Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KAZ	23254	genome.wustl.edu	37	1	15430678	15430678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_201628.2	+1	validated	p.P681T	1.000	10	0%	26	53.8%	0	-	benign(0.328)	deleterious(0.01)	deleterious(0.509)	superfamily_SAM/Pointed domain
ARID1A	8289	genome.wustl.edu	37	1	27100207	27100207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_006015.4	+1	reviewed	p.R1335*	0.945	78	0%	121	55.4%	8	50%	-	-	-	NULL
GBP1	2633	genome.wustl.edu	37	1	89521740	89521740	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_002053.2	-1	validated	p.L443	0.033	199	0%	344	42.7%	2	0%	-	-	-	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
CCDC18	343099	genome.wustl.edu	37	1	93724433	93724433	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000421014	+1	known	p.I971T	0.998	90	0%	365	44.4%	11	63.6%	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152280891	152280891	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_002016.1	-1	reviewed	p.S2157	0.000	185	0%	558	33%	0	-	-	-	-	NULL
INSRR	3645	genome.wustl.edu	37	1	156814623	156814623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_014215.1	-1	validated	p.G817V	0.996	17	0%	47	19.1%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
APOBEC4	403314	genome.wustl.edu	37	1	183617486	183617486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_203454.2	-1	reviewed	p.T144M	0.000	125	0%	359	57.9%	0	-	benign(0.028)	tolerated(0.11)	neutral(0.273)	HMMPfam_APOBEC_N
ADSS	159	genome.wustl.edu	37	1	244583581	244583581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001126.2	-1	reviewed	p.K228fs	0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
BIRC6	57448	genome.wustl.edu	37	2	32692987	32692987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_016252.3	+1	reviewed	p.R1863H	1.000	70	0%	105	49.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EML6	400954	genome.wustl.edu	37	2	55040504	55040504	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001039753.2	+1	validated	p.C111	1.000	142	0%	563	40%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
ZNF2	7549	genome.wustl.edu	37	2	95845938	95845938	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000453539	+1	known	p.Q65	0.934	109	0%	390	47.4%	2	0%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SLC25A12	8604	genome.wustl.edu	37	2	172650225	172650225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_003705.3	-1	reviewed	p.R453H	1.000	85	1.2%	240	48.3%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CD28	940	genome.wustl.edu	37	2	204591400	204591400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_006139.2	+1	validated	p.D33N	0.000	49	0%	179	50.8%	0	-	benign(0)	tolerated(1)	-	superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220353302	220353302	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_005876.4	+1	validated	p.A2647	0.745	12	0%	12	41.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SEC13	6396	genome.wustl.edu	37	3	10354272	10354272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_183352.1	-1	reviewed	p.D103N	1.000	50	0%	61	45.9%	88	44.3%	benign(0.007)	tolerated(0.12)	neutral(0.261)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
LOC100132526	100132526	genome.wustl.edu	37	3	13976616	13976616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	XM_001721212.1	+1	model	p.V23I	0.611	13	0.000	5	0.800	0	-	-	-	-	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37034364	37034364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_014805.3	-1	reviewed	p.V69M	0.583	8	0.000	17	0.588	2	0%	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	G	rs121913403	byCluster	TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001098209.1	+1	reviewed	p.S37C	1.000	47	0%	85	38.8%	39	17.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41277973	41277973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001098209.1	+1	reviewed	p.S646F	0.999	299	0%	513	46%	88	46.5%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PROS1	5627	genome.wustl.edu	37	3	93615535	93615535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_000313.3	-1	reviewed	p.V284I	0.977	76	0%	106	37.7%	1	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_ConA_like_lec_gl
C3orf27	23434	genome.wustl.edu	37	3	128292319	128292320	+	Frame_Shift_Del	DEL	TC	TC	-	rs147519916	byCluster;by1000genomes	TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_007354.1	-1	provisional	p.D85fs	0.075:0.076	-	-	-	-	-	-	-	-	-	NULL
