Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TNFRSF8	943	genome.wustl.edu	37	1	12164472	12164472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001243.3	+1	reviewed	p.S102Y	0.632	67	0%	192	19.8%	3	0%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
SPEN	23013	genome.wustl.edu	37	1	16199400	16199400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015001.2	+1	reviewed	p.S58T	1.000	112	0%	279	16.5%	2	50%	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
LDLRAP1	26119	genome.wustl.edu	37	1	25883750	25883750	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015627.2	+1	reviewed	p.R151G	1.000	20	0%	71	25.4%	16	62.5%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
AHDC1	27245	genome.wustl.edu	37	1	27875518	27875520	+	In_Frame_Del	DEL	AGG	AGG	-	rs111827498	byCluster;by1000genomes	TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001029882.2	-1	validated	p.S1036in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RNF19B	127544	genome.wustl.edu	37	1	33402720	33402720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_153341.2	-1	validated	p.G629E	0.162	250	0%	621	15.6%	66	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35836101	35836101	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005095.2	+1	validated	p.Q352*	1.000	264	0.4%	387	33.6%	1	100%	-	-	-	HMMPfam_zf-FCS,HMMSmart_SM00746
EPS15	2060	genome.wustl.edu	37	1	51913765	51913765	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001981.2	-1	reviewed	p.P202A	1.000	208	0%	353	18.1%	8	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00027,superfamily_EF-hand
VCAM1	7412	genome.wustl.edu	37	1	101196883	101196883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001078.2	+1	reviewed	p.T445S	0.000	229	0%	374	17.9%	15	0%	benign(0.001)	tolerated(0.75)	neutral(0.002)	HMMPfam_C2-set,superfamily_Immunoglobulin
CLCC1	23155	genome.wustl.edu	37	1	109474022	109474022	+	Frame_Shift_Del	DEL	G	G	-	rs144751975	by1000genomes	TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000369972	-1	known	p.L249fs	0.000	-	-	-	-	-	-	-	-	-	HMMPfam_MCLC
MAN1A2	10905	genome.wustl.edu	37	1	117944984	117944984	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006699.3	+1	validated	p.P160R	1.000	484	0%	756	15.6%	6	66.6%	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
FMO5	2330	genome.wustl.edu	37	1	146680608	146680608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001461.2	-1	reviewed	p.F212L	1.000	143	0%	399	16.8%	0	-	benign(0.024)	tolerated(0.12)	neutral(0.262)	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain
OTUD7B	56957	genome.wustl.edu	37	1	149916930	149916930	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_020205.2	-1	validated	p.S453*	1.000	97	0%	256	27.7%	12	58.3%	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150917638	150917638	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000368960	+1	known	p.*398Y	0.000	47	0%	162	16%	2	0%	-	-	-	NULL
CERS2	29956	genome.wustl.edu	37	1	150939619	150939619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_022075.3	-1	reviewed	p.W224C	1.000	190	0%	574	13.8%	98	17.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
FLG2	388698	genome.wustl.edu	37	1	152325313	152325313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001014342.2	-1	provisional	p.R1650I	0.000	769	0%	1799	41.3%	0	-	benign(0.049)	tolerated(0.17)	neutral(0.062)	NULL
NES	10763	genome.wustl.edu	37	1	156639679	156639679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006617.1	-1	reviewed	p.A1434D	0.001	27	0%	121	14.9%	6	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
OR10T2	128360	genome.wustl.edu	37	1	158368476	158368476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001004475.1	-1	provisional	p.R261W	0.003	123	0%	284	24.6%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
IFI16	3428	genome.wustl.edu	37	1	159019380	159019380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000295809	+1	known	p.F552L	0.001	418	0%	877	13.5%	24	0%	benign(0.043)	tolerated(0.65)	neutral(0.005)	NULL
