Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27087503	27087503	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_006015.4	+1	reviewed	p.R693*	1.000	141	0%	169	35.5%	2	50%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27094291	27094292	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_006015.4	+1	reviewed	p.S1001fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARID-like
AGBL4	84871	genome.wustl.edu	37	1	50163038	50163038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_032785.3	-1	validated	p.P77T	1.000	147	0%	73	26%	0	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
TYW3	127253	genome.wustl.edu	37	1	75229758	75229758	+	Silent	SNP	T	T	C	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_138467.2	+1	validated	p.D247	0.000	331	0%	65	29.2%	18	44.4%	-	-	-	NULL
VCAM1	7412	genome.wustl.edu	37	1	101200075	101200104	+	In_Frame_Del	DEL	AAACTTACAGCTTTTCCTTCTGAGAGTGTC	AAACTTACAGCTTTTCCTTCTGAGAGTGTC	-	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	AAACTTACAGCTTTTCCTTCTGAGAGTGTC	AAACTTACAGCTTTTCCTTCTGAGAGTGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001078.2	+1	reviewed	p.LTAFPSESVK605in_frame_del	0.000:0.000:0.001:0.995:1.000:0.998:0.998:0.994:0.998:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.996:1.000:0.999:0.969:0.956:0.947:0.767:0.774:0.696:0.482:0.571:0.589:0.535	-	-	-	-	-	-	-	-	-	superfamily_Immunoglobulin
ARHGEF11	9826	genome.wustl.edu	37	1	156954218	156954218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_198236.1	-1	reviewed	p.R46C	0.993	38	0%	68	30.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PDZ
SPTA1	6708	genome.wustl.edu	37	1	158641158	158641158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_003126.2	-1	reviewed	p.F525Y	1.000	142	0%	65	41.5%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FMNL2	114793	genome.wustl.edu	37	2	153476066	153476067	+	In_Frame_Ins	INS	-	-	CCA	rs5835439		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_052905.3	+1	reviewed	p.561in_frame_insP	0.918:0.955	-	-	-	-	-	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168105921	168105921	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_152381.4	+1	validated	p.C2673	0.191	118	0%	14	35.7%	0	-	-	-	-	NULL
UGT1A10	54575	genome.wustl.edu	37	2	234545246	234545246	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_019075.2	+1	reviewed	p.G26	0.990	221	0%	127	34.6%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
RPL14	9045	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTGCTG	rs61749576	byFrequency	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001034996.1	+1	reviewed	p.153in_frame_insAA	0.019:0.022	-	-	-	-	-	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	byCluster	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001098209.1	+1	reviewed	p.D32G	1.000	40	0%	67	37.3%	60	11.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMIE	259236	genome.wustl.edu	37	3	46751115	46751115	+	Silent	SNP	A	A	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_147196.2	+1	reviewed	p.T136	0.996	160	0%	292	32.2%	0	-	-	-	-	NULL
ERC2	26059	genome.wustl.edu	37	3	56044602	56044602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015576.1	-1	validated	p.R599C	1.000	540	0%	121	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prefoldin,HMMPfam_Cast
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_006218.2	+1	reviewed	p.E542K	1.000	89	0%	50	28%	1	0%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
NDST4	64579	genome.wustl.edu	37	4	115997437	115997437	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_022569.1	-1	provisional	p.F253fs	0.635	-	-	-	-	-	-	-	-	-	NULL
NDST4	64579	genome.wustl.edu	37	4	115997534	115997534	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_022569.1	-1	provisional	p.W220*	1.000	253	0%	68	23.5%	0	-	-	-	-	NULL
MTMR12	54545	genome.wustl.edu	37	5	32230203	32230203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001040446.1	-1	reviewed	p.R642H	1.000	66	0%	91	39.6%	9	33.3%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	superfamily_(Phosphotyrosine protein) phosphatases II
HEXB	3074	genome.wustl.edu	37	5	73985275	73985275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_000521.3	+1	reviewed	p.P141L	0.998	103	0%	195	12.3%	34	2.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
