q41H	0.000	243	0%	183	48.1%	0	-	benign(0.023)	tolerated(0.05)	neutral(0.346)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TMEM176A	55365	genome.wustl.edu	37	7	150500852	150500852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018487.2	+1	validated	p.A163T	0.000	94	0%	24	37.5%	9	11.1%	possibly_damaging(0.863)	tolerated(0.94)	neutral(0.334)	HMMPfam_LR8
DLC1	10395	genome.wustl.edu	37	8	13162749	13162749	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000511869	-1	known	p.L459	0.000	165	0%	742	19.9%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41573292	41573292	+	Missense_Mutation	SNP	C	C	T	rs190256257	by1000genomes	TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001142446.1	-1	reviewed	p.A527T	1.000	184	0.5%	145	24.1%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TGS1	96764	genome.wustl.edu	37	8	56723456	56723456	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024831.6	+1	validated	p.I720	0.712	289	0%	547	23.2%	8	0%	-	-	-	HMMPfam_Methyltransf_15,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ASPH	444	genome.wustl.edu	37	8	62416017	62416017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004318.3	-1	reviewed	p.E726D	0.998	88	0%	112	18.8%	14	14.2%	possibly_damaging(0.93)	deleterious(0.01)	deleterious(0.782)	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197
ARFGEF1	10565	genome.wustl.edu	37	8	68211495	68211495	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006421.3	-1	reviewed	p.G136	1.000	207	0%	527	20.1%	1	0%	-	-	-	superfamily_ARM-type_fold
ZFHX4	79776	genome.wustl.edu	37	8	77763298	77763298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024721.4	+1	validated	p.Q1336*	1.000	120	0%	693	24.1%	0	-	-	-	-	NULL
C8orf38	137682	genome.wustl.edu	37	8	96059356	96059356	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_152416.2	+1	reviewed	e6+1	1.000	212	0.5%	728	22.8%	0	-	-	-	-	-
CSMD3	114788	genome.wustl.edu	37	8	113966973	113966973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_198123.1	-1	validated	p.F454L	1.000	126	0%	249	74.3%	0	-	unknown(0)	tolerated(0.74)	-	NULL
TMEM71	137835	genome.wustl.edu	37	8	133764160	133764160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_144649.2	-1	validated	p.R62H	1.000	166	0%	453	23.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5921771	5921771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001017969.2	-1	validated	p.S1409A	0.959	358	0%	886	42.2%	1	100%	benign(0.133)	tolerated(0.32)	neutral(0.035)	NULL
FAM154A	158297	genome.wustl.edu	37	9	18928944	18928944	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_153707.1	-1	predicted	p.Y177	0.004	329	0%	375	41.6%	0	-	-	-	-	NULL
UBAP2	55833	genome.wustl.edu	37	9	33922847	33922847	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018449.2	-1	reviewed	p.G1034	1.000	171	0%	135	43%	33	51.5%	-	-	-	NULL
FAM120A	23196	genome.wustl.edu	37	9	96259788	96259788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_014612.3	+1	validated	p.D280E	0.999	213	0%	116	42.2%	11	54.5%	probably_damaging(0.997)	tolerated(0.44)	deleterious(0.479)	NULL
C9orf84	158401	genome.wustl.edu	37	9	114449074	114449074	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_173521.3	-1	validated	p.G1437	0.981	213	0%	315	44.8%	0	-	-	-	-	NULL
TRIM32	22954	genome.wustl.edu	37	9	119460118	119460118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001099679.1	+1	reviewed	p.R33C	0.998	74	0%	56	39.3%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
ABL1	25	genome.wustl.edu	37	9	133760629	133760629	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_007313.2	+1	reviewed	p.T1003	0.000	32	0.000	8	0.875	8	37.5%	-	-	-	HMMPfam_F_actin_bind
FAM208B	54906	genome.wustl.edu	37	10	5789058	5789058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_017782.4	+1	validated	p.S1225L	0.004	73	0%	42	40.5%	2	0%	benign(0.176)	tolerated(0.12)	neutral(0.277)	NULL
FAM21C	253725	genome.wustl.edu	37	10	46245584	46245584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_015262.2	+1	validated	p.G258D	1.000	440	0%	743	41%	2	100%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