KIFAP3	22920	genome.wustl.edu	37	1	170001029	170001029	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014970.2	-1	reviewed	p.R280P	1.000	425	0%	737	12.1%	11	18.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_KAP,superfamily_ARM repeat
CNTN2	6900	genome.wustl.edu	37	1	205022358	205022358	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005076.2	+1	reviewed	p.A15	0.000	12	0%	45	28.9%	0	-	-	-	-	NULL
LPIN1	23175	genome.wustl.edu	37	2	11913779	11913779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_145693.1	+1	reviewed	p.D210E	0.993	153	0%	279	21.9%	6	0%	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698753	17698753	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001099218.2	-1	provisional	p.L310	0.983	167	0%	187	20.9%	0	-	-	-	-	NULL
VIT	5212	genome.wustl.edu	37	2	37035894	37035894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_053276.3	+1	validated	p.E557K	1.000	50	0%	102	21.6%	0	-	probably_damaging(0.996)	tolerated(0.22)	deleterious(0.504)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
GNLY	10578	genome.wustl.edu	37	2	85924688	85924688	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006433.3	+1	reviewed	p.D105	0.000	29	0%	49	18.4%	29	0%	-	-	-	HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin
FAHD2A	51011	genome.wustl.edu	37	2	96072864	96072864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_016044.2	+1	validated	p.V141M	1.000	80	0%	163	17.2%	26	7.6%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
POU3F3	5455	genome.wustl.edu	37	2	105473102	105473102	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006236.1	+1	provisional	p.P378	1.000	18	0%	47	29.8%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
IL37	27178	genome.wustl.edu	37	2	113671373	113671373	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014439.3	+1	reviewed	p.P29	0.000	37	0%	134	23.9%	0	-	-	-	-	NULL
C2orf69	205327	genome.wustl.edu	37	2	200790180	200790180	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_153689.5	+1	validated	p.E243	0.474	202	0%	263	25.1%	2	0%	-	-	-	HMMPfam_UPF0565
CACNA2D3	55799	genome.wustl.edu	37	3	55052334	55052334	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_018398.2	+1	reviewed	p.D993H	1.000	80	0%	102	23.5%	1	0%	benign(0.394)	tolerated(0.11)	neutral(0.398)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119102004	119102005	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_020754.2	+1	reviewed	p.E206fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SI	6476	genome.wustl.edu	37	3	164733771	164733771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001041.3	-1	reviewed	p.R1286K	0.358	454	0%	953	11.3%	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
TNK2	10188	genome.wustl.edu	37	3	195608999	195608999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001010938.1	-1	reviewed	p.D333E	1.000	19	0%	65	13.8%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DHX15	1665	genome.wustl.edu	37	4	24578163	24578163	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001358.2	-1	reviewed	p.I70	1.000	234	0%	426	18.5%	100	18%	-	-	-	NULL
SLC34A2	10568	genome.wustl.edu	37	4	25669569	25669569	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006424.2	+1	reviewed	p.T197	0.996	51	0%	85	20%	243	26.7%	-	-	-	HMMPfam_Na_Pi_cotrans
DCK	1633	genome.wustl.edu	37	4	71889365	71889365	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_000788.2	+1	reviewed	p.N164T	0.995	147	0%	244	25.4%	15	33.3%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_dNK,superfamily_SSF52540
SMAD1	4086	genome.wustl.edu	37	4	146475175	146475175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001003688.1	+1	reviewed	p.R413C	1.000	382	0%	504	52.6%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
GPM6A	2823	genome.wustl.edu	37	4	176556076	176556076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005277.3	-1	validated	p.R273W	1.000	164	0%	239	37.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSPA4	3308	genome.wustl.edu	37	5	132400704	132400704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_002154.3	+1	validated	p.S47L	1.000	222	0%	431	27.1%	22	45.4%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_HSP70,superfamily_SSF53067
