Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CCDC27	148870	genome.wustl.edu	37	1	3679934	3679934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_152492.2	+1	validated	p.S406L	0.000	30	0%	41	46.3%	0	-	possibly_damaging(0.602)	deleterious(0.01)	deleterious(0.614)	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
ARID1A	8289	genome.wustl.edu	37	1	27106896	27106897	+	In_Frame_Ins	INS	-	-	CTG	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006015.4	+1	reviewed	p.2171in_frame_insL	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PHC2	1912	genome.wustl.edu	37	1	33795739	33795739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_198040.2	-1	reviewed	p.A693V	0.334	24	0%	27	55.6%	133	45.8%	benign(0.311)	tolerated(0.31)	neutral(0.124)	NULL
PGM1	5236	genome.wustl.edu	37	1	64089430	64089430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000371083	+1	known	p.G100V	1.000	99	0%	80	38.8%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PGM_PMM_I,superfamily_A-D-PHexomutase_a/b/a-I/II/III
GLMN	11146	genome.wustl.edu	37	1	92712653	92712653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_053274.2	-1	reviewed	p.E545G	1.000	240	0%	310	18.7%	4	100%	possibly_damaging(0.445)	tolerated(0.08)	neutral(0.446)	HMMPfam_FKBP12
PALMD	54873	genome.wustl.edu	37	1	100154788	100154788	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_017734.4	+1	validated	p.P324	0.009	226	0%	233	42.1%	100	40%	-	-	-	NULL
LOC100129138	100129138	genome.wustl.edu	37	1	104616052	104616052	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XR_036957.2	+1	model	NULL	0.078	39	0%	24	66.7%	0	-	-	-	-	-
WDR77	79084	genome.wustl.edu	37	1	111990091	111990091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_024102.2	-1	provisional	p.G137S	0.989	106	0%	69	49.3%	81	25.9%	benign(0.005)	tolerated(0.29)	neutral(0.029)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CD160	11126	genome.wustl.edu	37	1	145704052	145704052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_007053.2	-1	validated	p.R122H	0.001	782	0.1%	952	29.3%	0	-	benign(0.008)	tolerated(0.22)	neutral(0.042)	NULL
BCAN	63827	genome.wustl.edu	37	1	156626136	156626136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_021948.3	+1	validated	p.R669C	1.000	102	0%	131	28.2%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
SH2D2A	9047	genome.wustl.edu	37	1	156785879	156785879	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003975.3	-1	reviewed	p.H14	0.000	48	0%	45	24.4%	1	0%	-	-	-	NULL
ATP1A2	477	genome.wustl.edu	37	1	160097393	160097393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000702.3	+1	reviewed	p.R267H	1.000	147	0%	172	30.2%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
LMX1A	4009	genome.wustl.edu	37	1	165218837	165218837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_177398.3	-1	validated	p.A102T	1.000	87	0%	98	24.5%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MIR199A2	406977	genome.wustl.edu	37	1	172113757	172113757	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000385289	-1	known	NULL	1.000	139	0%	219	62.6%	0	-	-	-	-	-
CENPL	91687	genome.wustl.edu	37	1	173772216	173772216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001127181.2	-1	validated	p.F329S	1.000	132	0%	190	17.4%	6	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PRELP	5549	genome.wustl.edu	37	1	203452495	203452495	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002725.3	+1	reviewed	p.P61	0.965	306	0%	319	32.3%	0	-	-	-	-	superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204948557	204948557	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000367173	+1	known	p.P652L	0.976	54	0%	97	30.9%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216017814	216017814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_206933.2	-1	reviewed	p.E3027A	1.000	233	0%	367	31.1%	0	-	probably_damaging(0.991)	tolerated(0.67)	neutral(0.447)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SUSD4	55061	genome.wustl.edu	37	1	223396819	223396819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_017982.3	-1	validated	p.V406M	0.594	65	0%	31	29%	2	0%	benign(0.029)	tolerated(0.18)	neutral(0.058)	NULL
ZNF496	84838	genome.wustl.edu	37	1	247464264	247464264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_032752.1	-1	provisional	p.G441R	1.000	37	0%	58	27.6%	51	23.5%	possibly_damaging(0.719)	deleterious(0.04)	deleterious(0.609)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DNMT3A	1788	genome.wustl.edu	37	2	25457158	25457158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_022552.3	-1	reviewed	p.A910V	1.000	73	0%	83	49.4%	70	47.1%	possibly_damaging(0.725)	deleterious(0)	deleterious(0.708)	NULL
CAD	790	genome.wustl.edu	37	2	27460967	27460967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000458503	+1	known	p.Q243*	1.000	36	0%	41	34.1%	29	62%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	superfamily_Metallo-dependent hydrolases
