Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CACNA1E	777	genome.wustl.edu	37	1	181767527	181767527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_000721.2	+1	reviewed	p.R2124W	1.000	50	0%	114	60.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USH2A	7399	genome.wustl.edu	37	1	215821005	215821005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_206933.2	-1	reviewed	p.E4884K	0.999	97	0%	112	16.1%	0	-	probably_damaging(0.996)	tolerated(0.72)	neutral(0.463)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
OR2B11	127623	genome.wustl.edu	37	1	247614573	247614573	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001004492.1	-1	provisional	p.R238*	0.198	384	0.5%	242	55.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000229703	0	genome.wustl.edu	37	1	248856024	248856024	+	Splice_Site	DEL	A	A	-	rs145695091	byCluster;by1000genomes	TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	ENST00000437830	+1	known	NULL	0.005	-	-	-	-	-	-	-	-	-	-
VIL1	7429	genome.wustl.edu	37	2	219295615	219295615	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	ENST00000440053	+1	known	p.A372	0.000	61	0%	34	58.8%	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001098209.1	+1	reviewed	p.S37F	1.000	74	0%	101	39.6%	54	42.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIML1	339976	genome.wustl.edu	37	4	189068092	189068092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_178556.3	+1	provisional	p.D325H	1.000	44	0%	73	41.1%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_PRY
ROPN1L	83853	genome.wustl.edu	37	5	10448390	10448390	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_031916.3	+1	reviewed	p.S50	0.001	74	0%	63	22.2%	2	50%	-	-	-	superfamily_Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit
TMEM171	134285	genome.wustl.edu	37	5	72419676	72419676	+	Missense_Mutation	SNP	G	G	T	rs150702126	by1000genomes	TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_173490.6	+1	validated	p.G159V	1.000	364	0%	368	47%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
ICA1	3382	genome.wustl.edu	37	7	8196560	8196578	+	Frame_Shift_Del	DEL	AAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAA	-	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	AAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	ENST00000407906	-1	known	p.F324fs	0.000:0.000:0.000:0.002:0.002:0.004:0.005:0.008:0.013:0.018:0.022:0.026:0.029:0.033:0.021:0.016:0.011:0.005:0.002	-	-	-	-	-	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100352874	100352874	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_003386.1	+1	reviewed	p.Y1050	0.390	34	0%	96	18.8%	0	-	-	-	-	superfamily_Serine proterase inhibitors,HMMPfam_TIL
SYPL1	6856	genome.wustl.edu	37	7	105738276	105738276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_006754.2	-1	validated	p.V106I	0.007	167	0%	117	49.6%	34	55.8%	possibly_damaging(0.664)	tolerated(0.23)	neutral(0.276)	HMMPfam_MARVEL
CYP11B1	1584	genome.wustl.edu	37	8	143957766	143957766	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_000497.3	-1	reviewed	p.R282P	0.000	339	0%	126	38.9%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_p450,superfamily_Cytochrome_P450
EPPK1	83481	genome.wustl.edu	37	8	144941004	144941004	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_031308.1	-1	validated	p.V2140L	0.081	61	0%	162	13.6%	0	-	benign(0.203)	tolerated(0.35)	neutral(0.040)	NULL
TOR2A	27433	genome.wustl.edu	37	9	130494333	130494333	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001085347.1	-1	validated	p.R316*	0.991	23	0%	64	37.5%	34	32.3%	-	-	-	HMMPfam_Torsin
DNHD1	144132	genome.wustl.edu	37	11	6568032	6568032	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_144666.2	+1	provisional	p.L1955	0.000	50	0%	37	40.5%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF141	50862	genome.wustl.edu	37	11	10546812	10546812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_016422.3	-1	reviewed	p.S121R	0.652	224	0%	264	42.8%	16	37.5%	benign(0.012)	tolerated(0.1)	neutral(0.287)	NULL
ARHGEF17	9828	genome.wustl.edu	37	11	73020375	73020376	+	In_Frame_Ins	INS	-	-	CTC	rs79815384		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_014786.3	+1	validated	p.235in_frame_insS	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