FAT2	2196	genome.wustl.edu	37	5	150924797	150924797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001447.2	-1	reviewed	p.K1964R	0.002	167	0%	64	17.2%	0	-	benign(0.027)	tolerated(0.17)	neutral(0.060)	HMMSmart_SM00112
KIAA0319	9856	genome.wustl.edu	37	6	24564465	24564465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014809.3	-1	reviewed	p.S799L	0.105	24	0%	51	43.1%	1	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00060
RMND1	55005	genome.wustl.edu	37	6	151738458	151738458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_017909.2	-1	validated	p.Y386H	1.000	183	0%	153	33.3%	27	40.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF155
SCAF8	22828	genome.wustl.edu	37	6	155145385	155145385	+	Silent	SNP	C	C	G	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014892.3	+1	validated	p.A648	0.499	408	0%	131	34.4%	9	33.3%	-	-	-	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44798936	44798936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_031449.3	+1	validated	p.Q290H	1.000	8	0.000	61	0.311	22	27.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZPBP	11055	genome.wustl.edu	37	7	50023093	50023093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_007009.2	-1	validated	p.F269Y	1.000	33	0%	94	39.4%	0	-	benign(0.195)	deleterious(0)	neutral(0.463)	HMMPfam_Sp38
CHRNA2	1135	genome.wustl.edu	37	8	27327369	27327369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_000742.3	-1	reviewed	p.R68Q	0.097	27	0%	98	38.8%	0	-	possibly_damaging(0.516)	tolerated(0.4)	neutral(0.190)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RNF19A	25897	genome.wustl.edu	37	8	101271122	101271122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015435.3	-1	reviewed	p.H727N	1.000	327	0%	148	32.4%	8	12.5%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110986321	110986321	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014379.2	-1	reviewed	p.N99	0.998	6	0.000	42	0.476	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
CDKN2A	1029	genome.wustl.edu	37	9	21971028	21971028	+	Nonsense_Mutation	SNP	C	C	T	rs121913389		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_000077.3	-1	reviewed	p.W110*	0.983	5	0.000	23	0.217	134	25.3%	-	-	-	superfamily_Ankyrin repeat
DCAF10	79269	genome.wustl.edu	37	9	37861385	37861385	+	Silent	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_024345.3	+1	validated	p.V520	1.000	192	0%	97	27.8%	8	62.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MUSK	4593	genome.wustl.edu	37	9	113547894	113547894	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_005592.3	+1	reviewed	p.P558	0.993	137	0%	230	33.5%	1	0%	-	-	-	NULL
KIF12	113220	genome.wustl.edu	37	9	116860020	116860020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000259410	-1	known	p.G121E	0.698	47	0%	108	35.2%	22	45.4%	possibly_damaging(0.865)	tolerated(0.09)	deleterious(0.631)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
PTCHD3	374308	genome.wustl.edu	37	10	27703174	27703174	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001034842.3	-1	validated	p.P2	0.000	10	0%	29	37.9%	0	-	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	49931532	49931532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_020945.1	+1	validated	p.L171I	1.000	100	0%	141	29.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692787	89692787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000371953	+1	known	p.E91*	1.000	411	0%	137	27%	13	7.6%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000371953	+1	known	p.R130G	1.000	353	0%	101	32.7%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
MADD	8567	genome.wustl.edu	37	11	47303965	47303965	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_003682.3	+1	reviewed	p.N501	1.000	96	0%	151	35.1%	4	75%	-	-	-	HMMPfam_dDENN,HMMSmart_SM00801
OR8H2	390151	genome.wustl.edu	37	11	55873414	55873414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001005200.1	+1	provisional	p.N299I	0.227	155	0%	76	34.2%	0	-	possibly_damaging(0.701)	tolerated(0.1)	deleterious(0.538)	superfamily_SSF81321
CDCA5	113130	genome.wustl.edu	37	11	64846705	64846705	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000404147	-1	known	p.H266	0.000	84	0%	130	38.5%	0	-	-	-	-	NULL
C11orf80	79703	genome.wustl.edu	37	11	66512290	66512291	+	In_Frame_Ins	INS	-	-	GGC	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_024650.3	+1	validated	p.30in_frame_insA	0.001:0.003	-	-	-	-	-	-	-	-	-	NULL