MKI67	4288	genome.wustl.edu	37	10	129905111	129905112	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002417.4	-1	reviewed	p.E1664fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_K167R
MUC15	143662	genome.wustl.edu	37	11	26587134	26587134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001135091.1	-1	validated	p.S118L	0.000	278	0%	389	42.2%	0	-	benign(0.176)	tolerated(0.53)	neutral(0.024)	NULL
ELP4	26610	genome.wustl.edu	37	11	31805060	31805060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_019040.3	+1	reviewed	p.H421Q	1.000	50	0%	30	36.7%	42	47.6%	benign(0.344)	-	-	HMMPfam_PAXNEB
ENSG00000205035	0	genome.wustl.edu	37	11	49598135	49598135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000357667	+1	known	p.I112T	1.000	118	0%	77	35.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
C11orf10	746	genome.wustl.edu	37	11	61557280	61557280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_014206.3	-1	validated	p.G76D	1.000	85	0%	50	28%	699	37.3%	unknown(0)	tolerated(0.11)	-	HMMPfam_UPF0197
RAB3IL1	5866	genome.wustl.edu	37	11	61675087	61675087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_013401.2	-1	provisional	p.R104W	1.000	105	0%	21	33.3%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec2p
LOC729523	729523	genome.wustl.edu	37	11	71574583	71574583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	XM_001130520.1	+1	model	p.R39K	0.004	514	0%	906	42.6%	0	-	-	-	-	HMMPfam_Defensin_beta
GAB2	9846	genome.wustl.edu	37	11	77932791	77932791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_080491.2	-1	reviewed	p.R565C	1.000	388	0%	396	38.6%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ANGPTL5	253935	genome.wustl.edu	37	11	101762091	101762091	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_178127.4	-1	validated	p.T362	0.641	162	0%	373	43.7%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
LOC728196	728196	genome.wustl.edu	37	11	111384326	111384326	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	XR_040780.2	+1	model	NULL	0.000	69	0%	23	60.9%	1	100%	-	-	-	-
ITPR2	3709	genome.wustl.edu	37	12	26709303	26709303	+	Silent	SNP	T	T	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002223.2	-1	validated	p.V1609	0.001	94	0%	124	51.6%	0	-	-	-	-	NULL
KIF21A	55605	genome.wustl.edu	37	12	39763932	39763932	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_017641.3	-1	validated	p.S59C	1.000	174	0%	306	41.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACVRL1	94	genome.wustl.edu	37	12	52309048	52309048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000020.2	+1	reviewed	p.T271M	1.000	40	0.000	5	0.800	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like,HMMPfam_Pkinase
KRT77	374454	genome.wustl.edu	37	12	53085090	53085090	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_175078.2	-1	reviewed	p.G532	0.000	26	0%	15	53.3%	0	-	-	-	-	NULL
GPR84	53831	genome.wustl.edu	37	12	54756587	54756588	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_020370.2	-1	validated	p.V350fs	0.996:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DYRK2	8445	genome.wustl.edu	37	12	68051829	68051829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006482.2	+1	reviewed	p.T381M	1.000	165	0%	182	37.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPRQ	374462	genome.wustl.edu	37	12	80889052	80889052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000266688	+1	known	p.P595H	1.000	92	0%	114	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDK17	5128	genome.wustl.edu	37	12	96674655	96674655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002595.3	-1	reviewed	p.I489V	1.000	113	0%	221	47.1%	1	0%	benign(0.071)	tolerated(0.17)	neutral(0.064)	superfamily_Protein kinase-like (PK-like)
MYH7	4625	genome.wustl.edu	37	14	23888457	23888457	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000257.2	-1	reviewed	p.L1301	1.000	110	0%	65	52.3%	0	-	-	-	-	HMMPfam_Myosin_tail_1