IGJ	3512	genome.wustl.edu	37	4	71527921	71527921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_144646.3	-1	validated	p.E26K	0.195	91	0%	144	47.2%	5	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
RXFP1	59350	genome.wustl.edu	37	4	159568032	159568032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_021634.2	+1	provisional	p.W479G	1.000	136	0%	288	46.5%	4	75%	possibly_damaging(0.728)	deleterious(0.03)	deleterious(0.629)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MARCH11	441061	genome.wustl.edu	37	5	16067889	16067889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001102562.1	-1	provisional	p.H300Q	0.707	49	0%	254	30.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591037	67591037	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_181523.1	+1	reviewed	p.R544*	0.377	169	0%	299	43.8%	22	40.9%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591115	67591116	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_181523.1	+1	reviewed	p.I571fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82833400	82833401	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_004385.4	+1	reviewed	p.T1526fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PCDHB6	56130	genome.wustl.edu	37	5	140532010	140532010	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_018939.2	+1	reviewed	p.S724	0.000	32	0%	83	47%	2	50%	-	-	-	NULL
SLIT3	6586	genome.wustl.edu	37	5	168137914	168137914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_003062.2	-1	validated	p.R902H	1.000	5	0.000	23	0.478	8	25%	benign(0.036)	tolerated(0.14)	neutral(0.252)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
TREM2	54209	genome.wustl.edu	37	6	41126749	41126749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_018965.2	-1	reviewed	p.A180T	1.000	55	0%	207	41.1%	18	0%	possibly_damaging(0.842)	deleterious(0.03)	deleterious(0.686)	NULL
RSPH9	221421	genome.wustl.edu	37	6	43623347	43623347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_152732.3	+1	provisional	p.D148N	1.000	38	0%	138	44.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
CAPN11	11131	genome.wustl.edu	37	6	44140158	44140158	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_007058.3	+1	reviewed	e5+1	1.000	51	0%	103	45.6%	0	-	-	-	-	-
EIF2AK1	27102	genome.wustl.edu	37	7	6080612	6080612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_014413.3	-1	reviewed	p.P344S	0.001	120	0%	213	34.3%	39	28.2%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IKZF1	10320	genome.wustl.edu	37	7	50467971	50467971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000331340	+1	known	p.S402R	1.000	7	0.000	20	0.250	0	-	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	NULL
RFC2	5982	genome.wustl.edu	37	7	73668699	73668699	+	Silent	SNP	G	G	A	rs150851734	by1000genomes	TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_181471.1	-1	reviewed	p.A5	0.000	8	0.000	8	0.500	8	75%	-	-	-	NULL
ATP6V0A4	50617	genome.wustl.edu	37	7	138444495	138444495	+	Splice_Site	SNP	A	A	G	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_020632.2	-1	reviewed	e6+2	1.000	47	0%	217	25.8%	5	100%	-	-	-	-
KIAA0146	23514	genome.wustl.edu	37	8	48612995	48612995	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001080394.1	+1	predicted	p.T572	0.543	114	0%	317	40.1%	11	36.3%	-	-	-	NULL
CHD7	55636	genome.wustl.edu	37	8	61769105	61769105	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_017780.2	+1	reviewed	p.E2422	1.000	74	0%	155	44.5%	4	50%	-	-	-	NULL
PREX2	80243	genome.wustl.edu	37	8	69104650	69104650	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_024870.2	+1	validated	p.C1498	1.000	52	1.9%	129	45%	10	80%	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77768193	77768193	+	Silent	SNP	C	C	T	rs139869161	by1000genomes	TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_024721.4	+1	validated	p.C2967	1.000	27	0%	92	35.9%	0	-	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ADCY8	114	genome.wustl.edu	37	8	132051645	132051645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001115.2	-1	reviewed	p.R312Q	0.983	12	0%	26	46.2%	0	-	possibly_damaging(0.774)	tolerated(0.38)	neutral(0.306)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133844570	133844570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_016018.4	+1	validated	p.R612Q	1.000	163	0%	369	46.6%	5	40%	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33524338	33524339	+	Frame_Shift_Ins	INS	-	-	ATCGCGGGTTTGGGGGTGG	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	XM_001718334.2	+1	model	p.V125fs	0.562:0.557	-	-	-	-	-	-	-	-	-	superfamily_Ankyrin repeat