CPT1A	1374	genome.wustl.edu	37	11	68527038	68527038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001876.3	-1	reviewed	p.T745M	1.000	41	0%	89	33.7%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
USP35	57558	genome.wustl.edu	37	11	77919935	77919935	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_020798.2	+1	provisional	p.S506	0.998	71	0%	125	30.4%	4	25%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
KIAA1731	85459	genome.wustl.edu	37	11	93400895	93400895	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_033395.1	+1	validated	p.Q77	1.000	94	0%	57	33.3%	1	100%	-	-	-	NULL
CADM1	23705	genome.wustl.edu	37	11	115102158	115102158	+	Silent	SNP	A	A	G	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014333.3	-1	validated	p.G159	0.000	235	0%	156	29.5%	57	35%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
CHD4	1108	genome.wustl.edu	37	12	6697522	6697522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001273.2	-1	reviewed	p.A1136D	1.000	128	0.8%	134	41%	17	23.5%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26755312	26755312	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_002223.2	-1	validated	p.P1223	0.957	140	0%	32	56.2%	0	-	-	-	-	HMMPfam_RYDR_ITPR
GPR182	11318	genome.wustl.edu	37	12	57389718	57389718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_007264.3	+1	reviewed	p.A242V	0.991	118	0%	93	41.9%	0	-	benign(0.181)	deleterious(0.02)	neutral(0.400)	HMMPfam_7tm_1,superfamily_SSF81321
FGD6	55785	genome.wustl.edu	37	12	95604391	95604391	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_018351.3	-1	validated	p.A223	0.000	103	0%	95	30.5%	1	0%	-	-	-	NULL
SELPLG	6404	genome.wustl.edu	37	12	109017667	109017667	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000228463	-1	known	p.T139	0.000	310	2.6%	525	24.4%	0	-	-	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122265902	122265902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015048.1	+1	validated	p.R1842W	1.000	165	0%	204	30.9%	17	11.7%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
SETD1B	23067	genome.wustl.edu	37	12	122265929	122265929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015048.1	+1	validated	p.A1851T	1.000	125	0%	162	32.1%	15	20%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
ZNF268	10795	genome.wustl.edu	37	12	133779972	133779972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_003415.2	+1	validated	p.R567Q	0.000	116	0%	80	40%	0	-	benign(0.067)	tolerated(0.4)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GAS6	2621	genome.wustl.edu	37	13	114530024	114530024	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_000820.2	-1	reviewed	p.T474	0.000	13	0%	121	36.4%	253	1.9%	-	-	-	superfamily_ConA_like_lec_gl
OR4K5	79317	genome.wustl.edu	37	14	20389327	20389327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001005483.1	+1	provisional	p.A188S	0.329	1150	0%	273	10.6%	0	-	benign(0.036)	deleterious(0.03)	neutral(0.366)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000136315	0	genome.wustl.edu	37	14	21388172	21388172	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000258817	+1	known	p.A124	0.000	207	0%	75	29.3%	3	0%	-	-	-	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
FLRT2	23768	genome.wustl.edu	37	14	86089691	86089691	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_013231.4	+1	reviewed	p.S611	1.000	27	0%	38	36.8%	0	-	-	-	-	NULL
BCL11B	64919	genome.wustl.edu	37	14	99641793	99641793	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_138576.2	-1	reviewed	p.C460	1.000	10	0%	26	23.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM62	80021	genome.wustl.edu	37	15	43476493	43476493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_024956.3	+1	provisional	p.M547I	1.000	142	0%	355	34.9%	16	25%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ADAMTS7	11173	genome.wustl.edu	37	15	79058987	79058987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014272.3	-1	reviewed	p.A1089V	0.000	8	0.000	112	0.366	9	33.3%	benign(0)	tolerated(1)	-	NULL
ABCA3	21	genome.wustl.edu	37	16	2334851	2334851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001089.2	-1	reviewed	p.T1211M	0.832	18	0%	99	33.3%	4	0%	probably_damaging(0.967)	deleterious(0.04)	deleterious(0.758)	NULL
ZNF213	7760	genome.wustl.edu	37	16	3190884	3190884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001134655.1	+1	validated	p.R306C	0.708	6	0.000	16	0.375	8	12.5%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
