Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
YRDC	79693	genome.wustl.edu	37	1	38270003	38270003	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_024640.3	-1	validated	p.P246	0.995	50	0%	40	52.5%	-	-	-	-	-	HMMPfam_Sua5_yciO_yrdC,superfamily_DHBP_synth_RibB-like_a/b_dom
SV2A	9900	genome.wustl.edu	37	1	149884905	149884905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_014849.3	-1	validated	p.R163H	1.000	27	0%	31	35.5%	-	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	superfamily_MFS general substrate transporter
GABPB2	126626	genome.wustl.edu	37	1	151090640	151090640	+	Missense_Mutation	SNP	G	G	A	rs77707485		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_144618.2	+1	validated	p.G419R	0.766	53	0%	60	36.7%	-	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173556830	173556830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_178527.3	-1	validated	p.R166H	0.021	94	0%	83	37.3%	-	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_Na_H_Exchanger
HMCN1	83872	genome.wustl.edu	37	1	185970489	185970489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_031935.2	+1	reviewed	p.L1377V	0.437	95	0%	75	34.7%	-	-	benign(0.032)	tolerated(0.31)	neutral(0.029)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TPO	7173	genome.wustl.edu	37	2	1437319	1437319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_000547.5	+1	reviewed	p.S97P	0.004	86	0%	78	24.4%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CAPN13	92291	genome.wustl.edu	37	2	30974078	30974078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_144575.2	-1	validated	p.Q376P	0.038	54	0%	56	33.9%	-	-	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_Calpain large subunit middle domain (domain III)
FOXD4L1	200350	genome.wustl.edu	37	2	114257058	114257059	+	In_Frame_Ins	INS	-	-	GGC	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_012184.4	+1	reviewed	p.78in_frame_insG	0.000:0.003	-	-	-	-	-	-	-	-	-	NULL
NRP2	8828	genome.wustl.edu	37	2	206659538	206659538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_201266.1	+1	reviewed	p.S851L	0.197	61	0%	47	44.7%	-	-	benign(0.037)	tolerated(0.67)	neutral(0.005)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215851301	215851301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_173076.2	-1	reviewed	p.L1376F	1.000	60	0%	48	39.6%	-	-	probably_damaging(0.984)	tolerated(1)	neutral(0.430)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_006218.2	+1	reviewed	p.H1047L	1.000	55	0%	108	79.6%	-	-	possibly_damaging(0.815)	tolerated(1)	neutral(0.307)	HMMSmart_PI3Kc,superfamily_Kinase_like
AMBN	258	genome.wustl.edu	37	4	71467327	71467327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_016519.4	+1	reviewed	p.V163I	0.000	44	0%	39	43.6%	-	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Amelin,HMMSmart_SM00817
FGF5	2250	genome.wustl.edu	37	4	81196107	81196107	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_004464.3	+1	reviewed	p.R134*	1.000	163	0%	129	46.5%	-	-	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
PRKG2	5593	genome.wustl.edu	37	4	82064021	82064021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_006259.1	-1	provisional	p.S445Y	1.000	72	0%	52	36.5%	-	-	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_Kinase_like
EGFLAM	133584	genome.wustl.edu	37	5	38352398	38352398	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_152403.2	+1	validated	p.S170	0.991	79	0%	71	54.9%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
HEATR7B2	133558	genome.wustl.edu	37	5	41004607	41004607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_173489.4	-1	validated	p.M1345I	0.000	114	0%	118	51.7%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_ARM repeat
BDP1	55814	genome.wustl.edu	37	5	70805897	70805897	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_018429.2	+1	reviewed	p.S993C	0.001	46	2.2%	63	22.2%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79741150	79741150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_001105251.1	+1	validated	p.D884Y	1.000	88	0%	90	40%	-	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
PCDHGA8	9708	genome.wustl.edu	37	5	140773876	140773876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_032088.1	+1	reviewed	p.A499V	0.000	54	0%	71	46.5%	-	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140810920	140810920	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_003735.2	+1	reviewed	p.R198	0.969	15	0%	32	34.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
OR2Y1	134083	genome.wustl.edu	37	5	180166827	180166827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_001001657.1	-1	provisional	p.V78M	0.006	45	0%	56	44.6%	-	-	benign(0.26)	tolerated(0.06)	neutral(0.350)	HMMPfam_7tm_1,superfamily_SSF81321
ATXN1	6310	genome.wustl.edu	37	6	16326633	16326633	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_000332.3	-1	reviewed	p.R637*	1.000	54	0%	37	40.5%	-	-	-	-	-	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain
DNAH8	1769	genome.wustl.edu	37	6	38994403	38994403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_001371.2	+1	validated	p.V4382A	1.000	46	0%	41	41.5%	-	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMPfam_Dynein_heavy
SLC25A27	9481	genome.wustl.edu	37	6	46638862	46638862	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_004277.3	+1	reviewed	e8-1	1.000	113	0%	86	45.3%	-	-	-	-	-	-
ZNF273	10793	genome.wustl.edu	37	7	64363689	64363689	+	RNA	SNP	C	C	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NR_003099.1	+1	reviewed	NULL	0.004	91	0%	73	43.8%	-	-	-	-	-	-
LAMB1	3912	genome.wustl.edu	37	7	107605112	107605112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_002291.2	-1	reviewed	p.Q528R	1.000	82	0%	54	42.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
GAPVD1	26130	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-	rs143312600	byCluster;by1000genomes	TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	ENST00000469528	+1	known	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	-	-	-	-	-	-	-