SLC4A9	83697	genome.wustl.edu	37	5	139744004	139744004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_031467.2	+1	validated	p.T482N	0.837	31	0%	63	27%	0	-	possibly_damaging(0.704)	deleterious(0.01)	deleterious(0.659)	HMMPfam_HCO3_cotransp
PCDHGB5	56101	genome.wustl.edu	37	5	140779296	140779296	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_018925.2	+1	reviewed	p.G534	1.000	15	0%	29	41.4%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CYFIP2	26999	genome.wustl.edu	37	5	156760372	156760372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001037332.2	+1	validated	p.T768I	1.000	391	0%	644	25%	39	38.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_FragX_IP
C6orf201	404220	genome.wustl.edu	37	6	4099434	4099434	+	Splice_Site	SNP	T	T	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001085401.1	+1	validated	e2+2	0.998	114	0%	236	12.3%	0	-	-	-	-	-
OR2B6	26212	genome.wustl.edu	37	6	27925216	27925216	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_012367.1	+1	provisional	p.L66	0.750	363	0%	454	21.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GNL1	2794	genome.wustl.edu	37	6	30522855	30522855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005275.3	-1	validated	p.R118Q	0.049	140	0%	253	17.8%	28	25%	benign(0.003)	tolerated(0.4)	neutral(0.016)	NULL
GSTA5	221357	genome.wustl.edu	37	6	52697702	52697702	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_153699.1	-1	provisional	p.V167	0.644	258	0.4%	822	13.4%	0	-	-	-	-	HMMPfam_GST_C,superfamily_GST_C_like
COL9A1	1297	genome.wustl.edu	37	6	71010027	71010027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001851.4	-1	reviewed	p.Q51*	1.000	143	0%	247	16.2%	0	-	-	-	-	HMMSmart_TSPN
IBTK	25998	genome.wustl.edu	37	6	82943921	82943921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015525.2	-1	reviewed	p.L125F	1.000	63	0%	108	36.1%	2	50%	probably_damaging(0.961)	tolerated(0.17)	neutral(0.463)	superfamily_Ankyrin repeat
FAXC	84553	genome.wustl.edu	37	6	99729107	99729107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_032511.2	-1	validated	p.T388I	1.000	303	0%	584	27.4%	0	-	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	NULL
GRIK2	2898	genome.wustl.edu	37	6	102074349	102074349	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_021956.4	+1	reviewed	p.G126	0.970	404	0%	500	19.2%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
SMPD2	6610	genome.wustl.edu	37	6	109764976	109764976	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_003080.2	+1	validated	p.N380	0.849	11	0%	35	17.1%	18	33.3%	-	-	-	NULL
PTPRK	5796	genome.wustl.edu	37	6	128304103	128304103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001135648.1	-1	validated	p.D1143G	1.000	255	0%	320	23.1%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LOC100289471	100289471	genome.wustl.edu	37	6	169649046	169649046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	XM_002342681.1	+1	model	p.R111C	0.000	26	0%	59	22%	24	0%	-	-	-	NULL
FERD3L	222894	genome.wustl.edu	37	7	19184613	19184613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_152898.2	-1	validated	p.R125W	1.000	102	0%	144	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
ABCA13	154664	genome.wustl.edu	37	7	48349686	48349686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_152701.3	+1	reviewed	p.S3155C	0.002	240	0%	406	25.6%	0	-	possibly_damaging(0.714)	-	-	NULL
TRIP6	7205	genome.wustl.edu	37	7	100468262	100468262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_003302.2	+1	reviewed	p.V299A	1.000	23	0%	78	19.2%	153	33.3%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SRRT	51593	genome.wustl.edu	37	7	100478977	100478977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015908.5	+1	validated	p.R65H	1.000	27	0%	105	19%	47	29.7%	unknown(0)	deleterious(0.01)	-	NULL
FLNC	2318	genome.wustl.edu	37	7	128495272	128495272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001458.4	+1	reviewed	p.I2385M	1.000	30	0%	96	20.8%	0	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ANGPT2	285	genome.wustl.edu	37	8	6366483	6366483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001147.2	-1	reviewed	p.I434L	1.000	111	0%	234	15.8%	6	0%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