NYNRIN	57523	genome.wustl.edu	37	14	24884896	24884896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_025081.2	+1	validated	p.G1314D	1.000	102	0%	65	36.9%	3	66.6%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Ribonuclease H-like
SNX6	58533	genome.wustl.edu	37	14	35062328	35062328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_152233.2	-1	reviewed	p.R226Q	1.000	181	0%	269	41.3%	8	25%	benign(0.054)	tolerated(0.09)	neutral(0.300)	HMMPfam_Vps5
PPP2R5E	5529	genome.wustl.edu	37	14	63860579	63860579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006246.2	-1	reviewed	p.P270T	1.000	221	0%	72	51.4%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56,superfamily_ARM repeat
IRF2BPL	64207	genome.wustl.edu	37	14	77491939	77491939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024496.2	-1	validated	p.V733I	1.000	63	0%	12	50%	37	43.2%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102500780	102500780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001376.4	+1	reviewed	p.R3582Q	0.927	113	0%	43	23.3%	13	53.8%	possibly_damaging(0.683)	deleterious(0.01)	deleterious(0.649)	NULL
IGHM	3507	genome.wustl.edu	37	14	106320571	106320571	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000390558	-1	known	p.A409V	0.814	96	1%	44	40.9%	7	0%	-	-	-	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
PLCB2	5330	genome.wustl.edu	37	15	40587186	40587186	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004573.2	-1	validated	p.M619fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
TRIM69	140691	genome.wustl.edu	37	15	45047236	45047236	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_182985.3	+1	reviewed	p.R49*	0.005	169	0%	139	40.3%	0	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
AP4E1	23431	genome.wustl.edu	37	15	51290013	51290013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_007347.3	+1	validated	p.V946A	0.700	64	0%	157	13.4%	0	-	possibly_damaging(0.442)	deleterious(0)	deleterious(0.589)	HMMPfam_Coatamer_beta_C
CGNL1	84952	genome.wustl.edu	37	15	57809102	57809102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_032866.3	+1	validated	p.R843Q	0.000	54	0%	81	38.3%	2	100%	benign(0.003)	tolerated(0.3)	neutral(0.029)	NULL
NARG2	79664	genome.wustl.edu	37	15	60747530	60747530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024611.4	-1	validated	p.H260Y	1.000	260	0%	314	38.2%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
ST8SIA2	8128	genome.wustl.edu	37	15	93007612	93007612	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006011.3	+1	reviewed	p.T375	1.000	57	0%	63	34.9%	0	-	-	-	-	NULL
MMP25	64386	genome.wustl.edu	37	16	3108983	3108983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_022468.4	+1	reviewed	p.P525T	0.001	17	0.000	7	0.571	2	100%	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
LOC342346	342346	genome.wustl.edu	37	16	4625845	4625845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001145011.1	+1	predicted	p.Q455R	0.000	59	0%	21	33.3%	0	-	possibly_damaging(0.662)	tolerated(0.36)	neutral(0.254)	NULL
UMOD	7369	genome.wustl.edu	37	16	20344657	20344657	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001008389.1	-1	reviewed	p.T634	0.225	79	0%	41	39%	0	-	-	-	-	NULL
LOC729264	729264	genome.wustl.edu	37	16	32264756	32264756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	XM_001133674.2	+1	model	p.G28R	0.201	240	0%	154	10.4%	0	-	-	-	-	NULL
SPIRE2	84501	genome.wustl.edu	37	16	89934601	89934601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_032451.1	+1	validated	p.V595I	0.988	269	0%	107	41.1%	7	42.8%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	PatternScan_2FE2S_FER_1,superfamily_FYVE/PHD zinc finger
KIF1C	10749	genome.wustl.edu	37	17	4925485	4925485	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006612.5	+1	validated	p.T703	0.666	30	0%	13	30.8%	26	61.5%	-	-	-	NULL
ACADVL	37	genome.wustl.edu	37	17	7124101	7124101	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000018.2	+1	reviewed	p.Q98	0.992	179	0%	41	48.8%	110	40.9%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
