Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOC2L	26155	genome.wustl.edu	37	1	881643	881643	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015658.3	-1	validated	p.R609	0.022	104	0%	88	34.1%	126	50.7%	-	-	-	HMMPfam_Noc2
NOC2L	26155	genome.wustl.edu	37	1	887838	887838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015658.3	-1	validated	p.R382H	1.000	90	0%	50	34%	117	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Noc2
AGRN	375790	genome.wustl.edu	37	1	981121	981121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_198576.2	+1	validated	p.C849G	1.000	69	0%	38	39.5%	66	43.9%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
TPRG1L	127262	genome.wustl.edu	37	1	3545047	3545047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_182752.3	+1	validated	p.A233	0.020	211	0%	180	31.7%	25	40%	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
PHF13	148479	genome.wustl.edu	37	1	6680059	6680059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_153812.2	+1	validated	p.T113M	0.943	59	0%	41	29.3%	34	35.2%	possibly_damaging(0.864)	tolerated(0.11)	deleterious(0.606)	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9795068	9795068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001009566.1	-1	validated	p.R683H	0.983	131	0%	74	37.8%	355	49%	possibly_damaging(0.732)	tolerated(0.23)	neutral(0.309)	NULL
C1orf187	374946	genome.wustl.edu	37	1	11775193	11775193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_198545.3	+1	validated	p.R289W	0.981	89	0%	63	41.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPEN	23013	genome.wustl.edu	37	1	16256081	16256081	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015001.2	+1	reviewed	p.L1116	0.846	104	0%	101	35.6%	6	50%	-	-	-	NULL
ECE1	1889	genome.wustl.edu	37	1	21582519	21582519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001397.2	-1	reviewed	p.L314P	1.000	117	0.9%	79	31.6%	43	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
CEP85	64793	genome.wustl.edu	37	1	26584671	26584671	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022778.2	+1	provisional	p.R359*	0.627	108	0%	89	36%	3	0%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107013	27107013	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006015.4	+1	reviewed	p.Q2209fs	1.000	-	-	-	-	-	-	-	-	-	NULL
GJB3	2707	genome.wustl.edu	37	1	35250673	35250673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001005752.1	+1	reviewed	p.R104W	0.000	224	0%	163	39.9%	41	48.7%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Connexin
PSMB2	5690	genome.wustl.edu	37	1	36074873	36074873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002794.3	-1	reviewed	p.S141T	1.000	104	0%	93	50.5%	538	43.4%	benign(0.216)	tolerated(0.05)	neutral(0.366)	HMMPfam_Proteasome,superfamily_SSF56235
GNL2	29889	genome.wustl.edu	37	1	38034731	38034731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_013285.2	-1	validated	p.R530Q	0.999	420	0%	349	35.2%	90	48.8%	possibly_damaging(0.706)	tolerated(0.09)	deleterious(0.550)	NULL
MACF1	23499	genome.wustl.edu	37	1	39750879	39750879	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012090.3	+1	reviewed	p.E424G	1.000	494	0%	399	39.6%	1	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39835816	39835817	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033044.2	+1	reviewed	p.M2792fs	0.999:0.997	-	-	-	-	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
PTPRF	5792	genome.wustl.edu	37	1	44083455	44083455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002840.3	+1	reviewed	p.R1415H	1.000	74	0%	49	40.8%	290	47.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
KDM4A	9682	genome.wustl.edu	37	1	44133482	44133482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014663.2	+1	reviewed	p.V319M	1.000	171	0%	146	37%	44	43.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BTBD19	149478	genome.wustl.edu	37	1	45275994	45275994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001136537.1	+1	provisional	p.P66T	0.000	124	0%	98	31.6%	1	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
MIER1	57708	genome.wustl.edu	37	1	67390729	67390729	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000401041	+1	known	p.S6	1.000	22	0%	15	33.3%	0	-	-	-	-	NULL
SLC35D1	23169	genome.wustl.edu	37	1	67486115	67486115	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015139.2	-1	reviewed	p.Y271	0.302	361	0.3%	334	30.5%	5	20%	-	-	-	HMMPfam_TPT
NEXN	91624	genome.wustl.edu	37	1	78408166	78408166	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000342754	+1	known	p.R460K	0.088	164	0%	148	39.9%	11	63.6%	-	-	-	NULL
GBP1	2633	genome.wustl.edu	37	1	89519075	89519075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002053.2	-1	validated	p.T581M	0.000	790	0%	667	31.2%	14	21.4%	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
SORT1	6272	genome.wustl.edu	37	1	109910071	109910071	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002959.4	-1	reviewed	p.P133	1.000	370	0%	369	41.5%	26	57.6%	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
FAM40A	85369	genome.wustl.edu	37	1	110596374	110596374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033088.2	+1	validated	p.R785Q	1.000	96	1%	75	33.3%	46	52.1%	benign(0.097)	tolerated(0.32)	neutral(0.032)	NULL
OVGP1	5016	genome.wustl.edu	37	1	111969400	111969400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000369728	-1	known	p.E15D	0.000	28	0%	34	41.2%	1	100%	benign(0.007)	tolerated(0.43)	neutral(0.013)	NULL
PHTF1	10745	genome.wustl.edu	37	1	114246778	114246778	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006608.2	-1	validated	p.P605	0.000	242	0%	185	29.2%	28	50%	-	-	-	NULL
MIR942	100126331	genome.wustl.edu	37	1	117637326	117637326	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000401111	+1	known	NULL	0.013	166	0.6%	160	38.8%	0	-	-	-	-	-
HSD3B2	3284	genome.wustl.edu	37	1	119964900	119964900	+	Missense_Mutation	SNP	C	C	T	rs80358221	byCluster	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000198.3	+1	reviewed	p.T259M	0.998	172	0.6%	206	37.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
ANKRD35	148741	genome.wustl.edu	37	1	145561263	145561263	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144698.3	+1	validated	p.V317	0.000	193	0%	120	33.3%	0	-	-	-	-	NULL
GJA8	2703	genome.wustl.edu	37	1	147381051	147381051	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005267.4	+1	reviewed	p.Y323	0.956	96	0%	67	34.3%	0	-	-	-	-	HMMPfam_Connexin50
PYHIN1	149628	genome.wustl.edu	37	1	158913599	158913599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_152501.3	+1	validated	p.T341M	0.000	188	0.5%	242	32.2%	0	-	probably_damaging(0.995)	tolerated(0.21)	deleterious(0.502)	HMMPfam_HIN
C1orf9	51430	genome.wustl.edu	37	1	172558838	172558840	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014283.3	+1	validated	p.E869in_frame_del	0.997:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SEC16B	89866	genome.wustl.edu	37	1	177927348	177927348	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033127.2	-1	validated	p.T428	0.002	61	0%	59	33.9%	0	-	-	-	-	NULL
FAIM3	9214	genome.wustl.edu	37	1	207087164	207087164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001142472.1	-1	validated	p.G105R	0.999	227	0%	201	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF678	339500	genome.wustl.edu	37	1	227842419	227842419	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_178549.3	+1	validated	p.D156	0.056	112	0%	130	34.6%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OBSCN	84033	genome.wustl.edu	37	1	228471333	228471333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001098623.1	+1	reviewed	p.R2956Q	0.002	37	0%	27	44.4%	4	0%	possibly_damaging(0.626)	tolerated(0.32)	neutral(0.242)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TTC13	79573	genome.wustl.edu	37	1	231079565	231079565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024525.4	-1	validated	p.E220A	1.000	261	0%	239	34.3%	1	100%	probably_damaging(0.979)	tolerated(0.15)	deleterious(0.663)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ARV1	64801	genome.wustl.edu	37	1	231132895	231132897	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022786.1	+1	provisional	p.F235in_frame_del	0.438:0.413:0.413	-	-	-	-	-	-	-	-	-	HMMPfam_Arv1
PCNXL2	80003	genome.wustl.edu	37	1	233122155	233122155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014801.3	-1	provisional	p.E1975K	0.551	15	0%	12	58.3%	6	50%	benign(0.005)	tolerated(0.3)	neutral(0.029)	NULL
GGPS1	9453	genome.wustl.edu	37	1	235505709	235505709	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001037277.1	+1	reviewed	p.P175	0.928	305	0%	356	32.6%	36	52.7%	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth
LYST	1130	genome.wustl.edu	37	1	235955081	235955081	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000081.2	-1	reviewed	p.A1487	0.926	352	0.3%	358	34.9%	1	100%	-	-	-	NULL
CHRM3	1131	genome.wustl.edu	37	1	240071723	240071723	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000740.2	+1	reviewed	p.S324	0.000	41	0%	29	51.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M5	127059	genome.wustl.edu	37	1	248308665	248308665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001004690.1	+1	provisional	p.M72I	0.000	879	0%	655	38.9%	0	-	benign(0.038)	tolerated(0.06)	neutral(0.325)	HMMPfam_7tm_1,superfamily_SSF81321
BIRC6	57448	genome.wustl.edu	37	2	32667448	32667448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016252.3	+1	reviewed	p.I1388S	0.998	472	0%	466	32.6%	6	83.3%	benign(0.318)	deleterious(0)	deleterious(0.544)	NULL
THADA	63892	genome.wustl.edu	37	2	43547622	43547622	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001083953.1	-1	validated	p.T1467	0.079	301	0%	382	17%	14	0%	-	-	-	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61009087	61009087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022894.2	+1	reviewed	p.T325M	1.000	415	0%	372	33.3%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_central,superfamily_PAP/OAS1 substrate-binding domain
B3GNT2	10678	genome.wustl.edu	37	2	62449434	62449434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006577.5	+1	reviewed	p.V27I	1.000	132	0%	176	36.9%	13	30.7%	possibly_damaging(0.537)	tolerated(0.16)	neutral(0.241)	NULL
LOC100129162	100129162	genome.wustl.edu	37	2	62780234	62780234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_001725437.1	-1	model	p.S146P	1.000	55	0%	57	17.5%	0	-	-	-	-	NULL
AAK1	22848	genome.wustl.edu	37	2	69747973	69747973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014911.3	-1	reviewed	p.Q401H	0.953	233	0%	193	34.2%	7	42.8%	benign(0.127)	tolerated(0.25)	neutral(0.048)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74594978	74594978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004082.3	-1	reviewed	p.C677R	1.000	122	0%	84	42.9%	132	46.2%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
LOXL3	84695	genome.wustl.edu	37	2	74761840	74761840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_032603.2	-1	reviewed	p.R547	0.997	84	0%	51	39.2%	6	33.3%	-	-	-	HMMPfam_Lysyl_oxidase
LIMS1	3987	genome.wustl.edu	37	2	109276096	109276096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004987.3	+1	reviewed	p.E11G	1.000	278	0%	193	22.3%	22	18.1%	benign(0.002)	tolerated(0.34)	neutral(0.023)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