MFSD9	84804	genome.wustl.edu	37	2	103348781	103348783	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	CTA	CTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_032718.3	-1	validated	p.V84in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
C2orf49	79074	genome.wustl.edu	37	2	105953938	105953939	+	Frame_Shift_Ins	INS	-	-	C	rs3217439	byCluster;by1000genomes	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000437250	+1	known	p.L4fs	0.881:0.072	-	-	-	-	-	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152359956	152359956	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_004543.4	-1	reviewed	e137-1	1.000	102	0%	77	49.4%	0	-	-	-	-	-
GAD1	2571	genome.wustl.edu	37	2	171716238	171716238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000817.2	+1	reviewed	p.A544G	1.000	67	0%	60	56.7%	4	75%	probably_damaging(0.994)	tolerated(0.25)	deleterious(0.489)	superfamily_PLP-dependent transferases
TTN	7273	genome.wustl.edu	37	2	179453672	179453672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000356127	-1	known	p.R18357H	1.000	67	0%	96	38.5%	0	-	possibly_damaging(0.737)	-	-	HMMPfam_fn3,HMMSmart_SM00060
DNAH7	56171	genome.wustl.edu	37	2	196825024	196825024	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018897.2	-1	validated	p.R951*	1.000	229	0%	308	11.7%	0	-	-	-	-	HMMPfam_DHC_N2
HECW2	57520	genome.wustl.edu	37	2	197184005	197184005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020760.1	-1	provisional	p.A537T	0.036	79	0%	64	50%	2	50%	benign(0.002)	tolerated(1)	-	NULL
NOP58	51602	genome.wustl.edu	37	2	203165016	203165016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015934.3	+1	provisional	p.R443H	1.000	424	0%	320	45.3%	24	50%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
NRP2	8828	genome.wustl.edu	37	2	206608018	206608018	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_201266.1	+1	reviewed	p.S461	1.000	195	0%	125	12.8%	8	37.5%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
IGFBP2	3485	genome.wustl.edu	37	2	217526640	217526640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000436812	+1	known	p.R67Q	0.001	40	0%	41	51.2%	1600	49%	unknown(0)	-	-	NULL
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_022648.4	-1	reviewed	p.Q659in_frame_del	1.000:1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
ABCB6	10058	genome.wustl.edu	37	2	220077769	220077769	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000295750	-1	known	p.T456M	0.708	16	0%	19	26.3%	32	3.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
NCL	4691	genome.wustl.edu	37	2	232325441	232325441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005381.2	-1	reviewed	p.D250E	0.016	301	0.3%	292	43.2%	1349	41.4%	unknown(0)	tolerated(1)	-	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17425426	17425426	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001134381.1	-1	validated	p.N197	0.999	96	0%	99	46.5%	2	0%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
NKTR	4820	genome.wustl.edu	37	3	42679208	42679208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005385.3	+1	reviewed	p.S671L	0.963	291	0%	267	47.2%	1	0%	unknown(0)	deleterious(0)	-	NULL
MAP4	4134	genome.wustl.edu	37	3	47951282	47951282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_030884.3	-1	reviewed	p.I150M	0.000	245	0%	272	50.7%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
PTPRG	5793	genome.wustl.edu	37	3	62278200	62278200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002841.3	+1	reviewed	p.N1387S	1.000	334	0%	275	46.5%	9	55.5%	possibly_damaging(0.837)	tolerated(0.12)	deleterious(0.580)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS	8618	genome.wustl.edu	37	3	62464048	62464048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003716.3	-1	reviewed	p.A1073T	1.000	109	0%	88	45.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GSK3B	2932	genome.wustl.edu	37	3	119562149	119562149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002093.3	-1	reviewed	p.R396Q	1.000	119	0%	123	13.8%	48	0%	benign(0.012)	tolerated(0.1)	neutral(0.287)	NULL
MYLK	4638	genome.wustl.edu	37	3	123383094	123383094	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_053025.3	-1	reviewed	p.S1281	0.773	238	0%	189	56.1%	9	44.4%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AMOTL2	51421	genome.wustl.edu	37	3	134080403	134080403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_016201.2	-1	reviewed	p.R509H	1.000	11	0%	15	53.3%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0226	9711	genome.wustl.edu	37	3	197444856	197444856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001145642.2	-1	validated	p.R11C	1.000	235	0%	184	48.9%	4	75%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
GRK4	2868	genome.wustl.edu	37	4	3021472	3021472	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_182982.2	+1	reviewed	p.P282	0.885	171	0%	102	50%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EVC2	132884	genome.wustl.edu	37	4	5630291	5630291	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_147127.4	-1	reviewed	p.H627	0.007	85	0%	66	43.9%	1	0%	-	-	-	NULL