CHRNB1	1140	genome.wustl.edu	37	17	7357776	7357776	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000747.2	+1	reviewed	p.V327	0.428	336	0%	203	44.8%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MYO18A	399687	genome.wustl.edu	37	17	27419899	27419899	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_078471.3	-1	validated	p.R1683*	0.995	130	0%	29	41.4%	14	42.8%	-	-	-	NULL
ATAD5	79915	genome.wustl.edu	37	17	29162842	29162842	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024857.3	+1	provisional	p.S581	0.090	72	0%	109	34.9%	0	-	-	-	-	NULL
CACNB1	782	genome.wustl.edu	37	17	37351176	37351176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000723.3	-1	reviewed	p.S44R	1.000	102	0%	57	33.3%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MRPL10	124995	genome.wustl.edu	37	17	45905968	45905968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_145255.2	-1	reviewed	p.H41Y	1.000	79	0%	36	38.9%	12	58.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PHB	5245	genome.wustl.edu	37	17	47486809	47486809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002634.2	-1	reviewed	p.R93C	1.000	145	0%	132	31.8%	207	47.3%	benign(0.041)	deleterious(0.03)	neutral(0.367)	HMMPfam_Band_7,HMMSmart_SM00244
KAT7	11143	genome.wustl.edu	37	17	47898741	47898741	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_007067.3	+1	provisional	p.R400G	1.000	190	0%	344	52.3%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
USP32	84669	genome.wustl.edu	37	17	58289440	58289440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_032582.3	-1	validated	p.S708R	1.000	254	0%	363	44.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ZNF521	25925	genome.wustl.edu	37	18	22805201	22805201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_015461.2	-1	validated	p.A894V	1.000	289	0%	296	47.6%	0	-	possibly_damaging(0.859)	tolerated(0.11)	deleterious(0.604)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATP8B1	5205	genome.wustl.edu	37	18	55359125	55359125	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_005603.4	-1	reviewed	p.D378	0.045	185	0%	141	39.7%	5	60%	-	-	-	superfamily_SSF81665
MUC16	94025	genome.wustl.edu	37	19	9061033	9061033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_024690.2	-1	validated	p.D8805Y	0.000	219	0%	215	46%	0	-	unknown(0)	-	-	NULL
OR10H4	126541	genome.wustl.edu	37	19	16060407	16060412	+	In_Frame_Del	DEL	TCATCA	TCATCA	-	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	TCATCA	TCATCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001004465.1	+1	validated	p.IM198in_frame_del	0.011:0.001:0.001:0.001:0.001:0.001	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ZNF208	7757	genome.wustl.edu	37	19	22155519	22155519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_007153.3	-1	provisional	p.V673I	0.996	108	0%	148	42.6%	0	-	benign(0.152)	tolerated(0.11)	neutral(0.285)	superfamily_SSF57667
CATSPERG	57828	genome.wustl.edu	37	19	38858185	38858185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_021185.4	+1	validated	p.T936I	0.992	352	0%	347	39.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CD177	57126	genome.wustl.edu	37	19	43858479	43858479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000457794	+1	known	p.R105H	0.885	61	0%	43	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF766	90321	genome.wustl.edu	37	19	52793534	52793534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001010851.2	+1	validated	p.H164D	0.000	100	0%	50	52%	2	100%	possibly_damaging(0.578)	tolerated(0.37)	neutral(0.217)	superfamily_C2H2 and C2HC zinc fingers
NOP56	10528	genome.wustl.edu	37	20	2637845	2637845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006392.2	+1	reviewed	p.S467N	0.162	80	0%	57	15.8%	116	11.2%	unknown(0)	tolerated(0.13)	-	NULL