SH3RF3	344558	genome.wustl.edu	37	2	110015380	110015380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000309415	+1	known	p.S427L	1.000	55	0%	37	35.1%	3	33.3%	benign(0.044)	deleterious(0.03)	neutral(0.367)	NULL
EN1	2019	genome.wustl.edu	37	2	119600779	119600779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001426.3	-1	reviewed	p.R305Q	1.000	88	0%	47	40.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
PPIG	9360	genome.wustl.edu	37	2	170493461	170493461	+	Nonsense_Mutation	SNP	C	C	T	rs188830723	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004792.2	+1	validated	p.R565*	0.996	335	0%	348	12.9%	51	3.9%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196673491	196673491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018897.2	-1	validated	p.R3333Q	0.999	399	0%	375	40.5%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Dynein_heavy
ALS2CR11	151254	genome.wustl.edu	37	2	202356743	202356743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000439140	-1	known	p.E1441K	0.041	502	0.2%	518	36.9%	0	-	benign(0.141)	tolerated(0.06)	neutral(0.335)	NULL
NDUFS1	4719	genome.wustl.edu	37	2	207006794	207006794	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005006.5	-1	reviewed	e11-1	1.000	166	0%	169	34.3%	0	-	-	-	-	-
ABCB6	10058	genome.wustl.edu	37	2	220074723	220074723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005689.1	-1	reviewed	p.W822*	1.000	297	0%	224	40.2%	51	47%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHPF	79586	genome.wustl.edu	37	2	220404225	220404225	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024536.5	-1	validated	p.C736	1.000	22	0%	18	33.3%	269	42.3%	-	-	-	HMMPfam_CHGN
STK11IP	114790	genome.wustl.edu	37	2	220472845	220472845	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000456909	+1	known	p.Q432	1.000	60	0%	32	31.2%	12	33.3%	-	-	-	NULL
CAPN10	11132	genome.wustl.edu	37	2	241534025	241534025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_023083.2	+1	reviewed	p.G299E	0.999	211	0%	124	29%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
SUMF1	285362	genome.wustl.edu	37	3	4494608	4494608	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_182760.3	-1	reviewed	p.S132	0.999	215	0%	254	38.2%	31	61.2%	-	-	-	HMMPfam_DUF323
GRIP2	80852	genome.wustl.edu	37	3	14559309	14559309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001080423.1	-1	provisional	p.A474V	0.523	19	0%	15	40%	0	-	-	-	-	NULL
AZI2	64343	genome.wustl.edu	37	3	28373868	28373868	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000429369	-1	known	p.H11Y	0.996	684	0%	608	34.5%	47	34%	-	-	-	NULL
DCLK3	85443	genome.wustl.edu	37	3	36779893	36779893	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033403.1	-1	validated	p.D86	0.045	307	0%	205	29.3%	0	-	-	-	-	NULL
SLC22A13	9390	genome.wustl.edu	37	3	38318438	38318438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004256.3	+1	reviewed	p.R461Q	0.995	55	0%	43	44.2%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
NKTR	4820	genome.wustl.edu	37	3	42679241	42679241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005385.3	+1	reviewed	p.S682I	0.934	185	0%	206	36.4%	2	50%	unknown(0)	deleterious(0)	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49160347	49160347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002292.3	-1	reviewed	p.R1455W	1.000	30	0%	25	40%	188	39.8%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51459868	51459868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014703.2	-1	validated	p.R568H	1.000	275	0%	274	33.9%	14	50%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	superfamily_ARM repeat
PTPRG	5793	genome.wustl.edu	37	3	62257126	62257126	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002841.3	+1	reviewed	p.W1026*	1.000	240	0%	168	29.8%	8	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MITF	4286	genome.wustl.edu	37	3	69928478	69928478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_198159.2	+1	reviewed	p.V100I	1.000	142	0%	98	34.7%	6	0%	probably_damaging(0.975)	tolerated(0.19)	neutral(0.466)	NULL
PARP9	83666	genome.wustl.edu	37	3	122247461	122247461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_031458.2	-1	validated	p.C772F	0.891	197	0%	165	40.6%	27	40.7%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_PARP,superfamily_ADP-ribosylation
ITGB5	3693	genome.wustl.edu	37	3	124485152	124485152	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000481591	-1	known	p.P376L	0.886	97	0%	73	41.1%	94	47.8%	-	-	-	HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain
C3orf37	56941	genome.wustl.edu	37	3	129020942	129020942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001006109.1	+1	validated	p.N262S	1.000	272	0%	208	35.1%	122	44.2%	benign(0.052)	tolerated(0.17)	neutral(0.062)	HMMPfam_DUF159
COL6A6	131873	genome.wustl.edu	37	3	130286032	130286032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001102608.1	+1	provisional	p.V590A	0.220	27	0%	16	50%	0	-	probably_damaging(0.956)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ATR	545	ucsc.edu	37	3	142281435	142281435	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001184.3	-1	reviewed	p.F270fs	1	-	-	-	-	-	-	-	-	-	NULL
MME	4311	genome.wustl.edu	37	3	154802023	154802023	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000902.3	+1	reviewed	p.R23*	0.674	185	0.5%	174	39.1%	1	0%	-	-	-	NULL
GMPS	8833	genome.wustl.edu	37	3	155611478	155611478	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003875.2	+1	reviewed	p.Q67*	1.000	215	0%	211	13.3%	55	1.8%	-	-	-	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
IQCJ	654502	genome.wustl.edu	37	3	158983136	158983136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001042705.1	+1	provisional	p.I142V	0.000	290	0%	217	30.4%	0	-	unknown(0)	deleterious(0)	-	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193081072	193081072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_198505.2	-1	provisional	p.D113N	0.996	146	0.7%	123	35.8%	0	-	benign(0.293)	tolerated(0.46)	neutral(0.102)	NULL
MUC4	4585	genome.wustl.edu	37	3	195506692	195506692	+	Missense_Mutation	SNP	C	C	T	rs142466346	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018406.5	-1	reviewed	p.R3792H	0.890	11	0%	11	36.4%	0	-	possibly_damaging(0.924)	-	-	NULL
DOK7	285489	genome.wustl.edu	37	4	3494523	3494524	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173660.4	+1	reviewed	p.H272fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PI4K2B	55300	genome.wustl.edu	37	4	25270094	25270094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018323.3	+1	validated	p.A370T	1.000	332	0%	332	36.4%	20	55%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_PI3_PI4_kinase
GABRG1	2565	genome.wustl.edu	37	4	46066480	46066480	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173536.3	-1	reviewed	p.S201	0.893	194	0%	201	33.8%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL
ALB	213	genome.wustl.edu	37	4	74283813	74283813	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000477.5	+1	reviewed	p.V480fs	0.000	-	-	-	-	-	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ENSG00000207307	0	genome.wustl.edu	37	4	77453415	77453415	+	RNA	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000384577	-1	novel	NULL	0.015	639	0%	483	37.9%	0	-	-	-	-	-
MANBA	4126	genome.wustl.edu	37	4	103560923	103560923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005908.3	-1	reviewed	p.A654V	1.000	246	0%	175	33.1%	27	48.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Glyco_hydro_cat
KIAA1109	84162	genome.wustl.edu	37	4	123280876	123280876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015312.3	+1	reviewed	p.R4934G	0.991	299	0%	335	35.8%	30	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FSA_C
SCLT1	132320	genome.wustl.edu	37	4	129924975	129924975	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144643.2	-1	validated	p.G116fs	0.240	-	-	-	-	-	-	-	-	-	NULL
SCLT1	132320	genome.wustl.edu	37	4	129924979	129924979	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144643.2	-1	validated	p.L115	0.759	629	0%	505	32.3%	2	0%	-	-	-	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561189	147561189	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004575.2	+1	validated	p.A153	0.981	245	0%	123	48%	0	-	-	-	-	NULL
ARFIP1	27236	genome.wustl.edu	37	4	153803924	153803925	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001025595.1	+1	validated	p.E229fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Arfaptin
TLL1	7092	genome.wustl.edu	37	4	166795122	166795122	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012464.3	+1	reviewed	p.Y22	0.621	401	0%	239	38.5%	0	-	-	-	-	NULL
SPOCK3	50859	genome.wustl.edu	37	4	167656103	167656103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016950.2	-1	validated	p.D427G	1.000	823	0.1%	715	34.5%	1	0%	unknown(0)	-	-	NULL
NEIL3	55247	genome.wustl.edu	37	4	178283539	178283539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018248.2	+1	validated	p.V578M	1.000	266	0%	296	35.5%	9	44.4%	possibly_damaging(0.433)	deleterious(0.04)	deleterious(0.490)	HMMPfam_zf-GRF
CEP72	55722	genome.wustl.edu	37	5	633964	633964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018140.3	+1	reviewed	p.L198P	1.000	54	0%	39	25.6%	6	66.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13810220	13810220	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001369.2	-1	reviewed	p.P2519	0.000	10	0%	12	33.3%	0	-	-	-	-	NULL
NIPBL	25836	genome.wustl.edu	37	5	37057296	37057296	+	Silent	SNP	C	C	T	rs113988530		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_133433.3	+1	reviewed	p.D2424	1.000	290	0.3%	317	38.5%	40	40%	-	-	-	superfamily_ARM repeat
SNX18	112574	genome.wustl.edu	37	5	53815028	53815028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_052870.2	+1	reviewed	p.A416T	0.969	61	0%	33	36.4%	12	58.3%	benign(0.186)	tolerated(0.13)	neutral(0.270)	HMMPfam_BAR_3_WASP_bdg
ZSWIM6	57688	genome.wustl.edu	37	5	60840057	60840057	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020928.1	+1	provisional	p.I1187	1.000	207	0%	175	32.6%	11	63.6%	-	-	-	NULL
MAST4	375449	genome.wustl.edu	37	5	66448632	66448632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015183.2	+1	validated	p.I966V	1.000	129	0%	114	41.2%	6	83.3%	benign(0.088)	tolerated(0.22)	neutral(0.049)	HMMSmart_PDZ,superfamily_PDZ
MAST4	375449	genome.wustl.edu	37	5	66460440	66460440	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000443808	+1	known	p.R868W	0.248	147	0%	100	31%	8	62.5%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589605	67589616	+	In_Frame_Del	DEL	TCAAGAAAAAAG	TCAAGAAAAAAG	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	TCAAGAAAAAAG	TCAAGAAAAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_181523.1	+1	reviewed	p.QEKS457in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591246	67591246	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_181523.1	+1	reviewed	e13-2	1.000	595	0%	584	34.9%	1	100%	-	-	-	-
FAM172A	83989	genome.wustl.edu	37	5	93386436	93386436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_032042.5	-1	validated	p.E103D	1.000	428	0%	467	19.5%	8	0%	benign(0.354)	tolerated(0.55)	neutral(0.119)	HMMPfam_Arb2