C17orf81	23587	genome.wustl.edu	37	17	7158018	7158018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015362.3	+1	validated	p.P118L	0.464	52	0%	138	37%	149	26.8%	probably_damaging(0.954)	deleterious(0.04)	deleterious(0.746)	HMMPfam_Hap2_elong
SARM1	23098	genome.wustl.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136	byCluster;by1000genomes	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000379061	+1	known	p.A104fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
CDH7	1005	genome.wustl.edu	37	18	63511085	63511085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_004361.2	+1	reviewed	p.R340Q	0.133	131	0%	48	27.1%	0	-	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
UBA52	7311	genome.wustl.edu	37	19	18684492	18684492	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_001033930.1	+1	reviewed	p.R42G	1.000	78	0%	124	33.1%	2882	33.9%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_UBIQUITIN_1,superfamily_Ubiquitin-like
HPN	3249	genome.wustl.edu	37	19	35551550	35551550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_002151.2	+1	reviewed	p.R214G	0.111	16	0%	77	35.1%	33	51.5%	possibly_damaging(0.945)	tolerated(0.16)	neutral(0.449)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MLL4	9757	genome.wustl.edu	37	19	36210381	36210381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014727.1	+1	reviewed	p.G125D	1.000	78	0%	246	33.3%	0	-	unknown(0)	-	-	NULL
RDH13	112724	genome.wustl.edu	37	19	55568131	55568131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_138412.3	-1	reviewed	p.A6V	0.562	54	0%	141	40.4%	8	37.5%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_NAD(P)-binding Rossmann-fold domains
COX6B2	125965	genome.wustl.edu	37	19	55865140	55865140	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_144613.4	-1	validated	p.V72	0.997	76	0%	95	31.6%	2	0%	-	-	-	HMMPfam_COX6B,superfamily_Cyt_c_oxidase_6B
NLRP8	126205	genome.wustl.edu	37	19	56466488	56466488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_176811.2	+1	provisional	p.P355L	0.001	138	0%	99	40.4%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_NACHT
LOC729057	729057	genome.wustl.edu	37	22	16123203	16123203	+	RNA	SNP	T	T	C	rs7292373	byCluster;by2Hit2Allele	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	XR_042044.2	+1	model	NULL	0.969	68	0%	256	9.4%	12	0%	-	-	-	-
CLTCL1	8218	genome.wustl.edu	37	22	19168259	19168259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_007098.3	-1	reviewed	p.A1630S	0.000	18	0%	123	25.2%	7	28.5%	benign(0.004)	tolerated(0.35)	neutral(0.021)	NULL
MN1	4330	genome.wustl.edu	37	22	28193835	28193835	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_002430.2	-1	reviewed	p.S899	0.868	14	0%	45	37.8%	0	-	-	-	-	NULL
CARD10	29775	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-	rs113275238	byCluster;by1000genomes	TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	CTCCTT	CTCCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_014550.3	-1	reviewed	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	-	-	-	-	-	-	-	-	-	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44328899	44328899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_025225.2	+1	reviewed	p.L210F	0.100	82	0%	198	33.3%	2	50%	benign(0.359)	tolerated(0.06)	neutral(0.436)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	943	943	+	RNA	SNP	G	G	C	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000389680	+1	known	NULL	NULL	48	0%	47	74.5%	5363	63.2%	-	-	-	-
WAS	7454	genome.wustl.edu	37	X	48545265	48545265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_000377.2	+1	reviewed	p.G219*	0.014	122	0%	182	35.7%	16	0%	-	-	-	NULL
PQBP1	10084	genome.wustl.edu	37	X	48759802	48759802	+	Silent	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	ENST00000376548	+1	known	p.L195	0.045	47	0%	46	34.8%	4	0%	-	-	-	NULL
ARHGEF9	23229	genome.wustl.edu	37	X	62917005	62917005	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_015185.2	-1	reviewed	p.H187	0.977	272	0%	97	38.1%	4	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MAP7D3	79649	genome.wustl.edu	37	X	135313917	135313917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CB-01A-32D-A10B-09	TCGA-BK-A0CB-10A-05W-A10C-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1d968ad6-345d-4432-a992-47163d027a46	e43ef24c-f60f-40df-80a5-a997bcac0284	NM_024597.3	-1	reviewed	p.A400E	0.000	101	1%	76	23.7%	1	0%	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