CHIC2	26511	genome.wustl.edu	37	4	54880236	54880237	+	Frame_Shift_Ins	INS	-	-	TATA	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_012110.2	-1	reviewed	p.H128fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Erf4
DMP1	1758	genome.wustl.edu	37	4	88584074	88584074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_004407.3	+1	reviewed	p.D382N	0.203	767	0%	314	47.1%	1	0%	benign(0.101)	tolerated(0.29)	neutral(0.037)	HMMPfam_DMP1
HERC3	8916	genome.wustl.edu	37	4	89527178	89527178	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_014606.1	+1	provisional	p.H68	0.560	100	0%	66	45.5%	1	100%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
FBXW7	55294	genome.wustl.edu	37	4	153273708	153273708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018315.4	-1	validated	p.R59W	1.000	121	0%	148	12.8%	0	-	unknown(0)	deleterious(0)	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187509893	187509893	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000512772	-1	known	p.R320C	0.570	124	0%	112	47.3%	170	38.2%	-	-	-	NULL
RICTOR	253260	genome.wustl.edu	37	5	38996929	38996929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_152756.3	-1	validated	p.V150L	1.000	335	0%	388	51.8%	0	-	benign(0.159)	tolerated(0.14)	neutral(0.264)	superfamily_ARM repeat
PIK3R1	5295	genome.wustl.edu	37	5	67591132	67591134	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	GAC	GAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_181523.1	+1	reviewed	p.T576in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127654571	127654571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001999.3	-1	reviewed	p.D1532Y	1.000	158	0%	159	44.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CDKL3	51265	genome.wustl.edu	37	5	133642368	133642368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001113575.1	-1	reviewed	p.R464C	0.952	44	0%	53	45.3%	0	-	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
BRD8	10902	genome.wustl.edu	37	5	137496603	137496603	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_139199.1	-1	reviewed	p.R802*	0.970	445	0%	363	46.8%	41	24.3%	-	-	-	HMMSmart_SM00297,superfamily_Bromodomain
PCDHB4	56131	genome.wustl.edu	37	5	140502135	140502135	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018938.2	+1	reviewed	p.S185	0.002	91	0%	106	50.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TSPAN17	26262	genome.wustl.edu	37	5	176083740	176083740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_012171.1	+1	validated	p.V227M	1.000	35	0%	32	34.4%	31	45.1%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
GRM6	2916	genome.wustl.edu	37	5	178408805	178408805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000843.3	-1	reviewed	p.S829	1.000	29	0%	24	54.2%	0	-	-	-	-	HMMPfam_7tm_3
ENSG00000250311	0	genome.wustl.edu	37	6	26478487	26478489	+	RNA	DEL	CTT	CTT	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000511597	-1	known	NULL	0.989:1.000:1.000	-	-	-	-	-	-	-	-	-	-
HIST1H4L	8368	genome.wustl.edu	37	6	27841231	27841231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003546.2	-1	reviewed	p.R20C	1.000	47	0%	42	14.3%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00417,superfamily_Histone-fold
CUL9	23113	genome.wustl.edu	37	6	43188269	43188269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015089.2	+1	validated	p.D2119N	1.000	129	0.8%	162	43.8%	41	41.4%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_RING/U-box
BAI3	577	genome.wustl.edu	37	6	70049294	70049294	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001704.2	+1	reviewed	p.A1119	0.998	278	0%	239	42.7%	3	0%	-	-	-	HMMPfam_7tm_2
IRAK1BP1	134728	genome.wustl.edu	37	6	79577442	79577442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001010844.1	+1	provisional	p.T50I	0.858	39	0%	33	33.3%	4	25%	benign(0.244)	tolerated(0.17)	neutral(0.083)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129649469	129649469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000426.3	+1	reviewed	p.R1408H	0.013	220	0%	230	45.2%	1	0%	benign(0.005)	tolerated(0.09)	neutral(0.296)	HMMPfam_Laminin_EGF,superfamily_ConA_like_lec_gl
HIVEP2	3097	genome.wustl.edu	37	6	143092591	143092591	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006734.3	-1	provisional	p.G1095	0.224	39	0%	43	46.5%	7	42.8%	-	-	-	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151331015	151331015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015440.3	+1	validated	p.R729Q	1.000	179	0%	139	49.6%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
PARK2	5071	genome.wustl.edu	37	6	162206907	162206907	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_004562.2	-1	reviewed	p.R256	1.000	41	0%	54	57.4%	2	100%	-	-	-	NULL
ABCB5	340273	genome.wustl.edu	37	7	20738159	20738159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_178559.5	+1	validated	p.A269T	0.987	56	0%	49	51%	0	-	benign(0.008)	deleterious(0.05)	neutral(0.345)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
TBX20	57057	genome.wustl.edu	37	7	35288338	35288338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001077653.2	-1	reviewed	p.R166W	1.000	19	0%	19	52.6%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