MCTP1	79772	genome.wustl.edu	37	5	94245014	94245016	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024717.4	-1	validated	p.G531in_frame_del	0.932:0.946:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NUDT12	83594	genome.wustl.edu	37	5	102890502	102890502	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_031438.2	-1	validated	p.L339	1.000	249	0%	221	38.5%	8	75%	-	-	-	HMMPfam_NUDIX,superfamily_Nudix
SEMA6A	57556	genome.wustl.edu	37	5	115783391	115783391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020796.3	-1	validated	p.Y671H	1.000	59	0%	45	31.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIL1	64374	genome.wustl.edu	37	5	138282969	138282969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001037633.1	-1	reviewed	p.C408Y	1.000	34	0%	19	42.1%	135	28.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
SLC4A9	83697	genome.wustl.edu	37	5	139743767	139743767	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_031467.2	+1	validated	p.F461	1.000	58	0%	48	31.2%	0	-	-	-	-	HMMPfam_HCO3_cotransp
PCDHA11	56138	genome.wustl.edu	37	5	140250915	140250915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018902.3	+1	reviewed	p.A743T	1.000	79	0%	67	29.9%	0	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140481934	140481934	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018937.2	+1	reviewed	p.N567	0.994	38	0%	22	31.8%	7	0%	-	-	-	superfamily_Cadherin-like
PCDHB18	54660	genome.wustl.edu	37	5	140616256	140616256	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000274705	+1	known	p.A657	0.001	112	0%	87	37.9%	0	-	-	-	-	NULL
PCDHGA1	56114	genome.wustl.edu	37	5	140712338	140712338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018912.2	+1	reviewed	p.A696V	0.999	145	0%	75	37.3%	4	25%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
TCOF1	6949	genome.wustl.edu	37	5	149751628	149751628	+	Silent	SNP	T	T	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001135243.1	+1	reviewed	p.S233	0.002	109	0%	87	47.1%	15	40%	-	-	-	NULL
RNF145	153830	genome.wustl.edu	37	5	158585745	158585745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144726.1	-1	provisional	p.G670V	0.557	204	0%	196	39.3%	115	46.9%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
ODZ2	57451	genome.wustl.edu	37	5	166802426	166802426	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001122679.1	+1	inferred	p.S150	0.002	67	0%	41	36.6%	0	-	-	-	-	HMMPfam_Ten_N
FGFR4	2264	genome.wustl.edu	37	5	176522358	176522358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002011.3	+1	reviewed	p.D516G	1.000	105	0%	54	27.8%	4	25%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RAB24	53917	genome.wustl.edu	37	5	176729591	176729591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001031677.2	-1	validated	p.R107H	0.998	215	0%	168	31.5%	47	48.9%	benign(0.026)	tolerated(0.07)	neutral(0.320)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
F12	2161	genome.wustl.edu	37	5	176836063	176836063	+	Silent	SNP	A	A	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000505.3	-1	reviewed	p.A33	0.000	211	0%	140	40.7%	0	-	-	-	-	NULL
N4BP3	23138	genome.wustl.edu	37	5	177547538	177547538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015111.1	+1	validated	p.K230N	1.000	16	0%	11	45.5%	3	66.6%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	NULL
OR2Y1	134083	genome.wustl.edu	37	5	180166695	180166695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001001657.1	-1	provisional	p.R122C	1.000	81	0%	66	28.8%	0	-	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
TRIM41	90933	genome.wustl.edu	37	5	180651512	180651512	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000503114	+1	known	p.C152Y	0.653	143	0%	85	29.4%	17	47%	-	-	-	superfamily_RING/U-box
TRIM52	84851	genome.wustl.edu	37	5	180687617	180687617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_032765.2	-1	provisional	p.E66D	0.000	86	0%	86	38.4%	3	100%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMSmart_RING,superfamily_SSF57850
RIPK1	8737	genome.wustl.edu	37	6	3105900	3105900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000453483	+1	known	p.S28N	0.000	130	0%	102	32.4%	10	60%	unknown(0)	-	-	NULL
BPHL	670	genome.wustl.edu	37	6	3140661	3140661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004332.2	+1	reviewed	p.A236T	1.000	124	0%	72	29.2%	58	34.4%	benign(0)	tolerated(1)	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
DSP	1832	genome.wustl.edu	37	6	7559503	7559503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004415.2	+1	reviewed	p.I156T	1.000	192	0%	130	10%	47	40.4%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	superfamily_Spectrin repeat
HIST1H1T	3010	genome.wustl.edu	37	6	26108311	26108311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005323.3	-1	reviewed	p.T4I	0.967	77	0%	61	39.3%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
HIST1H2BM	8342	genome.wustl.edu	37	6	27783066	27783066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003521.2	+1	reviewed	p.A82V	1.000	266	0%	176	40.9%	0	-	benign(0.006)	tolerated(0.06)	neutral(0.323)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
BAG6	7917	genome.wustl.edu	37	6	31610655	31610655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004639.3	-1	reviewed	p.A635V	1.000	54	0%	63	31.7%	79	54.4%	possibly_damaging(0.606)	tolerated(0.07)	deleterious(0.529)	NULL
MSH5	4439	genome.wustl.edu	37	6	31711941	31711941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_025259.5	+1	reviewed	p.P188Q	0.077	155	0%	172	38.4%	0	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
SYNGAP1	8831	genome.wustl.edu	37	6	33415704	33415704	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006772.2	+1	reviewed	p.D1293	1.000	68	0%	57	36.8%	7	71.4%	-	-	-	NULL
FOXP4	116113	genome.wustl.edu	37	6	41562671	41562671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001012426.1	+1	reviewed	p.A534T	1.000	121	0%	90	33.3%	67	43.2%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
PPP2R5D	5528	genome.wustl.edu	37	6	42977070	42977070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006245.2	+1	reviewed	p.R421H	1.000	108	0%	101	30.7%	79	54.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56
FAM83B	222584	genome.wustl.edu	37	6	54806666	54806666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001010872.1	+1	validated	p.A966V	0.041	174	0%	179	33.5%	8	0%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
GFRAL	389400	genome.wustl.edu	37	6	55216163	55216163	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_207410.2	+1	validated	p.P161	0.724	444	0%	383	38.1%	0	-	-	-	-	HMMPfam_GDNF,superfamily_SSF110035
KLHL32	114792	genome.wustl.edu	37	6	97562270	97562270	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_052904.3	+1	validated	p.L413	1.000	118	0.8%	87	40.2%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
AIM1	202	genome.wustl.edu	37	6	106968337	106968337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001624.2	+1	validated	p.A677V	0.553	76	0%	83	39.8%	1	100%	possibly_damaging(0.471)	deleterious(0)	deleterious(0.600)	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109787239	109787239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014797.2	-1	validated	p.V637M	0.997	342	0%	195	32.8%	8	37.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119399395	119399395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024581.4	-1	validated	p.P24S	0.873	20	0%	14	28.6%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
SOGA3	387104	genome.wustl.edu	37	6	127797206	127797206	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001012279.2	-1	validated	p.E655	0.998	102	1%	85	47.1%	1	100%	-	-	-	NULL
C6orf97	80129	genome.wustl.edu	37	6	151917521	151917521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_025059.3	+1	validated	p.L507I	0.993	101	1%	80	17.5%	1	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
ARID1B	57492	genome.wustl.edu	37	6	157520006	157520006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_017519.2	+1	validated	p.G1341*	1.000	41	0%	32	34.4%	14	57.1%	-	-	-	NULL
MRPL18	29074	genome.wustl.edu	37	6	160218495	160218495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014161.3	+1	reviewed	p.A139V	0.908	178	0%	132	34.1%	130	33%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Translational machinery components
MLLT4	4301	genome.wustl.edu	37	6	168323616	168323618	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001040001.1	+1	validated	p.L990in_frame_del	0.996:0.996:0.577	-	-	-	-	-	-	-	-	-	NULL
GRID2IP	392862	genome.wustl.edu	37	7	6541522	6541522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001145118.1	-1	validated	p.R1097W	1.000	72	0%	61	29.5%	5	0%	possibly_damaging(0.834)	tolerated(0.2)	neutral(0.367)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FKBP9	11328	genome.wustl.edu	37	7	33044805	33044805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007270.3	+1	validated	p.A519T	0.560	374	0%	317	36.3%	79	36.7%	benign(0.005)	tolerated(0.34)	neutral(0.023)	HMMSmart_EFh,superfamily_SSF47473
YKT6	10652	genome.wustl.edu	37	7	44250649	44250649	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006555.3	+1	reviewed	p.R163*	1.000	259	0%	224	40.2%	61	8.1%	-	-	-	HMMPfam_Synaptobrevin
GTF2IRD1	9569	genome.wustl.edu	37	7	73973315	73973315	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000470715	+1	known	p.L122F	1.000	94	0%	92	37%	29	55.1%	-	-	-	HMMPfam_GTF2I
POR	5447	genome.wustl.edu	37	7	75615341	75615341	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000447222	+1	known	p.A641T	0.723	31	0%	35	42.9%	199	39.6%	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
CDK14	5218	genome.wustl.edu	37	7	90741975	90741975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012395.2	+1	validated	p.R407W	1.000	69	0%	35	31.4%	1	0%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	superfamily_Protein kinase-like (PK-like)
SAMD9L	219285	genome.wustl.edu	37	7	92762079	92762079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_152703.2	-1	validated	p.K1069R	0.000	248	0%	225	35.1%	1	0%	benign(0.186)	tolerated(0.13)	neutral(0.270)	NULL
ZAN	7455	genome.wustl.edu	37	7	100334137	100334137	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003386.1	+1	reviewed	p.D46	0.002	92	0%	64	31.2%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
ZAN	7455	genome.wustl.edu	37	7	100373434	100373434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003386.1	+1	reviewed	p.S2057Y	0.543	189	0%	152	30.9%	0	-	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100646595	100646595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000379442	+1	known	p.P4394T	0.005	986	0%	801	17.2%	0	-	probably_damaging(0.98)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100656417	100656417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000379442	+1	known	p.R5354H	0.218	77	1.3%	43	34.9%	0	-	probably_damaging(0.957)	-	-	NULL
IQUB	154865	genome.wustl.edu	37	7	123142693	123142693	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_178827.4	-1	validated	p.K327N	0.001	560	0%	539	31%	0	-	benign(0.016)	tolerated(0.35)	neutral(0.021)	NULL
GCC1	79571	genome.wustl.edu	37	7	127222361	127222361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024523.5	-1	reviewed	p.V679I	0.401	233	0%	170	34.7%	13	23%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
