Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
VPS13D	55187	genome.wustl.edu	37	1	12393358	12393358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015378.2	+1	reviewed	p.P2788H	1.000	282	0%	82	28%	1	0%	benign(0.116)	tolerated(0.11)	neutral(0.281)	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22816705	22816705	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001083621.1	+1	validated	p.H88	1.000	235	0%	70	35.7%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
EPHB2	2048	genome.wustl.edu	37	1	23222908	23222908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004442.6	+1	reviewed	p.R569W	1.000	154	0%	31	25.8%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24779932	24779932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020448.4	+1	validated	p.Y192C	1.000	324	0%	129	11.6%	2	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_DUF803
ARID1A	8289	genome.wustl.edu	37	1	27097630	27097630	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006015.4	+1	reviewed	p.W1073*	1.000	211	0%	63	14.3%	10	0%	-	-	-	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
KIAA0319L	79932	genome.wustl.edu	37	1	35913887	35913887	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024874.4	-1	reviewed	p.V800	1.000	334	0%	44	18.2%	16	0%	-	-	-	NULL
EPHA10	284656	genome.wustl.edu	37	1	38227511	38227511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001099439.1	-1	validated	p.R139H	0.340	38	0%	11	36.4%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
ZMYND12	84217	genome.wustl.edu	37	1	42896510	42896510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032257.4	-1	validated	p.R332M	0.003	575	0%	242	31%	16	56.2%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	superfamily_TPR-like
CDC20	991	genome.wustl.edu	37	1	43825703	43825703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001255.2	+1	reviewed	p.T164N	0.974	195	0%	24	29.2%	37	37.8%	benign(0.001)	tolerated(0.61)	neutral(0.004)	superfamily_WD40_like
SLC6A9	6536	genome.wustl.edu	37	1	44476479	44476479	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000475075	-1	known	NULL	1.000	421	0%	41	14.6%	1	0%	-	-	-	-
CPT2	1376	genome.wustl.edu	37	1	53676593	53676593	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000098.2	+1	reviewed	p.N416I	0.025	200	0%	60	11.7%	23	4.3%	benign(0.067)	deleterious(0.04)	neutral(0.353)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
LRP8	7804	genome.wustl.edu	37	1	53732242	53732242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004631.3	-1	reviewed	p.R444C	0.992	290	0%	81	17.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00135,superfamily_YWTD domain
LRRC7	57554	genome.wustl.edu	37	1	70493872	70493872	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020794.2	+1	validated	p.R567*	1.000	282	0%	97	22.7%	0	-	-	-	-	NULL
ST6GALNAC3	256435	genome.wustl.edu	37	1	76877984	76877984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152996.2	+1	validated	p.V169I	0.998	281	0.4%	170	12.4%	1	100%	benign(0.037)	tolerated(0.13)	neutral(0.255)	HMMPfam_Glyco_transf_29
COL24A1	255631	genome.wustl.edu	37	1	86591614	86591614	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152890.5	-1	validated	p.V135	0.002	157	0%	95	11.6%	0	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
SASS6	163786	genome.wustl.edu	37	1	100585950	100585950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_194292.1	-1	validated	p.K183N	1.000	501	0%	191	12%	1	0%	benign(0.174)	tolerated(0.21)	neutral(0.060)	NULL
VCAM1	7412	genome.wustl.edu	37	1	101200106	101200108	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001078.2	+1	reviewed	p.E615in_frame_del	0.539:0.559:0.992	-	-	-	-	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CHIA	27159	genome.wustl.edu	37	1	111860623	111860623	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000430615	+1	known	p.S137F	1.000	284	0%	116	31.9%	0	-	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
TRIM45	80263	genome.wustl.edu	37	1	117660749	117660751	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_025188.3	-1	reviewed	p.P376in_frame_del	0.123:0.066:0.917	-	-	-	-	-	-	-	-	-	NULL
HMGCS2	3158	genome.wustl.edu	37	1	120311427	120311427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005518.3	-1	reviewed	p.L14P	0.003	168	0%	82	13.4%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
RFX5	5993	genome.wustl.edu	37	1	151316273	151316273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000449.3	-1	reviewed	p.R214Q	1.000	111	0%	50	20%	37	2.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MRPL9	65005	genome.wustl.edu	37	1	151734931	151734931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_031420.2	-1	reviewed	p.G119D	0.996	424	0%	228	14%	56	16%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_L9 N-domain-like,HMMPfam_Ribosomal_L9_N
OAZ3	51686	genome.wustl.edu	37	1	151742669	151742669	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000453029	+1	known	p.R92C	0.727	585	0%	210	11.4%	8	0%	-	-	-	HMMPfam_ODC_AZ,PatternScan_ODC_AZ
RORC	6097	genome.wustl.edu	37	1	151787534	151787534	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005060.3	-1	reviewed	p.S222	1.000	131	0%	35	17.1%	28	10.7%	-	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153719802	153719802	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_023015.3	+1	validated	p.A160	0.111	1370	0%	770	12.2%	17	11.7%	-	-	-	NULL