LOC100132308	100132308	genome.wustl.edu	37	7	63020463	63020463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XM_001715240.2	+1	model	p.V205I	1.000	14	0%	24	29.2%	2	0%	-	-	-	HMMPfam_Nucleoside_tran
GTF2IRD2	84163	genome.wustl.edu	37	7	74211395	74211395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_173537.2	-1	validated	p.G819D	0.925	347	0%	286	32.5%	9	11.1%	probably_damaging(0.983)	tolerated(0.28)	neutral(0.461)	NULL
RHBDD2	57414	genome.wustl.edu	37	7	75517573	75517573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001040456.1	+1	validated	p.T334M	0.102	44	0%	63	11.1%	146	16.4%	possibly_damaging(0.456)	deleterious(0.01)	deleterious(0.555)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98551030	98551030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003496.2	+1	validated	p.A1877T	1.000	147	0%	80	52.5%	19	73.6%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_ARM repeat
ZNF394	84124	genome.wustl.edu	37	7	99097348	99097348	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_032164.2	-1	provisional	p.W123*	0.992	145	0%	141	41.8%	9	33.3%	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
EPO	2056	genome.wustl.edu	37	7	100319326	100319326	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000799.2	+1	reviewed	p.T53	1.000	31	0%	31	54.8%	0	-	-	-	-	HMMPfam_EPO_TPO,superfamily_4_helix_cytokine,PatternScan_EPO_TPO
MUC3A	4584	genome.wustl.edu	37	7	100552197	100552197	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XM_001725354.2	+1	model	p.L926	0.003	445	0.2%	386	23.3%	0	-	-	-	-	NULL
OPN1SW	611	genome.wustl.edu	37	7	128415072	128415072	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001708.2	-1	reviewed	p.G163	0.005	68	0%	60	38.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TNPO3	23534	genome.wustl.edu	37	7	128630110	128630110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_012470.2	-1	validated	p.R468H	0.950	132	0%	126	37.3%	23	69.5%	benign(0.002)	tolerated(0.42)	neutral(0.014)	superfamily_ARM repeat
CSPP1	79848	genome.wustl.edu	37	8	68107733	68107733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001077204.1	+1	validated	p.R1226C	0.013	249	0%	349	14.6%	10	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
TMEM65	157378	genome.wustl.edu	37	8	125335564	125335564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_194291.2	-1	validated	p.A157V	1.000	71	0%	57	12.3%	5	0%	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_DUF2453
TMEM71	137835	genome.wustl.edu	37	8	133764099	133764099	+	Silent	SNP	G	G	A	rs183699304	by1000genomes	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_144649.2	-1	validated	p.C82	0.814	442	0%	307	50.8%	1	0%	-	-	-	NULL
JAK2	3717	genome.wustl.edu	37	9	5126705	5126705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_004972.3	+1	reviewed	p.C1105G	1.000	92	0%	92	41.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PTPRD	5789	genome.wustl.edu	37	9	8528597	8528597	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002839.3	-1	reviewed	p.R179*	1.000	475	0%	528	47%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
BNC2	54796	genome.wustl.edu	37	9	16552698	16552698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_017637.5	-1	validated	p.V167I	1.000	112	0%	103	47.6%	0	-	possibly_damaging(0.533)	deleterious(0.02)	deleterious(0.563)	NULL
TRBV20OR9-2	6962	genome.wustl.edu	37	9	33618444	33618444	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000379435	+1	known	p.S110	0.000	97	0%	108	13.9%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
UNC13B	10497	genome.wustl.edu	37	9	35381682	35381682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006377.3	+1	reviewed	p.R792C	1.000	181	0%	218	45.9%	26	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC642406	642406	genome.wustl.edu	37	9	40610116	40610116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XM_002344253.1	-1	model	p.P40H	0.989	56	0%	87	8%	1	0%	-	-	-	HMMSmart_SM00231,superfamily_Galactose-binding domain-like
PCSK5	5125	genome.wustl.edu	37	9	78789992	78789992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006200.3	+1	reviewed	p.R616H	1.000	193	0%	228	49.6%	4	0%	possibly_damaging(0.92)	tolerated(0.12)	deleterious(0.631)	NULL
SHC3	53358	genome.wustl.edu	37	9	91657028	91657028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_016848.4	-1	validated	p.V425I	0.995	147	0%	113	15.9%	1	0%	possibly_damaging(0.91)	tolerated(0.26)	neutral(0.396)	NULL
MUSK	4593	genome.wustl.edu	37	9	113530241	113530241	+	Silent	SNP	G	G	A	rs139945437	by1000genomes	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005592.3	+1	reviewed	p.T354	0.013	276	0%	239	42.7%	0	-	-	-	-	HMMPfam_Fz
OLFML2A	169611	genome.wustl.edu	37	9	127572305	127572305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_182487.2	+1	validated	p.V525M	1.000	16	0%	24	54.2%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_OLF,HMMSmart_SM00284