SLC35G5	83650	genome.wustl.edu	37	8	11189361	11189361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_054028.1	+1	reviewed	p.D249A	0.969	94	0%	143	18.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF103481
PXDNL	137902	genome.wustl.edu	37	8	52412280	52412280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_144651.4	-1	validated	p.D144G	0.993	448	0%	1102	14.6%	2	50%	benign(0.036)	tolerated(0.23)	neutral(0.044)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LACTB2	51110	genome.wustl.edu	37	8	71573967	71573967	+	Splice_Site	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_016027.2	-1	validated	e2+2	1.000	337	0%	758	18.1%	0	-	-	-	-	-
ZFHX4	79776	genome.wustl.edu	37	8	77765710	77765710	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_024721.4	+1	validated	p.R2140*	1.000	356	0%	575	19.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
MMP16	4325	genome.wustl.edu	37	8	89128813	89128813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005941.4	-1	reviewed	p.P336A	1.000	220	0%	273	18.7%	0	-	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	superfamily_Hemopexin-like domain
BAI1	575	genome.wustl.edu	37	8	143623556	143623556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001702.2	+1	reviewed	p.G1321S	0.991	13	0%	22	27.3%	0	-	benign(0.008)	tolerated(0.52)	neutral(0.009)	NULL
OPLAH	26873	genome.wustl.edu	37	8	145106347	145106347	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000426825	-1	known	p.G1249	0.566	1	0.000	4	1.000	65	40%	unknown(0)	-	-	HMMPfam_Hydantoinase_B
IKBKAP	8518	genome.wustl.edu	37	9	111640295	111640295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_003640.3	-1	reviewed	p.Q1279*	0.808	152	0%	319	13.5%	23	4.3%	-	-	-	NULL
ITIH2	3698	genome.wustl.edu	37	10	7773961	7773961	+	Splice_Site	SNP	T	T	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_002216.2	+1	validated	e13+2	1.000	215	0%	359	43.2%	0	-	-	-	-	-
ITGA8	8516	genome.wustl.edu	37	10	15714703	15714703	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_003638.1	-1	provisional	p.S241*	1.000	309	0%	978	12%	2	0%	-	-	-	HMMSmart_Int_alpha,superfamily_SSF69318
ANKRD26	22852	genome.wustl.edu	37	10	27353001	27353001	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014915.2	-1	validated	p.E427Q	0.001	93	0%	375	12.8%	1	0%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
ZNF25	219749	genome.wustl.edu	37	10	38241315	38241315	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_145011.2	-1	provisional	p.E371Q	0.080	255	0%	750	12.4%	4	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DLG5	9231	genome.wustl.edu	37	10	79590072	79590072	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_004747.3	-1	reviewed	p.D638H	1.000	100	0%	262	19.1%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
EMX2	2018	genome.wustl.edu	37	10	119307682	119307682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_004098.3	+1	reviewed	p.R233Q	1.000	47	0%	86	29.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
OR4A5	81318	genome.wustl.edu	37	11	51411812	51411812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001005272.3	-1	validated	p.T195I	0.002	273	0%	629	24.6%	0	-	benign(0.155)	tolerated(0.13)	neutral(0.266)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RTN3	10313	genome.wustl.edu	37	11	63486359	63486359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_201428.1	+1	validated	p.K110Q	0.004	85	0%	195	22.6%	2	0%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
RBM4	5936	genome.wustl.edu	37	11	66411589	66411589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_002896.2	+1	validated	p.Y361H	1.000	65	0%	239	13.8%	160	11.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DPAGT1	1798	genome.wustl.edu	37	11	118969160	118969160	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001382.3	-1	reviewed	p.F227	1.000	104	0%	214	19.6%	6	50%	-	-	-	HMMPfam_Glycos_transf_4
C12orf40	283461	genome.wustl.edu	37	12	40044041	40044041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001031748.2	+1	validated	p.R191C	0.804	81	0%	144	19.4%	0	-	benign(0.002)	-	-	NULL