OR6X1	390260	genome.wustl.edu	37	11	123624800	123624800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001005188.1	-1	provisional	p.A143S	0.816	486	0%	279	12.2%	0	-	benign(0.117)	tolerated(0.05)	neutral(0.355)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CD4	920	genome.wustl.edu	37	12	6928013	6928013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_000616.3	+1	validated	p.R427C	0.999	101	0%	36	27.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDKN1B	1027	genome.wustl.edu	37	12	12870882	12870883	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_004064.3	+1	reviewed	p.H38fs	0.999:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CDI
ALPK3	57538	genome.wustl.edu	37	15	85400226	85400226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_020778.4	+1	validated	p.I955V	0.000	110	0%	70	18.6%	1	0%	benign(0.008)	deleterious(0.02)	neutral(0.383)	NULL
PDPK1	5170	genome.wustl.edu	37	16	2647260	2647260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_002613.3	+1	validated	p.T513S	1.000	60	0%	64	40.6%	1	100%	probably_damaging(0.96)	tolerated(0.25)	neutral(0.440)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3786666	3786666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_004380.2	-1	reviewed	p.I1515M	1.000	453	0%	440	32.7%	5	40%	possibly_damaging(0.692)	deleterious(0)	deleterious(0.692)	HMMPfam_DUF906
XPO6	23214	genome.wustl.edu	37	16	28167676	28167676	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_015171.2	-1	provisional	p.T272	1.000	343	0%	225	33.8%	6	50%	-	-	-	superfamily_ARM repeat
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001114974.1	+1	validated	e3+1	0.999	23	0%	31	32.3%	0	-	-	-	-	-
RNF112	7732	genome.wustl.edu	37	17	19318131	19318131	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_007148.4	+1	reviewed	p.R353*	0.616	53	0%	39	10.3%	0	-	-	-	-	superfamily_SSF52540
MGAT5B	146664	genome.wustl.edu	37	17	74878244	74878244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_198955.1	+1	validated	p.P76S	0.361	27	0%	10	40%	0	-	benign(0.15)	tolerated(0.12)	neutral(0.274)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14852418	14852421	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001145029.1	+1	validated	p.I1376fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CACNA1A	773	genome.wustl.edu	37	19	13319694	13319696	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001127222.1	-1	reviewed	p.H2219in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
ENSG00000213974	0	genome.wustl.edu	37	19	22786189	22786189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	ENST00000397112	+1	known	p.S213F	1.000	46	0%	21	33.3%	0	-	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31040279	31040279	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_014717.1	+1	provisional	p.P1251	0.274	8	0.000	19	0.632	0	-	-	-	-	NULL
CEACAM4	1089	genome.wustl.edu	37	19	42133330	42133330	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001817.2	-1	validated	p.M1R	0.408	83	0%	59	32.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_V-set
LILRB3	11025	genome.wustl.edu	37	19	54721020	54721020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001081450.1	-1	reviewed	p.S614F	0.006	395	0%	304	28.6%	1	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
NTSR1	4923	genome.wustl.edu	37	20	61386239	61386239	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_002531.2	+1	reviewed	e2+1	1.000	11	0%	21	61.9%	0	-	-	-	-	-
TMEM27	57393	genome.wustl.edu	37	X	15663111	15663111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_020665.4	-1	reviewed	p.S82*	1.000	321	0%	230	12.2%	2	0%	-	-	-	NULL
IL1RAPL1	11141	genome.wustl.edu	37	X	29973820	29973820	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_014271.3	+1	reviewed	p.N658	0.996	95	0%	77	20.8%	0	-	-	-	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38146241	38146241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0VT-01A-11D-A10M-09	TCGA-BG-A0VT-10A-01W-A124-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f04e89dc-47cb-4c84-a5f8-9a1856ecc794	3d780601-fd17-4d49-8c2d-1d6b98bbd6a4	NM_001034853.1	-1	reviewed	p.D671N	0.000	186	0%	817	35.3%	0	-	unknown(0)	deleterious(0)	-	NULL