FLNC	2318	genome.wustl.edu	37	7	128483928	128483928	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001458.4	+1	reviewed	p.L964	0.998	81	0%	83	45.8%	3	66.6%	-	-	-	HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128484975	128484975	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001458.4	+1	reviewed	p.V1152	0.986	40	0%	35	42.9%	4	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
SMO	6608	genome.wustl.edu	37	7	128850360	128850360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005631.3	+1	provisional	p.T541	0.182	43	0%	37	29.7%	93	40.8%	-	-	-	HMMPfam_Frizzled
KLHDC10	23008	genome.wustl.edu	37	7	129770465	129770465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014997.2	+1	validated	p.P403H	1.000	281	0%	208	40.9%	72	48.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
STRA8	346673	genome.wustl.edu	37	7	134931215	134931215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_182489.1	+1	provisional	p.G165W	0.011	42	0%	14	50%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DGKI	9162	genome.wustl.edu	37	7	137172401	137172401	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004717.2	-1	reviewed	p.D779	1.000	259	0%	270	34.1%	0	-	-	-	-	NULL
WEE2	494551	genome.wustl.edu	37	7	141418949	141418949	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001105558.1	+1	validated	p.G221	0.039	528	0%	427	33%	0	-	-	-	-	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MGAM	8972	genome.wustl.edu	37	7	141765550	141765550	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000475668	+1	known	p.A1563	0.018	284	0%	207	34.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
ARHGEF5	7984	genome.wustl.edu	37	7	144060941	144060941	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005435.3	+1	reviewed	p.A393	0.000	434	0%	352	19%	11	9%	-	-	-	NULL
GIMAP1	170575	genome.wustl.edu	37	7	150417808	150417808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_130759.2	+1	reviewed	p.R239Q	0.000	18	0%	17	23.5%	0	-	possibly_damaging(0.737)	tolerated(0.63)	neutral(0.273)	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases
MLL3	58508	genome.wustl.edu	37	7	151843732	151843732	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000360104	-1	known	p.G2222R	0.998	179	0%	157	40.8%	12	58.3%	-	-	-	HMMPfam_FYRC,HMMSmart_SM00542
MIR598	693183	genome.wustl.edu	37	8	10892732	10892734	+	RNA	DEL	GAC	GAC	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	GAC	GAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000384868	-1	known	NULL	0.952:0.967:0.967	-	-	-	-	-	-	-	-	-	-
PSD3	23362	genome.wustl.edu	37	8	18393318	18393318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015310.3	-1	validated	p.R1027C	1.000	352	0%	255	33.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SH2D4A	63898	genome.wustl.edu	37	8	19250946	19250946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022071.3	+1	validated	p.D389G	0.390	158	0%	110	37.3%	4	25%	benign(0.148)	tolerated(0.12)	neutral(0.274)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
HR	55806	genome.wustl.edu	37	8	21984798	21984798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005144.4	-1	reviewed	p.R386L	0.926	48	0%	36	44.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC39A14	23516	genome.wustl.edu	37	8	22267591	22267591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015359.4	+1	validated	p.T197M	1.000	239	0.4%	190	32.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zip
UNC5D	137970	genome.wustl.edu	37	8	35579762	35579762	+	Silent	SNP	G	G	A	rs141612901	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_080872.2	+1	validated	p.S384	0.086	374	0%	269	31.2%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41572594	41572594	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001142446.1	-1	reviewed	e15-2	1.000	63	0%	40	32.5%	0	-	-	-	-	-
NSMAF	8439	genome.wustl.edu	37	8	59522169	59522169	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001144772.1	-1	reviewed	p.G258	1.000	166	0%	125	27.2%	16	37.5%	-	-	-	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
VCPIP1	80124	genome.wustl.edu	37	8	67577076	67577078	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_025054.4	-1	validated	p.E706in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TRPA1	8989	genome.wustl.edu	37	8	72959419	72959419	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007332.2	-1	reviewed	p.L643	0.000	291	0.7%	280	38.6%	0	-	-	-	-	superfamily_Ankyrin repeat
ZFHX4	79776	genome.wustl.edu	37	8	77763332	77763332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024721.4	+1	validated	p.R1347H	1.000	214	0%	178	36%	1	0%	possibly_damaging(0.646)	-	-	NULL
TP53INP1	94241	genome.wustl.edu	37	8	95952409	95952411	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033285.3	-1	validated	p.E52in_frame_del	0.971:0.979:0.009	-	-	-	-	-	-	-	-	-	NULL
TRHR	7201	genome.wustl.edu	37	8	110131437	110131437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003301.4	+1	reviewed	p.P317L	1.000	330	0%	321	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
PHF20L1	51105	genome.wustl.edu	37	8	133829187	133829187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016018.4	+1	validated	p.R413K	1.000	150	0%	143	31.5%	14	14.2%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
LOC100288108	100288108	genome.wustl.edu	37	8	140631281	140631281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_002342878.1	+1	model	p.H342N	1.000	80	0%	53	35.8%	0	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15594121	15594123	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173550.2	+1	predicted	p.E211in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000221917	0	genome.wustl.edu	37	9	69432723	69432723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000333394	+1	known	p.Q24*	0.000	228	0%	184	20.1%	0	-	-	-	-	NULL
PSAT1	29968	genome.wustl.edu	37	9	80932598	80932598	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_058179.2	+1	reviewed	p.Y249	0.920	355	0.6%	318	35.8%	94	42.5%	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
S1PR3	1903	genome.wustl.edu	37	9	91616827	91616827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005226.2	+1	reviewed	p.S238T	1.000	106	0%	106	34.9%	21	42.8%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF367	195828	genome.wustl.edu	37	9	99160556	99160556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_153695.3	-1	validated	p.R154H	1.000	300	0%	265	37.7%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108127819	108127819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_080546.3	+1	validated	p.R437C	1.000	283	0%	308	31.8%	52	51.9%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_DUF580
MUSK	4593	genome.wustl.edu	37	9	113459615	113459615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005592.3	+1	reviewed	p.R166Q	0.998	221	0%	229	36.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DFNB31	25861	genome.wustl.edu	37	9	117186681	117186681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015404.3	-1	reviewed	p.R450H	0.999	58	0%	35	45.7%	6	66.6%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
NEK6	10783	genome.wustl.edu	37	9	127055225	127055225	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001145001.2	+1	reviewed	p.P2	0.002	134	0%	117	35%	0	-	-	-	-	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127566530	127566531	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_182487.2	+1	validated	p.360in_frame_insA	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
COQ4	51117	genome.wustl.edu	37	9	131087458	131087458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016035.3	+1	validated	p.R80H	0.000	65	0%	76	40.8%	42	19%	benign(0.012)	tolerated(0.58)	neutral(0.005)	HMMPfam_Coq4
SLC27A4	10999	genome.wustl.edu	37	9	131117953	131117953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005094.3	+1	reviewed	p.A551V	1.000	41	0%	15	46.7%	71	46.4%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	superfamily_Acetyl-CoA synthetase-like
CEL	1056	genome.wustl.edu	37	9	135940544	135940544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001807.3	+1	reviewed	p.R156H	0.562	62	0%	31	38.7%	15	33.3%	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
FBXW5	54461	genome.wustl.edu	37	9	139835466	139835466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018998.2	-1	reviewed	p.R539C	1.000	56	0%	31	38.7%	186	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NDOR1	27158	genome.wustl.edu	37	9	140110748	140110748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001144027.1	+1	reviewed	p.T517M	0.005	53	0%	34	41.2%	21	61.9%	possibly_damaging(0.938)	-	-	NULL
ADARB2	105	genome.wustl.edu	37	10	1313212	1313212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018702.2	-1	reviewed	p.T377M	0.988	125	0%	109	37.6%	0	-	probably_damaging(0.986)	tolerated(0.21)	deleterious(0.478)	HMMSmart_ADEAMc
CALML3	810	genome.wustl.edu	37	10	5567436	5567436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005185.2	+1	validated	p.D130N	0.932	58	0%	39	43.6%	53	39.6%	benign(0.125)	deleterious(0)	neutral(0.455)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
ITIH2	3698	genome.wustl.edu	37	10	7791261	7791261	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002216.2	+1	validated	p.F935	0.810	235	0.4%	203	29.1%	0	-	-	-	-	NULL
PRPF18	8559	genome.wustl.edu	37	10	13658484	13658484	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003675.3	+1	reviewed	p.G293	0.232	285	0%	256	38.3%	25	48%	-	-	-	HMMPfam_Prp18,superfamily_Functional domain of the splicing factor Prp18
ZEB1	6935	genome.wustl.edu	37	10	31784758	31784758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_030751.5	+1	reviewed	p.G104*	0.818	272	0%	283	34.6%	2	0%	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	49998857	49998857	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000312002	+1	known	p.S475G	0.983	182	0%	124	26.6%	0	-	-	-	-	NULL
NEUROG3	50674	genome.wustl.edu	37	10	71332357	71332357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020999.3	-1	reviewed	p.A148V	0.002	41	0%	30	53.3%	0	-	benign(0.014)	tolerated(0.09)	neutral(0.297)	superfamily_HLH_basic
KIAA0913	23053	genome.wustl.edu	37	10	75553687	75553687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015037.2	+1	validated	p.A837V	0.999	131	0%	86	31.4%	13	46.1%	benign(0.076)	tolerated(0.19)	neutral(0.055)	NULL
FAM22B	729262	genome.wustl.edu	37	10	81471528	81471528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000429828	+1	known	p.R642W	0.000	281	0%	218	12.8%	4	50%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
PTEN	5728	genome.wustl.edu	37	10	89711875	89711875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000371953	+1	known	p.G165R	1.000	379	0%	313	68.7%	56	96.4%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
KIF20B	9585	genome.wustl.edu	37	10	91512410	91512410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016195.2	+1	validated	p.V1397M	0.000	262	0%	262	42%	10	50%	possibly_damaging(0.774)	deleterious(0.02)	deleterious(0.671)	NULL
PLCE1	51196	genome.wustl.edu	37	10	95987095	95987095	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016341.3	+1	reviewed	p.T614	0.044	226	0%	201	25.9%	0	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