SPATS2	65244	genome.wustl.edu	37	12	49919872	49919872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_023071.3	+1	validated	p.A491V	0.000	108	0%	216	22.2%	21	23.8%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58016693	58016693	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_133489.2	+1	validated	p.Y305*	0.997	101	0%	233	16.7%	0	-	-	-	-	HMMPfam_Sulfate_transp
LRRIQ1	84125	genome.wustl.edu	37	12	85515547	85515547	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001079910.1	+1	validated	p.S1150R	0.000	102	0%	114	25.4%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100560206	100560206	+	RNA	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NR_024261.1	-1	validated	NULL	0.987	52	0%	103	15.5%	0	-	-	-	-	-
STAB2	55576	genome.wustl.edu	37	12	104046447	104046447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_017564.9	+1	reviewed	p.L457F	1.000	128	0%	198	26.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
SLC46A3	283537	genome.wustl.edu	37	13	29286895	29286895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001135919.1	-1	validated	p.A328T	0.996	106	0%	157	22.9%	2	0%	possibly_damaging(0.527)	tolerated(0.21)	neutral(0.222)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
RALGAPA1	253959	genome.wustl.edu	37	14	36041793	36041793	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_194301.2	-1	provisional	p.F1941	1.000	151	0%	220	15.9%	1	100%	-	-	-	HMMPfam_Rap_GAP,superfamily_SSF111347
FAN1	22909	genome.wustl.edu	37	15	31196980	31196980	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014967.4	+1	reviewed	p.P38	0.484	62	0%	96	20.8%	0	-	-	-	-	NULL
TYRO3	7301	genome.wustl.edu	37	15	41864678	41864678	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_006293.3	+1	reviewed	p.P597	0.992	86	0%	230	20.4%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PLA2G4D	283748	genome.wustl.edu	37	15	42361123	42361123	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_178034.3	-1	validated	p.P749	0.179	4	0.000	17	0.471	0	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
SEMA6D	80031	genome.wustl.edu	37	15	48055291	48055291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_153618.1	+1	reviewed	p.N246I	0.998	118	0%	158	24.1%	0	-	possibly_damaging(0.898)	tolerated(0.07)	deleterious(0.673)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
WDR72	256764	genome.wustl.edu	37	15	53957889	53957890	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_182758.2	-1	validated	p.V616fs	0.074:0.054	-	-	-	-	-	-	-	-	-	NULL
CHRNA5	1138	genome.wustl.edu	37	15	78882360	78882360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_000745.2	+1	provisional	p.K209N	1.000	567	0%	1008	26.4%	0	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ERCC4	2072	genome.wustl.edu	37	16	14041488	14041488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005236.2	+1	reviewed	p.G679C	0.000	254	0%	378	21.2%	0	-	benign(0.342)	deleterious(0.05)	neutral(0.453)	NULL
GPRC5B	51704	genome.wustl.edu	37	16	19883868	19883868	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_016235.1	-1	reviewed	p.L100	0.630	31	0%	52	21.2%	14	14.2%	-	-	-	HMMPfam_7tm_3
DNAH3	55567	genome.wustl.edu	37	16	21061233	21061233	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_017539.1	-1	provisional	p.Q1449E	1.000	198	0%	335	17.9%	0	-	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNX29P2	440352	genome.wustl.edu	37	16	21393500	21393500	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000324089	+1	known	p.N31	0.997	282	0%	505	11.5%	0	-	-	-	-	NULL
NUP93	9688	genome.wustl.edu	37	16	56855441	56855441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014669.3	+1	validated	p.V197E	0.997	113	0%	397	10.3%	23	13%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_000546.4	-1	reviewed	p.R248Q	1.000	65	0%	172	45.9%	47	65.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
EFCAB5	374786	genome.wustl.edu	37	17	28380832	28380832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_198529.3	+1	validated	p.K620N	0.001	805	0.1%	1235	17.7%	1	0%	possibly_damaging(0.727)	tolerated(0.33)	neutral(0.289)	superfamily_EF-hand