ADAMTS13	11093	genome.wustl.edu	37	9	136308626	136308626	+	Silent	SNP	G	G	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_139025.3	+1	reviewed	p.G788	0.035	7	0.000	8	0.750	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43777428	43777428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_025003.3	-1	validated	p.S1577Y	1.000	139	0%	122	32.8%	-	-	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57975695	57975695	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_004984.2	+1	reviewed	p.G984	0.001	51	0%	67	46.3%	-	-	-	-	-	NULL
SSH1	54434	genome.wustl.edu	37	12	109182529	109182529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_018984.3	-1	validated	p.N795K	0.004	46	0%	69	43.5%	-	-	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124333323	124333323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_207437.3	+1	validated	p.G1881V	1.000	126	0%	92	39.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
STX2	2054	genome.wustl.edu	37	12	131293192	131293192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_194356.1	-1	reviewed	p.R113Q	0.990	69	0%	74	54.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
ANGEL1	23357	genome.wustl.edu	37	14	77275424	77275424	+	Silent	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_015305.3	-1	validated	p.P209	0.969	50	0%	52	26.9%	-	-	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48719776	48719776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_000138.4	-1	reviewed	p.T2398P	1.000	70	0%	53	35.8%	-	-	-	-	-	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
MRPS34	65993	genome.wustl.edu	37	16	1822797	1822798	+	Splice_Site	INS	-	-	ACCT	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_023936.1	-1	reviewed	e1+2	0.913:1.000	-	-	-	-	-	-	-	-	-	-
C16orf5	29965	genome.wustl.edu	37	16	4563797	4563797	+	Silent	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_013399.2	-1	validated	p.A47	0.997	14	0%	15	53.3%	-	-	-	-	-	NULL
MPV17L	255027	genome.wustl.edu	37	16	15494704	15494704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_001128423.1	+1	validated	p.N124T	1.000	132	0%	115	44.3%	-	-	benign(0.019)	tolerated(0.53)	neutral(0.009)	HMMPfam_Mpv17_PMP22
PALB2	79728	genome.wustl.edu	37	16	23646281	23646281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_024675.3	-1	reviewed	p.P529L	0.000	165	0%	142	43.7%	-	-	benign(0)	tolerated(1)	-	NULL
ZNF267	10308	genome.wustl.edu	37	16	31926334	31926334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_003414.4	+1	validated	p.Q255R	0.021	23	0%	31	35.5%	-	-	benign(0.048)	tolerated(0.71)	neutral(0.005)	superfamily_C2H2 and C2HC zinc fingers
CAMTA2	23125	genome.wustl.edu	37	17	4881918	4881918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_015099.3	-1	validated	p.V549G	1.000	24	0.000	5	0.800	-	-	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_TIG,superfamily_E set domains
C17orf74	201243	genome.wustl.edu	37	17	7329668	7329668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_175734.4	+1	validated	p.L120F	0.000	84	0%	53	18.9%	-	-	possibly_damaging(0.951)	tolerated(0.24)	neutral(0.431)	NULL
TP53	7157	genome.wustl.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_000546.4	-1	reviewed	p.H179R	1.000	57	0%	23	91.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
CABYR	26256	genome.wustl.edu	37	18	21735947	21735950	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	TCTC	TCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_012189.2	+1	reviewed	p.V161fs	0.563:0.550:0.473:0.479	-	-	-	-	-	-	-	-	-	NULL
DSC1	1823	genome.wustl.edu	37	18	28725683	28725683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_024421.2	-1	reviewed	p.T277S	1.000	231	0%	157	42.7%	-	-	possibly_damaging(0.716)	tolerated(0.59)	neutral(0.264)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
C18orf54	162681	genome.wustl.edu	37	18	51888267	51888267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_173529.4	+1	validated	p.D180N	0.058	54	0%	49	44.9%	-	-	benign(0.034)	tolerated(0.36)	neutral(0.022)	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19770451	19770451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_020410.2	-1	validated	p.D212E	0.777	21	0%	31	45.2%	-	-	benign(0.01)	tolerated(0.63)	neutral(0.004)	NULL
RYR1	6261	genome.wustl.edu	37	19	38939046	38939046	+	Silent	SNP	C	C	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_000540.2	+1	reviewed	p.V284	0.968	25	0%	20	40%	-	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
KLK7	5650	genome.wustl.edu	37	19	51485078	51485078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_005046.2	-1	reviewed	p.G56*	0.105	52	0%	27	22.2%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZFP64	55734	genome.wustl.edu	37	20	50769218	50769218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_018197.2	-1	validated	p.V505L	0.494	27	0%	24	54.2%	-	-	benign(0.008)	tolerated(0.27)	neutral(0.034)	NULL
ADAMTS5	11096	genome.wustl.edu	37	21	28305362	28305362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_007038.3	-1	reviewed	p.T564M	1.000	65	0%	44	45.5%	-	-	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	superfamily_TSP-1 type 1 repeat
TSPEAR	54084	genome.wustl.edu	37	21	45987842	45987842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_144991.2	-1	provisional	p.A44T	0.000	37	0%	28	46.4%	-	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
YBEY	54059	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AAAAA	rs71318058	byCluster;by1000genomes	TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_058181.1	+1	validated	e1+2	1.000:0.124	-	-	-	-	-	-	-	-	-	-
CHEK2	11200	genome.wustl.edu	37	22	29107950	29107950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	NM_001005735.1	-1	reviewed	p.A290T	1.000	123	0%	115	38.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C22orf40	150383	genome.wustl.edu	37	22	46642638	46642638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A1NX-01A-11D-A16D-09	TCGA-D1-A1NX-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a04061f-7b84-4f8c-9409-f1165334f5d5	960f4762-e019-4e7c-bdc4-c160befcc24b	ENST00000404744	-1	known	p.C95F	0.001	3	0.000	4	1.000	-	-	unknown(0)	deleterious(0)	-	NULL