GARNL3	84253	genome.wustl.edu	37	9	130145790	130145790	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_032293.4	+1	validated	p.F745	1.000	149	0%	130	46.9%	0	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
AKR1C1	1645	genome.wustl.edu	37	10	5011055	5011055	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000442997	+1	known	p.S130L	0.943	238	0%	177	42.9%	4	0%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_2
CUL2	8453	genome.wustl.edu	37	10	35305157	35305157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003591.2	-1	provisional	p.L617S	1.000	64	0%	48	12.5%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Cullin,superfamily_Cullin homology domain
OGDHL	55753	genome.wustl.edu	37	10	50966551	50966551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018245.2	-1	validated	p.R30C	0.005	14	0%	20	40%	9	77.7%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63850844	63850845	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_032199.2	+1	validated	p.L542fs	0.005:0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF365	22891	genome.wustl.edu	37	10	64148296	64148296	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_199451.2	+1	reviewed	p.Q295H	1.000	60	0%	43	46.5%	0	-	possibly_damaging(0.476)	deleterious(0.02)	deleterious(0.540)	NULL
MAT1A	4143	genome.wustl.edu	37	10	82043703	82043703	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000429.2	-1	reviewed	p.I87	1.000	44	0%	43	41.9%	10	0%	-	-	-	HMMPfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synt
AGAP11	119385	genome.wustl.edu	37	10	88768445	88768445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_133447.1	+1	validated	p.L146M	0.695	510	0%	394	46.4%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000371953	+1	known	p.R233*	0.984	271	0.4%	322	45.7%	92	6.5%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89725043	89725043	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000371953	+1	known	e9-1	1.000	82	0%	75	45.3%	0	-	-	-	-	-
DPCD	25911	genome.wustl.edu	37	10	103361062	103361062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015448.1	+1	provisional	p.R125C	1.000	60	0%	62	50%	125	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LGR4	55366	genome.wustl.edu	37	11	27414057	27414057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018490.2	-1	validated	p.A89V	1.000	57	0%	65	47.7%	8	37.5%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_LRR_1,superfamily_SSF52058
AHNAK	79026	genome.wustl.edu	37	11	62291324	62291324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001620.1	-1	validated	p.P3522L	1.000	161	0.6%	246	41.9%	12	50%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
SIPA1	6494	genome.wustl.edu	37	11	65417455	65417455	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006747.3	+1	reviewed	p.D927	0.976	11	0%	27	63%	158	35.4%	-	-	-	NULL
PACS1	55690	genome.wustl.edu	37	11	65984193	65984193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018026.2	+1	reviewed	p.R309W	0.685	59	0%	38	47.4%	15	53.3%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
STARD10	10809	genome.wustl.edu	37	11	72466754	72466754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006645.2	-1	validated	p.A208T	1.000	23	0%	15	40%	156	48.7%	benign(0.108)	deleterious(0.01)	neutral(0.414)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
C2CD3	26005	genome.wustl.edu	37	11	73814558	73814558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015531.4	-1	validated	p.L733P	0.000	310	0%	334	44.3%	1	100%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
ALG8	79053	genome.wustl.edu	37	11	77835216	77835216	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_024079.4	-1	reviewed	p.W73*	1.000	212	0%	207	38.2%	15	26.6%	-	-	-	HMMPfam_Alg6_Alg8
APOC3	345	genome.wustl.edu	37	11	116701581	116701581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000040.1	+1	reviewed	p.V50M	0.015	10	0.000	9	0.556	0	-	possibly_damaging(0.481)	tolerated(0.15)	neutral(0.400)	HMMPfam_Apo-CIII
OR4D5	219875	genome.wustl.edu	37	11	123811102	123811102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001001965.1	+1	provisional	p.R260K	0.945	290	0%	306	48%	0	-	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
USP5	8078	genome.wustl.edu	37	12	6969622	6969622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001098536.1	+1	validated	p.Q437H	1.000	105	1%	72	47.2%	23	69.5%	benign(0.005)	tolerated(0.62)	neutral(0.004)	HMMPfam_UCH,superfamily_Cysteine proteinases
WBP11	51729	genome.wustl.edu	37	12	14949866	14949866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_016312.2	-1	reviewed	p.T88fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Wbp11
ERP27	121506	genome.wustl.edu	37	12	15068492	15068492	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_152321.2	-1	validated	p.L235	0.002	218	0%	141	43.3%	0	-	-	-	-	superfamily_Thiordxn-like_fd
LRRK2	120892	genome.wustl.edu	37	12	40704417	40704417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_198578.3	+1	reviewed	p.R1501Q	1.000	330	0%	318	50.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF52540