ENSG00000247185	0	genome.wustl.edu	37	17	29096960	29096960	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000499895	+1	known	NULL	1.000	59	0%	90	34.4%	6	16.6%	-	-	-	-
FBXO47	494188	genome.wustl.edu	37	17	37093539	37093539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001008777.2	-1	validated	p.D416E	0.010	88	0%	118	24.6%	0	-	benign(0.002)	tolerated(0.66)	neutral(0.003)	NULL
FKBP10	60681	genome.wustl.edu	37	17	39975643	39975643	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000455106	+1	known	p.S46L	0.996	15	0%	52	23.1%	238	36.9%	-	-	-	HMMPfam_FKBP_C,superfamily_FKBP-like
TMC6	11322	genome.wustl.edu	37	17	76120211	76120211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001127198.1	-1	reviewed	p.T314M	1.000	4	0.000	11	0.545	27	59.2%	unknown(0)	deleterious(0.01)	-	NULL
LPIN2	9663	genome.wustl.edu	37	18	2940682	2940682	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014646.2	-1	reviewed	p.E207fs	1.000	-	-	-	-	-	-	-	-	-	NULL
LAMA1	284217	genome.wustl.edu	37	18	6976068	6976068	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_005559.2	-1	validated	p.A2119	0.517	110	0%	248	17.3%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_II
CTAGE1	64693	genome.wustl.edu	37	18	19996478	19996478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_172241.2	-1	validated	p.W433R	0.780	448	0%	1318	10.7%	0	-	benign(0.175)	deleterious(0.02)	neutral(0.399)	NULL
PLIN4	729359	genome.wustl.edu	37	19	4512369	4512369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001080400.1	-1	provisional	p.V521I	0.021	22	0%	68	27.9%	0	-	possibly_damaging(0.797)	tolerated(0.38)	neutral(0.317)	NULL
DNM2	1785	genome.wustl.edu	37	19	10908165	10908165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001005361.1	+1	reviewed	p.A436S	1.000	48	0%	138	21%	12	8.3%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_Dynamin_M
ZNF799	90576	genome.wustl.edu	37	19	12502970	12502970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001080821.1	-1	validated	p.G81V	0.001	278	0%	493	18.3%	3	66.6%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	NULL
TIMM50	92609	genome.wustl.edu	37	19	39971387	39971387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001001563.1	+1	validated	p.R68P	0.814	25	0%	51	13.7%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
DEDD2	162989	genome.wustl.edu	37	19	42713872	42713872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_133328.2	-1	provisional	p.S190C	0.311	42	0%	116	15.5%	24	12.5%	probably_damaging(0.954)	tolerated(0.06)	deleterious(0.720)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47423149	47423149	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_004491.4	+1	reviewed	p.L406*	0.454	192	0%	426	41.5%	5	80%	-	-	-	HMMSmart_SM00441
PPP2R1A	5518	genome.wustl.edu	37	19	52705196	52705196	+	Splice_Site	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_014225.5	+1	reviewed	e2-1	1.000	55	0%	141	19.1%	0	-	-	-	-	-
NLRP5	126206	genome.wustl.edu	37	19	56544997	56544997	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_153447.4	+1	reviewed	p.G846A	0.000	169	0%	434	17.1%	0	-	benign(0.422)	tolerated(0.07)	neutral(0.456)	superfamily_SSF52047
TGM6	343641	genome.wustl.edu	37	20	2376000	2376000	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_198994.2	+1	validated	p.L114	0.996	63	0%	196	12.2%	0	-	-	-	-	HMMPfam_Transglut_N,superfamily_E set domains
PLCB1	23236	genome.wustl.edu	37	20	8630054	8630054	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015192.2	+1	reviewed	p.R184	0.993	88	0%	211	15.6%	1	100%	-	-	-	superfamily_EF-hand
NANP	140838	genome.wustl.edu	37	20	25596672	25596672	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_152667.2	-1	validated	p.N212	0.008	159	0%	327	18.3%	3	66.6%	-	-	-	superfamily_HAD-like
RALGAPB	57148	genome.wustl.edu	37	20	37137784	37137784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_020336.2	+1	validated	p.L269V	1.000	236	0%	276	25.7%	5	20%	benign(0.243)	tolerated(0.12)	neutral(0.285)	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51872367	51872367	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_173485.4	+1	validated	p.H790	0.917	219	0.5%	465	15.3%	1	0%	-	-	-	NULL