SORBS1	10580	genome.wustl.edu	37	10	97194456	97194456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001034954.1	-1	validated	p.R32H	0.985	167	0%	201	39.3%	0	-	probably_damaging(0.989)	tolerated(0.15)	deleterious(0.680)	NULL
TLL2	7093	genome.wustl.edu	37	10	98273343	98273343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012465.3	-1	validated	p.A34T	0.000	14	0.000	8	0.750	0	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99664517	99664517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018058.4	-1	validated	p.R302H	0.890	106	0%	60	31.7%	2	0%	probably_damaging(0.993)	tolerated(0.56)	neutral(0.457)	HMMPfam_FG-GAP,superfamily_Integrin alpha N-terminal domain
PPRC1	23082	genome.wustl.edu	37	10	103892905	103892905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015062.3	+1	reviewed	p.A27V	0.923	16	0.000	9	0.444	1	0%	benign(0.001)	tolerated(1)	-	NULL
ENSG00000207029	0	genome.wustl.edu	37	10	104351367	104351367	+	RNA	SNP	C	C	T	rs143738393	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000384302	+1	novel	NULL	0.000	122	2.5%	45	28.9%	0	-	-	-	-	-
MIR1307	100302174	genome.wustl.edu	37	10	105154047	105154047	+	RNA	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000408840	-1	known	NULL	0.319	206	0.5%	156	41%	2	50%	-	-	-	-
PPP2R2D	55844	genome.wustl.edu	37	10	133761150	133761150	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000455566	+1	known	p.S282A	0.997	142	0%	127	37.8%	53	49%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00320,superfamily_WD40 repeat-like
AP2A2	161	genome.wustl.edu	37	11	984657	984657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012305.2	+1	validated	p.A240T	0.996	155	0.6%	100	35%	51	41.1%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Adaptin_N,superfamily_ARM repeat
MUC2	4583	genome.wustl.edu	37	11	1092128	1092128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002457.2	+1	reviewed	p.S1316I	0.003	122	0%	113	37.2%	0	-	benign(0.055)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1278483	1278483	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002458.1	+1	validated	p.P5420	0.008	156	0%	116	37.1%	0	-	-	-	-	HMMSmart_SM00214,HMMSmart_SM00215
ART5	116969	genome.wustl.edu	37	11	3661585	3661586	+	In_Frame_Ins	INS	-	-	TGG	rs80248801		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001079536.1	-1	reviewed	p.25in_frame_insT	0.993:0.975	-	-	-	-	-	-	-	-	-	superfamily_ADP-ribosylation
DCHS1	8642	genome.wustl.edu	37	11	6652302	6652302	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003737.2	-1	reviewed	p.S1304	1.000	33	0%	18	55.6%	8	25%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TUB	7275	genome.wustl.edu	37	11	8120366	8120366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003320.4	+1	reviewed	p.S409A	0.867	219	0%	136	35.3%	3	0%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Tub,superfamily_Tubby_C
ENSG00000236919	0	genome.wustl.edu	37	11	50206697	50206697	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000435540	-1	known	p.T37	1.000	40	0%	23	17.4%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000166007	0	genome.wustl.edu	37	11	55059650	55059650	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000309470	-1	known	p.E420	0.052	267	0%	273	35.2%	0	-	-	-	-	HMMPfam_SPRY
ENSG00000166007	0	genome.wustl.edu	37	11	55059906	55059906	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000309470	-1	known	p.W335*	0.019	344	0%	337	37.1%	0	-	-	-	-	NULL
ZP1	22917	genome.wustl.edu	37	11	60637023	60637023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_207341.2	+1	validated	p.H111R	0.998	219	0%	189	34.4%	0	-	possibly_damaging(0.481)	deleterious(0.05)	deleterious(0.505)	NULL
STX5	6811	genome.wustl.edu	37	11	62595063	62595063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003164.3	-1	validated	p.R89Q	1.000	224	0%	225	32%	63	44.4%	benign(0.006)	tolerated(0.67)	neutral(0.003)	superfamily_t-snare proteins
YIF1A	10897	genome.wustl.edu	37	11	66052851	66052851	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020470.2	-1	validated	e6+1	1.000	48	0%	18	33.3%	2	100%	-	-	-	-
ANKRD13D	338692	genome.wustl.edu	37	11	67068601	67068601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_207354.2	+1	validated	p.G318D	1.000	159	0%	103	40.8%	62	51.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NADSYN1	55191	genome.wustl.edu	37	11	71202000	71202000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018161.4	+1	validated	p.F558L	0.999	88	0%	73	38.4%	75	57.3%	benign(0.022)	tolerated(0.51)	neutral(0.010)	HMMPfam_NAD_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
DEFB108B	245911	genome.wustl.edu	37	11	71548473	71548473	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001002035.1	+1	provisional	p.E29	0.976	221	0%	231	32.9%	0	-	-	-	-	HMMPfam_Defensin_beta
STARD10	10809	genome.wustl.edu	37	11	72466011	72466011	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006645.2	-1	validated	p.A269	0.443	34	0%	18	44.4%	135	45.9%	-	-	-	NULL
DLG2	1740	genome.wustl.edu	37	11	83544657	83544657	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001142699.1	-1	reviewed	p.S574	0.988	179	0%	207	13.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NOX4	50507	genome.wustl.edu	37	11	89155084	89155084	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016931.3	-1	reviewed	p.T205	1.000	272	0.4%	307	34.5%	6	33.3%	-	-	-	HMMPfam_Ferric_reduct
SCARNA9	619383	genome.wustl.edu	37	11	93454832	93454837	+	RNA	DEL	GTGTGT	GTGTGT	-	rs143635317	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	GTGTGT	GTGTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NR_002569.1	+1	provisional	NULL	0.007:0.008:0.006:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
SESN3	143686	genome.wustl.edu	37	11	94911960	94911960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144665.2	-1	provisional	p.V324L	1.000	326	0%	303	36.3%	27	51.8%	possibly_damaging(0.775)	tolerated(0.35)	neutral(0.309)	HMMPfam_PA26
ARHGAP42	143872	genome.wustl.edu	37	11	100847632	100847632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_152432.2	+1	provisional	p.P775S	1.000	198	0%	172	30.2%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
APOA4	337	genome.wustl.edu	37	11	116692557	116692557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000482.3	-1	reviewed	p.A73T	0.013	138	0%	105	32.4%	0	-	benign(0.015)	tolerated(0.38)	neutral(0.018)	HMMPfam_Apolipoprotein,superfamily_Apolipoprotein
DDX25	29118	genome.wustl.edu	37	11	125791155	125791155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_013264.3	+1	reviewed	p.D424G	1.000	62	0%	53	30.2%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD4	1108	genome.wustl.edu	37	12	6701583	6701583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001273.2	-1	reviewed	p.R975H	1.000	133	0%	119	20.2%	168	44.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
LEPREL2	10536	genome.wustl.edu	37	12	6939549	6939549	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014262.3	+1	validated	p.G228D	0.016	71	0%	41	41.5%	34	55.8%	-	-	-	NULL
LEPREL2	10536	genome.wustl.edu	37	12	6940998	6940998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000290510	+1	known	p.R377C	0.000	130	0%	122	29.5%	74	56.7%	possibly_damaging(0.845)	tolerated(0.05)	deleterious(0.669)	NULL
PTPN6	5777	genome.wustl.edu	37	12	7069299	7069299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_080549.3	+1	reviewed	p.A493V	0.984	54	0%	29	31%	62	43.5%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
LRP6	4040	genome.wustl.edu	37	12	12291316	12291316	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002336.2	-1	reviewed	p.R1184*	1.000	594	0%	461	35.6%	10	0%	-	-	-	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
ATF7IP	55729	genome.wustl.edu	37	12	14576892	14576892	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018179.3	+1	validated	p.R15*	1.000	116	0.9%	150	34%	20	60%	-	-	-	NULL
PYROXD1	79912	genome.wustl.edu	37	12	21598309	21598309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024854.3	+1	validated	p.V65D	1.000	171	0%	207	33.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
GYS2	2998	genome.wustl.edu	37	12	21721870	21721870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_021957.3	-1	reviewed	p.C251Y	1.000	303	0%	275	34.2%	0	-	possibly_damaging(0.95)	tolerated(1)	neutral(0.394)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033360.2	-1	reviewed	p.G13D	1.000	391	0%	378	32.8%	14	50%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC91	55297	genome.wustl.edu	37	12	28544297	28544297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018318.3	+1	validated	p.A239T	1.000	258	0%	224	31.2%	14	21.4%	probably_damaging(0.979)	tolerated(0.2)	deleterious(0.471)	NULL
TMTC1	83857	genome.wustl.edu	37	12	29667535	29667535	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_175861.2	-1	provisional	p.A662	0.819	410	0%	352	33.8%	0	-	-	-	-	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
SLC2A13	114134	genome.wustl.edu	37	12	40345158	40345158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_052885.3	-1	validated	p.V312E	1.000	225	0%	166	38.6%	0	-	benign(0.427)	tolerated(0.08)	neutral(0.439)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
CNTN1	1272	genome.wustl.edu	37	12	41312464	41312464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001843.2	+1	reviewed	p.G40R	1.000	247	0%	235	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPHLN1	51535	genome.wustl.edu	37	12	42836514	42836514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_016488.6	+1	reviewed	p.E366K	0.443	100	0%	65	40%	5	40%	benign(0)	deleterious(0)	neutral(0.445)	NULL
PFKM	5213	genome.wustl.edu	37	12	48539462	48539462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000289.5	+1	reviewed	p.R772W	0.945	148	0%	129	37.2%	195	43%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Phosphofructokinase
CELA1	1990	genome.wustl.edu	37	12	51736468	51736468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001971.5	-1	reviewed	p.V73M	1.000	133	0%	99	42.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SLC4A8	9498	genome.wustl.edu	37	12	51853749	51853749	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001039960.1	+1	validated	p.F290	1.000	182	0%	199	37.7%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
HOXC6	3223	genome.wustl.edu	37	12	54423444	54423444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004503.3	+1	reviewed	p.G136S	1.000	152	0%	142	35.9%	32	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Homeodomain-like
ITGA7	3679	genome.wustl.edu	37	12	56088563	56088563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001144996.1	-1	reviewed	p.A736V	0.997	67	0%	49	36.7%	10	20%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
OBFC2B	79035	genome.wustl.edu	37	12	56620169	56620169	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024068.3	+1	validated	p.S134	0.761	287	0%	192	40.6%	36	47.2%	-	-	-	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56651122	56651122	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173595.3	-1	validated	p.L45	1.000	231	0%	215	35.8%	4	75%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PHLDA1	22822	genome.wustl.edu	37	12	76424723	76424723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007350.3	-1	reviewed	p.P267A	1.000	110	0%	56	42.9%	155	42.5%	benign(0.025)	tolerated(0.66)	neutral(0.004)	HMMSmart_PH,superfamily_SSF50729