ENHO	375704	genome.wustl.edu	37	9	34521654	34521654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_198573.2	-1	validated	p.V14I	0.991	27	0%	46	37%	0	-	benign(0)	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140846827	140846827	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_000718.2	+1	validated	p.S356	0.858	58	0%	169	42%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
NRG3	10718	genome.wustl.edu	37	10	84118578	84118578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001010848.3	+1	reviewed	p.E303K	1.000	40	0%	222	27%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
PTEN	5728	genome.wustl.edu	37	10	89653842	89653842	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000371953	+1	known	p.N48fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720801	89720802	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000371953	+1	known	p.T319fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FAM160A2	84067	genome.wustl.edu	37	11	6243762	6243762	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_032127.3	-1	validated	p.L367	0.998	66	0%	269	41.6%	11	45.4%	-	-	-	HMMPfam_RAI16-like
AMPD3	272	genome.wustl.edu	37	11	10517281	10517282	+	Splice_Site	INS	-	-	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_000480.2	+1	reviewed	e9+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
LOC100287736	100287736	genome.wustl.edu	37	11	63033555	63033555	+	Silent	SNP	G	G	A	rs188846497	by1000genomes	TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	XM_002343091.1	-1	model	p.T58	0.000	23	0%	30	60%	0	-	-	-	-	NULL
LRTOMT	220074	genome.wustl.edu	37	11	71817087	71817087	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001145308.1	+1	validated	p.T63	0.874	13	0%	23	34.8%	0	-	unknown(0)	-	-	NULL
APLP2	334	genome.wustl.edu	37	11	130010309	130010309	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001642.2	+1	validated	p.E630	0.990	124	0%	538	45.7%	138	44.9%	-	-	-	NULL
KCNA6	3742	genome.wustl.edu	37	12	4920526	4920526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_002235.3	+1	reviewed	p.S440L	1.000	57	0%	114	46.5%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_Ion_trans,superfamily_SSF81324
EPS8	2059	genome.wustl.edu	37	12	15777246	15777246	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_004447.5	-1	reviewed	p.Q714*	1.000	76	0%	402	46.3%	15	26.6%	-	-	-	NULL
KRT6B	3854	genome.wustl.edu	37	12	52841192	52841192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_005555.3	-1	reviewed	p.V493I	0.005	46	0%	208	51.4%	1	0%	unknown(0)	tolerated(0.5)	-	NULL
KIAA1033	23325	genome.wustl.edu	37	12	105558066	105558066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_015275.1	+1	validated	p.R1112Q	1.000	90	0%	246	43.1%	6	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CAB39L	81617	genome.wustl.edu	37	13	49925022	49925022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001079670.1	-1	validated	p.R141H	1.000	95	0%	168	44.6%	5	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_Mo25,superfamily_ARM-type_fold
MAP4K5	11183	genome.wustl.edu	37	14	50912825	50912825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_006575.3	-1	reviewed	p.R386H	0.930	148	0%	277	47.7%	6	0%	possibly_damaging(0.771)	tolerated(0.21)	neutral(0.330)	superfamily_Protein kinase-like (PK-like)
SECISBP2L	9728	genome.wustl.edu	37	15	49284892	49284892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_014701.2	-1	provisional	p.E907A	1.000	67	0%	310	37.1%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100289289	100289289	genome.wustl.edu	37	15	62554431	62554431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	XM_002343368.1	-1	model	p.V293M	1.000	15	0%	21	76.2%	0	-	-	-	-	NULL
HCN4	10021	genome.wustl.edu	37	15	73614890	73614890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_005477.2	-1	reviewed	p.A1182T	1.000	6	0.000	19	0.474	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
ADAMTS17	170691	genome.wustl.edu	37	15	100692832	100692832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_139057.2	-1	reviewed	p.F486L	1.000	22	0%	25	48%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMSmart_SM00608