OVOL2	58495	genome.wustl.edu	37	20	18022208	18022208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_021220.2	-1	validated	p.D161N	1.000	82	0%	70	42.9%	51	58.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RBL1	5933	genome.wustl.edu	37	20	35651208	35651208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_002895.2	-1	reviewed	p.R802C	1.000	132	0%	113	40.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
SRSF6	6431	genome.wustl.edu	37	20	42089431	42089431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006275.5	+1	reviewed	p.R255W	0.792	113	0%	119	39.5%	118	40.6%	unknown(0)	deleterious(0.01)	-	NULL
CRKL	1399	genome.wustl.edu	37	22	21272307	21272307	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_005207.3	+1	reviewed	p.Q29*	1.000	44	0%	18	61.1%	2	100%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RBFOX2	23543	genome.wustl.edu	37	22	36206024	36206024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001082578.1	-1	reviewed	p.D89N	1.000	195	0%	511	42.1%	7	14.2%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
DMD	1756	genome.wustl.edu	37	X	31224779	31224779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_004006.2	-1	reviewed	p.R3190Q	1.000	207	0%	367	45%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_efhand_1,superfamily_EF-hand
MAOB	4129	genome.wustl.edu	37	X	43628656	43628656	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000898.4	-1	reviewed	p.R415	0.998	201	0%	197	34%	3	66.6%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
CHST7	56548	genome.wustl.edu	37	X	46433794	46433794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_019886.2	+1	reviewed	p.P143L	1.000	30	0%	14	35.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CLCN5	1184	genome.wustl.edu	37	X	49855469	49855469	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001127898.1	+1	reviewed	p.D762	1.000	336	0%	430	43.3%	2	0%	-	-	-	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
CXorf67	340602	genome.wustl.edu	37	X	51150316	51150316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000342995	+1	known	p.Q150*	0.004	12	0%	10	70%	0	-	-	-	-	NULL
SMC1A	8243	genome.wustl.edu	37	X	53432580	53432580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_006306.2	-1	reviewed	p.R586W	0.999	62	0%	40	45%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540
TSR2	90121	genome.wustl.edu	37	X	54470969	54470969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_058163.1	+1	provisional	p.R188W	1.000	179	0%	419	42%	40	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BMP2KL	347359	genome.wustl.edu	37	X	73406965	73406965	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	ENST00000373488	+1	known	p.A404G	1.000	69	0%	81	44.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATRX	546	genome.wustl.edu	37	X	76937071	76937071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_000489.3	-1	reviewed	p.I1226T	1.000	202	0%	409	43%	3	100%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
PABPC5	140886	genome.wustl.edu	37	X	90691565	90691565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_080832.2	+1	reviewed	p.R330L	0.978	79	0%	148	42.6%	1	0%	possibly_damaging(0.818)	deleterious(0)	deleterious(0.754)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
DCAF12L2	340578	genome.wustl.edu	37	X	125298775	125298775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_001013628.2	-1	reviewed	p.R378H	0.996	53	0%	27	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR112	139378	genome.wustl.edu	37	X	135405035	135405035	+	Missense_Mutation	SNP	G	G	A	rs190730671	by1000genomes	TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_153834.3	+1	reviewed	p.A57T	0.975	80	0%	178	47.8%	0	-	probably_damaging(0.996)	-	-	superfamily_ConA_like_lec_gl
TMLHE	55217	genome.wustl.edu	37	X	154743712	154743712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M0-01A-11W-A10C-09	TCGA-BG-A0M0-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	39c1590c-2352-45cf-beb7-afb079e152f3	c71dd6da-98ee-40e3-919a-791a02c0e0c2	NM_018196.3	-1	reviewed	p.F191L	1.000	214	0%	730	47%	16	43.7%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_TauD,superfamily_Clavaminate synthase-like