NAP1L1	4673	genome.wustl.edu	37	12	76449901	76449901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004537.4	-1	reviewed	p.K157R	0.999	653	0%	621	31.7%	362	0%	benign(0.394)	tolerated(0.13)	neutral(0.379)	HMMPfam_NAP
MYF5	4617	genome.wustl.edu	37	12	81111049	81111049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005593.2	+1	validated	p.M69I	1.000	19	0%	24	45.8%	0	-	benign(0.013)	tolerated(0.17)	neutral(0.059)	HMMPfam_Basic,HMMSmart_BASIC
STAB2	55576	genome.wustl.edu	37	12	104098349	104098349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_017564.9	+1	reviewed	p.T1286K	0.000	438	0%	425	35.1%	0	-	benign(0)	tolerated(1)	-	NULL
HCFC2	29915	genome.wustl.edu	37	12	104473309	104473309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_013320.2	+1	reviewed	p.P187H	1.000	310	0%	323	34.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Galactose oxidase central domain
BTBD11	121551	genome.wustl.edu	37	12	108008866	108008866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001018072.1	+1	validated	p.S643F	1.000	372	0%	314	35.7%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ankyrin repeat
MYO1H	283446	genome.wustl.edu	37	12	109826583	109826583	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001101421.3	+1	provisional	p.D20	0.793	228	0%	191	39.8%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TBX5	6910	genome.wustl.edu	37	12	114793686	114793686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000192.3	-1	reviewed	p.S403N	0.980	57	0%	47	34%	0	-	benign(0.086)	deleterious(0)	neutral(0.451)	NULL
GALNT9	50614	genome.wustl.edu	37	12	132683794	132683794	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000328957	-1	known	p.S474R	0.024	31	0%	24	37.5%	1	0%	benign(0.123)	tolerated(0.33)	neutral(0.034)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
GOLGA3	2802	genome.wustl.edu	37	12	133351715	133351715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000456883	-1	known	p.P1385	0.000	68	0%	53	30.2%	0	-	-	-	-	NULL
SHISA2	387914	genome.wustl.edu	37	13	26620848	26620848	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001007538.1	-1	provisional	p.Q231*	1.000	184	0%	121	43.8%	0	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38266398	38266398	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003306.1	-1	validated	p.R324	0.976	236	0%	202	32.2%	1	0%	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39424265	39424265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_207361.4	+1	reviewed	p.Q2157R	0.254	281	0.7%	222	39.2%	2	0%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Calx-beta,HMMSmart_SM00237
PCDH17	27253	genome.wustl.edu	37	13	58206890	58206890	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001040429.2	+1	reviewed	p.S70	0.194	33	0%	22	54.5%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
MYCBP2	23077	genome.wustl.edu	37	13	77640128	77640128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015057.4	-1	validated	p.A4146V	1.000	150	0%	141	31.9%	17	64.7%	possibly_damaging(0.672)	tolerated(0.08)	deleterious(0.538)	NULL
ABCC4	10257	genome.wustl.edu	37	13	95705413	95705413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005845.3	-1	reviewed	p.M1131T	1.000	332	0%	391	35.3%	2	0%	possibly_damaging(0.813)	deleterious(0)	deleterious(0.752)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC121906	121906	genome.wustl.edu	37	13	98128188	98128188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_002344083.1	+1	model	p.H150R	1.000	111	0%	127	12.6%	0	-	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ABHD4	63874	genome.wustl.edu	37	14	23075370	23075370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022060.2	+1	validated	p.K228R	1.000	292	0%	234	37.6%	31	45.1%	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
CPNE6	9362	genome.wustl.edu	37	14	24546444	24546444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006032.2	+1	reviewed	p.R461C	1.000	86	0%	38	31.6%	1	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMSmart_SM00327,HMMPfam_Copine,superfamily_vWA-like
NFATC4	4776	genome.wustl.edu	37	14	24845275	24845275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001136022.1	+1	reviewed	p.R738H	1.000	95	0%	68	30.9%	45	31.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
DLGAP5	9787	genome.wustl.edu	37	14	55618608	55618608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014750.4	-1	validated	p.S725G	0.001	280	0%	322	34.2%	48	45.8%	benign(0.054)	tolerated(0.24)	neutral(0.041)	NULL
HIF1A	3091	genome.wustl.edu	37	14	62200996	62200996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001530.3	+1	validated	p.V341I	1.000	296	0%	278	34.5%	69	53.6%	possibly_damaging(0.828)	tolerated(0.12)	deleterious(0.575)	HMMSmart_SM00086,superfamily_PYP-like sensor domain (PAS domain)
PTPN21	11099	genome.wustl.edu	37	14	88946066	88946066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007039.3	-1	reviewed	p.P570L	0.994	5	0.000	18	0.500	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SERPINA12	145264	genome.wustl.edu	37	14	94962888	94962888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173850.2	-1	provisional	p.R243C	0.057	267	0%	254	36.6%	0	-	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
BEGAIN	57596	genome.wustl.edu	37	14	101005141	101005141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020836.3	-1	validated	p.S316N	1.000	50	0%	21	38.1%	3	33.3%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
IGHG4	3503	genome.wustl.edu	37	14	106091088	106091088	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000390543	-1	known	p.E237Q	0.020	538	0%	415	15.2%	13	0%	probably_damaging(0.993)	tolerated(0.4)	neutral(0.466)	HMMPfam_C1-set,superfamily_SSF48726
IGHG2	3501	genome.wustl.edu	37	14	106110859	106110859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000390545	-1	known	p.S90N	0.059	504	0.2%	355	32.4%	14	0%	benign(0.051)	deleterious(0)	neutral(0.448)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
RYR3	6263	genome.wustl.edu	37	15	34040341	34040341	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001036.3	+1	validated	p.A2672	0.996	182	0%	136	39%	0	-	-	-	-	HMMPfam_RyR
STARD9	57519	genome.wustl.edu	37	15	42978235	42978235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_001129482.3	+1	model	p.L1401I	0.995	145	0%	118	39.8%	4	100%	probably_damaging(0.995)	-	-	NULL
TGM5	9333	genome.wustl.edu	37	15	43531252	43531252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_201631.3	-1	reviewed	p.V370I	0.833	137	0%	136	27.2%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_Cysteine proteinases
SLC27A2	11001	genome.wustl.edu	37	15	50519341	50519341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003645.3	+1	reviewed	p.I475V	0.909	349	0%	360	33.9%	6	66.6%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
UACA	55075	genome.wustl.edu	37	15	70961645	70961645	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018003.2	-1	validated	p.R460	0.390	456	0.4%	430	34%	20	50%	-	-	-	NULL
CSK	1445	genome.wustl.edu	37	15	75094839	75094839	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001127190.1	+1	validated	p.H446	0.595	29	0%	12	66.7%	128	43.7%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TMC3	342125	genome.wustl.edu	37	15	81624961	81624961	+	Silent	SNP	G	G	A	rs115607037	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001080532.1	-1	provisional	p.F1034	0.000	88	0%	48	43.8%	0	-	-	-	-	NULL
NMB	4828	genome.wustl.edu	37	15	85198560	85198560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_205858.1	-1	validated	p.H136N	0.116	228	0%	181	11%	35	20%	benign(0.382)	-	-	NULL
FANCI	55215	genome.wustl.edu	37	15	89837161	89837161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001113378.1	+1	reviewed	p.A797T	0.006	373	0%	352	39.2%	34	44.1%	benign(0.01)	tolerated(0.39)	neutral(0.017)	NULL
CRAMP1L	57585	genome.wustl.edu	37	16	1676044	1676044	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020825.3	+1	validated	p.S139	0.050	164	0%	112	33%	2	0%	-	-	-	NULL
SHISA9	729993	genome.wustl.edu	37	16	12996406	12996406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001145204.2	+1	validated	p.A203V	1.000	53	0%	26	53.8%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
PDZD9	255762	genome.wustl.edu	37	16	21995949	21995949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173806.3	-1	validated	p.E83G	0.000	172	0%	226	33.6%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
PALB2	79728	genome.wustl.edu	37	16	23637666	23637666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024675.3	-1	reviewed	p.A880V	0.967	264	0%	230	32.2%	13	38.4%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_WD40_like
RBBP6	5930	genome.wustl.edu	37	16	24581211	24581211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006910.4	+1	reviewed	p.P1067L	1.000	129	0.8%	177	18.6%	20	25%	probably_damaging(0.99)	-	-	NULL
RABEP2	79874	genome.wustl.edu	37	16	28925741	28925741	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024816.2	-1	validated	p.F237fs	1.000	-	-	-	-	-	-	-	-	-	PatternScan_ODR_DC_2_2
RRN3P2	653390	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000427965	+1	known	p.W375R	0.991	172	1.7%	145	27.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_RRN3
PRR14	78994	genome.wustl.edu	37	16	30666862	30666862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024031.2	+1	provisional	p.P452T	0.866	139	0%	144	38.2%	56	83.9%	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	NULL
ITGAX	3687	genome.wustl.edu	37	16	31374590	31374590	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000887.3	+1	reviewed	p.K535	0.005	310	0%	186	41.9%	1	0%	-	-	-	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
GPT2	84706	genome.wustl.edu	37	16	46940859	46940859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_133443.2	+1	validated	p.L183P	1.000	164	0%	142	27.5%	55	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
MT2A	4502	genome.wustl.edu	37	16	56642916	56642916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005953.3	+1	validated	p.T14I	0.996	150	0%	115	11.3%	1534	2.4%	benign(0.201)	deleterious(0)	neutral(0.464)	HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_METALLOTHIONEIN_VRT
ZFHX3	463	genome.wustl.edu	37	16	72992931	72992931	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006885.3	-1	reviewed	p.R372*	1.000	113	0.9%	102	43.1%	2	50%	-	-	-	NULL
MBTPS1	8720	genome.wustl.edu	37	16	84129282	84129282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003791.2	-1	reviewed	p.R184W	1.000	121	0.8%	60	40%	69	44.9%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	superfamily_Pept_S8_S53
KIAA0664	23277	genome.wustl.edu	37	17	2601443	2601443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015229.3	-1	validated	p.R532W	0.997	58	0%	15	40%	58	51.7%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3924599	3924599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015113.3	-1	validated	p.L2410M	1.000	169	0%	108	41.7%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GP1BA	2811	genome.wustl.edu	37	17	4836578	4836578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000173.5	+1	reviewed	p.C227R	1.000	108	0%	100	30%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_LRRCT,superfamily_SSF52058