PIGQ	9091	genome.wustl.edu	37	16	628842	628842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_148920.1	+1	reviewed	p.S376L	1.000	39	0%	19	42.1%	40	50%	possibly_damaging(0.772)	tolerated(0.1)	deleterious(0.573)	HMMPfam_Gpi1
VWA3A	146177	genome.wustl.edu	37	16	22142569	22142569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_173615.3	+1	validated	p.V566M	0.074	63	0%	281	49.5%	2	50%	benign(0.006)	tolerated(0.1)	neutral(0.286)	superfamily_vWA-like
CDR2	1039	genome.wustl.edu	37	16	22361121	22361121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001802.1	-1	validated	p.A81G	1.000	173	0%	416	41.6%	7	71.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
LHX1	3975	genome.wustl.edu	37	17	35297654	35297654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_005568.2	+1	reviewed	p.R80W	1.000	14	0%	11	45.5%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
ENSG00000228782	0	genome.wustl.edu	37	17	45567595	45567596	+	Splice_Site	DEL	TC	TC	-	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	ENST00000425159	-1	known	e3+2	0.724	-	-	-	-	-	-	-	-	-	-
SPOP	8405	genome.wustl.edu	37	17	47699360	47699360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001007226.1	-1	reviewed	p.E50K	1.000	107	0%	255	40%	9	33.3%	benign(0.22)	deleterious(0.05)	neutral(0.367)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
C17orf101	79701	genome.wustl.edu	37	17	80373281	80373281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_175902.4	-1	validated	p.R99S	0.866	32	0%	18	38.9%	22	59%	possibly_damaging(0.436)	tolerated(0.07)	neutral(0.461)	NULL
LRRC30	339291	genome.wustl.edu	37	18	7231260	7231260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001105581.1	+1	provisional	p.S42P	0.140	22	0%	38	44.7%	0	-	benign(0.147)	deleterious(0.04)	neutral(0.362)	superfamily_SSF52058
SERPINB3	6317	genome.wustl.edu	37	18	61326648	61326648	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_006919.2	-1	validated	p.T112	0.000	235	0%	489	38.9%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
C18orf62	284274	genome.wustl.edu	37	18	73139426	73139426	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001037331.2	-1	provisional	p.F31	0.000	115	0%	380	43.9%	0	-	-	-	-	NULL
GATAD2A	54815	genome.wustl.edu	37	19	19605151	19605151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_017660.3	+1	provisional	p.R195W	0.997	22	0%	29	51.7%	18	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
USF2	7392	genome.wustl.edu	37	19	35769888	35769888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_003367.2	+1	reviewed	p.R288W	1.000	15	0%	18	44.4%	189	44.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
KRTAP19-2	337969	genome.wustl.edu	37	21	31859640	31859640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_181608.1	-1	provisional	p.G10S	0.000	48	0%	171	52%	0	-	unknown(0)	-	-	NULL
RBBP7	5931	genome.wustl.edu	37	X	16875775	16875775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_002893.3	-1	reviewed	p.Y180C	1.000	159	0%	378	42.3%	228	99.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAP3K15	389840	genome.wustl.edu	37	X	19428044	19428044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001001671.3	-1	validated	p.K25E	1.000	406	0%	383	40.5%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
FAM48B2	170067	genome.wustl.edu	37	X	24329039	24329039	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001136233.1	-1	provisional	p.Q798	0.000	49	0%	115	44.3%	0	-	-	-	-	NULL
SH3BGRL	6451	genome.wustl.edu	37	X	80533839	80533839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_003022.2	+1	validated	p.A81T	1.000	120	0%	382	43.2%	46	86.9%	probably_damaging(0.982)	tolerated(0.24)	neutral(0.464)	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
DACH2	117154	genome.wustl.edu	37	X	85769338	85769338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_053281.3	+1	reviewed	p.R195H	1.000	50	0%	212	45.8%	0	-	benign(0.361)	tolerated(0.49)	neutral(0.125)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910400	101910400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M3-01A-11W-A10C-09	TCGA-BG-A0M3-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6915ff9b-f798-4960-bef8-716d0d93c31a	016d88a4-1bc5-4103-92a7-9a83231b9375	NM_001099410.1	+1	reviewed	p.S520L	0.929	59	0%	185	53%	2	50%	possibly_damaging(0.839)	deleterious(0.03)	deleterious(0.685)	NULL
