Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PRDM16	63976	genome.wustl.edu	37	1	3329209	3329209	+	Silent	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_022114.3	+1	reviewed	p.N816	1.000	4	0.000	8	0.875	-	-	-	-	-	NULL
AJAP1	55966	genome.wustl.edu	37	1	4829952	4829952	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001042478.1	+1	validated	p.L290H	1.000	138	0%	115	50.4%	-	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	NULL
ELAVL4	1996	genome.wustl.edu	37	1	50659454	50659454	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001144775.1	+1	validated	p.P141	0.955	55	0%	47	53.2%	-	-	-	-	-	superfamily_SSF54928
SRSF11	9295	genome.wustl.edu	37	1	70703152	70703152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_004768.2	+1	reviewed	p.S212L	1.000	122	0%	88	25%	-	-	unknown(0)	tolerated(0.11)	-	NULL
GBP7	388646	genome.wustl.edu	37	1	89630419	89630419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_207398.2	-1	validated	p.E105*	0.998	75	0%	93	19.4%	-	-	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD58	965	genome.wustl.edu	37	1	117078739	117078739	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001779.2	-1	reviewed	p.W159*	0.077	67	0%	70	30%	-	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152193532	152193532	+	Silent	SNP	G	G	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001009931.1	-1	validated	p.G191	0.000	72	0%	58	25.9%	-	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152279728	152279728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_002016.1	-1	reviewed	p.G2545A	0.002	213	0%	181	24.3%	-	-	unknown(0)	tolerated(0.69)	-	HMMPfam_Filaggrin
FCRL5	83416	genome.wustl.edu	37	1	157485644	157485644	+	Silent	SNP	A	A	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_031281.2	-1	validated	p.H944	0.000	50	0%	58	24.1%	-	-	-	-	-	NULL
ASPM	259266	genome.wustl.edu	37	1	197056094	197056094	+	Silent	SNP	T	T	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_018136.4	-1	reviewed	p.R3390	0.997	73	0%	68	23.5%	-	-	-	-	-	NULL
SLC30A1	7779	genome.wustl.edu	37	1	211751381	211751381	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_021194.2	-1	validated	p.L192fs	0.997	-	-	-	-	-	-	-	-	-	HMMPfam_Cation_efflux
LOC388946	388946	genome.wustl.edu	37	2	46707884	46707884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001145051.1	+1	validated	p.Q153R	0.238	14	0%	16	31.2%	-	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
AFF3	3899	genome.wustl.edu	37	2	100266104	100266104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001025108.1	-1	reviewed	p.R415C	1.000	55	0%	57	42.1%	-	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_AF-4
SCN3A	6328	genome.wustl.edu	37	2	165947296	165947296	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_006922.3	-1	reviewed	p.D1789	1.000	99	0%	102	14.7%	-	-	-	-	-	superfamily_SSF81324
RESP18	389075	genome.wustl.edu	37	2	220193912	220193912	+	Silent	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001007089.3	-1	validated	p.L176	0.014	49	0%	35	17.1%	-	-	-	-	-	NULL
ECEL1	9427	genome.wustl.edu	37	2	233344881	233344890	+	Frame_Shift_Del	DEL	GTGGGCAGGG	GTGGGCAGGG	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	GTGGGCAGGG	GTGGGCAGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_004826.2	-1	validated	p.N767fs	1.000:1.000:0.989:0.223:0.205:0.462:0.467:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
SI	6476	genome.wustl.edu	37	3	164786560	164786560	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001041.3	-1	reviewed	p.S145C	0.000	109	0%	116	23.3%	-	-	possibly_damaging(0.523)	deleterious(0.05)	deleterious(0.522)	NULL
NOA1	84273	genome.wustl.edu	37	4	57842835	57842835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_032313.2	-1	provisional	p.S306F	0.001	12	0%	15	53.3%	-	-	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	superfamily_SSF52540
UTP3	57050	genome.wustl.edu	37	4	71554691	71554693	+	In_Frame_Del	DEL	GGA	GGA	-	rs146575538	by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_020368.2	+1	validated	p.E103in_frame_del	0.002:0.002:0.002	-	-	-	-	-	-	-	-	-	NULL
HNRNPD	3184	genome.wustl.edu	37	4	83278008	83278013	+	In_Frame_Del	DEL	TGCTGA	TGCTGA	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	TGCTGA	TGCTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_031370.2	-1	reviewed	p.YQQQQQ263in_frame_del*	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_RNA-binding domain RBD
FBXW7	55294	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_033632.2	-1	reviewed	p.R465C	1.000	86	0%	62	54.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CTSO	1519	genome.wustl.edu	37	4	156850802	156850802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001334.2	-1	reviewed	p.I244V	0.000	78	0%	45	11.1%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