KIF1C	10749	genome.wustl.edu	37	17	4905787	4905787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006612.5	+1	validated	p.R153Q	1.000	154	0%	130	37.7%	71	47.8%	possibly_damaging(0.886)	tolerated(0.11)	deleterious(0.618)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
SLC2A4	6517	genome.wustl.edu	37	17	7187354	7187354	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001042.2	+1	reviewed	p.G170	0.976	69	0%	34	44.1%	4	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
CNTROB	116840	genome.wustl.edu	37	17	7852766	7852766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000380262	+1	known	p.R906W	0.307	131	0%	82	28%	28	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGEF15	22899	genome.wustl.edu	37	17	8222648	8222648	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_173728.2	+1	reviewed	p.W735*	1.000	87	0%	97	37.1%	2	0%	-	-	-	superfamily_SSF50729
MYH8	4626	genome.wustl.edu	37	17	10307717	10307717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002472.2	-1	reviewed	p.R873Q	1.000	713	0%	575	34.3%	0	-	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	NULL
RAI1	10743	genome.wustl.edu	37	17	17701780	17701780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_030665.3	+1	reviewed	p.G1840R	1.000	17	0%	12	33.3%	32	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29162238	29162238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024857.3	+1	provisional	p.L380S	1.000	151	0%	176	35.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLLT6	4302	genome.wustl.edu	37	17	36868241	36868241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005937.3	+1	validated	p.T232A	0.951	188	0%	138	36.2%	15	66.6%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PIP4K2B	8396	genome.wustl.edu	37	17	36936819	36936819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003559.4	-1	reviewed	p.S131R	1.000	82	0%	72	27.8%	23	39.1%	possibly_damaging(0.536)	deleterious(0.01)	deleterious(0.587)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
CASC3	22794	genome.wustl.edu	37	17	38318989	38318989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007359.4	+1	reviewed	p.R207H	0.999	163	0.6%	132	31.1%	37	59.4%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Btz
LRRC46	90506	genome.wustl.edu	37	17	45914406	45914406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_033413.3	+1	validated	p.R296*	0.000	37	0%	23	39.1%	2	0%	-	-	-	NULL
SNF8	11267	genome.wustl.edu	37	17	47018301	47018301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007241.2	-1	provisional	p.V77M	1.000	113	0%	90	36.7%	162	48.7%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
B4GALNT2	124872	genome.wustl.edu	37	17	47246168	47246168	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_153446.2	+1	validated	p.V467	1.000	137	0%	109	31.2%	0	-	-	-	-	NULL
SCPEP1	59342	genome.wustl.edu	37	17	55075782	55075782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_021626.2	+1	validated	p.R306Q	0.000	363	0%	307	34.5%	225	45.3%	benign(0.005)	tolerated(0.71)	neutral(0.002)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
DDX42	11325	genome.wustl.edu	37	17	61895427	61895427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007372.2	+1	reviewed	p.S829I	0.997	42	0%	43	46.5%	76	39.4%	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
FTSJ3	117246	genome.wustl.edu	37	17	61902010	61902010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_017647.3	-1	reviewed	p.R302C	1.000	204	0%	144	29.2%	46	56.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCN4A	6329	genome.wustl.edu	37	17	62049520	62049520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000334.4	-1	reviewed	p.P153L	1.000	202	0%	152	33.6%	0	-	possibly_damaging(0.671)	tolerated(0.47)	neutral(0.249)	superfamily_Voltage-gated potassium channels
LOC100289681	100289681	genome.wustl.edu	37	17	73269607	73269607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_002343582.1	+1	model	p.C272R	0.000	82	0%	52	13.5%	13	7.6%	-	-	-	NULL
LOC100287075	100287075	genome.wustl.edu	37	17	73488749	73488749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	XM_002343544.1	-1	model	p.A46T	0.004	86	0%	76	43.4%	39	43.5%	-	-	-	NULL
CYTH1	9267	genome.wustl.edu	37	17	76705746	76705746	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004762.2	-1	reviewed	p.L31	1.000	333	0%	234	35%	10	60%	-	-	-	NULL
CCDC40	55036	genome.wustl.edu	37	17	78032382	78032382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_017950.2	+1	validated	p.V417M	0.005	159	0%	117	37.6%	7	42.8%	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
METTL4	64863	genome.wustl.edu	37	18	2554824	2554824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022840.3	-1	validated	p.D225Y	0.022	141	0%	158	36.1%	10	30%	benign(0.427)	deleterious(0)	deleterious(0.584)	NULL
SMAD7	4092	genome.wustl.edu	37	18	46448210	46448210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005904.2	-1	provisional	p.T271	0.624	63	0%	83	26.5%	10	20%	-	-	-	HMMPfam_MH2,HMMSmart_DWB,superfamily_SMAD_FHA
CXXC1	30827	genome.wustl.edu	37	18	47809306	47809306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001101654.1	-1	validated	p.R585H	1.000	172	0%	99	37.4%	69	46.3%	possibly_damaging(0.847)	deleterious(0.03)	deleterious(0.690)	NULL
CXXC1	30827	genome.wustl.edu	37	18	47812965	47812965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001101654.1	-1	validated	p.R56Q	1.000	125	0.8%	64	17.2%	27	14.8%	benign(0.097)	tolerated(0.13)	neutral(0.260)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
DCC	1630	genome.wustl.edu	37	18	49867231	49867231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005215.3	+1	reviewed	p.A25V	1.000	400	0%	279	37.3%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
POLI	11201	genome.wustl.edu	37	18	51818215	51818215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_007195.2	+1	validated	p.V404A	0.999	214	0%	237	39.7%	9	44.4%	benign(0.003)	tolerated(1)	-	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain
BSG	682	genome.wustl.edu	37	19	579571	579571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001728.2	+1	reviewed	p.A163T	0.000	35	0%	23	34.8%	680	44.5%	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_Immunoglobulin
ARID3A	1820	genome.wustl.edu	37	19	971952	971952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005224.2	+1	reviewed	p.S557G	0.000	56	0%	25	32%	8	50%	unknown(0)	deleterious(0.01)	-	NULL
GAMT	2593	genome.wustl.edu	37	19	1399019	1399019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_138924.1	-1	reviewed	p.A156T	1.000	63	0%	55	32.7%	109	41.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF53335
BTBD2	55643	genome.wustl.edu	37	19	1997427	1997427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_017797.3	-1	reviewed	p.A148V	1.000	133	0%	67	31.3%	125	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PEX11G	92960	genome.wustl.edu	37	19	7550765	7550765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_080662.2	-1	provisional	p.A70S	0.993	125	0%	115	40.9%	13	38.4%	benign(0.021)	tolerated(0.72)	neutral(0.003)	HMMPfam_PEX11
ELAVL1	1994	genome.wustl.edu	37	19	8028622	8028622	+	Silent	SNP	G	G	A	rs182490610	by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001419.2	-1	reviewed	p.S242	0.058	68	0%	45	33.3%	219	49.7%	-	-	-	superfamily_RNA-binding domain RBD
FBN3	84467	genome.wustl.edu	37	19	8201091	8201091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_032447.3	-1	reviewed	p.T483I	0.944	35	0%	25	36%	0	-	possibly_damaging(0.501)	tolerated(0.12)	neutral(0.428)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
OR7G3	390883	genome.wustl.edu	37	19	9237482	9237482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001001958.1	-1	provisional	p.V49I	0.000	154	0%	155	18.1%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
COL5A3	50509	genome.wustl.edu	37	19	10091344	10091344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015719.3	-1	reviewed	p.P862T	0.908	124	0%	99	42.4%	1	0%	unknown(0)	tolerated(0.14)	-	NULL
SAMD1	90378	genome.wustl.edu	37	19	14200007	14200007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_138352.1	-1	provisional	p.K268N	0.995	146	0%	93	29%	123	45.5%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
NWD1	284434	genome.wustl.edu	37	19	16918475	16918475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001007525.2	+1	validated	p.T1137M	0.017	84	0%	51	35.3%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CILP2	148113	genome.wustl.edu	37	19	19655007	19655008	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_153221.2	+1	validated	p.A552fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000231205	0	genome.wustl.edu	37	19	20607748	20607748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000502675	-1	known	p.A2T	0.002	29	0%	37	37.8%	0	-	-	-	-	NULL
LRP3	4037	genome.wustl.edu	37	19	33696398	33696398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002333.3	+1	validated	p.G241D	0.509	5	0.000	7	0.571	3	33.3%	probably_damaging(0.998)	tolerated(0.53)	deleterious(0.482)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
UBA2	10054	genome.wustl.edu	37	19	34941218	34941218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005499.2	+1	validated	p.R274W	1.000	386	0%	395	32.9%	53	30.1%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_MoeB
MLL4	9757	genome.wustl.edu	37	19	36221622	36221622	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014727.1	+1	reviewed	p.Y1764S	1.000	91	1.1%	59	32.2%	10	60%	possibly_damaging(0.85)	-	-	HMMPfam_FYRN,HMMSmart_SM00541
ZNF569	148266	genome.wustl.edu	37	19	37904882	37904882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_152484.2	-1	validated	p.K226N	0.000	143	0%	217	35%	3	33.3%	benign(0.421)	tolerated(0.34)	neutral(0.160)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPTBN4	57731	genome.wustl.edu	37	19	41060512	41060512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020971.2	+1	reviewed	p.R1682C	1.000	13	0%	13	53.8%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PHLDB3	653583	genome.wustl.edu	37	19	43999420	43999420	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_198850.3	-1	validated	p.P341	0.977	138	0%	93	51.6%	14	50%	-	-	-	NULL
SIX5	147912	genome.wustl.edu	37	19	46268923	46268923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_175875.4	-1	reviewed	p.G686R	0.954	30	0%	34	14.7%	23	17.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47935695	47935695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015063.2	-1	validated	p.E706D	0.999	35	0%	28	28.6%	0	-	benign(0)	tolerated(0.96)	-	NULL
PLEKHA4	57664	genome.wustl.edu	37	19	49364674	49364674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_020904.2	-1	validated	p.R117Q	1.000	77	0%	49	44.9%	73	39.7%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZNF614	80110	genome.wustl.edu	37	19	52519708	52519708	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_025040.3	-1	validated	p.T381	0.000	343	0%	392	37.2%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF480	147657	genome.wustl.edu	37	19	52825750	52825750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_144684.2	+1	validated	p.R416Q	0.000	176	0%	228	42.5%	5	0%	benign(0.096)	tolerated(1)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DUXA	503835	genome.wustl.edu	37	19	57672141	57672141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001012729.1	-1	validated	p.R17H	0.035	679	0%	650	35.2%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF324B	388569	genome.wustl.edu	37	19	58967574	58967574	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_207395.2	+1	validated	p.G421	0.697	11	0%	10	40%	4	25%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
TRIB3	57761	genome.wustl.edu	37	20	368740	368740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_021158.3	+1	reviewed	p.R29H	0.000	76	0%	44	36.4%	5	60%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
ProSAPiP1	9762	genome.wustl.edu	37	20	3145118	3145118	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_014731.2	-1	validated	p.I668	0.983	38	0%	34	29.4%	5	0%	-	-	-	NULL
KIF16B	55614	genome.wustl.edu	37	20	16360305	16360305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_024704.3	-1	validated	p.R781H	0.001	316	0%	260	38.1%	1	0%	benign(0.046)	tolerated(0.12)	neutral(0.263)	NULL
C20orf4	25980	genome.wustl.edu	37	20	34843652	34843652	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_015511.3	+1	predicted	p.G380	0.002	153	0%	94	39.4%	47	48.9%	-	-	-	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45867607	45867607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000471951	-1	known	p.M855V	1.000	13	0%	10	50%	15	46.6%	benign(0.087)	tolerated(0.77)	neutral(0.007)	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47570123	47570123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006420.2	+1	reviewed	p.I212L	0.511	304	0%	260	31.2%	5	20%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_ARM-type_fold
ATP9A	10079	genome.wustl.edu	37	20	50273595	50273595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006045.1	-1	validated	p.I463T	1.000	108	0.9%	80	32.5%	19	31.5%	possibly_damaging(0.809)	deleterious(0)	deleterious(0.749)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
CTCFL	140690	genome.wustl.edu	37	20	56099179	56099179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_080618.2	-1	reviewed	p.K28R	0.000	293	0%	294	36.1%	0	-	benign(0.133)	tolerated(0.19)	neutral(0.060)	NULL
LAMA5	3911	genome.wustl.edu	37	20	60893990	60893990	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005560.3	-1	reviewed	p.A2317	0.578	9	0.000	5	0.800	45	51.1%	-	-	-	HMMPfam_Laminin_I
RPS21	6227	genome.wustl.edu	37	20	60963412	60963412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000337102	+1	known	p.R77C	0.998	351	0.3%	296	36.8%	2543	44.9%	probably_damaging(0.985)	tolerated(0.37)	neutral(0.451)	HMMPfam_Ribosomal_S21e
GMEB2	26205	genome.wustl.edu	37	20	62221978	62221978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012384.3	-1	reviewed	p.P353S	1.000	36	0%	23	39.1%	9	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TPTE	7179	genome.wustl.edu	37	21	10941969	10941969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_199261.2	-1	validated	p.R245H	0.981	676	0.3%	780	13.8%	1	0%	probably_damaging(0.97)	tolerated(0.07)	deleterious(0.732)	superfamily_(Phosphotyrosine protein) phosphatases II
ADAMTS1	9510	genome.wustl.edu	37	21	28210076	28210076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006988.3	-1	reviewed	p.C909Y	1.000	264	0%	261	31.8%	13	15.3%	possibly_damaging(0.764)	deleterious(0.02)	deleterious(0.666)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
DYRK1A	1859	genome.wustl.edu	37	21	38877625	38877626	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001396.3	+1	reviewed	p.G428fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK1A	1859	genome.wustl.edu	37	21	38877628	38877628	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001396.3	+1	reviewed	p.G428*	1.000	181	0%	167	34.1%	11	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRPM2	7226	genome.wustl.edu	37	21	45845625	45845625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003307.3	+1	reviewed	p.S1237N	0.000	28	0.000	7	0.571	26	57.6%	-	-	-	superfamily_Nudix
COL6A1	1291	genome.wustl.edu	37	21	47414123	47414123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001848.2	+1	reviewed	p.V460I	0.042	168	0.6%	115	35.7%	41	2.4%	unknown(0)	tolerated(0.28)	-	HMMPfam_Collagen
YBEY	54059	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AAA	rs71318058	byCluster;by1000genomes	TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_058181.1	+1	validated	e1+2	1.000:0.124	-	-	-	-	-	-	-	-	-	-
OR11H1	81061	genome.wustl.edu	37	22	16448955	16448955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001005239.1	-1	provisional	p.G284W	0.057	813	0.1%	663	17.3%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	HMMPfam_7tm_1,superfamily_SSF81321
COMT	1312	genome.wustl.edu	37	22	19951735	19951737	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_000754.3	+1	reviewed	p.K179in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Methyltransf_3,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SUSD2	56241	genome.wustl.edu	37	22	24581638	24581638	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_019601.3	+1	validated	p.Y360	0.009	14	0.000	8	0.875	2	0%	-	-	-	HMMPfam_AMOP,HMMSmart_AMOP
EMID1	129080	genome.wustl.edu	37	22	29627634	29627634	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000433143	+1	known	p.P76L	0.004	28	0%	14	42.9%	13	38.4%	-	-	-	HMMPfam_Collagen
FOXRED2	80020	genome.wustl.edu	37	22	36894057	36894057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001102371.1	-1	validated	p.D455N	0.133	120	0%	82	34.1%	23	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LGALS2	3957	genome.wustl.edu	37	22	37966633	37966633	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006498.2	-1	reviewed	p.Q67*	0.001	379	0%	220	30.9%	5	60%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
CACNA1I	8911	genome.wustl.edu	37	22	40075174	40075174	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_021096.3	+1	reviewed	p.S1706	0.997	28	0%	20	50%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MCHR1	2847	genome.wustl.edu	37	22	41077391	41077391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005297.3	+1	reviewed	p.S243N	1.000	91	0%	76	40.8%	2	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
XRCC6	2547	genome.wustl.edu	37	22	42054278	42054278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001469.3	+1	reviewed	p.V482M	1.000	288	0%	258	42.2%	566	46.8%	benign(0.09)	tolerated(0.07)	neutral(0.326)	HMMPfam_Ku_C,superfamily_SPOC-like
EFCAB6	64800	genome.wustl.edu	37	22	44031067	44031067	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_022785.2	-1	validated	p.D671	0.000	302	0%	227	30.4%	0	-	-	-	-	superfamily_EF-hand
PARVG	64098	genome.wustl.edu	37	22	44583758	44583758	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001137605.1	+1	validated	p.Q83*	1.000	189	0%	127	42.5%	3	0%	-	-	-	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
PKDREJ	10343	genome.wustl.edu	37	22	46654759	46654759	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_006071.1	-1	reviewed	p.Y1487	0.000	333	0%	263	36.5%	0	-	-	-	-	NULL
ZBED1	9189	genome.wustl.edu	37	X	2408224	2408224	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004729.3	-1	reviewed	p.A179	0.249	88	0%	43	51.2%	11	36.3%	-	-	-	NULL
ZNF645	158506	genome.wustl.edu	37	X	22291568	22291568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_152577.2	+1	provisional	p.R154C	0.000	109	0%	84	36.9%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
MAGEB4	4115	genome.wustl.edu	37	X	30260944	30260944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002367.3	+1	reviewed	p.D231G	0.000	232	0%	225	41.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_MAGE
CASK	8573	genome.wustl.edu	37	X	41448820	41448820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_003688.3	-1	reviewed	p.S394Y	1.000	682	0%	644	34.6%	21	0%	possibly_damaging(0.716)	deleterious(0.04)	deleterious(0.608)	HMMSmart_L27,HMMPfam_L27,superfamily_SSF101288
CACNA1F	778	genome.wustl.edu	37	X	49069162	49069162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_005183.2	-1	reviewed	p.R1314C	1.000	182	0%	161	11.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CLCN5	1184	genome.wustl.edu	37	X	49854898	49854898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001127898.1	+1	reviewed	p.R624W	0.670	269	0%	216	36.1%	4	25%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_Clc chloride channel
NUDT10	170685	genome.wustl.edu	37	X	51075904	51075904	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	ENST00000356450	+1	known	p.R29	0.994	154	0%	85	32.9%	0	-	-	-	-	HMMPfam_NUDIX,superfamily_Nudix
GPR173	54328	genome.wustl.edu	37	X	53106197	53106197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_018969.5	+1	reviewed	p.A132T	1.000	57	0%	36	33.3%	21	47.6%	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FGD1	2245	genome.wustl.edu	37	X	54494308	54494308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004463.2	-1	reviewed	p.V417I	0.971	85	0%	77	42.9%	55	100%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
KIF4A	24137	genome.wustl.edu	37	X	69553510	69553510	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_012310.4	+1	reviewed	p.A368	1.000	563	0%	550	32%	20	0%	-	-	-	NULL
ABCB7	22	genome.wustl.edu	37	X	74288927	74288927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_004299.3	-1	reviewed	p.Q526R	1.000	390	0%	391	37.1%	40	95%	possibly_damaging(0.901)	tolerated(0.05)	deleterious(0.702)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,superfamily_SSF52540
BRWD3	254065	genome.wustl.edu	37	X	79932480	79932480	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_153252.4	-1	reviewed	p.W1679*	1.000	1016	0.1%	689	34.5%	1	0%	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114427051	114427051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001145346.1	+1	validated	p.D1016V	0.062	27	0%	34	44.1%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
RAP2C	57826	genome.wustl.edu	37	X	131351260	131351260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_021183.3	-1	provisional	p.G13R	1.000	95	0%	73	35.6%	10	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CXorf40B	541578	genome.wustl.edu	37	X	149100980	149100980	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001013845.1	-1	validated	p.V87L	0.324	682	0%	548	24.8%	36	38.8%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
RENBP	5973	genome.wustl.edu	37	X	153206986	153206986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_002910.5	-1	reviewed	p.P297H	0.608	103	0%	84	41.7%	4	0%	possibly_damaging(0.44)	deleterious(0.01)	deleterious(0.549)	superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim
FLNA	2316	genome.wustl.edu	37	X	153581455	153581455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001110556.1	-1	reviewed	p.A2047D	1.000	114	0%	100	42%	825	39.6%	possibly_damaging(0.831)	deleterious(0)	deleterious(0.760)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153581456	153581456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZS-01A-11D-A122-09	TCGA-D1-A0ZS-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	144acec9-dfd7-4d4e-9f07-d442aacfd02d	38f7415d-db56-400f-821b-39a96e8f24c8	NM_001110556.1	-1	reviewed	p.A2047S	1.000	113	0.9%	99	44.4%	827	40.2%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