C20orf43	51507	genome.wustl.edu	37	20	55092205	55092205	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_016407.3	+1	validated	p.E230D	0.006	81	0%	194	30.9%	53	39.6%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_DUF602
DSCAM	1826	genome.wustl.edu	37	21	41450620	41450620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001389.3	-1	validated	p.D1569N	1.000	145	0%	244	23.4%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
GGTLC2	91227	genome.wustl.edu	37	22	22989735	22989735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_199127.2	+1	validated	p.T162M	0.984	19	0%	85	36.5%	16	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_G_glu_transpept
ISX	91464	genome.wustl.edu	37	22	35463113	35463113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001008494.1	+1	validated	p.R11S	0.006	24	0%	64	17.2%	0	-	benign(0.327)	deleterious(0)	deleterious(0.547)	NULL
ZC3H7B	23264	genome.wustl.edu	37	22	41734151	41734151	+	Silent	SNP	C	C	T	rs146031977	by1000genomes	TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000396532	+1	known	p.G82	0.001	5	0.000	16	0.312	0	-	-	-	-	NULL
ENSG00000210077	0	genome.wustl.edu	37	MT	1642	1642	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000387342	+1	novel	NULL	NULL	268	0%	232	78.9%	1709	97.9%	-	-	-	-
SHROOM2	357	genome.wustl.edu	37	X	9900789	9900789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001649.2	+1	reviewed	p.Q1156K	0.000	16	0%	32	25%	4	0%	benign(0.423)	tolerated(0.22)	neutral(0.180)	NULL
SMS	6611	genome.wustl.edu	37	X	22025268	22025268	+	Missense_Mutation	SNP	C	C	A	rs140761412	by1000genomes	TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000415881	+1	known	p.L260I	0.001	1	0.000	5	1.000	0	-	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
LOC389842	389842	genome.wustl.edu	37	X	25664094	25664094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	XM_372200.7	-1	model	p.D117E	1.000	136	0%	139	28.1%	85	0%	-	-	-	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like
MAGEB1	4112	genome.wustl.edu	37	X	30269195	30269195	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_002363.4	+1	reviewed	p.F195	0.000	108	0%	164	21.3%	0	-	-	-	-	HMMPfam_MAGE
PHF16	9767	genome.wustl.edu	37	X	46845188	46845188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001077445.1	+1	reviewed	p.A41S	1.000	142	0%	215	21.9%	2	0%	benign(0.002)	tolerated(0.56)	neutral(0.006)	HMMPfam_EPL1
PHF8	23133	genome.wustl.edu	37	X	54022170	54022170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_015107.2	-1	reviewed	p.V427I	0.239	68	0%	94	23.4%	17	0%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71425356	71425356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_017669.2	-1	validated	p.M1087I	0.001	396	0%	635	17.6%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105449987	105449987	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	ENST00000337685	+1	known	p.Q188*	0.000	147	0%	222	23.4%	0	-	-	-	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107434698	107434698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001847.2	-1	reviewed	p.R417C	0.846	164	0%	354	33.1%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
SASH3	54440	genome.wustl.edu	37	X	128922505	128922505	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_018990.3	+1	reviewed	p.M84I	1.000	51	0%	111	21.6%	24	0%	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
ELF4	2000	genome.wustl.edu	37	X	129203441	129203441	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001127197.1	-1	reviewed	p.Q341*	0.022	123	0%	240	17.1%	6	0%	-	-	-	superfamily_SSF46785
ARHGAP4	393	genome.wustl.edu	37	X	153178235	153178235	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_001666.4	-1	reviewed	p.K487N	0.001	15	0%	26	34.6%	12	0%	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
RENBP	5973	genome.wustl.edu	37	X	153206946	153206946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G5-01A-11W-A062-09	TCGA-A5-A0G5-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fdfeb2c3-ed57-4eab-bcaf-e56c0e090fbb	a8b6afc5-a37c-418b-89c2-dd13bb82f708	NM_002910.5	-1	reviewed	p.N310K	0.013	8	0.000	30	0.567	47	87.2%	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim
