Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MIB2	142678	genome.wustl.edu	37	1	1563171	1563171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_080875.2	+1	validated	p.R606W	0.658	21	0%	20	45%	57	42.1%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RPL22	6146	broad.mit.edu	37	1	6246852	6246852	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000983.3	-1	reviewed	p.K89fs	0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
H6PD	9563	genome.wustl.edu	37	1	9324075	9324075	+	Missense_Mutation	SNP	G	G	A	rs184842419	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004285.3	+1	reviewed	p.G508D	0.344	59	1.7%	62	41.9%	4	50%	benign(0.019)	tolerated(0.43)	neutral(0.014)	superfamily_SSF55347
KIF1B	23095	genome.wustl.edu	37	1	10421064	10421064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015074.3	+1	reviewed	p.G1332V	1.000	205	0%	167	41.3%	11	72.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBIAD1	29914	genome.wustl.edu	37	1	11333899	11333899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_013319.2	+1	reviewed	p.Y104S	1.000	149	0%	93	36.6%	21	47.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_UbiA
MTHFR	4524	genome.wustl.edu	37	1	11861221	11861221	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005957.4	-1	reviewed	p.G158*	1.000	67	0%	48	33.3%	5	0%	-	-	-	HMMPfam_MTHFR,superfamily_FAD-linked oxidoreductase
PRAMEF7	441871	genome.wustl.edu	37	1	12978570	12978570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001012277.1	+1	provisional	p.L226M	0.883	365	0.3%	280	23.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RNI-like
PRDM2	7799	genome.wustl.edu	37	1	14068616	14068616	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012231.4	+1	reviewed	p.L116	1.000	106	0%	75	22.7%	3	0%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SPEN	23013	genome.wustl.edu	37	1	16202925	16202925	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015001.2	+1	reviewed	p.L211	1.000	76	0%	73	47.9%	2	50%	-	-	-	NULL
SDHB	6390	genome.wustl.edu	37	1	17371358	17371358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003000.2	-1	reviewed	p.A33V	1.000	197	0%	145	42.1%	75	44%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
UBR4	23352	genome.wustl.edu	37	1	19490859	19490859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020765.2	-1	validated	p.D1530N	1.000	92	0%	63	14.3%	7	14.2%	possibly_damaging(0.456)	tolerated(0.18)	neutral(0.205)	superfamily_ARM repeat
VWA5B1	127731	genome.wustl.edu	37	1	20680567	20680567	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001039500.2	+1	validated	p.S1153	0.009	57	0%	43	41.9%	0	-	-	-	-	NULL
ECE1	1889	genome.wustl.edu	37	1	21563258	21563258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001397.2	-1	reviewed	p.R490Q	1.000	222	0%	201	40.8%	130	40.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
EPHA8	2046	genome.wustl.edu	37	1	22927919	22927919	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020526.3	+1	reviewed	p.A952	0.116	33	0%	29	37.9%	0	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
FUCA1	2517	genome.wustl.edu	37	1	24172286	24172286	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000147.4	-1	reviewed	p.L440	0.004	122	0%	107	29.9%	47	23.4%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27101598	27101611	+	Frame_Shift_Del	DEL	CTGCCCCTGTGCAG	CTGCCCCTGTGCAG	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CTGCCCCTGTGCAG	CTGCCCCTGTGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006015.4	+1	reviewed	p.A1628fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NUDC	10726	genome.wustl.edu	37	1	27271923	27271923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006600.2	+1	provisional	p.P262S	1.000	64	0%	41	48.8%	379	42.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SMPDL3B	27293	genome.wustl.edu	37	1	28284995	28284995	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014474.2	+1	validated	p.V338	1.000	46	0%	30	43.3%	45	53.3%	-	-	-	NULL
PEF1	553115	genome.wustl.edu	37	1	32098793	32098793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012392.3	-1	reviewed	p.S150P	0.594	91	0%	65	44.6%	107	47.6%	benign(0.02)	tolerated(0.72)	neutral(0.003)	superfamily_SSF47473
EIF3I	8668	genome.wustl.edu	37	1	32691819	32691819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003757.2	+1	validated	p.G100S	1.000	136	0%	110	38.2%	470	46.1%	benign(0.002)	tolerated(0.56)	neutral(0.006)	superfamily_WD40 repeat-like
TMEM54	113452	genome.wustl.edu	37	1	33361166	33361166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033504.2	-1	provisional	p.T150I	0.999	96	0%	69	23.2%	93	20.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34128538	34128538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_052896.3	-1	validated	p.S1363G	1.000	57	0%	25	40%	0	-	benign(0.023)	tolerated(0.16)	neutral(0.060)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34209071	34209071	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_052896.3	-1	validated	p.N621	0.518	90	0%	62	35.5%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
THRAP3	9967	genome.wustl.edu	37	1	36762298	36762298	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005119.3	+1	validated	p.R744*	1.000	158	0%	117	44.4%	69	5.7%	-	-	-	NULL
TIE1	7075	genome.wustl.edu	37	1	43772843	43772843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005424.2	+1	provisional	p.C224Y	1.000	49	0%	37	35.1%	9	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_EGF
SZT2	23334	genome.wustl.edu	37	1	43900122	43900122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015284.2	+1	predicted	p.R1058M	1.000	54	0%	34	23.5%	7	42.8%	probably_damaging(0.992)	tolerated(0.11)	deleterious(0.719)	NULL
CCDC24	149473	genome.wustl.edu	37	1	44459607	44459607	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152499.1	+1	provisional	p.S156	0.101	105	0%	72	37.5%	31	25.8%	-	-	-	NULL
CCDC24	149473	genome.wustl.edu	37	1	44461479	44461479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152499.1	+1	provisional	p.Q218*	0.999	121	0%	56	46.4%	30	33.3%	-	-	-	NULL
LRRC41	10489	genome.wustl.edu	37	1	46744469	46744469	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000254454	-1	known	p.Q813*	1.000	36	0%	19	47.4%	266	45.1%	-	-	-	NULL
LRRC41	10489	genome.wustl.edu	37	1	46768841	46768841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006369.4	-1	validated	p.R52W	0.997	22	0%	25	48%	26	26.9%	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
ORC1	4998	genome.wustl.edu	37	1	52851576	52851576	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004153.2	-1	reviewed	p.R477*	0.997	73	0%	43	30.2%	3	0%	-	-	-	NULL
FAM151A	338094	genome.wustl.edu	37	1	55077377	55077377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_176782.2	-1	validated	p.S281L	0.004	89	0%	66	34.8%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_DUF2181
WDR78	79819	genome.wustl.edu	37	1	67390376	67390376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024763.4	-1	validated	p.A47T	0.001	139	0%	146	42.5%	3	0%	possibly_damaging(0.753)	tolerated(0.1)	deleterious(0.563)	NULL
WLS	79971	genome.wustl.edu	37	1	68610280	68610280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001002292.2	-1	validated	p.M443T	1.000	102	0%	60	46.7%	294	36.7%	benign(0.005)	tolerated(0.07)	neutral(0.319)	NULL
SRSF11	9295	genome.wustl.edu	37	1	70716482	70716482	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004768.2	+1	reviewed	p.S483	1.000	57	0%	50	46%	92	42.3%	-	-	-	NULL
TNNI3K	51086	genome.wustl.edu	37	1	74716397	74716397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001112808.1	+1	validated	p.R194S	1.000	194	0%	199	41.7%	1	100%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NEXN	91624	genome.wustl.edu	37	1	78408498	78408498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144573.3	+1	reviewed	p.I671T	1.000	145	0%	125	43.2%	4	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CSF1	1435	genome.wustl.edu	37	1	110466017	110466017	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000757.4	+1	validated	p.C258	0.998	68	0%	62	46.8%	3	0%	-	-	-	HMMPfam_CSF-1
WNT2B	7482	genome.wustl.edu	37	1	113059841	113059841	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024494.2	+1	reviewed	p.R260	1.000	74	1.4%	41	46.3%	1	100%	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
MAGI3	260425	genome.wustl.edu	37	1	113933670	113933672	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001142782.1	+1	validated	p.K9in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_PDZ
PHGDH	26227	genome.wustl.edu	37	1	120279801	120279801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006623.3	+1	reviewed	p.A286V	1.000	90	0%	92	35.9%	203	53.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2-Hacid_dh,superfamily_NAD(P)-binding Rossmann-fold domains
ANKRD35	148741	genome.wustl.edu	37	1	145558937	145558937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144698.3	+1	validated	p.D186N	1.000	49	0%	39	41%	16	62.5%	probably_damaging(0.979)	tolerated(0.93)	neutral(0.422)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
S100A12	6283	genome.wustl.edu	37	1	153346945	153346945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005621.1	-1	reviewed	p.A42T	0.000	169	0%	100	45%	0	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	HMMPfam_S_100,superfamily_SSF47473
CRTC2	200186	genome.wustl.edu	37	1	153920692	153920692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_181715.1	-1	provisional	p.R659C	0.963	145	0%	120	40%	62	38.7%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
TDRD10	126668	genome.wustl.edu	37	1	154480959	154480959	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001098475.1	+1	validated	e3+2	0.956	392	0.5%	383	40.2%	0	-	-	-	-	-
KCNN3	3782	genome.wustl.edu	37	1	154832171	154832171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_170782.1	-1	reviewed	p.K6N	0.001	160	0%	118	52.5%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_SK_channel
BCAN	63827	genome.wustl.edu	37	1	156616845	156616845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021948.3	+1	validated	p.A115V	0.449	16	0%	15	46.7%	1	0%	possibly_damaging(0.808)	tolerated(0.1)	deleterious(0.591)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR10J3	441911	genome.wustl.edu	37	1	159283832	159283832	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001004467.1	-1	provisional	p.C206	0.011	137	0%	109	45.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ATP1A2	477	genome.wustl.edu	37	1	160099121	160099121	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000447527	+1	known	p.Q175R	0.774	108	0%	84	46.4%	3	33.3%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
HSPA6	3310	genome.wustl.edu	37	1	161495096	161495096	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002155.3	+1	validated	p.A216	0.212	98	0%	85	22.4%	4	0%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
KLHL20	27252	genome.wustl.edu	37	1	173726140	173726140	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014458.3	+1	reviewed	p.A331	0.999	232	0%	174	48.9%	9	33.3%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
TMCC2	9911	genome.wustl.edu	37	1	205241129	205241129	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014858.3	+1	validated	p.T669	0.988	142	0%	113	19.5%	5	0%	-	-	-	HMMPfam_Tmemb_cc2
SLC26A9	115019	genome.wustl.edu	37	1	205892557	205892557	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_134325.2	-1	reviewed	e14-2	1.000	308	0.3%	285	41.1%	0	-	-	-	-	-
ANGEL2	90806	genome.wustl.edu	37	1	213180442	213180444	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000310246	-1	known	p.F226in_frame_del	0.007:0.006:0.011	-	-	-	-	-	-	-	-	-	HMMPfam_Exo_endo_phos
ENAH	55740	genome.wustl.edu	37	1	225742649	225742649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001008493.1	-1	validated	p.A103V	1.000	236	0.4%	151	38.4%	93	48.3%	unknown(0)	tolerated(0.07)	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
TTC13	79573	genome.wustl.edu	37	1	231076227	231076227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024525.4	-1	validated	p.R250W	1.000	163	0%	96	35.4%	6	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
GNPAT	8443	genome.wustl.edu	37	1	231401164	231401164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014236.3	+1	reviewed	p.R232W	0.994	251	0%	178	45.5%	28	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
EGLN1	54583	genome.wustl.edu	37	1	231557114	231557114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022051.2	-1	reviewed	p.S174N	0.423	17	0%	14	35.7%	34	38.2%	benign(0.236)	tolerated(0.39)	neutral(0.040)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233120134	233120134	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000429988	-1	known	p.R911W	0.000	57	0%	36	36.1%	8	50%	-	-	-	NULL
KIF26B	55083	genome.wustl.edu	37	1	245766038	245766038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018012.3	+1	provisional	p.P504T	1.000	168	0%	125	44%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR2T3	343173	genome.wustl.edu	37	1	248637030	248637030	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001005495.1	+1	provisional	p.R127*	1.000	321	0%	241	37.3%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
COLEC11	78989	genome.wustl.edu	37	2	3673612	3673612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_199235.1	+1	validated	p.Q41H	0.003	137	0%	107	33.6%	0	-	benign(0.009)	-	-	NULL
ADAM17	6868	genome.wustl.edu	37	2	9633093	9633093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003183.4	-1	reviewed	p.I672	0.654	141	0%	121	14%	24	8.3%	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698727	17698727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001099218.2	-1	provisional	p.A319V	0.000	217	0.5%	213	46.5%	0	-	benign(0.01)	tolerated(0.62)	neutral(0.005)	NULL
ITSN2	50618	genome.wustl.edu	37	2	24477257	24477257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006277.2	-1	reviewed	p.A978T	0.000	174	0%	173	43.4%	9	88.8%	benign(0.005)	tolerated(0.62)	neutral(0.004)	superfamily_SH3-domain
AGBL5	60509	genome.wustl.edu	37	2	27282252	27282252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021831.5	+1	validated	p.R690L	1.000	55	0%	54	42.6%	31	48.3%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
FAM179A	165186	genome.wustl.edu	37	2	29237283	29237283	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_199280.2	+1	validated	p.P300	0.000	99	0%	79	48.1%	0	-	-	-	-	NULL
C2orf71	388939	genome.wustl.edu	37	2	29293523	29293523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001029883.1	-1	provisional	p.R1202Q	0.000	81	1.2%	63	49.2%	0	-	unknown(0)	tolerated(0.09)	-	NULL
EIF2AK2	5610	genome.wustl.edu	37	2	37336400	37336400	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001135651.1	-1	validated	p.Y472	0.747	114	0%	99	34.3%	14	42.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NRXN1	9378	genome.wustl.edu	37	2	50765655	50765655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001135659.1	-1	reviewed	p.F667V	1.000	200	0%	126	45.2%	0	-	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
SPTBN1	6711	genome.wustl.edu	37	2	54882220	54882220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003128.2	+1	reviewed	p.V1946I	1.000	138	0%	100	39%	92	32.6%	possibly_damaging(0.589)	deleterious(0.01)	deleterious(0.609)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CEP68	23177	genome.wustl.edu	37	2	65299164	65299164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015147.2	+1	validated	p.G312R	0.001	56	0%	51	47.1%	7	57.1%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
PROKR1	10887	genome.wustl.edu	37	2	68882462	68882462	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138964.2	+1	validated	p.T312	0.001	136	0%	110	47.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DYSF	8291	genome.wustl.edu	37	2	71891424	71891424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001130987.1	+1	reviewed	p.P1677H	1.000	66	0%	43	30.2%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
INO80B	83444	genome.wustl.edu	37	2	74682268	74682268	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_031288.2	+1	validated	p.S9C	0.995	107	0%	76	36.8%	7	57.1%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
TCF7L1	83439	genome.wustl.edu	37	2	85361149	85361149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_031283.1	+1	provisional	p.R87H	1.000	47	0%	31	38.7%	66	51.5%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_CTNNB1_binding
RNF103	7844	genome.wustl.edu	37	2	86831641	86831641	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005667.2	-1	reviewed	p.W461*	1.000	163	0%	144	39.6%	15	40%	-	-	-	NULL
FER1L5	90342	genome.wustl.edu	37	2	97355493	97355493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001113382.1	+1	provisional	p.V875M	0.058	34	0%	26	38.5%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00693
C2orf55	343990	genome.wustl.edu	37	2	99454586	99454586	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_207362.2	-1	validated	p.L79	0.731	200	0%	185	42.7%	1	0%	-	-	-	NULL
TBC1D8	11138	genome.wustl.edu	37	2	101624532	101624532	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001102426.1	-1	validated	p.S1058	0.000	70	0%	59	49.2%	18	44.4%	-	-	-	NULL
IL36A	27179	genome.wustl.edu	37	2	113764197	113764197	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014440.1	+1	provisional	p.C49	0.185	256	0.4%	175	42.9%	0	-	-	-	-	HMMSmart_IL1,superfamily_Cytok_IL1_like
FOXD4L1	200350	genome.wustl.edu	37	2	114258024	114258024	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012184.4	+1	reviewed	p.G397	1.000	44	0%	39	74.4%	1	0%	-	-	-	NULL
INHBB	3625	genome.wustl.edu	37	2	121107386	121107386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002193.2	+1	reviewed	p.D387G	1.000	23	0%	20	40%	1	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
CCDC74B	91409	genome.wustl.edu	37	2	130900593	130900593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000409234	-1	known	p.G182C	0.000	29	0%	25	44%	0	-	probably_damaging(0.998)	-	-	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414840	131414840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_929706.3	+1	model	p.H836R	1.000	103	0%	83	21.7%	0	-	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MCM6	4175	genome.wustl.edu	37	2	136616965	136616965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005915.4	-1	reviewed	p.A423V	1.000	142	0%	112	31.2%	37	18.9%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
NR4A2	4929	genome.wustl.edu	37	2	157184975	157184975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006186.3	-1	reviewed	p.R312Q	1.000	174	0%	121	22.3%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TANK	10010	genome.wustl.edu	37	2	162087942	162087942	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004180.2	+1	reviewed	p.A327	0.000	72	0%	76	40.8%	79	40.5%	-	-	-	NULL
LRP2	4036	genome.wustl.edu	37	2	170025122	170025122	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004525.2	-1	reviewed	p.C3854	0.574	211	0%	142	46.5%	0	-	benign(0.008)	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
UBE2E3	10477	genome.wustl.edu	37	2	181927519	181927519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000410062	+1	known	p.G176R	1.000	102	0%	61	50.8%	205	39%	-	-	-	HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
CERKL	375298	genome.wustl.edu	37	2	182409425	182409425	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001030311.2	-1	reviewed	e12+2	1.000	168	0%	186	43%	0	-	-	-	-	-
CERKL	375298	genome.wustl.edu	37	2	182438596	182438596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001030311.2	-1	reviewed	p.P166L	1.000	153	0%	138	15.9%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
STAT1	6772	genome.wustl.edu	37	2	191845387	191845387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007315.3	-1	reviewed	p.A531T	0.034	139	0%	110	40.9%	57	12.2%	benign(0.001)	tolerated(0.15)	neutral(0.241)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
RFTN2	130132	genome.wustl.edu	37	2	198498595	198498595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144629.2	-1	validated	p.G189S	0.000	327	0.3%	229	38.4%	3	33.3%	benign(0)	tolerated(1)	-	NULL
CASP8	841	genome.wustl.edu	37	2	202149996	202149996	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080125.1	+1	reviewed	p.W479C	1.000	81	0%	53	13.2%	27	11.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
FZD7	8324	genome.wustl.edu	37	2	202899385	202899385	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003507.1	+1	reviewed	p.G5	0.968	18	0%	16	43.8%	1	0%	-	-	-	NULL
PARD3B	117583	genome.wustl.edu	37	2	206305230	206305230	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152526.4	+1	validated	p.R898	1.000	167	0%	116	12.9%	6	0%	-	-	-	NULL
NRP2	8828	genome.wustl.edu	37	2	206562374	206562374	+	Silent	SNP	C	C	T	rs183290527	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_201266.1	+1	reviewed	p.Y60	0.105	165	0%	157	40.8%	17	41.1%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
EEF1B2	1933	genome.wustl.edu	37	2	207025367	207025367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001037663.1	+1	reviewed	p.P46S	0.992	171	0%	164	42.1%	645	36.4%	benign(0.001)	tolerated(0.9)	-	superfamily_Glutathione S-transferase (GST) C-terminal domain
CRYGB	1419	genome.wustl.edu	37	2	209007468	209007468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005210.3	-1	validated	p.R141M	0.993	97	0%	72	40.3%	0	-	possibly_damaging(0.659)	deleterious(0.01)	deleterious(0.638)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
IHH	3549	genome.wustl.edu	37	2	219920273	219920273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002181.3	-1	reviewed	p.V298M	1.000	38	0%	17	52.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hint,HMMSmart_SM00306,superfamily_Hedgehog/intein (Hint) domain
SP140L	93349	genome.wustl.edu	37	2	231226362	231226362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138402.4	+1	provisional	p.D158G	0.000	273	0%	261	43.7%	7	42.8%	possibly_damaging(0.778)	tolerated(0.33)	neutral(0.315)	NULL
CHRNG	1146	genome.wustl.edu	37	2	233404490	233404490	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005199.4	+1	reviewed	p.L11	0.282	57	0%	41	48.8%	2	0%	-	-	-	NULL
NGEF	25791	genome.wustl.edu	37	2	233785079	233785079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_019850.2	-1	validated	p.R248M	0.996	89	0%	92	35.9%	2	0%	possibly_damaging(0.848)	deleterious(0.01)	deleterious(0.731)	NULL
INPP5D	3635	genome.wustl.edu	37	2	234073032	234073032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000359570	+1	known	p.C506Y	1.000	63	0%	45	46.7%	6	0%	benign(0.338)	tolerated(0.61)	neutral(0.111)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
USP40	55230	genome.wustl.edu	37	2	234436070	234436070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018218.2	-1	validated	p.R581W	0.539	140	0%	129	30.2%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241468537	241468537	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000443318	-1	known	p.V146I	0.000	272	0%	227	27.3%	0	-	-	-	-	NULL
SRGAP3	9901	genome.wustl.edu	37	3	9166505	9166505	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000433332	-1	known	p.G61*	1.000	103	0%	63	38.1%	4	50%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
BRPF1	7862	genome.wustl.edu	37	3	9781274	9781274	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001003694.1	+1	reviewed	p.C397	1.000	55	1.8%	38	36.8%	17	41.1%	-	-	-	HMMSmart_PHD
SLC6A1	6529	genome.wustl.edu	37	3	11075367	11075367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003042.3	+1	validated	p.S490F	1.000	183	0%	172	47.7%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	HMMPfam_SNF
EAF1	85403	genome.wustl.edu	37	3	15473731	15473731	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033083.6	+1	validated	e3+1	1.000	115	0%	93	47.3%	0	-	-	-	-	-
COLQ	8292	genome.wustl.edu	37	3	15518671	15518671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005677.3	-1	reviewed	p.P143S	1.000	78	0%	62	38.7%	0	-	unknown(0)	-	-	HMMPfam_Collagen
BTD	686	genome.wustl.edu	37	3	15686644	15686644	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000060.2	+1	reviewed	p.L427	0.078	167	0%	140	48.6%	10	50%	-	-	-	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16260917	16260917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_054110.4	+1	validated	p.K467R	0.904	104	0%	92	20.7%	1	0%	benign(0.002)	tolerated(0.36)	neutral(0.020)	superfamily_SSF53448
XIRP1	165904	genome.wustl.edu	37	3	39228612	39228612	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_194293.2	-1	provisional	p.L775	0.659	84	0%	59	40.7%	1	0%	-	-	-	NULL
KBTBD5	131377	genome.wustl.edu	37	3	42730434	42730434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152393.2	+1	validated	p.A499T	1.000	79	0%	63	38.1%	0	-	possibly_damaging(0.594)	tolerated(0.1)	deleterious(0.491)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FBXW12	285231	genome.wustl.edu	37	3	48414323	48414323	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_207102.2	+1	validated	p.L22	0.566	216	0.9%	171	44.4%	0	-	-	-	-	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
CELSR3	1951	genome.wustl.edu	37	3	48698223	48698224	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001407.2	-1	reviewed	p.E615fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SEMA3B	7869	genome.wustl.edu	37	3	50314031	50314031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004636.2	+1	reviewed	p.R715C	0.000	13	0.000	7	0.571	25	48%	unknown(0)	-	-	NULL
ZMYND10	51364	genome.wustl.edu	37	3	50380589	50380589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015896.2	-1	validated	p.A187T	0.998	243	0%	257	44.7%	3	66.6%	benign(0.119)	tolerated(0.14)	neutral(0.259)	NULL
GRM2	2912	genome.wustl.edu	37	3	51746671	51746671	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000839.3	+1	reviewed	p.A211	0.647	188	0%	123	45.5%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
STAB1	23166	genome.wustl.edu	37	3	52546387	52546387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015136.2	+1	reviewed	p.R972W	0.893	107	0%	120	41.7%	2	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_FAS1 domain,HMMSmart_SM00181
STAB1	23166	genome.wustl.edu	37	3	52548230	52548230	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015136.2	+1	reviewed	e33+1	1.000	62	0%	46	52.2%	0	-	-	-	-	-
STAB1	23166	genome.wustl.edu	37	3	52554927	52554927	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015136.2	+1	reviewed	p.R1938	0.000	36	0%	38	52.6%	10	0%	-	-	-	NULL
GLT8D1	55830	genome.wustl.edu	37	3	52729267	52729267	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001010983.1	-1	reviewed	p.L288	0.998	323	0%	289	48.1%	96	40.6%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
LRTM1	57408	genome.wustl.edu	37	3	54952687	54952687	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020678.2	-1	provisional	p.P279	0.000	138	0%	94	31.9%	0	-	-	-	-	NULL
KBTBD8	84541	genome.wustl.edu	37	3	67058507	67058507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032505.2	+1	validated	p.Y476H	1.000	119	0%	108	38%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MIR1284	100302112	genome.wustl.edu	37	3	71591189	71591189	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000408337	-1	known	NULL	1.000	66	0%	56	50%	0	-	-	-	-	-
EPHA3	2042	genome.wustl.edu	37	3	89480412	89480412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005233.5	+1	reviewed	p.R750Q	1.000	206	0%	151	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
ILDR1	286676	genome.wustl.edu	37	3	121712606	121712606	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_175924.2	-1	provisional	p.I286	1.000	148	0%	126	45.2%	9	66.6%	-	-	-	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125731562	125731562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001008485.1	-1	validated	p.T334I	1.000	111	0%	77	41.6%	62	37%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
TXNRD3NB	645840	genome.wustl.edu	37	3	126291106	126291106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001039783.1	-1	provisional	p.P94L	0.000	201	0%	190	37.9%	0	-	unknown(0)	-	-	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130442277	130442277	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014602.2	-1	validated	p.Y654	0.692	205	0%	133	45.1%	11	45.4%	-	-	-	superfamily_ARM-type_fold
AMOTL2	51421	genome.wustl.edu	37	3	134090120	134090120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016201.2	-1	reviewed	p.Q52H	0.817	47	0%	34	52.9%	35	40%	possibly_damaging(0.74)	tolerated(0.4)	neutral(0.287)	NULL
ZIC1	7545	genome.wustl.edu	37	3	147128732	147128732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003412.3	+1	reviewed	p.R278H	1.000	120	0%	82	37.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ZnF_C2H2
SLITRK3	22865	genome.wustl.edu	37	3	164906563	164906563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014926.2	-1	validated	p.L686M	1.000	76	1.3%	53	43.4%	0	-	probably_damaging(0.953)	tolerated(0.07)	deleterious(0.716)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006218.2	+1	reviewed	p.R88Q	1.000	93	0%	74	35.1%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
DVL3	1857	genome.wustl.edu	37	3	183883261	183883261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004423.3	+1	reviewed	p.T249A	1.000	133	0%	129	20.9%	96	19.7%	possibly_damaging(0.554)	deleterious(0.02)	deleterious(0.572)	HMMPfam_PDZ,superfamily_PDZ
POLR2H	5437	genome.wustl.edu	37	3	184084504	184084504	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006232.2	+1	reviewed	e4-1	1.000	133	0%	99	31.3%	3	0%	-	-	-	-
LSG1	55341	genome.wustl.edu	37	3	194386287	194386287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018385.2	-1	reviewed	p.S174R	1.000	179	0%	155	43.2%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
MUC4	4585	genome.wustl.edu	37	3	195516936	195516936	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018406.5	-1	reviewed	p.L505	0.000	290	0%	253	33.2%	0	-	-	-	-	NULL
PIGZ	80235	genome.wustl.edu	37	3	196675508	196675508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_025163.2	-1	reviewed	p.S87N	0.998	7	0.000	7	0.571	2	0%	benign(0.011)	tolerated(0.07)	neutral(0.320)	HMMPfam_Glyco_transf_22
SLC26A1	10861	genome.wustl.edu	37	4	983143	983143	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022042.2	-1	reviewed	p.F528	0.946	27	0%	21	42.9%	0	-	-	-	-	NULL
TACC3	10460	genome.wustl.edu	37	4	1732991	1732991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006342.1	+1	reviewed	p.L518F	0.001	38	0%	36	52.8%	100	41%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1980610	1980610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001042424.2	+1	reviewed	p.W1358R	0.285	25	0%	12	41.7%	21	61.9%	unknown(0)	deleterious(0)	-	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8220069	8220069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018986.3	+1	validated	p.L304P	0.000	120	0%	96	44.8%	3	0%	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_SH3-domain
SLIT2	9353	genome.wustl.edu	37	4	20259539	20259539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004787.1	+1	provisional	p.Q100H	1.000	182	0%	131	44.3%	5	60%	benign(0.056)	tolerated(0.14)	neutral(0.253)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
KIAA1239	57495	genome.wustl.edu	37	4	37448440	37448440	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001144990.1	+1	validated	p.I1610	0.999	124	0%	118	48.3%	0	-	-	-	-	superfamily_WD40_like
TLR6	10333	genome.wustl.edu	37	4	38829899	38829899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006068.3	-1	validated	p.T399M	0.997	112	0%	99	48.5%	0	-	probably_damaging(0.969)	tolerated(0.2)	neutral(0.460)	superfamily_SSF52058
DCAF4L1	285429	genome.wustl.edu	37	4	41984044	41984044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001029955.3	+1	validated	p.A79T	1.000	99	0%	93	41.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_WD40 repeat-like
KIT	3815	genome.wustl.edu	37	4	55573419	55573419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000222.2	+1	reviewed	p.D361N	0.000	127	0%	137	43.8%	0	-	benign(0.247)	tolerated(0.22)	neutral(0.067)	HMMSmart_IG,superfamily_SSF48726
UBA6	55236	genome.wustl.edu	37	4	68490818	68490818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018227.5	-1	validated	p.R869H	1.000	258	0.4%	161	42.9%	15	46.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_UBACT,superfamily_Activating enzymes of the ubiquitin-like proteins
TMPRSS11E	28983	genome.wustl.edu	37	4	69342005	69342005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014058.3	+1	validated	p.L186I	0.000	208	0%	148	45.9%	1	100%	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_Pept_Ser_Cys
TET2	54790	genome.wustl.edu	37	4	106196434	106196434	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001127208.1	+1	validated	p.Y1589	0.930	224	0.4%	174	17.2%	3	0%	-	-	-	NULL
ALPK1	80216	genome.wustl.edu	37	4	113350370	113350370	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001102406.1	+1	validated	p.A287	0.983	113	0%	91	34.1%	3	0%	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114120177	114120177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001148.4	+1	reviewed	p.T99I	1.000	235	0%	192	20.8%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
NDST4	64579	genome.wustl.edu	37	4	115767133	115767133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022569.1	-1	provisional	p.T654I	0.189	146	0%	112	48.2%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
LOC645513	645513	genome.wustl.edu	37	4	120382931	120382931	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XR_078309.1	+1	model	NULL	0.998	68	0%	62	35.5%	6	66.6%	-	-	-	-
BBS12	166379	genome.wustl.edu	37	4	123664822	123664822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152618.2	+1	reviewed	p.A592V	1.000	176	0%	168	41.1%	4	50%	probably_damaging(0.966)	tolerated(0.07)	deleterious(0.727)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
PLK4	10733	genome.wustl.edu	37	4	128814571	128814571	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014264.3	+1	reviewed	p.E774*	1.000	123	0%	118	36.4%	12	0%	-	-	-	superfamily_Kinase_like
SLC10A7	84068	genome.wustl.edu	37	4	147177648	147177648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001029998.3	-1	validated	p.V340I	0.994	75	0%	56	32.1%	3	33.3%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
TMA16	55319	genome.wustl.edu	37	4	164440656	164440656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018352.2	+1	validated	p.A201V	0.951	79	0%	52	15.4%	21	14.2%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	NULL
GALNTL6	442117	genome.wustl.edu	37	4	173942660	173942660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001034845.2	+1	validated	p.P508S	0.998	144	0%	79	39.2%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
SPCS3	60559	genome.wustl.edu	37	4	177249389	177249389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021928.3	+1	validated	p.V151I	1.000	188	1.1%	161	36.6%	72	44.4%	benign(0.006)	tolerated(1)	-	HMMPfam_SPC22
STOX2	56977	genome.wustl.edu	37	4	184932385	184932385	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000506529	+1	known	p.R154C	0.019	127	0%	93	44.1%	0	-	-	-	-	NULL
IRX1	79192	genome.wustl.edu	37	5	3600261	3600261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024337.3	+1	validated	p.A400V	1.000	23	0%	29	41.4%	0	-	benign(0.184)	tolerated(0.08)	neutral(0.317)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13830727	13830727	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001369.2	-1	reviewed	p.G2014*	1.000	178	0%	123	44.7%	0	-	-	-	-	HMMSmart_AAA,superfamily_SSF52540
TRIO	7204	genome.wustl.edu	37	5	14369542	14369542	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007118.2	+1	validated	p.G1042	0.001	104	0%	89	46.1%	8	50%	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14508116	14508116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007118.2	+1	validated	p.A2960V	1.000	162	0%	117	36.8%	45	46.6%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NIM1	167359	genome.wustl.edu	37	5	43277388	43277388	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_153361.2	+1	provisional	p.K174	1.000	131	0%	140	39.3%	1	100%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITGA2	3673	genome.wustl.edu	37	5	52344308	52344308	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002203.3	+1	reviewed	e5+1	1.000	267	0%	185	42.7%	0	-	-	-	-	-
ACTBL2	345651	genome.wustl.edu	37	5	56777904	56777904	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001017992.2	-1	validated	p.R211*	1.000	77	0%	59	44.1%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MAST4	375449	genome.wustl.edu	37	5	66462539	66462539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015183.2	+1	validated	p.G2322D	0.837	37	0%	51	56.9%	4	50%	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73181904	73181904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080479.2	+1	reviewed	p.W1095C	1.000	113	0%	101	41.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ANKRD31	256006	genome.wustl.edu	37	5	74387163	74387163	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000274361	-1	known	p.Y1742fs	1.000	-	-	-	-	-	-	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	89971904	89971904	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032119.3	+1	reviewed	p.A1774G	0.726	53	0%	58	24.1%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Calx-beta,HMMSmart_SM00237
DTWD2	285605	genome.wustl.edu	37	5	118264299	118264301	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173666.2	-1	validated	p.I177in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DTW
DTWD2	285605	genome.wustl.edu	37	5	118274969	118274969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173666.2	-1	validated	p.R109H	1.000	187	0.5%	140	41.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_DTW
DMXL1	1657	genome.wustl.edu	37	5	118533612	118533612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005509.4	+1	validated	p.R2569H	1.000	180	0%	184	20.7%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
HSD17B4	3295	genome.wustl.edu	37	5	118813188	118813188	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000414835	+1	known	e1+1	0.002	97	0%	63	42.9%	45	33.3%	-	-	-	-
LOX	4015	genome.wustl.edu	37	5	121409720	121409720	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002317.5	-1	reviewed	p.T341	0.622	123	0%	67	44.8%	91	30.7%	-	-	-	HMMPfam_Lysyl_oxidase
SLC22A5	6584	genome.wustl.edu	37	5	131724709	131724709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000447841	+1	known	p.A36V	0.998	83	0%	56	42.9%	13	7.6%	-	-	-	NULL
TMCO6	55374	genome.wustl.edu	37	5	140019135	140019135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018502.3	+1	provisional	p.R8H	0.007	11	0%	13	53.8%	1	0%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
NDUFA2	4695	genome.wustl.edu	37	5	140025206	140025206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002488.4	-1	reviewed	p.R89T	0.981	203	0%	141	41.8%	445	41.1%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140237080	140237080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018901.2	+1	reviewed	p.A483T	0.346	93	0%	53	45.3%	0	-	benign(0.115)	tolerated(0.5)	neutral(0.019)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140255331	140255331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018903.2	+1	reviewed	p.R92C	0.993	80	0%	112	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHB15	56121	genome.wustl.edu	37	5	140626827	140626827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018935.2	+1	reviewed	p.V561M	0.655	58	0%	50	36%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Cadherin
GRXCR2	643226	genome.wustl.edu	37	5	145239452	145239452	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080516.1	-1	provisional	p.C197	0.991	52	0%	35	57.1%	0	-	-	-	-	NULL
ADRB2	154	genome.wustl.edu	37	5	148206747	148206747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000024.5	+1	reviewed	p.T118M	1.000	226	0%	175	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CSNK1A1	1452	genome.wustl.edu	37	5	148886627	148886627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001025105.1	-1	validated	p.Y302H	1.000	121	0%	115	47%	143	51.7%	possibly_damaging(0.804)	deleterious(0.03)	deleterious(0.667)	superfamily_Kinase_like
PDGFRB	5159	genome.wustl.edu	37	5	149499073	149499073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002609.3	-1	reviewed	p.R919W	1.000	139	0.7%	109	36.7%	30	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
NDST1	3340	genome.wustl.edu	37	5	149929320	149929320	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001543.4	+1	validated	p.T799	1.000	145	0%	111	51.4%	25	52%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TNIP1	10318	genome.wustl.edu	37	5	150422142	150422142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006058.3	-1	validated	p.R365C	1.000	85	0%	50	34%	145	39.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160033864	160033864	+	Missense_Mutation	SNP	C	C	T	rs184625643	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_025153.2	-1	validated	p.R1023Q	1.000	139	0%	95	41.1%	0	-	possibly_damaging(0.905)	tolerated(0.36)	neutral(0.380)	superfamily_HAD-like
SLIT3	6586	genome.wustl.edu	37	5	168187874	168187874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003062.2	-1	validated	p.R560W	0.997	127	0%	75	46.7%	13	30.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
KCNMB1	3779	genome.wustl.edu	37	5	169805894	169805894	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004137.2	-1	reviewed	p.Q130	0.044	162	0%	118	44.1%	15	6.6%	-	-	-	HMMPfam_CaKB
TRIM41	90933	genome.wustl.edu	37	5	180651586	180651586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033549.3	+1	validated	p.R196H	0.990	120	0%	93	11.8%	18	11.1%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_RING/U-box
TRIM26	7726	genome.wustl.edu	37	6	30164453	30164453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003449.3	-1	validated	p.R202Q	1.000	47	0%	38	44.7%	34	38.2%	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	NULL
TNXB	7148	genome.wustl.edu	37	6	32049355	32049355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_019105.6	-1	reviewed	p.R1278C	0.086	54	1.9%	49	40.8%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LOC100287516	100287516	genome.wustl.edu	37	6	32942491	32942491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_002342622.1	-1	model	p.T5I	1.000	74	0%	60	33.3%	111	43.2%	-	-	-	NULL
TMEM217	221468	genome.wustl.edu	37	6	37186506	37186506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_145316.3	-1	validated	p.I101V	0.990	198	0%	186	43.5%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
TREM2	54209	genome.wustl.edu	37	6	41129333	41129333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018965.2	-1	reviewed	p.N20S	0.643	67	0%	52	50%	4	0%	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	HMMPfam_V-set,superfamily_Immunoglobulin
TFEB	7942	genome.wustl.edu	37	6	41652342	41652342	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007162.2	-1	validated	p.L476	1.000	22	0%	20	30%	8	12.5%	-	-	-	NULL
PGC	5225	genome.wustl.edu	37	6	41710161	41710161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002630.3	-1	reviewed	p.V172I	0.000	64	0%	55	45.5%	2	100%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_Asp,superfamily_Pept_Aspartic
PTK7	5754	genome.wustl.edu	37	6	43100354	43100354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002821.3	+1	reviewed	p.A386V	0.992	32	0%	23	17.4%	72	11.1%	possibly_damaging(0.813)	tolerated(0.19)	neutral(0.356)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CUL9	23113	genome.wustl.edu	37	6	43152535	43152535	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015089.2	+1	validated	p.R163fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
CDC5L	988	genome.wustl.edu	37	6	44371579	44371579	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001253.2	+1	reviewed	p.L191	1.000	109	0.9%	84	41.7%	5	40%	-	-	-	NULL
BAI3	577	genome.wustl.edu	37	6	69758210	69758210	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001704.2	+1	reviewed	p.T747	0.819	93	0%	91	11%	0	-	-	-	-	NULL
FAM135A	57579	genome.wustl.edu	37	6	71185158	71185158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001105531.2	+1	validated	p.C68Y	1.000	137	0.7%	139	38.8%	2	0%	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72968801	72968801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014989.4	+1	reviewed	p.S1014P	1.000	175	0%	117	36.8%	0	-	benign(0.048)	tolerated(0.23)	neutral(0.045)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97677001	97677001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_198468.2	-1	predicted	p.A603V	1.000	136	0%	102	41.2%	5	60%	possibly_damaging(0.928)	tolerated(0.24)	neutral(0.413)	NULL
BEND3	57673	genome.wustl.edu	37	6	107390102	107390102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080450.2	-1	validated	p.G765R	1.000	88	0%	62	38.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BEN
SEC63	11231	genome.wustl.edu	37	6	108224173	108224173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007214.4	-1	reviewed	p.S362P	1.000	88	0%	68	39.7%	37	21.6%	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	HMMPfam_Sec63,HMMSmart_SEC63
AKD1	221264	genome.wustl.edu	37	6	109818747	109818747	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000490722	-1	known	p.W146*	1.000	85	0%	91	41.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DDO	8528	genome.wustl.edu	37	6	110714039	110714039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003649.2	-1	reviewed	p.A350V	0.522	37	0%	33	30.3%	3	0%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_DAO,superfamily_Nucleotide-binding domain
MAN1A1	4121	genome.wustl.edu	37	6	119510891	119510891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005907.2	-1	reviewed	p.Q495R	0.931	133	0%	90	45.6%	2	0%	possibly_damaging(0.518)	tolerated(0.44)	neutral(0.187)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
THEMIS	387357	genome.wustl.edu	37	6	128150875	128150875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001010923.2	-1	reviewed	p.C152Y	1.000	199	0.5%	156	47.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128319979	128319979	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000415046	-1	known	p.R145Q	0.574	146	0%	105	16.2%	20	5%	-	-	-	NULL
STX7	8417	genome.wustl.edu	37	6	132793423	132793423	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003569.2	-1	validated	p.Q83*	1.000	275	0%	259	45.2%	12	16.6%	-	-	-	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
BCLAF1	9774	genome.wustl.edu	37	6	136597384	136597384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014739.2	-1	reviewed	p.S427P	1.000	456	0%	319	16.3%	42	0%	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136599634	136599634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014739.2	-1	reviewed	p.S129A	1.000	264	0%	192	19.3%	43	53.4%	unknown(0)	tolerated(0.1)	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136972137	136972137	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005923.3	-1	reviewed	p.V591	0.954	196	0%	174	40.2%	4	0%	-	-	-	NULL
IL20RA	53832	genome.wustl.edu	37	6	137330454	137330454	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014432.2	-1	reviewed	p.T193	0.984	202	1%	169	44.4%	25	20%	-	-	-	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind
ARID1B	57492	genome.wustl.edu	37	6	157099312	157099313	+	In_Frame_Ins	INS	-	-	CAC	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017519.2	+1	validated	p.29in_frame_insH	0.995:1.000	-	-	-	-	-	-	-	-	-	NULL
TCP1	6950	genome.wustl.edu	37	6	160205064	160205064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030752.2	-1	reviewed	p.C236R	1.000	281	0.4%	233	42.9%	300	41.3%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
MAP3K4	4216	genome.wustl.edu	37	6	161530817	161530817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005922.2	+1	reviewed	p.D1423N	1.000	152	0%	114	52.6%	15	40%	probably_damaging(1)	tolerated(0.84)	deleterious(0.500)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FRMD1	79981	genome.wustl.edu	37	6	168465693	168465693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024919.3	-1	validated	p.R169H	1.000	45	0%	20	20%	0	-	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
THBS2	7058	genome.wustl.edu	37	6	169648667	169648667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003247.2	-1	reviewed	p.V152I	0.810	64	0%	41	43.9%	12	0%	benign(0.001)	tolerated(1)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
DLL1	28514	genome.wustl.edu	37	6	170594217	170594217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005618.3	-1	reviewed	p.E347K	1.000	151	0%	81	18.5%	4	0%	possibly_damaging(0.942)	tolerated(0.17)	neutral(0.446)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
SUN1	23353	genome.wustl.edu	37	7	883206	883206	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000403868	+1	known	p.L236*	0.001	25	0%	36	47.2%	0	-	-	-	-	HMMPfam_MRP
INTS1	26173	genome.wustl.edu	37	7	1516506	1516506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080453.2	-1	validated	p.L1663I	1.000	140	0%	100	39%	100	45%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
INTS1	26173	genome.wustl.edu	37	7	1536899	1536899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080453.2	-1	validated	p.R493W	1.000	67	0%	37	48.6%	28	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HOXA7	3204	genome.wustl.edu	37	7	27195996	27195996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006896.3	-1	reviewed	p.V57I	1.000	50	0%	42	33.3%	3	33.3%	benign(0.222)	tolerated(0.28)	neutral(0.053)	NULL
HOXA11	3207	genome.wustl.edu	37	7	27224352	27224352	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005523.5	-1	reviewed	p.Q138*	1.000	56	0%	24	54.2%	11	0%	-	-	-	NULL
ELMO1	9844	genome.wustl.edu	37	7	37264564	37264564	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014800.9	-1	reviewed	p.S207	0.234	122	0%	84	42.9%	17	58.8%	-	-	-	superfamily_ARM repeat
GLI3	2737	genome.wustl.edu	37	7	42012081	42012081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000168.5	-1	reviewed	p.P653L	0.999	156	0%	150	42%	2	0%	benign(0.307)	tolerated(0.26)	neutral(0.130)	NULL
C7orf25	79020	genome.wustl.edu	37	7	42949581	42949581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001099858.1	-1	validated	p.A365T	1.000	135	0%	113	35.4%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1308
PKD1L1	168507	genome.wustl.edu	37	7	47913530	47913530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138295.2	-1	reviewed	p.R1288H	0.037	166	0.6%	109	38.5%	0	-	benign(0.032)	deleterious(0.02)	neutral(0.385)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48284224	48284224	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152701.3	+1	reviewed	p.W438*	0.998	148	0%	89	32.6%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48313429	48313429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152701.3	+1	reviewed	p.S1389N	0.005	63	0%	70	61.4%	0	-	probably_damaging(0.99)	-	-	NULL
TRIM50	135892	genome.wustl.edu	37	7	72727474	72727474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178125.2	-1	provisional	p.A303T	1.000	41	0%	32	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00589
GTF2IRD2B	389524	genome.wustl.edu	37	7	74552657	74552657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001003795.2	+1	reviewed	p.G291*	0.999	280	0%	268	10.4%	0	-	-	-	-	NULL
YWHAG	7532	genome.wustl.edu	37	7	75959031	75959031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012479.3	-1	reviewed	p.D203N	1.000	161	0%	155	42.6%	163	51.5%	possibly_damaging(0.714)	deleterious(0)	deleterious(0.703)	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
PCLO	27445	genome.wustl.edu	37	7	82580271	82580271	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033026.5	-1	validated	p.Q3211	1.000	88	0%	62	43.5%	3	33.3%	-	-	-	NULL
SEMA3E	9723	genome.wustl.edu	37	7	83025954	83025954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012431.2	-1	reviewed	p.K486N	1.000	303	0%	283	38.5%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
TAF6	6878	genome.wustl.edu	37	7	99709565	99709565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005641.2	-1	reviewed	p.S260G	1.000	101	0%	84	44%	75	38.6%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
C7orf61	402573	genome.wustl.edu	37	7	100061092	100061092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001004323.1	-1	predicted	p.G94D	0.002	51	0%	44	47.7%	0	-	probably_damaging(0.991)	tolerated(0.37)	neutral(0.463)	NULL
SRRT	51593	genome.wustl.edu	37	7	100485430	100485430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015908.5	+1	validated	p.R759H	1.000	84	0%	71	26.8%	124	8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ARS2
MUC17	140453	genome.wustl.edu	37	7	100680242	100680242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001040105.1	+1	provisional	p.P1849S	0.013	159	0%	179	49.7%	0	-	unknown(0)	-	-	NULL
VGF	7425	genome.wustl.edu	37	7	100807026	100807028	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003378.3	-1	reviewed	p.E366in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101840429	101840429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_181552.2	+1	reviewed	p.G580*	1.000	77	0%	75	41.3%	5	20%	-	-	-	HMMPfam_CUT,superfamily_lambda repressor-like DNA-binding domains
PUS7	54517	genome.wustl.edu	37	7	105142928	105142929	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_019042.3	-1	validated	p.E223fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_PsdUridine_synth_cat_dom
ZC3HAV1	56829	genome.wustl.edu	37	7	138732367	138732367	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020119.3	-1	reviewed	p.T894	0.000	143	0%	111	36.9%	3	0%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
MGAM	8972	genome.wustl.edu	37	7	141736710	141736710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004668.2	+1	reviewed	p.Y722H	1.000	184	0%	144	34.7%	0	-	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	HMMPfam_Glyco_hydro_31
TRBV7-8	28590	genome.wustl.edu	37	7	142099671	142099671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000390359	-1	known	p.P44Q	0.236	110	0%	89	47.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
NUB1	51667	genome.wustl.edu	37	7	151065946	151065946	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000460712	+1	known	p.R43Q	0.997	74	0%	66	36.4%	20	45%	-	-	-	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165
RBM33	155435	genome.wustl.edu	37	7	155503968	155503968	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000392761	+1	known	p.R112H	0.997	66	0%	55	49.1%	2	0%	-	-	-	NULL
ERICH1	157697	genome.wustl.edu	37	8	623569	623569	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_207332.1	-1	provisional	p.A261	0.099	183	0%	196	45.9%	18	27.7%	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	2820778	2820778	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033225.5	-1	validated	p.R3141	0.001	66	0%	60	15%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
XKR5	389610	genome.wustl.edu	37	8	6669183	6669183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000409172	-1	known	p.G532*	0.001	388	0%	295	37.3%	0	-	-	-	-	NULL
TNKS	8658	genome.wustl.edu	37	8	9627721	9627721	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003747.2	+1	validated	p.P1282	0.460	73	0%	59	39%	14	28.5%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
ZNF705F	790969	genome.wustl.edu	37	8	12216470	12216470	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000400078	+1	known	p.L157	0.000	149	0%	113	40.7%	0	-	-	-	-	superfamily_SSF57667
FGL1	2267	genome.wustl.edu	37	8	17739575	17739575	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004467.3	-1	reviewed	p.E59	0.739	180	0%	147	39.5%	0	-	-	-	-	NULL
LPL	4023	genome.wustl.edu	37	8	19813517	19813517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000311322	+1	known	p.G314D	1.000	83	1.2%	68	51.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
SLC18A1	6570	genome.wustl.edu	37	8	20036741	20036741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001135691.2	-1	validated	p.Q127*	0.992	291	0.3%	210	39.5%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIAA1967	57805	genome.wustl.edu	37	8	22472508	22472508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021174.4	+1	validated	p.T400I	1.000	64	0%	35	28.6%	64	43.7%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
TNFRSF10A	8797	genome.wustl.edu	37	8	23060253	23060253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003844.3	-1	reviewed	p.P142H	0.000	179	0%	137	42.3%	5	20%	benign(0.004)	tolerated(0.11)	neutral(0.272)	superfamily_TNF receptor-like
DOCK5	80005	genome.wustl.edu	37	8	25166367	25166367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024940.6	+1	validated	p.I373T	0.960	69	0%	79	46.8%	0	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
KIF13B	23303	genome.wustl.edu	37	8	28967487	28967487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015254.3	-1	validated	p.L1344P	0.965	116	0%	96	38.5%	8	50%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
GTF2E2	2961	genome.wustl.edu	37	8	30469883	30469883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002095.4	-1	validated	p.R161Q	1.000	243	0%	188	41%	62	38.7%	benign(0.056)	tolerated(0.15)	neutral(0.244)	NULL
TEX15	56154	genome.wustl.edu	37	8	30702261	30702261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_031271.3	-1	validated	p.N1425D	0.061	135	0%	134	44.8%	1	100%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
TTI2	80185	genome.wustl.edu	37	8	33369718	33369718	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001102401.1	-1	validated	p.A138	0.000	94	0%	81	40.7%	16	43.7%	-	-	-	NULL
DDHD2	23259	genome.wustl.edu	37	8	38111155	38111155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015214.2	+1	validated	p.R658H	1.000	265	0%	228	43%	26	38.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DDHD
ADAM32	203102	genome.wustl.edu	37	8	39044508	39044508	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_145004.5	+1	validated	p.D332	0.995	160	0%	151	38.4%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
CHRNA6	8973	genome.wustl.edu	37	8	42612110	42612110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004198.2	-1	provisional	p.A112V	0.940	189	0%	151	42.4%	0	-	benign(0.055)	deleterious(0)	neutral(0.448)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CRISPLD1	83690	genome.wustl.edu	37	8	75941636	75941636	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_031461.4	+1	validated	p.C445	1.000	188	0%	133	43.6%	32	40.6%	-	-	-	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
ZFHX4	79776	genome.wustl.edu	37	8	77617719	77617719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024721.4	+1	validated	p.P466A	0.997	86	0%	80	33.8%	0	-	benign(0.253)	-	-	NULL
MATN2	4147	genome.wustl.edu	37	8	98943526	98943526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002380.3	+1	reviewed	p.R163Q	0.997	64	0%	49	36.7%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
UBR5	51366	genome.wustl.edu	37	8	103301711	103301711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015902.4	-1	reviewed	p.Q1561H	1.000	257	0%	212	42.9%	11	27.2%	possibly_damaging(0.855)	tolerated(0.17)	neutral(0.389)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125076701	125076701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001039112.2	+1	validated	p.D1148N	0.297	83	0%	78	43.6%	0	-	benign(0.344)	tolerated(0.46)	neutral(0.120)	NULL
TG	7038	genome.wustl.edu	37	8	133953647	133953647	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003235.4	+1	reviewed	p.Q1698P	0.990	217	0%	155	51%	0	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142228829	142228829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001080431.1	-1	provisional	p.R253C	1.000	40	0%	23	39.1%	10	30%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HEATR7A	727957	genome.wustl.edu	37	8	145235357	145235357	+	Missense_Mutation	SNP	G	G	A	rs185394696	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032450.2	+1	provisional	p.V165I	1.000	117	0%	83	34.9%	26	30.7%	benign(0)	tolerated(1)	-	superfamily_ARM repeat
CPSF1	29894	genome.wustl.edu	37	8	145620691	145620691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_013291.2	-1	validated	p.R1019C	1.000	46	0%	43	48.8%	87	51.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C8orf82	414919	genome.wustl.edu	37	8	145752978	145752978	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001001795.1	-1	predicted	p.G133	0.962	20	0%	13	53.8%	30	53.3%	-	-	-	NULL
KANK1	23189	genome.wustl.edu	37	9	744515	744515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015158.2	+1	reviewed	p.A1308T	1.000	118	0%	124	12.1%	29	6.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZDHHC21	340481	genome.wustl.edu	37	9	14674267	14674267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178566.4	-1	validated	p.W24*	1.000	100	0%	61	39.3%	4	25%	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32635480	32635480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_153809.2	-1	provisional	p.G33D	0.986	114	0%	118	10.2%	0	-	possibly_damaging(0.942)	tolerated(0.23)	neutral(0.428)	HMMPfam_TBP-binding,superfamily_TAF_II_230
NOL6	65083	genome.wustl.edu	37	9	33466348	33466348	+	Missense_Mutation	SNP	G	G	C	rs35135082	byCluster;byFrequency	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022917.4	-1	reviewed	p.R723G	0.971	121	0%	104	36.5%	10	50%	possibly_damaging(0.669)	tolerated(0.38)	neutral(0.255)	HMMPfam_Nrap
TLN1	7094	genome.wustl.edu	37	9	35706500	35706500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006289.3	-1	reviewed	p.I1713V	1.000	90	0%	54	55.6%	85	38.8%	benign(0.002)	tolerated(0.38)	neutral(0.018)	NULL
C9orf128	392307	genome.wustl.edu	37	9	35818890	35818890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000423537	-1	known	p.R390C	0.005	101	0%	80	50%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PCSK5	5125	genome.wustl.edu	37	9	78686741	78686741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006200.3	+1	reviewed	p.P274L	1.000	74	0%	53	41.5%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PCSK5	5125	genome.wustl.edu	37	9	78710921	78710921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006200.3	+1	reviewed	p.S337I	1.000	196	0%	173	46.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
ZCCHC6	79670	genome.wustl.edu	37	9	88916415	88916415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024617.3	-1	validated	p.T1399I	0.999	452	0.2%	404	42.1%	16	43.7%	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	superfamily_Retrovirus zinc finger-like domains
CTSL1	1514	genome.wustl.edu	37	9	90343687	90343687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001912.4	+1	reviewed	p.G195D	1.000	158	0%	147	53.1%	56	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
LOC645937	645937	genome.wustl.edu	37	9	90559212	90559212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_928905.4	-1	model	p.Q179*	1.000	43	0%	29	44.8%	0	-	-	-	-	NULL
C9orf84	158401	genome.wustl.edu	37	9	114543278	114543278	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000374283	-1	known	p.P63	0.000	129	0%	113	42.5%	0	-	-	-	-	NULL
KIF12	113220	genome.wustl.edu	37	9	116857526	116857526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138424.1	-1	provisional	p.D190N	0.983	80	0%	44	11.4%	0	-	possibly_damaging(0.912)	deleterious(0.03)	deleterious(0.728)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
TNC	3371	genome.wustl.edu	37	9	117786399	117786399	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002160.2	-1	validated	p.Y2116*	1.000	177	0%	136	38.2%	76	5.2%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
GPR144	347088	genome.wustl.edu	37	9	127214961	127214961	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000334810	+1	known	p.V99	0.938	58	1.7%	36	44.4%	0	-	-	-	-	NULL
GPR144	347088	genome.wustl.edu	37	9	127228572	127228572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000439837	+1	known	p.Y602H	0.086	80	1.3%	66	45.5%	0	-	benign(0.006)	-	-	NULL
TBC1D13	54662	genome.wustl.edu	37	9	131568287	131568287	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018201.3	+1	validated	p.C356	0.573	106	0%	84	50%	27	48.1%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
UCK1	83549	genome.wustl.edu	37	9	134400586	134400586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001135954.1	-1	validated	p.A194T	1.000	71	0%	50	42%	44	47.7%	benign(0.164)	deleterious(0.04)	neutral(0.364)	NULL
DBH	1621	genome.wustl.edu	37	9	136501571	136501571	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000787.3	+1	reviewed	p.V26	1.000	35	0%	21	19%	0	-	-	-	-	NULL
SEC16A	9919	genome.wustl.edu	37	9	139371472	139371472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014866.1	-1	validated	p.A199V	0.029	42	0%	24	33.3%	10	20%	unknown(0)	deleterious(0)	-	NULL
FAM69B	138311	genome.wustl.edu	37	9	139617657	139617657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152421.3	+1	validated	p.A243T	0.002	39	0%	19	63.2%	37	40.5%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
NDOR1	27158	genome.wustl.edu	37	9	140110586	140110586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001144026.1	+1	reviewed	p.G541E	0.431	74	0%	47	48.9%	22	50%	benign(0.201)	deleterious(0.04)	neutral(0.368)	HMMPfam_NAD_binding_1,superfamily_SSF52343
CUBN	8029	genome.wustl.edu	37	10	17130263	17130263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001081.3	-1	reviewed	p.C616Y	1.000	140	0%	124	40.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PIP4K2A	5305	genome.wustl.edu	37	10	22830970	22830970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005028.4	-1	reviewed	p.A267T	1.000	107	0%	102	18.6%	27	25.9%	benign(0.426)	tolerated(0.74)	neutral(0.140)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ARHGAP21	57584	genome.wustl.edu	37	10	24908692	24908692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020824.3	-1	validated	p.Q711R	0.001	134	0%	107	48.6%	7	42.8%	benign(0.045)	tolerated(0.44)	neutral(0.015)	NULL
NRP1	8829	genome.wustl.edu	37	10	33552749	33552749	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003873.5	-1	validated	p.P161	0.016	185	0.5%	156	47.4%	14	28.5%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
RASSF4	83937	genome.wustl.edu	37	10	45479482	45479482	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032023.3	+1	reviewed	p.S98	0.000	51	0%	39	43.6%	34	41.1%	-	-	-	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72520507	72520507	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_139155.2	+1	reviewed	p.G1193	0.999	85	0%	66	37.9%	5	40%	-	-	-	NULL
ANXA11	311	genome.wustl.edu	37	10	81923291	81923292	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001157.2	-1	reviewed	p.Q343fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Annexin
SH2D4B	387694	genome.wustl.edu	37	10	82363461	82363461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_207372.2	+1	validated	p.R257Q	0.048	27	0%	21	33.3%	0	-	benign(0.002)	tolerated(0.58)	neutral(0.005)	NULL
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000371953	+1	known	p.R233*	0.984	175	0.6%	120	45.8%	97	3%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
NOC3L	64318	genome.wustl.edu	37	10	96099617	96099617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022451.9	-1	provisional	p.R614H	1.000	90	0%	89	36%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBF
ALDH18A1	5832	genome.wustl.edu	37	10	97402848	97402848	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002860.3	-1	reviewed	p.K68	1.000	76	0%	47	44.7%	84	33.3%	-	-	-	NULL
C10orf28	27291	genome.wustl.edu	37	10	99968621	99968621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014472.4	+1	validated	p.M250I	0.000	102	0%	101	35.6%	4	50%	benign(0.258)	tolerated(0.12)	neutral(0.288)	NULL
DNMBP	23268	genome.wustl.edu	37	10	101715865	101715865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015221.2	-1	validated	p.Y456H	0.017	87	0%	74	43.2%	0	-	possibly_damaging(0.92)	tolerated(0.33)	neutral(0.395)	NULL
HIF1AN	55662	genome.wustl.edu	37	10	102305723	102305723	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017902.2	+1	validated	p.Y249	0.983	140	0%	103	51.5%	26	42.3%	-	-	-	HMMSmart_JmjC,superfamily_SSF51197
TRIM8	81603	genome.wustl.edu	37	10	104416576	104416576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030912.2	+1	validated	p.A374V	1.000	47	0%	29	41.4%	109	35.7%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
INA	9118	genome.wustl.edu	37	10	105037958	105037958	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032727.3	+1	reviewed	p.R330	0.991	14	0%	17	23.5%	4	0%	-	-	-	HMMPfam_Filament
WDR96	80217	genome.wustl.edu	37	10	105953648	105953648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_025145.5	-1	provisional	p.S473L	0.943	41	0%	32	25%	3	33.3%	probably_damaging(0.999)	tolerated(0.65)	deleterious(0.493)	superfamily_WD40 repeat-like
AFAP1L2	84632	genome.wustl.edu	37	10	116075401	116075401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001001936.1	-1	validated	p.R177H	1.000	26	0%	20	40%	9	33.3%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ENSG00000222588	0	genome.wustl.edu	37	10	120820515	120820515	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000410656	-1	novel	NULL	1.000	44	2.3%	33	45.5%	0	-	-	-	-	-
LRRC27	80313	genome.wustl.edu	37	10	134178970	134178970	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001143757.1	+1	validated	p.H444	0.072	126	0%	88	39.8%	10	30%	-	-	-	NULL
TSPAN4	7106	genome.wustl.edu	37	11	865991	865991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001025234.1	+1	reviewed	p.A213V	0.389	60	0%	54	48.1%	57	35%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Tetraspannin
CHID1	66005	genome.wustl.edu	37	11	884142	884142	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001142676.1	-1	validated	p.H268	0.932	100	0%	69	49.3%	179	49.7%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
TNNI2	7136	genome.wustl.edu	37	11	1861771	1861771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003282.3	+1	reviewed	p.Q24R	1.000	16	0%	13	38.5%	1	0%	possibly_damaging(0.556)	tolerated(0.14)	neutral(0.439)	HMMPfam_Troponin
CD81	975	genome.wustl.edu	37	11	2417170	2417170	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004356.3	+1	reviewed	p.S177	0.001	62	0%	43	58.1%	1223	40.1%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
NUP98	4928	genome.wustl.edu	37	11	3707378	3707378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016320.4	-1	reviewed	p.D1501Y	1.000	112	0%	85	16.5%	39	20.5%	benign(0.012)	deleterious(0.02)	neutral(0.384)	NULL
PPFIBP2	8495	genome.wustl.edu	37	11	7586924	7586925	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003621.2	+1	validated	p.R70fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32955457	32955457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001076786.1	+1	provisional	p.R756C	0.978	103	0%	74	43.2%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAT	847	genome.wustl.edu	37	11	34482829	34482829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001752.3	+1	reviewed	p.R363H	1.000	174	0%	149	41.6%	72	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Catalase_N,HMMPfam_Catalase
OR8H3	390152	genome.wustl.edu	37	11	55890572	55890572	+	Missense_Mutation	SNP	G	G	A	rs186768016	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001005201.1	+1	provisional	p.V242I	0.101	277	0%	250	41.2%	0	-	benign(0.005)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000251217	0	genome.wustl.edu	37	11	60785037	60785038	+	RNA	INS	-	-	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000505761	-1	known	NULL	0.006:0.003	-	-	-	-	-	-	-	-	-	-
EML3	256364	genome.wustl.edu	37	11	62374518	62374518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000394776	-1	known	p.H467Y	1.000	119	0%	96	33.3%	32	31.2%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
INTS5	80789	genome.wustl.edu	37	11	62416021	62416021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030628.1	-1	provisional	p.R511W	0.947	46	0%	31	41.9%	30	40%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63978253	63978253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178443.2	+1	reviewed	p.R111C	0.997	43	0%	43	48.8%	4	0%	benign(0.071)	tolerated(0.05)	neutral(0.350)	HMMSmart_SM00295
OVOL1	5017	genome.wustl.edu	37	11	65562182	65562182	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004561.2	+1	reviewed	p.H164	0.883	65	0%	33	42.4%	12	41.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PACS1	55690	genome.wustl.edu	37	11	65961044	65961044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018026.2	+1	reviewed	p.Q148H	1.000	142	0%	120	40.8%	29	34.4%	benign(0.293)	tolerated(0.06)	neutral(0.413)	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66466238	66466238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006946.2	-1	reviewed	p.E1296K	1.000	140	0%	106	33%	43	58.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ADRBK1	156	genome.wustl.edu	37	11	67052853	67052853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001619.3	+1	reviewed	p.P668S	0.998	18	0%	14	42.9%	97	44.3%	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_SSF50729
PITPNM1	9600	genome.wustl.edu	37	11	67266086	67266086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004910.2	-1	validated	p.A489T	1.000	65	0%	42	45.2%	78	42.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SUV420H1	51111	genome.wustl.edu	37	11	67925554	67925554	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017635.3	-1	reviewed	p.N753	0.225	291	0%	288	37.5%	16	18.7%	-	-	-	NULL
CCND1	595	genome.wustl.edu	37	11	69466031	69466032	+	In_Frame_Ins	INS	-	-	GCG	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_053056.2	+1	reviewed	p.292in_frame_insR	1.000:0.995	-	-	-	-	-	-	-	-	-	NULL
KRTAP5-8	57830	genome.wustl.edu	37	11	71249142	71249142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021046.2	+1	validated	p.C14Y	1.000	94	0%	102	60.8%	0	-	unknown(0)	deleterious(0)	-	NULL
OR2AT4	341152	genome.wustl.edu	37	11	74800638	74800638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001005285.1	-1	provisional	p.L41I	0.708	184	0%	174	43.1%	0	-	possibly_damaging(0.489)	tolerated(0.22)	neutral(0.205)	superfamily_Family A G protein-coupled receptor-like
MYO7A	4647	genome.wustl.edu	37	11	76869440	76869440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000260.3	+1	reviewed	p.A323T	1.000	57	0%	30	40%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
RSF1	51773	genome.wustl.edu	37	11	77387915	77387915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016578.3	-1	validated	p.R1088H	1.000	271	0%	212	46.2%	18	44.4%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
RSF1	51773	genome.wustl.edu	37	11	77436696	77436696	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000440064	-1	known	p.L116S	0.663	269	0%	267	40.1%	8	62.5%	-	-	-	NULL
KCTD14	65987	genome.wustl.edu	37	11	77727907	77727907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_023930.3	-1	validated	p.S167N	0.000	107	0.9%	101	44.6%	25	36%	benign(0.004)	tolerated(0.33)	neutral(0.024)	NULL
LOC100129932	100129932	genome.wustl.edu	37	11	93862255	93862259	+	Frame_Shift_Del	DEL	CCCGC	CCCGC	-	rs139739627	byCluster;by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CCCGC	CCCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_001725210.2	-1	model	p.A240fs	0.001:0.001:0.007:0.071:0.072	-	-	-	-	-	-	-	-	-	NULL
MRE11A	4361	genome.wustl.edu	37	11	94179033	94179033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005591.3	-1	reviewed	p.R604C	0.050	115	0%	103	35.9%	9	66.6%	possibly_damaging(0.947)	deleterious(0.02)	deleterious(0.774)	NULL
DIXDC1	85458	genome.wustl.edu	37	11	111844945	111844945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000440460	+1	known	p.R172Q	1.000	103	0%	72	48.6%	0	-	benign(0.025)	tolerated(0.23)	neutral(0.043)	NULL
IL10RA	3587	genome.wustl.edu	37	11	117870000	117870000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001558.3	+1	reviewed	p.G461C	0.018	71	0%	91	49.5%	3	0%	probably_damaging(0.975)	deleterious(0.05)	deleterious(0.762)	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118518706	118518706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001144758.1	+1	validated	p.V1190I	1.000	189	0%	183	43.2%	31	35.4%	benign(0.406)	tolerated(0.39)	neutral(0.147)	NULL
RPS25	6230	genome.wustl.edu	37	11	118886581	118886581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001028.2	-1	reviewed	p.A118T	1.000	287	0%	264	43.2%	862	41.9%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PDZD3	79849	genome.wustl.edu	37	11	119058022	119058022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024791.3	+1	validated	p.T125I	0.035	31	0%	41	63.4%	0	-	benign(0.012)	tolerated(0.37)	neutral(0.019)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
TECTA	7007	genome.wustl.edu	37	11	121008359	121008359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005422.2	+1	reviewed	p.C1057	1.000	127	0%	77	49.4%	0	-	-	-	-	NULL
ETS1	2113	genome.wustl.edu	37	11	128359285	128359285	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001143820.1	-1	validated	p.N145	0.061	146	0%	123	39%	16	25%	-	-	-	HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology
ADAMTS15	170689	genome.wustl.edu	37	11	130343148	130343148	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_139055.2	+1	reviewed	p.T762fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ADAM_spacer1
CD163L1	283316	genome.wustl.edu	37	12	7556285	7556285	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_174941.4	-1	reviewed	p.G418	0.001	180	0%	121	43.8%	0	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
LMO3	55885	genome.wustl.edu	37	12	16753659	16753659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001001395.1	-1	validated	p.R46C	1.000	132	0%	109	42.2%	2	50%	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ABCC9	10060	genome.wustl.edu	37	12	22025661	22025661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005691.2	-1	reviewed	p.Q699L	1.000	134	0%	100	50%	0	-	possibly_damaging(0.805)	tolerated(0.07)	deleterious(0.622)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033360.2	-1	reviewed	p.G13D	1.000	225	0%	150	40%	17	41.1%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TM7SF3	51768	genome.wustl.edu	37	12	27127127	27127127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016551.2	-1	validated	p.A495D	1.000	165	0%	166	36.7%	33	39.3%	possibly_damaging(0.948)	deleterious(0.05)	deleterious(0.736)	NULL
BICD1	636	genome.wustl.edu	37	12	32490521	32490521	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001714.2	+1	reviewed	p.R781*	1.000	113	0%	71	11.3%	8	25%	-	-	-	HMMPfam_BicD
SLC38A1	81539	genome.wustl.edu	37	12	46622974	46622974	+	Silent	SNP	G	G	A	rs138484624	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001077484.1	-1	validated	p.L92	0.400	85	0%	77	44.2%	21	47.6%	-	-	-	HMMPfam_Aa_trans
VDR	7421	genome.wustl.edu	37	12	48258886	48258886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000376.2	-1	reviewed	p.R74H	1.000	134	0%	94	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
KANSL2	54934	genome.wustl.edu	37	12	49054257	49054257	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017822.3	-1	validated	p.P373	0.968	118	0%	87	32.2%	25	28%	-	-	-	NULL
POU6F1	5463	genome.wustl.edu	37	12	51583975	51583975	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NR_026893.1	-1	validated	NULL	0.029	36	0%	34	20.6%	3	33.3%	-	-	-	-
KRT5	3852	genome.wustl.edu	37	12	52911411	52911411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000424.3	-1	reviewed	p.R352H	1.000	209	0.5%	198	46%	224	73.6%	possibly_damaging(0.925)	deleterious(0.05)	deleterious(0.719)	HMMPfam_Filament
ESPL1	9700	genome.wustl.edu	37	12	53683909	53683909	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012291.4	+1	validated	p.P1718	0.996	169	0%	106	33%	17	47%	-	-	-	HMMPfam_Peptidase_C50
TARBP2	6895	genome.wustl.edu	37	12	53898551	53898551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_134323.1	+1	reviewed	p.R189C	1.000	152	0%	125	42.4%	25	40%	benign(0.358)	tolerated(0.14)	neutral(0.363)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
ITGA5	3678	genome.wustl.edu	37	12	54793460	54793460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002205.2	-1	reviewed	p.H937R	1.000	93	1.1%	74	54.1%	48	0%	benign(0.002)	tolerated(1)	-	superfamily_SSF69179
ZC3H10	84872	genome.wustl.edu	37	12	56514988	56514988	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032786.1	+1	provisional	p.C214	1.000	47	0%	42	50%	6	66.6%	-	-	-	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57396573	57396573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014830.1	-1	provisional	p.P710L	0.347	89	0%	84	44%	4	25%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444255	75444255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_139137.2	-1	reviewed	p.K510N	1.000	216	0%	147	50.3%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
RASSF9	9182	genome.wustl.edu	37	12	86198606	86198606	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005447.3	-1	reviewed	p.I394	0.000	175	0%	151	33.8%	4	75%	-	-	-	NULL
APPL2	55198	genome.wustl.edu	37	12	105569825	105569825	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018171.3	-1	validated	p.I616	1.000	195	0%	157	49%	23	34.7%	-	-	-	superfamily_SSF50729
FICD	11153	genome.wustl.edu	37	12	108912635	108912635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007076.2	+1	validated	p.P254S	1.000	71	1.4%	45	46.7%	4	25%	benign(0.004)	tolerated(0.66)	neutral(0.003)	NULL
CAMKK2	10645	genome.wustl.edu	37	12	121712185	121712185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006549.3	-1	reviewed	p.M49V	1.000	21	0%	12	33.3%	8	37.5%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
SETD1B	23067	genome.wustl.edu	37	12	122252457	122252457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015048.1	+1	validated	p.T779M	0.997	14	0%	12	41.7%	4	75%	unknown(0)	-	-	NULL
DHX37	57647	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032656.2	-1	reviewed	p.E168in_frame_del	0.904:0.904:0.905	-	-	-	-	-	-	-	-	-	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130919413	130919413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015347.4	-1	validated	p.S690G	1.000	43	0%	27	40.7%	1	0%	benign(0.122)	deleterious(0.02)	neutral(0.393)	NULL
MMP17	4326	genome.wustl.edu	37	12	132329684	132329684	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016155.4	+1	reviewed	p.H330	0.887	129	0%	84	35.7%	2	50%	-	-	-	superfamily_Hemopexin-like domain
EP400	57634	genome.wustl.edu	37	12	132446086	132446086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015409.3	+1	validated	p.A308T	0.000	60	0%	58	46.6%	6	50%	unknown(0)	-	-	NULL
GOLGA3	2802	genome.wustl.edu	37	12	133365651	133365651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005895.3	-1	reviewed	p.A925S	0.014	48	0%	32	21.9%	25	12%	benign(0.167)	tolerated(0.13)	neutral(0.268)	superfamily_Prefoldin
XPO4	64328	genome.wustl.edu	37	13	21364662	21364662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022459.4	-1	validated	p.A952V	1.000	161	0%	129	37.2%	12	25%	benign(0.173)	deleterious(0.04)	neutral(0.365)	superfamily_ARM-type_fold
CENPJ	55835	genome.wustl.edu	37	13	25484153	25484154	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018451.3	-1	reviewed	p.R213fs	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32929040	32929040	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000059.3	+1	reviewed	p.T2350	0.009	199	0%	159	26.4%	3	0%	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	36129231	36129231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015678.4	+1	validated	p.T2305N	1.000	170	0%	136	39.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
ZC3H13	23091	genome.wustl.edu	37	13	46549808	46549809	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015070.3	-1	validated	p.R693fs	0.991:0.444	-	-	-	-	-	-	-	-	-	NULL
PROZ	8858	genome.wustl.edu	37	13	113826047	113826047	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003891.1	+1	provisional	p.G277	0.024	40	0%	36	38.9%	1	100%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PCID2	55795	genome.wustl.edu	37	13	113832554	113832554	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001127202.1	-1	validated	p.V386	1.000	221	0%	184	41.8%	93	40.8%	-	-	-	HMMPfam_PCI
OR4Q3	441669	genome.wustl.edu	37	14	20216186	20216186	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_172194.1	+1	provisional	p.V200	0.949	495	0%	389	27.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SUPT16H	11198	genome.wustl.edu	37	14	21820957	21820957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007192.3	-1	reviewed	p.E1007K	1.000	181	0%	155	35.5%	129	50.3%	benign(0.224)	tolerated(0.23)	neutral(0.064)	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21829029	21829029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007192.3	-1	reviewed	p.G678C	1.000	173	0%	165	46.7%	71	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPT16
ENSG00000246609	0	genome.wustl.edu	37	14	24036171	24036171	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000502153	+1	known	NULL	0.000	17	0%	13	46.2%	3	0%	-	-	-	-
BAZ1A	11177	genome.wustl.edu	37	14	35233936	35233936	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_013448.2	-1	validated	p.D1251	1.000	397	0%	383	25.6%	38	28.9%	-	-	-	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35264955	35264955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_013448.2	-1	validated	p.R382H	1.000	280	0%	247	33.2%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35270392	35270392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_013448.2	-1	validated	p.N290S	0.000	173	0%	185	33.5%	7	28.5%	benign(0)	tolerated(1)	-	NULL
C14orf183	196913	genome.wustl.edu	37	14	50559312	50559312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001014830.1	-1	provisional	p.R17H	0.004	162	0%	137	33.6%	0	-	unknown(0)	-	-	NULL
STYX	6815	genome.wustl.edu	37	14	53223315	53223315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001130701.1	+1	validated	p.R97C	1.000	79	0%	80	48.7%	14	42.8%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
ARID4A	5926	genome.wustl.edu	37	14	58768334	58768334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002892.3	+1	reviewed	p.D15N	1.000	137	0%	121	41.3%	2	50%	benign(0.188)	deleterious(0)	neutral(0.462)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	59006831	59006831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014749.3	+1	validated	p.P1415L	0.010	197	0.5%	161	40.4%	14	28.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SYT16	83851	genome.wustl.edu	37	14	62547848	62547848	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_031914.2	+1	validated	p.A430	0.703	72	0%	49	40.8%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PCNX	22990	genome.wustl.edu	37	14	71556058	71556058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014982.2	+1	validated	p.Q1863R	1.000	238	0%	200	42.5%	8	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Pecanex_C
C14orf43	91748	genome.wustl.edu	37	14	74188000	74188000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001043318.1	-1	validated	p.S979	1.000	126	0%	97	41.2%	25	32%	-	-	-	NULL
COQ6	51004	genome.wustl.edu	37	14	74417121	74417121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_182476.1	+1	validated	p.G29A	0.006	37	0%	31	25.8%	19	31.5%	benign(0.026)	tolerated(0.24)	neutral(0.038)	NULL
ANGEL1	23357	genome.wustl.edu	37	14	77270183	77270183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015305.3	-1	validated	p.L485M	1.000	58	0%	66	36.4%	17	35.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
NRXN3	9369	genome.wustl.edu	37	14	80328223	80328223	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004796.4	+1	reviewed	p.N1034	1.000	48	0%	86	44.2%	8	62.5%	-	-	-	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93264239	93264239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005113.2	+1	reviewed	p.S153P	0.928	70	0%	63	44.4%	27	40.7%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
ASB2	51676	genome.wustl.edu	37	14	94405707	94405707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016150.3	-1	reviewed	p.R407H	0.997	23	0%	16	25%	8	25%	possibly_damaging(0.836)	deleterious(0.04)	deleterious(0.668)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MIR134	406924	genome.wustl.edu	37	14	101521086	101521086	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000385258	+1	known	NULL	1.000	127	0%	93	37.6%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102506035	102506035	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001376.4	+1	reviewed	p.L3886	1.000	110	0%	71	42.3%	134	41%	-	-	-	NULL
ZNF839	55778	genome.wustl.edu	37	14	102807872	102807872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018335.3	+1	validated	p.R714G	0.000	110	0%	97	41.2%	13	53.8%	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102965368	102965372	+	Frame_Shift_Del	DEL	CACCA	CACCA	-	rs10531276	byCluster;by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CACCA	CACCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000380088	+1	known	p.T672fs	0.001:0.000:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105417663	105417663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138420.2	-1	validated	p.D1375E	0.000	132	0%	140	42.1%	2	0%	benign(0.03)	tolerated(0.18)	neutral(0.058)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105420707	105420707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138420.2	-1	validated	p.P361S	0.000	80	0%	75	42.7%	6	100%	benign(0.014)	tolerated(0.58)	neutral(0.005)	NULL
TMEM121	80757	genome.wustl.edu	37	14	105995686	105995686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_025268.2	+1	provisional	p.R172H	0.983	13	0%	22	59.1%	5	20%	possibly_damaging(0.808)	deleterious(0.02)	deleterious(0.687)	NULL
IGHV3-53	28420	genome.wustl.edu	37	14	107048957	107048957	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000390627	-1	known	p.V21	0.032	164	0%	180	43.3%	10	0%	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000215407	0	genome.wustl.edu	37	15	20450257	20450257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000400226	-1	known	p.Q355H	0.999	225	0%	205	11.7%	4	0%	-	-	-	HMMPfam_BRO1
OR4M2	390538	genome.wustl.edu	37	15	22369463	22369463	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001004719.2	+1	validated	p.V296	0.995	357	0%	251	19.9%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
C15orf2	23742	genome.wustl.edu	37	15	24922980	24922980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018958.2	+1	reviewed	p.P656S	0.001	225	0%	212	47.2%	0	-	benign(0)	-	-	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28901025	28901025	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000383034	+1	known	p.I92	0.964	92	0%	97	43.3%	4	50%	-	-	-	NULL
FSIP1	161835	genome.wustl.edu	37	15	40068661	40068661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152597.4	-1	validated	p.P22L	0.723	312	0%	331	42.6%	0	-	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41827750	41827750	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015540.2	-1	reviewed	p.P167	0.000	160	0%	120	45.8%	16	62.5%	-	-	-	NULL
ADAL	161823	genome.wustl.edu	37	15	43632501	43632501	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001012969.2	+1	validated	p.G98	0.999	129	0%	100	40%	1	100%	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
ZSCAN29	146050	genome.wustl.edu	37	15	43653792	43653792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152455.3	-1	validated	p.C680R	1.000	203	0%	202	45%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRTG	283659	genome.wustl.edu	37	15	55965613	55965613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173814.4	-1	validated	p.S603L	0.998	112	0%	85	51.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,superfamily_FN_III-like
ALDH1A2	8854	genome.wustl.edu	37	15	58357768	58357768	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003888.2	-1	reviewed	p.P27	1.000	59	0%	33	30.3%	2	0%	-	-	-	superfamily_ALDH-like
MYO1E	4643	genome.wustl.edu	37	15	59553643	59553643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004998.2	-1	validated	p.K71N	1.000	165	0%	144	43.1%	32	21.8%	probably_damaging(0.972)	tolerated(0.15)	deleterious(0.655)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DPP8	54878	genome.wustl.edu	37	15	65782558	65782558	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_197960.2	-1	reviewed	p.S281	1.000	240	0%	264	45.1%	5	40%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
THSD4	79875	genome.wustl.edu	37	15	72050367	72050367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024817.2	+1	provisional	p.G848R	1.000	100	0%	95	38.9%	2	50%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
HCN4	10021	genome.wustl.edu	37	15	73616475	73616475	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005477.2	-1	reviewed	p.R700*	1.000	53	0%	29	37.9%	0	-	-	-	-	HMMSmart_cNMP,superfamily_cNMP_binding
PML	5371	genome.wustl.edu	37	15	74327546	74327560	+	In_Frame_Del	DEL	TCCTCGCCAGCCCAC	TCCTCGCCAGCCCAC	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	TCCTCGCCAGCCCAC	TCCTCGCCAGCCCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033239.2	+1	reviewed	p.AHSSP585in_frame_del	0.004:0.012:0.015:0.009:0.001:0.000:0.000:0.001:0.001:0.000:0.001:0.002:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ISLR2	57611	genome.wustl.edu	37	15	74425467	74425467	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001130136.1	+1	validated	p.A124	0.793	37	0%	41	39%	18	44.4%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
NEIL1	79661	genome.wustl.edu	37	15	75641589	75641589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024608.2	+1	validated	p.V115M	1.000	22	0%	16	37.5%	2	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Fapy_DNA_glyco,superfamily_N-terminal domain of MutM-like DNA repair proteins
MAN2C1	4123	genome.wustl.edu	37	15	75652021	75652021	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006715.2	-1	validated	p.L630	0.995	109	0%	50	36%	37	29.7%	-	-	-	HMMPfam_Glyco_hydro_38C
SIN3A	25942	genome.wustl.edu	37	15	75693144	75693144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001145357.1	-1	reviewed	p.G555V	1.000	172	0%	166	47%	16	56.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HDAC_interact,HMMSmart_HDAC_interact
SIN3A	25942	genome.wustl.edu	37	15	75705360	75705360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001145357.1	-1	reviewed	p.R167H	1.000	228	0%	227	40.1%	23	56.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAH,superfamily_PAH
TBC1D2B	23102	genome.wustl.edu	37	15	78305454	78305454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144572.1	-1	validated	p.A661T	0.001	232	0.4%	207	46.9%	3	33.3%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ALPK3	57538	genome.wustl.edu	37	15	85370742	85370742	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020778.4	+1	validated	p.Q272	1.000	95	0%	69	55.1%	3	0%	-	-	-	superfamily_Immunoglobulin
FES	2242	genome.wustl.edu	37	15	91430485	91430485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002005.3	+1	reviewed	p.R185C	1.000	33	0%	26	57.7%	22	40.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LRRC28	123355	genome.wustl.edu	37	15	99926276	99926276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144598.2	+1	provisional	p.Q358R	1.000	217	0%	208	35.6%	17	29.4%	benign(0.348)	tolerated(0.09)	neutral(0.406)	NULL
ASB7	140460	genome.wustl.edu	37	15	101169707	101169707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_198243.2	+1	reviewed	p.R93W	1.000	73	0%	39	30.8%	6	66.6%	possibly_damaging(0.8)	deleterious(0.05)	deleterious(0.646)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
C16orf11	146325	genome.wustl.edu	37	16	613623	613623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_145270.1	+1	predicted	p.A110V	0.001	36	0%	27	48.1%	0	-	probably_damaging(0.957)	deleterious(0.04)	deleterious(0.750)	NULL
RHOT2	89941	genome.wustl.edu	37	16	721776	721776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138769.1	+1	provisional	p.D317N	1.000	27	0%	18	22.2%	88	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_EF_HAND_1,superfamily_EF-hand
CCDC78	124093	genome.wustl.edu	37	16	774448	774448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001031737.2	-1	validated	p.A276E	0.006	27	0%	27	40.7%	1	0%	possibly_damaging(0.887)	tolerated(0.15)	deleterious(0.588)	NULL
CHTF18	63922	genome.wustl.edu	37	16	842299	842299	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022092.2	+1	validated	p.G426	0.000	74	0%	49	10.2%	23	13%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SSTR5	6755	genome.wustl.edu	37	16	1129206	1129206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001053.3	+1	reviewed	p.R113H	1.000	39	0%	34	58.8%	0	-	possibly_damaging(0.922)	deleterious(0.04)	deleterious(0.720)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
IFT140	9742	genome.wustl.edu	37	16	1636257	1636257	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014714.3	-1	validated	p.T343	0.006	110	0%	75	25.3%	14	42.8%	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
RPL3L	6123	genome.wustl.edu	37	16	1997346	1997346	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005061.2	-1	reviewed	p.H179	1.000	80	0%	57	40.4%	0	-	-	-	-	HMMPfam_Ribosomal_L3,superfamily_Translat_factor
PKD1	5310	genome.wustl.edu	37	16	2165512	2165512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001009944.2	-1	reviewed	p.P655L	0.016	29	0%	16	50%	14	7.1%	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
SRRM2	23524	genome.wustl.edu	37	16	2813939	2813939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016333.3	+1	validated	p.R1137M	0.283	71	0%	63	46%	54	51.8%	unknown(0)	-	-	NULL
TCEB2	6923	genome.wustl.edu	37	16	2822078	2822078	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_207013.1	-1	reviewed	p.I90	0.536	114	0%	108	40.7%	1258	46.9%	-	-	-	superfamily_SSF54236
PMM2	5373	genome.wustl.edu	37	16	8895686	8895686	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000303.2	+1	reviewed	p.Q33*	0.727	172	0%	149	39.6%	21	47.6%	-	-	-	HMMPfam_PMM,superfamily_HAD-like
CIITA	4261	genome.wustl.edu	37	16	11001003	11001003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000246.3	+1	reviewed	p.R552C	0.987	20	0%	13	38.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT
C16orf62	57020	genome.wustl.edu	37	16	19580908	19580908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020314.4	+1	predicted	p.A94T	0.004	50	0%	39	46.2%	11	27.2%	benign(0.126)	tolerated(0.1)	neutral(0.297)	NULL
GGA2	23062	genome.wustl.edu	37	16	23486299	23486299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015044.4	-1	reviewed	p.P459L	0.170	69	0%	67	35.8%	31	48.3%	benign(0.15)	deleterious(0.02)	neutral(0.396)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24581341	24581343	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006910.4	+1	reviewed	p.K1112in_frame_del	0.465:0.954:0.962	-	-	-	-	-	-	-	-	-	NULL
ARHGAP17	55114	genome.wustl.edu	37	16	24931538	24931538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000457275	-1	known	p.L842P	0.995	244	0%	213	37.6%	67	47.7%	-	-	-	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27503962	27503962	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001520.3	-1	validated	p.T983	0.339	224	0%	174	13.2%	24	20.8%	-	-	-	NULL
SULT1A1	6817	genome.wustl.edu	37	16	28618322	28618322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001055.2	-1	reviewed	p.P150H	1.000	553	0%	571	10.9%	21	28.5%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUFM	7284	genome.wustl.edu	37	16	28854394	28854394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003321.4	-1	reviewed	p.R424C	1.000	100	0%	93	18.3%	961	11.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
NFATC2IP	84901	genome.wustl.edu	37	16	28967303	28967303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032815.3	+1	validated	p.L195M	0.000	138	0%	98	39.8%	18	50%	benign(0.029)	tolerated(0.21)	neutral(0.045)	NULL
KCTD13	253980	genome.wustl.edu	37	16	29918231	29918231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178863.2	-1	provisional	p.E318K	0.981	112	0%	90	32.2%	56	51.7%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	NULL
ITGAL	3683	genome.wustl.edu	37	16	30507445	30507445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002209.2	+1	reviewed	p.Q511*	0.937	88	0%	53	60.4%	4	0%	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
FBRS	64319	genome.wustl.edu	37	16	30676629	30676629	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001105079.1	+1	validated	p.P17	1.000	13	0%	14	57.1%	35	25.7%	-	-	-	NULL
FBRS	64319	genome.wustl.edu	37	16	30681567	30681567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000395073	+1	known	p.E382G	0.790	42	0%	43	37.2%	41	39%	unknown(0)	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30783493	30783493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014771.2	+1	reviewed	p.E937D	1.000	52	0%	45	31.1%	150	24.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_RING/U-box
ZNF668	79759	genome.wustl.edu	37	16	31075584	31075584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024706.4	-1	validated	p.A66V	0.996	120	0%	109	35.8%	20	30%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31091496	31091496	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000358046	+1	known	e2+1	0.000	29	0%	24	33.3%	13	38.4%	-	-	-	-
C16orf58	64755	genome.wustl.edu	37	16	31508226	31508226	+	Missense_Mutation	SNP	C	C	T	rs185844277	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022744.2	-1	validated	p.V216M	0.917	45	0%	35	54.3%	81	45.6%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_DUF647
ZNF423	23090	genome.wustl.edu	37	16	49672595	49672595	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015069.2	-1	reviewed	p.H156	1.000	68	0%	42	11.9%	17	35.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PAPD5	64282	genome.wustl.edu	37	16	50250026	50250026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001040284.2	+1	validated	p.P60S	1.000	228	0.4%	197	40.1%	7	42.8%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
ADCY7	113	genome.wustl.edu	37	16	50345992	50345994	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001114.3	+1	reviewed	p.K833in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
RBL2	5934	genome.wustl.edu	37	16	53514572	53514572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005611.3	+1	validated	p.G992V	0.903	105	0%	95	33.7%	46	56.5%	possibly_damaging(0.804)	deleterious(0.03)	deleterious(0.667)	HMMPfam_RB_B,superfamily_Cyclin_like
SLC6A2	6530	genome.wustl.edu	37	16	55733481	55733481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001043.3	+1	reviewed	p.S502N	1.000	216	0%	157	42%	1	100%	benign(0.364)	tolerated(0.11)	neutral(0.388)	HMMPfam_SNF
NUP93	9688	genome.wustl.edu	37	16	56867238	56867238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014669.3	+1	validated	p.R486H	1.000	110	0%	121	43%	58	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nic96
NLRC5	84166	genome.wustl.edu	37	16	57059917	57059917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032206.3	+1	validated	p.C354	0.889	47	0%	27	29.6%	2	0%	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
CES3	23491	genome.wustl.edu	37	16	66998317	66998317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024922.4	+1	validated	p.L206F	0.001	140	0%	114	28.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
EDC4	23644	genome.wustl.edu	37	16	67911495	67911495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014329.3	+1	validated	p.P242H	0.921	134	0%	93	39.8%	34	29.4%	possibly_damaging(0.442)	deleterious(0.01)	deleterious(0.550)	superfamily_WD40 repeat-like
SLC12A4	6560	genome.wustl.edu	37	16	67984391	67984391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005072.4	-1	validated	p.G487D	1.000	83	0%	78	37.2%	40	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
MTSS1L	92154	genome.wustl.edu	37	16	70712236	70712236	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138383.2	-1	provisional	p.T181	0.987	51	0%	39	38.5%	54	53.7%	-	-	-	HMMPfam_IMD
VAC14	55697	genome.wustl.edu	37	16	70721926	70721926	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018052.3	-1	validated	p.L752	1.000	214	0%	158	38%	99	51.5%	-	-	-	NULL
ADAT1	23536	genome.wustl.edu	37	16	75651070	75651070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012091.2	-1	reviewed	p.I132V	0.002	256	0%	208	39.4%	10	50%	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_A_deamin,HMMSmart_SM00552
TAF1C	9013	genome.wustl.edu	37	16	84215393	84215393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005679.2	-1	reviewed	p.Q331H	1.000	103	0%	85	47.1%	15	26.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FBXO31	79791	genome.wustl.edu	37	16	87367807	87367807	+	Missense_Mutation	SNP	C	C	T	rs187880966	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024735.3	-1	validated	p.R361H	0.641	33	0%	14	78.6%	11	18.1%	benign(0.036)	tolerated(0.1)	neutral(0.288)	NULL
CDH15	1013	genome.wustl.edu	37	16	89251661	89251661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004933.2	+1	reviewed	p.Q195*	0.995	35	0%	25	44%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
FAM157C	100132055	genome.wustl.edu	37	16	90173023	90173023	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_001714162.2	+1	model	p.W270*	0.000	39	0%	24	37.5%	0	-	-	-	-	NULL
YWHAE	7531	genome.wustl.edu	37	17	1248584	1248588	+	RNA	DEL	AAAAA	AAAAA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	AAAAA	AAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NR_024058.1	-1	reviewed	NULL	1.000:1.000:1.000:1.000:0.995	-	-	-	-	-	-	-	-	-	-
KIAA0664	23277	genome.wustl.edu	37	17	2595865	2595865	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015229.3	-1	validated	p.D1107	0.998	28	0%	15	46.7%	102	45%	-	-	-	superfamily_SSF48452
ACAP1	9744	genome.wustl.edu	37	17	7245318	7245318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014716.3	+1	validated	p.A55T	0.004	124	0%	96	47.9%	2	0%	benign(0)	tolerated(1)	-	NULL
NLGN2	57555	genome.wustl.edu	37	17	7317803	7317803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020795.2	+1	reviewed	p.G217W	1.000	87	0%	81	16%	20	15%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
MYH4	4622	genome.wustl.edu	37	17	10356556	10356556	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017533.2	-1	validated	p.Q1008	1.000	457	0%	427	41%	0	-	-	-	-	NULL
ZNF287	57336	genome.wustl.edu	37	17	16467083	16467083	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020653.2	-1	validated	p.L186	1.000	132	0%	116	43.1%	10	60%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
MYO15A	51168	genome.wustl.edu	37	17	18058475	18058475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016239.3	+1	reviewed	p.R2759Q	1.000	70	0%	55	54.5%	0	-	probably_damaging(0.999)	-	-	NULL
EVPLL	645027	genome.wustl.edu	37	17	18284264	18284264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001145127.1	+1	validated	p.A5T	0.996	114	0%	77	36.4%	1	0%	benign(0.223)	deleterious(0)	neutral(0.467)	NULL
AKAP10	11216	genome.wustl.edu	37	17	19845198	19845198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007202.2	-1	reviewed	p.Q334H	1.000	126	0%	123	52.8%	9	11.1%	benign(0.005)	tolerated(0.25)	neutral(0.037)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
KSR1	8844	genome.wustl.edu	37	17	25909963	25909963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014238.1	+1	validated	p.P134L	1.000	37	0%	22	59.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NEK8	284086	genome.wustl.edu	37	17	27062353	27062353	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178170.2	+1	reviewed	p.Y194	0.744	121	0%	79	41.8%	4	25%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO18A	399687	genome.wustl.edu	37	17	27442683	27442683	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_078471.3	-1	validated	p.T742	1.000	60	0%	36	30.6%	4	25%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000226049	0	genome.wustl.edu	37	17	32364961	32364961	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000430493	-1	known	p.S586	1.000	323	0.6%	258	41.5%	11	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DUSP14	11072	genome.wustl.edu	37	17	35872763	35872765	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007026.2	+1	validated	p.N131in_frame_del	1.000:1.000:0.995	-	-	-	-	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MED24	9862	genome.wustl.edu	37	17	38178256	38178256	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014815.3	-1	reviewed	p.R859*	1.000	115	0%	99	41.4%	26	30.7%	-	-	-	NULL
MED24	9862	genome.wustl.edu	37	17	38179577	38179578	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014815.3	-1	reviewed	p.K686fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KAT2A	2648	genome.wustl.edu	37	17	40270019	40270019	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021078.2	-1	validated	p.A399	0.000	46	0%	39	43.6%	35	42.8%	-	-	-	NULL
ATP6V0A1	535	genome.wustl.edu	37	17	40653315	40653315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001130020.1	+1	reviewed	p.K673T	1.000	428	0.2%	341	46.6%	19	52.6%	benign(0.233)	deleterious(0.03)	neutral(0.388)	HMMPfam_V_ATPase_I
PLEKHH3	79990	genome.wustl.edu	37	17	40823041	40823041	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024927.4	-1	validated	p.L464	0.977	13	0%	14	50%	31	48.3%	-	-	-	HMMSmart_SM00295
MAPT	4137	genome.wustl.edu	37	17	44060711	44060711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001123066.3	+1	validated	p.G181S	0.013	17	0.000	9	0.667	0	-	benign(0)	tolerated(1)	-	NULL
LRRC46	90506	genome.wustl.edu	37	17	45914155	45914155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033413.3	+1	validated	p.R212M	0.013	52	0%	22	36.4%	5	60%	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	NULL
SEPT4	5414	genome.wustl.edu	37	17	56599294	56599294	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_080415.1	-1	reviewed	p.P258	0.202	161	0%	124	30.6%	5	20%	-	-	-	NULL
SMG8	55181	genome.wustl.edu	37	17	57288374	57288374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018149.6	+1	validated	p.Q321L	1.000	86	0%	72	40.3%	12	41.6%	benign(0.05)	tolerated(0.68)	neutral(0.005)	HMMPfam_DUF2146
TLK2	11011	genome.wustl.edu	37	17	60601691	60601691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006852.3	+1	validated	p.P121L	1.000	71	0%	78	38.5%	5	0%	benign(0.023)	tolerated(0.11)	neutral(0.273)	NULL
MRC2	9902	genome.wustl.edu	37	17	60768361	60768361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006039.3	+1	validated	p.G1355E	0.998	33	0%	20	20%	56	12.5%	possibly_damaging(0.717)	tolerated(0.32)	neutral(0.284)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ERN1	2081	genome.wustl.edu	37	17	62133184	62133184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001433.3	-1	reviewed	p.G508D	0.001	26	0%	25	44%	2	50%	benign(0.139)	tolerated(0.23)	neutral(0.054)	NULL
DDX5	1655	genome.wustl.edu	37	17	62496268	62496268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004396.3	-1	validated	p.Y540H	1.000	154	0%	135	22.2%	607	21.4%	benign(0.038)	tolerated(0.12)	neutral(0.263)	NULL
LOC100289243	100289243	genome.wustl.edu	37	17	62746663	62746663	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	XM_002343577.1	+1	model	p.P97	1.000	114	0%	105	56.2%	10	40%	-	-	-	HMMPfam_Sec63,HMMSmart_SM00611
MRPS7	51081	genome.wustl.edu	37	17	73261847	73261847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015971.3	+1	reviewed	p.C191Y	1.000	76	0%	57	36.8%	160	48.7%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_Ribosomal_S7,superfamily_Ribosomal protein S7
LLGL2	3993	genome.wustl.edu	37	17	73570746	73570746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001031803.1	+1	reviewed	p.G1018*	0.995	62	0%	40	30%	132	31%	-	-	-	NULL
UNC13D	201294	genome.wustl.edu	37	17	73836160	73836160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_199242.2	-1	reviewed	p.S297N	1.000	82	0%	58	53.4%	27	29.6%	benign(0.02)	tolerated(0.65)	neutral(0.004)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74271974	74271974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032134.1	-1	provisional	p.P1637L	0.758	133	0%	87	36.8%	3	33.3%	unknown(0)	-	-	NULL
CYGB	114757	genome.wustl.edu	37	17	74524663	74524663	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_134268.3	-1	validated	p.P190	0.033	100	0%	96	44.8%	44	47.7%	-	-	-	NULL
TBC1D16	125058	genome.wustl.edu	37	17	77918743	77918743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_019020.2	-1	provisional	p.A624	0.006	24	0%	17	47.1%	51	56.8%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ASPSCR1	79058	genome.wustl.edu	37	17	79954420	79954420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024083.2	+1	reviewed	p.D211N	0.017	35	0%	40	30%	33	42.4%	unknown(0)	tolerated(0.64)	-	NULL
HEXDC	284004	genome.wustl.edu	37	17	80400367	80400367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173620.2	+1	validated	p.A553T	0.000	24	0%	24	54.2%	14	42.8%	unknown(0)	-	-	NULL
THOC1	9984	genome.wustl.edu	37	18	259191	259191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005131.2	-1	validated	p.S170F	1.000	68	0%	69	27.5%	22	63.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6959370	6959370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005559.2	-1	validated	p.A2583V	0.030	107	0%	99	50.5%	14	42.8%	possibly_damaging(0.685)	tolerated(0.14)	deleterious(0.494)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
PPP4R1	9989	genome.wustl.edu	37	18	9559585	9559585	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001042388.1	-1	validated	p.A620	0.394	71	0%	43	44.2%	53	32%	-	-	-	superfamily_ARM repeat
RBBP8	5932	genome.wustl.edu	37	18	20576374	20576374	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002894.2	+1	reviewed	p.P659	0.998	150	0%	141	38.3%	28	39.2%	-	-	-	NULL
DSG2	1829	genome.wustl.edu	37	18	29116255	29116255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001943.3	+1	reviewed	p.T505I	0.000	116	0%	79	39.2%	16	68.7%	benign(0.186)	tolerated(0.07)	neutral(0.337)	superfamily_Cadherin
SLC39A6	25800	genome.wustl.edu	37	18	33706653	33706653	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012319.3	-1	validated	p.S106	0.637	490	0%	448	43.3%	58	44.8%	-	-	-	NULL
ZADH2	284273	genome.wustl.edu	37	18	72913821	72913821	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_175907.4	-1	validated	p.P228	0.854	109	0%	83	41%	33	39.3%	-	-	-	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
ZNF516	9658	genome.wustl.edu	37	18	74091839	74091839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000443185	-1	known	p.P744H	0.048	82	0%	52	50%	14	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
SHC2	25759	genome.wustl.edu	37	19	422180	422180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012435.2	-1	validated	p.P529H	1.000	28	0%	28	32.1%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
GZMM	3004	genome.wustl.edu	37	19	549128	549128	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005317.2	+1	reviewed	p.S185	0.002	17	0%	11	54.5%	2	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SBNO2	22904	genome.wustl.edu	37	19	1119605	1119605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014963.2	-1	validated	p.R428Q	0.999	37	2.7%	23	34.8%	28	21.4%	possibly_damaging(0.573)	deleterious(0.01)	deleterious(0.602)	NULL
SBNO2	22904	genome.wustl.edu	37	19	1122248	1122248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014963.2	-1	validated	p.V347I	1.000	38	0%	53	39.6%	40	25%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TICAM1	148022	genome.wustl.edu	37	19	4817329	4817329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_182919.2	-1	validated	p.T354I	0.001	32	0%	35	45.7%	19	42.1%	benign(0.378)	tolerated(0.13)	neutral(0.373)	NULL
PTPRS	5802	genome.wustl.edu	37	19	5221243	5221243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002850.3	-1	reviewed	p.L1075V	0.043	140	0%	116	33.6%	73	57.5%	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C3	718	genome.wustl.edu	37	19	6694620	6694620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000064.2	-1	reviewed	p.E992D	1.000	50	0%	54	48.1%	12	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7615453	7615453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006702.4	+1	reviewed	p.R627H	1.000	39	0%	36	41.7%	30	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
ELAVL1	1994	genome.wustl.edu	37	19	8046014	8046015	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001419.2	-1	reviewed	p.R76fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ACTL9	284382	genome.wustl.edu	37	19	8808272	8808272	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_178525.3	-1	validated	p.Y260	0.994	17	0%	15	60%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
MUC16	94025	genome.wustl.edu	37	19	9090214	9090214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024690.2	-1	validated	p.T534I	0.017	159	0%	166	41%	0	-	unknown(0)	-	-	NULL
ZNF177	7730	genome.wustl.edu	37	19	9492292	9492292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003451.2	+1	validated	p.C269R	0.996	134	0%	133	12%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OLFM2	93145	genome.wustl.edu	37	19	9965446	9965446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_058164.2	-1	provisional	p.L261M	1.000	114	0%	71	50.7%	27	55.5%	possibly_damaging(0.795)	tolerated(0.22)	neutral(0.340)	HMMPfam_OLF,HMMSmart_OLF
TYK2	7297	genome.wustl.edu	37	19	10476376	10476376	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003331.4	-1	reviewed	p.P276	0.000	24	0%	23	39.1%	16	18.7%	-	-	-	NULL
S1PR5	53637	genome.wustl.edu	37	19	10624499	10624499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030760.4	-1	validated	p.A397T	0.018	19	0%	14	57.1%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
CCDC151	115948	genome.wustl.edu	37	19	11537532	11537532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_145045.4	-1	validated	p.V229M	0.738	141	0%	122	42.6%	0	-	possibly_damaging(0.585)	deleterious(0.05)	deleterious(0.547)	NULL
CC2D1A	54862	genome.wustl.edu	37	19	14024359	14024359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017721.4	+1	reviewed	p.A219V	0.000	48	0%	37	43.2%	30	40%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
ENSG00000248045	0	genome.wustl.edu	37	19	14281667	14281667	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000498856	+1	novel	NULL	0.000	37	0%	40	35%	0	-	-	-	-	-
KCNN1	3780	genome.wustl.edu	37	19	18100609	18100609	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002248.3	+1	reviewed	p.R419	1.000	149	0%	117	13.7%	47	17%	-	-	-	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel
CRTC1	23373	genome.wustl.edu	37	19	18854924	18854924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001098482.1	+1	validated	p.G84R	1.000	197	0%	136	46.3%	0	-	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	NULL
SUGP1	57794	genome.wustl.edu	37	19	19414828	19414828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000334782	-1	known	p.P188L	0.000	19	0%	18	44.4%	0	-	unknown(0)	tolerated(0.14)	-	NULL
ZNF681	148213	genome.wustl.edu	37	19	23938266	23938266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_138286.2	-1	validated	p.N31D	0.438	163	0%	220	41.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF507	22847	genome.wustl.edu	37	19	32844315	32844315	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001136156.1	+1	validated	p.C193	0.451	75	1.3%	65	41.5%	2	100%	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36593649	36593649	+	Silent	SNP	C	C	T	rs187029707	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001083961.1	+1	validated	p.P1077	0.000	83	0%	61	47.5%	9	33.3%	-	-	-	NULL
ZNF382	84911	genome.wustl.edu	37	19	37118346	37118346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032825.3	+1	validated	p.G516D	1.000	103	0%	97	43.3%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37147375	37147375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_153257.2	-1	validated	p.R69S	0.020	203	0%	167	32.9%	3	100%	benign(0.007)	tolerated(0.27)	neutral(0.034)	NULL
MAP4K1	11184	genome.wustl.edu	37	19	39108456	39108456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007181.4	-1	validated	p.T27M	1.000	81	0%	84	39.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CAPN12	147968	genome.wustl.edu	37	19	39233696	39233696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_144691.3	-1	validated	p.T95I	0.943	62	0%	55	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
PLEKHG2	64857	genome.wustl.edu	37	19	39909388	39909388	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000205135	+1	known	p.A263V	0.994	90	0%	91	53.8%	35	51.4%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FCGBP	8857	genome.wustl.edu	37	19	40392735	40392735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003890.2	-1	validated	p.L2590R	1.000	163	0%	116	22.4%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_VWD,HMMSmart_VWD
SPTBN4	57731	genome.wustl.edu	37	19	41009771	41009771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020971.2	+1	reviewed	p.A466V	1.000	41	2.4%	33	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CYP2S1	29785	genome.wustl.edu	37	19	41700566	41700566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030622.6	+1	reviewed	p.S99G	0.034	211	0%	158	42.4%	2	100%	possibly_damaging(0.519)	tolerated(0.13)	neutral(0.427)	HMMPfam_p450,superfamily_Cytochrome P450
GRIK5	2901	genome.wustl.edu	37	19	42510901	42510901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002088.3	-1	reviewed	p.V645M	1.000	100	0%	62	46.8%	32	12.5%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
ZNF574	64763	genome.wustl.edu	37	19	42585253	42585253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022752.5	+1	validated	p.R832H	1.000	48	0%	38	23.7%	45	40%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CIC	23152	genome.wustl.edu	37	19	42797952	42797952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015125.3	+1	validated	p.P1335H	1.000	42	0%	42	28.6%	60	25%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
PLAUR	5329	genome.wustl.edu	37	19	44174247	44174247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002659.2	-1	reviewed	p.L9P	0.392	54	0%	44	36.4%	13	23%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KLC3	147700	genome.wustl.edu	37	19	45852088	45852088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_177417.2	+1	reviewed	p.T293M	1.000	85	0%	51	43.1%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
PPP1R13L	10848	genome.wustl.edu	37	19	45900241	45900241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001142502.1	-1	validated	p.G92C	0.194	36	0%	35	40%	25	48%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GLTSCR1	29998	genome.wustl.edu	37	19	48204763	48204763	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015711.3	+1	provisional	p.S1258	0.955	22	0%	13	38.5%	9	55.5%	-	-	-	NULL
SYNGR4	23546	genome.wustl.edu	37	19	48876797	48876797	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012451.2	+1	reviewed	p.S39	0.954	96	0%	74	47.3%	0	-	-	-	-	HMMPfam_MARVEL
IZUMO1	284359	genome.wustl.edu	37	19	49246748	49246748	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_182575.2	-1	validated	p.N151	0.006	176	0%	146	41.1%	0	-	-	-	-	NULL
PPFIA3	8541	genome.wustl.edu	37	19	49636561	49636561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003660.2	+1	reviewed	p.L365P	1.000	29	0%	28	57.1%	10	40%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
TRPM4	54795	genome.wustl.edu	37	19	49675335	49675335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017636.2	+1	provisional	p.E374K	1.000	149	0%	131	38.2%	45	37.7%	possibly_damaging(0.873)	tolerated(0.09)	deleterious(0.635)	NULL
AP2A1	160	genome.wustl.edu	37	19	50285966	50285966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014203.2	+1	reviewed	p.R153H	1.000	43	0%	39	43.6%	92	39.1%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_Adaptin_N,superfamily_ARM repeat
MYBPC2	4606	genome.wustl.edu	37	19	50957549	50957549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004533.3	+1	validated	p.R646H	0.965	28	0%	28	46.4%	0	-	benign(0.043)	tolerated(0.05)	neutral(0.348)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ZNF841	284371	genome.wustl.edu	37	19	52570138	52570138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001136499.1	-1	validated	p.V333I	0.000	185	0%	196	35.2%	6	50%	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF813	126017	genome.wustl.edu	37	19	53994705	53994705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001004301.3	+1	validated	p.G407R	1.000	117	0%	157	46.5%	5	40%	possibly_damaging(0.739)	deleterious(0.04)	deleterious(0.619)	superfamily_SSF57667
MBOAT7	79143	genome.wustl.edu	37	19	54677942	54677942	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024298.3	-1	reviewed	p.R405	0.282	90	0%	61	44.3%	143	32.1%	-	-	-	HMMPfam_MBOAT
LILRB5	10990	genome.wustl.edu	37	19	54756388	54756388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001081442.1	-1	reviewed	p.A500V	0.025	178	0%	199	11.6%	5	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZSCAN4	201516	genome.wustl.edu	37	19	58189814	58189814	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152677.2	+1	validated	p.S281	0.000	123	0.8%	87	47.1%	0	-	-	-	-	NULL
SLC27A5	10998	genome.wustl.edu	37	19	59022950	59022950	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_012254.2	-1	reviewed	p.R125*	0.002	28	0%	28	21.4%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
TGM6	343641	genome.wustl.edu	37	20	2384077	2384077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_198994.2	+1	validated	p.R342W	1.000	77	0%	54	55.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
RASSF2	9770	genome.wustl.edu	37	20	4771186	4771186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014737.2	-1	reviewed	p.R150C	0.996	81	0%	60	16.7%	2	0%	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	NULL
MCM8	84515	genome.wustl.edu	37	20	5974157	5974157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032485.4	+1	reviewed	p.L749P	1.000	106	0%	83	31.3%	11	54.5%	possibly_damaging(0.822)	tolerated(0.06)	deleterious(0.633)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
PAX1	5075	genome.wustl.edu	37	20	21687618	21687618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006192.3	+1	validated	p.A277T	0.907	21	0%	13	61.5%	0	-	benign(0.053)	tolerated(0.31)	neutral(0.030)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36396382	36396382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_030877.3	+1	reviewed	p.R229Q	1.000	314	0%	233	38.2%	49	53%	benign(0.19)	tolerated(0.08)	neutral(0.318)	superfamily_ARM repeat
EMILIN3	90187	genome.wustl.edu	37	20	39993741	39993741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_052846.1	-1	validated	p.A75V	0.880	189	0%	129	31%	1	0%	benign(0.195)	tolerated(0.56)	neutral(0.025)	HMMPfam_EMI
JPH2	57158	genome.wustl.edu	37	20	42744517	42744517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020433.4	-1	reviewed	p.A600T	0.003	15	0%	17	23.5%	0	-	benign(0.003)	tolerated(0.52)	neutral(0.009)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45867566	45867567	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000471951	-1	known	p.869in_frame_insQ	0.658:0.997	-	-	-	-	-	-	-	-	-	NULL
KCNB1	3745	genome.wustl.edu	37	20	47991190	47991190	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004975.2	-1	reviewed	p.R303*	1.000	90	0%	59	10.2%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CDH4	1002	genome.wustl.edu	37	20	60504829	60504829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001794.2	+1	reviewed	p.G723D	0.154	112	0%	70	32.9%	0	-	probably_damaging(1)	tolerated(0.77)	deleterious(0.501)	NULL
SLCO4A1	28231	genome.wustl.edu	37	20	61299244	61299244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000451793	+1	known	p.R27Q	0.000	139	0%	100	43%	1	0%	probably_damaging(0.971)	tolerated(0.05)	deleterious(0.758)	NULL
OGFR	11054	genome.wustl.edu	37	20	61439674	61439674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007346.2	+1	reviewed	p.N106D	0.634	91	0%	79	38%	49	59.1%	probably_damaging(0.98)	tolerated(1)	neutral(0.424)	HMMPfam_OGFr_N
KCNQ2	3785	genome.wustl.edu	37	20	62078192	62078192	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_172107.2	-1	reviewed	e2-2	0.995	55	0%	37	32.4%	0	-	-	-	-	-
RTEL1	51750	genome.wustl.edu	37	20	62326167	62326167	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032957.3	+1	reviewed	p.S1061	0.000	41	0%	26	30.8%	21	33.3%	-	-	-	NULL
ZGPAT	84619	genome.wustl.edu	37	20	62364696	62364696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_032527.3	+1	validated	p.R237H	0.967	33	0%	27	18.5%	41	31.7%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
ADAMTS5	11096	genome.wustl.edu	37	21	28338332	28338332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007038.3	-1	reviewed	p.R127W	1.000	10	0%	18	44.4%	1	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Pep_M12B_propep
SLC5A3	6526	genome.wustl.edu	37	21	35468492	35468492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006933.4	+1	validated	p.N332S	1.000	144	0%	111	47.7%	3	33.3%	benign(0.001)	tolerated(0.73)	neutral(0.002)	HMMPfam_SSF
DOPEY2	9980	genome.wustl.edu	37	21	37571384	37571384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005128.2	+1	validated	p.L52P	1.000	232	0%	195	40%	2	100%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_Dopey_N
UMODL1	89766	genome.wustl.edu	37	21	43539414	43539414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173568.3	+1	validated	p.R1018K	0.000	123	0%	99	45.5%	0	-	benign(0.002)	tolerated(0.52)	neutral(0.009)	HMMPfam_SEA
KRTAP10-8	386681	genome.wustl.edu	37	21	46032609	46032609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_198695.2	+1	validated	p.C198R	0.999	240	0%	220	38.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Keratin_B2
ADARB1	104	genome.wustl.edu	37	21	46640842	46640842	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_015833.3	+1	validated	p.N653	0.994	51	0%	29	37.9%	8	62.5%	-	-	-	HMMPfam_A_deamin,HMMSmart_SM00552
COL6A1	1291	genome.wustl.edu	37	21	47423483	47423483	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001848.2	+1	reviewed	p.T881	0.000	13	0%	16	43.8%	183	19.6%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
MCM3AP	8888	genome.wustl.edu	37	21	47705021	47705021	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003906.3	-1	reviewed	p.A60	0.000	146	0%	115	27%	7	14.2%	-	-	-	NULL
DIP2A	23181	genome.wustl.edu	37	21	47965904	47965904	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_206891.2	+1	reviewed	p.G808	0.058	98	0%	65	41.5%	1	0%	-	-	-	NULL
CLTCL1	8218	genome.wustl.edu	37	22	19170957	19170957	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_007098.3	-1	reviewed	p.L1591	0.885	87	0%	73	45.2%	8	75%	-	-	-	NULL
ZNF74	7625	genome.wustl.edu	37	22	20759843	20759843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_003426.2	+1	validated	p.V174I	0.000	68	0%	36	58.3%	9	55.5%	unknown(0)	-	-	NULL
EWSR1	2130	genome.wustl.edu	37	22	29695624	29695624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005243.3	+1	reviewed	p.R572W	0.999	370	0.3%	326	41.1%	331	38.6%	unknown(0)	deleterious(0.02)	-	NULL
LIMK2	3985	genome.wustl.edu	37	22	31658715	31658715	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001031801.1	+1	reviewed	p.H243	0.000	68	0%	53	41.5%	14	35.7%	-	-	-	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32241192	32241192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014662.2	+1	validated	p.R988H	1.000	96	0%	87	46%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOL12	79159	genome.wustl.edu	37	22	38087249	38087249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024313.2	+1	validated	p.R183Q	0.000	47	0%	37	40.5%	26	50%	possibly_damaging(0.912)	tolerated(0.28)	neutral(0.395)	HMMPfam_Nop25
TRIOBP	11078	genome.wustl.edu	37	22	38153822	38153822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001039141.2	+1	reviewed	p.R1964C	0.999	25	0%	16	62.5%	59	52.5%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
MICALL1	85377	genome.wustl.edu	37	22	38323763	38323763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_033386.2	+1	validated	p.P604H	0.991	63	0%	45	20%	31	29%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
APOBEC3D	140564	genome.wustl.edu	37	22	39421654	39421654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152426.3	+1	reviewed	p.R195C	0.000	213	0%	201	47.8%	3	0%	benign(0.006)	tolerated(0.11)	neutral(0.272)	NULL
TTC38	55020	genome.wustl.edu	37	22	46684374	46684374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_017931.2	+1	validated	p.S324N	0.664	69	0%	62	50%	24	45.8%	benign(0.045)	tolerated(0.42)	neutral(0.017)	NULL
TBC1D22A	25771	genome.wustl.edu	37	22	47189509	47189509	+	Silent	SNP	C	C	T	rs138211003	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014346.1	+1	provisional	p.D77	0.240	29	0%	24	50%	25	44%	-	-	-	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50667897	50667897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_020461.3	-1	reviewed	p.R409H	1.000	48	0%	34	35.3%	13	30.7%	possibly_damaging(0.941)	tolerated(0.11)	deleterious(0.658)	HMMPfam_Spc97_Spc98
PPP6R2	9701	genome.wustl.edu	37	22	50845239	50845239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014678.3	+1	validated	p.N117D	1.000	129	0%	87	44.8%	24	50%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
SCML2	10389	genome.wustl.edu	37	X	18265925	18265926	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006089.2	-1	validated	p.P512fs	0.998:0.977	-	-	-	-	-	-	-	-	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18775757	18775757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006240.2	+1	reviewed	p.H137Y	0.014	251	0%	189	41.3%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
KLHL34	257240	genome.wustl.edu	37	X	21675201	21675201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_153270.1	-1	provisional	p.V236M	0.165	23	0%	15	66.7%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_BACK
KLHL34	257240	genome.wustl.edu	37	X	21675704	21675704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_153270.1	-1	provisional	p.R68H	0.247	26	0%	12	33.3%	0	-	benign(0.154)	tolerated(0.12)	neutral(0.274)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
IL1RAPL1	11141	genome.wustl.edu	37	X	29973820	29973820	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_014271.3	+1	reviewed	p.N658	0.996	78	0%	51	51%	0	-	-	-	-	NULL
BCOR	54880	genome.wustl.edu	37	X	39932680	39932680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001123385.1	-1	reviewed	p.L640R	0.487	94	0%	74	45.9%	7	57.1%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
MED14	9282	genome.wustl.edu	37	X	40526049	40526049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004229.3	-1	reviewed	p.A1063V	1.000	88	0%	91	47.3%	12	66.6%	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
DUSP21	63904	genome.wustl.edu	37	X	44703390	44703390	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_022076.3	+1	reviewed	p.S4	0.000	114	0%	68	45.6%	0	-	-	-	-	NULL
HDAC6	10013	genome.wustl.edu	37	X	48674931	48674931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_006044.2	+1	reviewed	p.R561H	0.996	88	0%	71	29.6%	23	0%	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
CACNA1F	778	genome.wustl.edu	37	X	49062205	49062205	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005183.2	-1	reviewed	p.G1858	0.002	61	0%	42	19%	0	-	-	-	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49069146	49069146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005183.2	-1	reviewed	p.T1319I	1.000	131	0%	107	14%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TRO	7216	genome.wustl.edu	37	X	54957379	54957379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001039705.1	+1	reviewed	p.G1408C	0.000	106	0.9%	103	23.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASB12	142689	genome.wustl.edu	37	X	63445298	63445298	+	Missense_Mutation	SNP	C	C	T	rs145118752	by1000genomes	TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_130388.2	-1	reviewed	p.R69H	1.000	105	0%	85	38.8%	0	-	possibly_damaging(0.828)	tolerated(0.26)	neutral(0.348)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
EDA2R	60401	genome.wustl.edu	37	X	65819449	65819449	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021783.2	-1	reviewed	p.L257	1.000	114	0%	79	62%	0	-	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70341623	70341623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005120.2	+1	reviewed	p.P353H	1.000	241	0.4%	199	38.2%	10	0%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70389250	70389250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018977.3	+1	reviewed	p.R597Q	1.000	115	0.9%	103	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
ZMYM3	9203	genome.wustl.edu	37	X	70460830	70460830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_005096.3	-1	reviewed	p.R1350H	1.000	87	0%	61	11.5%	35	25.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TAF1	6872	genome.wustl.edu	37	X	70617234	70617234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_004606.3	+1	reviewed	p.Y1200H	1.000	168	0%	145	39.3%	8	75%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
ATRX	546	genome.wustl.edu	37	X	76874315	76874315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000489.3	-1	reviewed	p.R1803C	1.000	189	0%	132	45.5%	21	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZCCHC5	203430	genome.wustl.edu	37	X	77913568	77913568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_152694.2	-1	reviewed	p.P117H	0.000	188	0%	178	43.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
ZNF711	7552	genome.wustl.edu	37	X	84510753	84510755	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_021998.4	+1	reviewed	p.D193in_frame_del	0.988:0.988:0.978	-	-	-	-	-	-	-	-	-	HMMPfam_Zfx_Zfy_act
XKRX	402415	genome.wustl.edu	37	X	100177996	100177996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_212559.2	-1	reviewed	p.E143D	1.000	252	0%	213	46.9%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
RBM41	55285	genome.wustl.edu	37	X	106331787	106331787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_018301.3	-1	validated	p.K269T	1.000	202	0%	174	40.2%	6	0%	benign(0.271)	tolerated(0.67)	neutral(0.032)	NULL
ALG13	79868	genome.wustl.edu	37	X	110970188	110970188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	ENST00000394780	+1	known	p.M627I	0.004	150	0%	121	47.9%	5	80%	benign(0.014)	tolerated(0.3)	neutral(0.029)	NULL
NKAP	79576	genome.wustl.edu	37	X	119077457	119077457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_024528.3	-1	reviewed	p.R38W	0.987	41	0%	46	47.8%	27	0%	unknown(0)	tolerated(0.22)	-	NULL
C1GALT1C1	29071	genome.wustl.edu	37	X	119760270	119760270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001011551.2	-1	reviewed	p.V251A	1.000	298	0%	283	38.5%	46	0%	benign(0.131)	tolerated(0.6)	neutral(0.015)	NULL
TFDP3	51270	genome.wustl.edu	37	X	132351503	132351503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_016521.2	-1	reviewed	p.S262N	1.000	165	0%	169	50.3%	0	-	benign(0.087)	tolerated(0.32)	neutral(0.030)	HMMPfam_DP
MOSPD1	56180	genome.wustl.edu	37	X	134033312	134033312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_019556.1	-1	provisional	p.K51R	1.000	168	0.6%	169	38.5%	14	0%	possibly_damaging(0.783)	tolerated(0.24)	neutral(0.330)	HMMPfam_Motile_Sperm,superfamily_PapD-like
SLITRK4	139065	genome.wustl.edu	37	X	142718220	142718220	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_173078.3	-1	reviewed	p.I235	1.000	99	0%	100	38%	0	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
AFF2	2334	genome.wustl.edu	37	X	148035156	148035156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002025.3	+1	reviewed	p.G482R	0.805	106	0%	82	28%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148037783	148037783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_002025.3	+1	reviewed	p.C736	0.005	141	0%	110	47.3%	2	0%	-	-	-	HMMPfam_AF-4
IDS	3423	genome.wustl.edu	37	X	148584954	148584954	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000202.5	-1	reviewed	p.L102	0.995	219	0%	184	29.3%	8	50%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
MAGEA10	4109	genome.wustl.edu	37	X	151303592	151303592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001011543.1	-1	reviewed	p.N167K	0.000	158	0.6%	142	40.8%	0	-	benign(0.016)	tolerated(0.66)	neutral(0.003)	HMMPfam_MAGE
ZFP92	139735	genome.wustl.edu	37	X	152684157	152684157	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001136273.1	+1	validated	p.S20	0.746	295	0%	274	39.8%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
FLNA	2316	genome.wustl.edu	37	X	153578459	153578459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_001110556.1	-1	reviewed	p.H2425Y	1.000	97	0%	85	47.1%	816	74.7%	benign(0.068)	deleterious(0.04)	neutral(0.353)	NULL
G6PD	2539	genome.wustl.edu	37	X	153762366	153762366	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TJ-01A-11D-A10B-09	TCGA-BS-A0TJ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7674e26e-0fa5-4591-ba0d-3af26baae5d5	dd5fbce3-50fd-462e-858c-7a398f17aeea	NM_000402.3	-1	reviewed	p.N248	1.000	110	0%	101	30.7%	89	0%	-	-	-	HMMPfam_G6PD_C,superfamily_SSF55347