ASIC1	41	genome.wustl.edu	37	12	50471078	50471078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020039.2	+1	reviewed	p.T214M	0.998	75	0%	50	40%	15	26.6%	benign(0.089)	tolerated(0.62)	neutral(0.010)	HMMPfam_ASC
KRT80	144501	genome.wustl.edu	37	12	52565197	52565197	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_182507.2	-1	reviewed	p.S448	0.008	128	0%	100	36%	1	100%	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57584635	57584635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002332.2	+1	reviewed	p.R2360Q	1.000	57	0%	49	10.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57601869	57601869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002332.2	+1	reviewed	p.G3970R	1.000	10	0%	18	33.3%	83	38.5%	probably_damaging(0.974)	tolerated(0.37)	neutral(0.435)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NAV3	89795	genome.wustl.edu	37	12	78362373	78362373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_014903.4	+1	validated	p.H188N	1.000	104	0%	80	45%	0	-	possibly_damaging(0.812)	tolerated(0.08)	deleterious(0.605)	superfamily_Calponin-homology domain CH-domain
PLXNC1	10154	genome.wustl.edu	37	12	94692519	94692519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005761.1	+1	provisional	p.E1396K	1.000	125	0%	86	43%	0	-	possibly_damaging(0.923)	tolerated(0.43)	neutral(0.386)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
VSIG10	54621	genome.wustl.edu	37	12	118517241	118517241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_019086.5	-1	validated	p.E279K	0.368	102	0%	107	43%	20	25%	benign(0)	tolerated(0.8)	neutral(0.001)	superfamily_Immunoglobulin
CIT	11113	genome.wustl.edu	37	12	120263005	120263005	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_007174.1	-1	validated	p.T307	0.795	117	0%	130	17.7%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100288312	100288312	genome.wustl.edu	37	12	125396905	125396905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XM_002343222.1	+1	model	p.E263K	0.277	214	0%	297	23.6%	6298	21.8%	-	-	-	NULL
POSTN	10631	genome.wustl.edu	37	13	38160990	38160990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006475.2	-1	validated	p.R228C	1.000	76	0%	68	42.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
RB1	5925	genome.wustl.edu	37	13	48941648	48941648	+	Nonsense_Mutation	SNP	C	C	T	rs121913300		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000321.2	+1	reviewed	p.R320*	1.000	239	0%	186	38.7%	1	0%	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	49039506	49039506	+	Splice_Site	SNP	T	T	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000321.2	+1	reviewed	e23+2	1.000	191	0%	154	42.2%	3	100%	-	-	-	-
TDRD3	81550	genome.wustl.edu	37	13	61102778	61102778	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_030794.2	+1	validated	p.P380	0.016	157	0.6%	163	24.5%	5	40%	-	-	-	NULL
RBM26	64062	genome.wustl.edu	37	13	79945232	79945232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_022118.3	-1	validated	p.R161Q	1.000	131	0%	218	46.8%	4	50%	unknown(0)	tolerated(0.19)	-	NULL
TPP2	7174	genome.wustl.edu	37	13	103299696	103299696	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003291.2	+1	reviewed	e21+2	1.000	170	0%	115	10.4%	0	-	-	-	-	-
CHD8	57680	genome.wustl.edu	37	14	21863147	21863147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020920.3	-1	reviewed	p.R1493C	1.000	98	0%	156	46.2%	24	45.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PRPF39	55015	genome.wustl.edu	37	14	45566145	45566145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_017922.3	+1	validated	p.Y169C	1.000	23	0%	20	45%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00386,superfamily_TPR-like
MUDENG	55745	genome.wustl.edu	37	14	57755522	57755522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018229.3	+1	validated	p.R465W	1.000	149	0%	135	34.8%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
TTC7B	145567	genome.wustl.edu	37	14	91113310	91113310	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001010854.1	-1	provisional	p.L525	0.018	165	0%	159	44%	20	35%	unknown(0)	-	-	HMMSmart_SM00028,superfamily_TPR-like
UNC79	57578	genome.wustl.edu	37	14	94087998	94087998	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020818.3	+1	validated	p.T1296	1.000	320	0%	287	41.5%	0	-	-	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43093314	43093314	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000263802	-1	known	p.P623	0.885	113	0%	105	11.4%	0	-	-	-	-	NULL
EIF3J	8669	genome.wustl.edu	37	15	44853344	44853348	+	Frame_Shift_Del	DEL	GTGAC	GTGAC	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	GTGAC	GTGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003758.2	+1	validated	p.M258fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_eIF3_subunit
VPS13C	54832	genome.wustl.edu	37	15	62305295	62305295	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020821.1	-1	validated	p.S256	0.998	91	0%	84	11.9%	0	-	-	-	-	NULL
ISLR2	57611	genome.wustl.edu	37	15	74425259	74425259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001130136.1	+1	validated	p.T55M	1.000	59	0%	45	51.1%	65	49.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_LRRNT,superfamily_SSF52058
SCNN1G	6340	genome.wustl.edu	37	16	23226597	23226597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001039.3	+1	reviewed	p.R586H	0.000	118	0%	128	13.3%	15	13.3%	benign(0.396)	tolerated(0.13)	neutral(0.380)	NULL
HS3ST4	9951	genome.wustl.edu	37	16	26147293	26147293	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000331351	+1	known	p.A365	0.001	320	0%	294	40.5%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
VPS35	55737	genome.wustl.edu	37	16	46696186	46696186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018206.4	-1	reviewed	p.S679F	1.000	94	0%	93	53.8%	109	54.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Vps35
NOD2	64127	genome.wustl.edu	37	16	50733825	50733825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_022162.1	+1	reviewed	p.C167Y	0.922	35	0%	65	38.5%	3	0%	possibly_damaging(0.807)	deleterious(0.04)	deleterious(0.653)	HMMPfam_CARD,superfamily_DEATH domain
CTCF	10664	genome.wustl.edu	37	16	67654643	67654643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_006565.2	+1	reviewed	p.R377H	1.000	244	0%	254	48.8%	58	89.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
CTRB1	1504	genome.wustl.edu	37	16	75256927	75256927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001906.4	+1	validated	p.A73T	0.992	37	0%	14	64.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
CA5A	763	genome.wustl.edu	37	16	87936054	87936055	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001739.1	-1	reviewed	p.L177fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
NOS2	4843	genome.wustl.edu	37	17	26105788	26105788	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_000625.4	-1	reviewed	p.T403	0.186	217	0%	258	48.8%	0	-	-	-	-	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
CNTNAP1	8506	genome.wustl.edu	37	17	40839042	40839042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003632.2	+1	reviewed	p.R341H	0.667	13	0%	15	66.7%	21	57.1%	benign(0.038)	tolerated(0.33)	neutral(0.026)	superfamily_ConA_like_lec_gl
DHX40	79665	genome.wustl.edu	37	17	57644069	57644069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_024612.4	+1	reviewed	p.A65V	1.000	93	0%	99	41.4%	13	53.8%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCD2	6603	genome.wustl.edu	37	17	61911351	61911351	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001098426.1	-1	reviewed	p.R367*	1.000	120	0%	86	50%	148	11.4%	-	-	-	HMMPfam_SWIB,superfamily_MDM2
SEC14L1	6397	genome.wustl.edu	37	17	75208079	75208079	+	Silent	SNP	C	C	T	rs145965497	by1000genomes	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001039573.2	+1	reviewed	p.F553	1.000	122	0%	101	39.6%	45	57.7%	-	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
SEPT9	10801	genome.wustl.edu	37	17	75398665	75398665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001113491.1	+1	reviewed	p.A201T	0.000	12	0%	11	63.6%	101	45.5%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6982514	6982514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005559.2	-1	validated	p.L1958I	0.041	240	0%	186	15.6%	7	42.8%	possibly_damaging(0.728)	tolerated(0.21)	neutral(0.309)	superfamily_Concanavalin A-like lectins/glucanases
LOC646359	646359	genome.wustl.edu	37	18	14378685	14378685	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	XM_929288.3	-1	model	p.F26	0.002	20	0%	20	60%	0	-	-	-	-	NULL
ATP8B1	5205	genome.wustl.edu	37	18	55328610	55328610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_005603.4	-1	reviewed	p.R835W	0.773	140	0%	125	42.4%	3	100%	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	superfamily_SSF56784,superfamily_SSF81665
ZNF532	55205	genome.wustl.edu	37	18	56586709	56586709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018181.4	+1	validated	p.A397V	0.011	171	0%	209	44.5%	15	26.6%	benign(0.03)	tolerated(0.16)	neutral(0.061)	NULL
PLIN4	729359	genome.wustl.edu	37	19	4504922	4504922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001080400.1	-1	provisional	p.R1233H	0.006	7	0.000	12	0.333	1	100%	benign(0.013)	tolerated(0.17)	neutral(0.059)	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain
ACSBG2	81616	genome.wustl.edu	37	19	6166026	6166026	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_030924.3	+1	validated	p.N246	0.246	223	0%	193	43%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
MUC16	94025	genome.wustl.edu	37	19	9070753	9070753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_024690.2	-1	validated	p.V5565I	0.000	828	0.1%	698	11.5%	4	50%	unknown(0)	-	-	NULL
PRKACA	5566	genome.wustl.edu	37	19	14208688	14208688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002730.3	-1	reviewed	p.R145H	1.000	22	0%	22	45.5%	207	49.7%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YIF1B	90522	genome.wustl.edu	37	19	38799441	38799441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001039672.2	-1	validated	p.T177I	1.000	71	0%	74	37.8%	100	50%	benign(0.176)	tolerated(0.79)	neutral(0.017)	HMMPfam_YIF1