GLRB	2743	genome.wustl.edu	37	4	158058015	158058015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_000824.4	+1	reviewed	p.R196P	0.993	147	0%	150	23.3%	-	-	possibly_damaging(0.835)	tolerated(0.27)	neutral(0.352)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL
ERBB2IP	55914	genome.wustl.edu	37	5	65349762	65349769	+	Frame_Shift_Del	DEL	CATAACTA	CATAACTA	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	CATAACTA	CATAACTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_018695.2	+1	reviewed	p.S872fs	0.996:1.000:1.000:1.000:1.000:1.000:0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
PPP2CA	5515	genome.wustl.edu	37	5	133534831	133534831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_002715.2	-1	reviewed	p.R268H	1.000	65	0%	69	63.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
PCDHGB1	56104	genome.wustl.edu	37	5	140731361	140731361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_018922.2	+1	reviewed	p.A512T	1.000	7	0.000	12	0.667	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH12	51294	genome.wustl.edu	37	5	141324966	141324967	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCTGCC	rs66773906		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_016580.2	-1	reviewed	p.1178in_frame_insGSSSSS	0.002:0.001	-	-	-	-	-	-	-	-	-	NULL
COL19A1	1310	genome.wustl.edu	37	6	70639345	70639345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001858.4	+1	reviewed	p.K140T	1.000	94	0%	56	16.1%	-	-	unknown(0)	tolerated(0.08)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
CLVS2	134829	genome.wustl.edu	37	6	123332253	123332253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001010852.2	+1	provisional	p.Q171H	1.000	83	0%	68	11.8%	-	-	probably_damaging(0.989)	tolerated(0.23)	deleterious(0.481)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
PTPRK	5796	genome.wustl.edu	37	6	128505748	128505748	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001135648.1	-1	validated	p.R331*	1.000	87	0%	61	47.5%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SCAF8	22828	genome.wustl.edu	37	6	155129895	155129895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_014892.3	+1	validated	p.R397C	1.000	91	0%	85	43.5%	-	-	unknown(0)	deleterious(0)	-	NULL
OCM	654231	genome.wustl.edu	37	7	5922122	5922122	+	Splice_Site	SNP	A	A	G	rs193133847	by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001097622.1	+1	validated	e2-2	1.000	66	0%	76	14.5%	-	-	-	-	-	-
CREB5	9586	genome.wustl.edu	37	7	28857730	28857730	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_182898.2	+1	reviewed	p.Q433*	1.000	76	0%	88	31.8%	-	-	-	-	-	HMMSmart_BRLZ,HMMPfam_bZIP_1
ABCA13	154664	genome.wustl.edu	37	7	48390326	48390326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_152701.3	+1	reviewed	p.V3431M	0.350	78	0%	101	48.5%	-	-	probably_damaging(1)	-	-	NULL
TYW1	55253	genome.wustl.edu	37	7	66660159	66660159	+	Silent	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_018264.2	+1	validated	p.G604	1.000	72	0%	35	42.9%	-	-	-	-	-	HMMPfam_Wyosine_form,superfamily_Radical SAM enzymes
GIMAP8	155038	genome.wustl.edu	37	7	150174275	150174275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_175571.2	+1	reviewed	p.R469W	0.000	52	0%	36	27.8%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_AIG1,superfamily_SSF52540
CSMD1	64478	genome.wustl.edu	37	8	2811774	2811774	+	Silent	SNP	T	T	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_033225.5	-1	validated	p.E3338	1.000	86	0%	75	24%	-	-	-	-	-	NULL
VDAC3	7419	genome.wustl.edu	37	8	42256286	42256286	+	Silent	SNP	A	A	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001135694.1	+1	validated	p.L59	1.000	38	0%	69	14.5%	-	-	-	-	-	HMMPfam_Porin_3
EPPK1	83481	genome.wustl.edu	37	8	144940666	144940666	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_031308.1	-1	validated	p.G2252	0.192	33	0%	62	9.7%	-	-	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
LOC730110	730110	genome.wustl.edu	37	9	35148779	35148779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	XM_002342891.1	-1	model	p.Q135E	0.175	62	0%	55	23.6%	-	-	-	-	-	NULL
LOC642236	642236	genome.wustl.edu	37	9	68438558	68438560	+	RNA	DEL	CTT	CTT	-	rs144201632	byCluster;by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	XR_041085.2	-1	model	NULL	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
C9orf174	100499483	genome.wustl.edu	37	9	100056305	100056305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_020893.1	+1	predicted	p.L55M	1.000	68	0%	62	29%	-	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
C9orf156	51531	genome.wustl.edu	37	9	100672881	100672881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_016481.3	-1	validated	p.S143P	1.000	52	0%	32	43.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0066
C10orf71	118461	genome.wustl.edu	37	10	50531010	50531010	+	Silent	SNP	C	C	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001135196.1	+1	validated	p.V140	0.064	34	0%	24	66.7%	-	-	-	-	-	NULL
ACADSB	36	genome.wustl.edu	37	10	124797267	124797267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001609.3	+1	reviewed	p.K69N	0.986	27	0%	31	19.4%	-	-	benign(0.023)	tolerated(0.16)	neutral(0.060)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
DCDC1	341019	genome.wustl.edu	37	11	31327282	31327282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_181807.2	-1	validated	p.A212T	0.866	48	0%	58	34.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF89837
PAMR1	25891	genome.wustl.edu	37	11	35454061	35454061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_015430.2	-1	validated	p.A686V	0.976	25	0%	25	24%	-	-	benign(0.011)	tolerated(0.79)	neutral(0.002)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NRXN2	9379	genome.wustl.edu	37	11	64436059	64436059	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	ENST00000437746	-1	known	p.R180W	1.000	47	0%	30	13.3%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SLC36A4	120103	genome.wustl.edu	37	11	92914877	92914877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_152313.2	-1	provisional	p.Q145H	1.000	56	0%	55	21.8%	-	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMPfam_Aa_trans
CHD4	1108	genome.wustl.edu	37	12	6701583	6701583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001273.2	-1	reviewed	p.R975H	1.000	33	0%	49	46.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
CAPZA3	93661	genome.wustl.edu	37	12	18891555	18891555	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_033328.2	+1	reviewed	p.R118T	0.990	45	0%	51	25.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
KRT4	3851	genome.wustl.edu	37	12	53204567	53204567	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_002272.2	-1	reviewed	p.A311	0.603	110	0%	84	20.2%	-	-	-	-	-	HMMPfam_Filament
ENSG00000247550	0	genome.wustl.edu	37	12	53433649	53433650	+	RNA	INS	-	-	T	rs55962315	byCluster	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	ENST00000499537	-1	novel	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
AMHR2	269	genome.wustl.edu	37	12	53819243	53819243	+	Silent	SNP	G	G	A	rs35355410	byCluster;byFrequency;by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_020547.2	+1	reviewed	p.L169	0.731	43	0%	41	31.7%	-	-	-	-	-	NULL
SLC5A8	160728	genome.wustl.edu	37	12	101551143	101551143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_145913.3	-1	validated	p.E583K	0.991	72	0%	54	14.8%	-	-	benign(0.15)	deleterious(0.04)	neutral(0.362)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109949051	109949051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_130466.2	+1	reviewed	p.D633E	1.000	81	1.2%	48	77.1%	-	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24530804	24530804	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_138360.3	+1	validated	p.E801D	1.000	23	0%	40	15%	-	-	unknown(0)	deleterious(0.04)	-	NULL
HECTD1	25831	genome.wustl.edu	37	14	31647263	31647263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_015382.2	-1	validated	p.N113S	1.000	82	0%	126	11.9%	-	-	benign(0.003)	tolerated(1)	-	superfamily_ARM repeat
C14orf39	317761	genome.wustl.edu	37	14	60935176	60935176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_174978.2	-1	validated	p.E252K	1.000	242	0%	294	29.3%	-	-	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
FLVCR2	55640	genome.wustl.edu	37	14	76090958	76090958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_017791.2	+1	validated	p.F272C	1.000	62	0%	77	35.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CLMN	79789	genome.wustl.edu	37	14	95669692	95669692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_024734.3	-1	validated	p.S665F	0.981	21	0%	21	52.4%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
IGHV1-18	28468	genome.wustl.edu	37	14	106641961	106641961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	ENST00000390605	-1	known	p.A13P	0.243	89	1.1%	83	33.7%	-	-	possibly_damaging(0.609)	deleterious(0.02)	deleterious(0.594)	NULL
ARIH1	25820	genome.wustl.edu	37	15	72767053	72767055	+	In_Frame_Del	DEL	GAG	GAG	-	rs143905502	by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_005744.3	+1	validated	p.E28in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NLRC3	197358	genome.wustl.edu	37	16	3613724	3613724	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_178844.2	-1	validated	p.F405fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SHISA9	729993	genome.wustl.edu	37	16	13297318	13297318	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001145204.2	+1	validated	p.S294	0.038	73	0%	55	43.6%	-	-	-	-	-	NULL
CPNE2	221184	genome.wustl.edu	37	16	57157363	57157363	+	Missense_Mutation	SNP	G	G	A	rs138717944		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_152727.4	+1	reviewed	p.G302E	1.000	43	0%	29	27.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53300
GOT2	2806	genome.wustl.edu	37	16	58743428	58743428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_002080.2	-1	reviewed	p.R355G	0.999	38	0%	33	48.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
TERF2	7014	genome.wustl.edu	37	16	69404410	69404410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_005652.2	-1	reviewed	p.D230fs	0.677	-	-	-	-	-	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
GLG1	2734	genome.wustl.edu	37	16	74501698	74501698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_012201.5	-1	validated	p.D829H	1.000	84	0%	58	29.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cys_rich_FGFR
DNAAF1	123872	genome.wustl.edu	37	16	84203693	84203693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_178452.4	+1	reviewed	p.T420N	0.001	31	0%	16	37.5%	-	-	benign(0.288)	deleterious(0)	deleterious(0.533)	NULL
TP53	7157	genome.wustl.edu	37	17	7577571	7577571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_000546.4	-1	reviewed	p.M237K	1.000	31	0%	22	86.4%	-	-	benign(0.283)	deleterious(0)	deleterious(0.531)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
ARHGAP44	9912	genome.wustl.edu	37	17	12799784	12799784	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_014859.4	+1	validated	p.A52P	0.950	44	0%	17	35.3%	-	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_BAR,HMMSmart_BAR
TMEM132E	124842	genome.wustl.edu	37	17	32962028	32962028	+	Silent	SNP	G	G	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_207313.1	+1	provisional	p.R543	1.000	19	0%	26	26.9%	-	-	-	-	-	NULL
SNF8	11267	genome.wustl.edu	37	17	47014652	47014652	+	Frame_Shift_Del	DEL	T	T	-	rs146579683	byCluster;by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	ENST00000507302	-1	known	p.G83fs	0.000	-	-	-	-	-	-	-	-	-	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
C18orf54	162681	genome.wustl.edu	37	18	51888293	51888293	+	Silent	SNP	C	C	G	rs192378063	by1000genomes	TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_173529.4	+1	validated	p.R188	0.016	27	0%	38	15.8%	-	-	-	-	-	NULL
SERPINB2	5055	genome.wustl.edu	37	18	61562611	61562611	+	Silent	SNP	T	T	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001143818.1	+1	validated	p.I94	1.000	77	0%	66	25.8%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
ZNF558	148156	genome.wustl.edu	37	19	8922415	8922415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_144693.1	-1	provisional	p.L251F	0.986	73	0%	47	78.7%	-	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNN1	1264	genome.wustl.edu	37	19	11658655	11658655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001299.4	+1	validated	p.A145V	0.998	51	0%	58	17.2%	-	-	possibly_damaging(0.796)	deleterious(0)	deleterious(0.744)	superfamily_Calponin-homology domain CH-domain
LOC100287841	100287841	genome.wustl.edu	37	19	12359314	12359314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	XM_002343641.1	-1	model	p.S134C	0.746	4	0.000	12	0.333	-	-	benign(0.003)	tolerated(0.15)	neutral(0.241)	HMMSmart_ZnF_C2H2
CPAMD8	27151	genome.wustl.edu	37	19	17056469	17056469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_015692.2	-1	validated	p.D942N	0.996	33	0%	82	14.6%	-	-	benign(0.025)	tolerated(0.29)	neutral(0.030)	NULL
IL4I1	259307	genome.wustl.edu	37	19	50404910	50404910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_172374.1	-1	reviewed	p.Q22R	0.993	51	0%	42	23.8%	-	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	NULL
FAM3B	54097	genome.wustl.edu	37	21	42694872	42694872	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_058186.3	+1	validated	p.V14	0.000	116	0%	106	13.2%	-	-	-	-	-	PatternScan_AMINO_ACID_PERMEASE_1
HMGXB4	10042	genome.wustl.edu	37	22	35661575	35661576	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001003681.2	+1	validated	p.R402fs	0.996:1.000	-	-	-	-	-	-	-	-	-	superfamily_HMG-box
ELFN2	114794	genome.wustl.edu	37	22	37771002	37771002	+	Silent	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_052906.3	-1	validated	p.C191	0.859	9	0.000	14	0.571	-	-	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
CERK	64781	genome.wustl.edu	37	22	47087620	47087620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_022766.5	-1	validated	p.T394I	0.493	39	0%	28	25%	-	-	benign(0.043)	deleterious(0.04)	neutral(0.351)	NULL
GEMIN8	54960	genome.wustl.edu	37	X	14038612	14038612	+	Silent	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001042479.1	-1	reviewed	p.P19	0.000	41	0%	24	45.8%	-	-	-	-	-	NULL
DCAF8L2	347442	genome.wustl.edu	37	X	27765667	27765667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_001136533.1	+1	provisional	p.R219C	0.014	47	0%	23	47.8%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CYLC1	1538	genome.wustl.edu	37	X	83129139	83129139	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EO-A1Y5-01A-11D-A159-09	TCGA-EO-A1Y5-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d8fe3138-f81a-4830-b41d-cb2a7b8244f7	1e2c6a25-f60a-4013-b08e-a4305c4d4567	NM_021118.1	+1	provisional	p.K475*	0.016	30	0%	22	31.8%	-	-	-	-	-	NULL