SAMD4B	55095	genome.wustl.edu	37	19	39873876	39873876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_018028.2	+1	provisional	p.E667D	1.000	199	0%	166	27.1%	57	14%	benign(0.026)	tolerated(0.93)	neutral(0.001)	NULL
CLPTM1	1209	genome.wustl.edu	37	19	45490603	45490603	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001294.1	+1	provisional	p.A320	0.998	46	0%	39	41%	88	50%	-	-	-	HMMPfam_CLPTM1
SNRNP70	6625	genome.wustl.edu	37	19	49593560	49593560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_003089.4	+1	validated	p.A54T	1.000	62	0%	68	45.6%	182	40.1%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
RCN3	57333	genome.wustl.edu	37	19	50040444	50040444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020650.2	+1	provisional	p.M200I	1.000	87	0%	96	11.5%	100	7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF47473
ZNF835	90485	genome.wustl.edu	37	19	57175767	57175767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001005850.1	-1	provisional	p.R289H	0.134	7	0.000	12	0.417	2	0%	benign(0.098)	tolerated(0.07)	neutral(0.327)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC24A3	57419	genome.wustl.edu	37	20	19261704	19261704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_020689.3	+1	validated	p.R82W	0.001	60	0%	60	58.3%	8	87.5%	possibly_damaging(0.912)	deleterious(0.02)	deleterious(0.746)	NULL
PLAGL2	5326	genome.wustl.edu	37	20	30784278	30784278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002657.3	-1	reviewed	p.R490C	1.000	24	0%	44	52.3%	7	42.8%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
ACSS2	55902	genome.wustl.edu	37	20	33507380	33507383	+	Splice_Site	DEL	GTGT	GTGT	-	rs143168521	byCluster;by1000genomes	TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	GTGT	GTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000475459	+1	known	e3+1	0.975:0.974	-	-	-	-	-	-	-	-	-	-
B4GALT5	9334	genome.wustl.edu	37	20	48256282	48256282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_004776.3	-1	validated	p.R284W	0.605	572	0%	492	41.7%	34	44.1%	benign(0.015)	tolerated(0.16)	neutral(0.060)	HMMPfam_Galactosyl_T_2,superfamily_SSF53448
CDH4	1002	genome.wustl.edu	37	20	60485572	60485572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001794.2	+1	reviewed	p.A428V	1.000	18	0%	19	21.1%	0	-	benign(0.138)	deleterious(0)	neutral(0.456)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
KRTAP19-1	337882	genome.wustl.edu	37	21	31852407	31852407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_181607.1	-1	provisional	p.R77H	0.000	580	0%	538	46.8%	0	-	unknown(0)	-	-	NULL
ZNF295	49854	genome.wustl.edu	37	21	43411428	43411428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001098402.1	-1	validated	p.R926H	1.000	76	0%	70	42.9%	13	53.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RRP1B	23076	genome.wustl.edu	37	21	45096709	45096709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_015056.2	+1	validated	p.T237I	0.004	178	0%	146	11%	5	20%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	NULL
PWP2	5822	genome.wustl.edu	37	21	45535214	45535214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000456705	+1	known	p.S147F	1.000	51	0%	33	54.5%	23	34.7%	unknown(0)	-	-	NULL
HMOX1	3162	genome.wustl.edu	37	22	35783150	35783150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_002133.1	+1	reviewed	p.A206V	0.936	56	0%	59	42.4%	49	32.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
TBL1X	6907	genome.wustl.edu	37	X	9683001	9683001	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001139466.1	+1	reviewed	p.N555	0.994	29	0%	25	36%	15	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
TLR7	51284	genome.wustl.edu	37	X	12906683	12906683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_016562.3	+1	reviewed	p.P1019L	1.000	473	0.2%	530	44.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
HDX	139324	genome.wustl.edu	37	X	83723496	83723496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_144657.4	-1	validated	p.N412I	1.000	59	0%	55	23.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000223499	0	genome.wustl.edu	37	X	118207887	118207887	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	ENST00000419982	+1	known	p.E200	0.000	131	0%	125	49.6%	0	-	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129150016	129150016	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_021946.3	+1	reviewed	p.R1090*	0.732	35	0%	54	11.1%	15	0%	-	-	-	NULL
SPANXN1	494118	genome.wustl.edu	37	X	144337285	144337285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001009614.2	+1	reviewed	p.R57M	0.000	957	0.1%	1071	45.8%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMPfam_SPAN-X
FLNA	2316	genome.wustl.edu	37	X	153580009	153580009	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05Y-01A-11W-A027-09	TCGA-AX-A05Y-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7ad39cba-d236-44df-99a9-3dd4ff04b270	0fb9213c-86b7-40a7-b28c-e407d0ecc0ba	NM_001110556.1	-1	reviewed	p.F2321	1.000	8	0.000	11	0.364	234	80.3%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