ARHGEF2	9181	genome.wustl.edu	37	1	155932403	155932403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004723.3	-1	validated	p.R333H	1.000	239	0%	39	15.4%	25	12%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SEMA4A	64218	genome.wustl.edu	37	1	156132762	156132762	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_022367.2	+1	provisional	p.A337	0.916	399	0%	164	12.8%	9	11.1%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
FCRL3	115352	genome.wustl.edu	37	1	157667174	157667174	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_052939.3	-1	reviewed	p.T200	0.010	171	0%	72	15.3%	2	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158064850	158064850	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018240.5	+1	validated	p.Y738	1.000	109	0%	18	22.2%	1	0%	-	-	-	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176564317	176564317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020318.2	+1	validated	p.R526H	1.000	144	0%	51	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
CACNA1E	777	genome.wustl.edu	37	1	181690940	181690940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000721.2	+1	reviewed	p.R668H	1.000	463	0%	95	20%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RGS16	6004	genome.wustl.edu	37	1	182569517	182569517	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002928.3	-1	reviewed	p.K173	0.999	161	0%	44	15.9%	12	8.3%	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
C1orf53	388722	genome.wustl.edu	37	1	197874930	197874930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000436652	+1	known	p.W26*	1.000	267	0%	129	14.7%	11	45.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TNNT2	7139	genome.wustl.edu	37	1	201334419	201334419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000364.2	-1	reviewed	p.R104H	1.000	192	0%	65	15.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Troponin
DTL	51514	genome.wustl.edu	37	1	212273607	212273607	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016448.2	+1	validated	p.S425	0.140	315	0%	153	16.3%	7	0%	-	-	-	NULL
ANGEL2	90806	genome.wustl.edu	37	1	213178560	213178560	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_144567.3	-1	validated	p.R317*	1.000	315	0%	135	11.9%	10	0%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
CENPF	1063	genome.wustl.edu	37	1	214825218	214825221	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016343.3	+1	reviewed	p.K2719fs	0.010:0.036:0.066:0.216	-	-	-	-	-	-	-	-	-	NULL
C1orf198	84886	genome.wustl.edu	37	1	230979199	230979199	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032800.2	-1	validated	p.H276	0.000	145	0%	61	18%	14	14.2%	-	-	-	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232577529	232577529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020808.3	-1	validated	p.A1175T	0.943	231	0%	60	11.7%	9	22.2%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345287	235345287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016374.5	-1	reviewed	p.E983*	0.996	276	0%	126	18.3%	5	0%	-	-	-	NULL
GNG4	2786	genome.wustl.edu	37	1	235715489	235715489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001098721.1	-1	validated	p.R50W	0.021	244	0%	68	11.8%	0	-	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
OR14A16	284532	genome.wustl.edu	37	1	247978913	247978913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001001966.1	-1	provisional	p.N40S	0.871	335	0%	278	12.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248436359	248436359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001004695.1	-1	provisional	p.A253V	0.003	756	0.1%	309	10.4%	0	-	benign(0.211)	tolerated(0.07)	neutral(0.340)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T6	254879	genome.wustl.edu	37	1	248551673	248551673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005471.1	+1	provisional	p.A255V	0.104	636	0%	109	12.8%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_7tm_1,superfamily_SSF81321
ASAP2	8853	genome.wustl.edu	37	2	9528628	9528628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003887.2	+1	reviewed	p.P779H	0.994	65	0%	15	40%	4	0%	possibly_damaging(0.462)	tolerated(0.07)	deleterious(0.471)	NULL
ENSG00000181250	0	genome.wustl.edu	37	2	33952585	33952585	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000322472	-1	known	p.G86	0.987	67	0%	25	20%	0	-	-	-	-	NULL
STRN	6801	genome.wustl.edu	37	2	37076644	37076644	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003162.2	-1	validated	p.Y766*	1.000	284	0%	84	14.3%	6	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NRXN1	9378	genome.wustl.edu	37	2	50758559	50758559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001135659.1	-1	reviewed	p.V758G	1.000	98	0%	31	19.4%	0	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	superfamily_ConA_like_lec_gl
ERLEC1	27248	genome.wustl.edu	37	2	54042066	54042066	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015701.3	+1	validated	p.I458	1.000	339	0%	154	24.7%	27	25.9%	-	-	-	superfamily_Mannose 6-phosphate receptor domain
CLEC4F	165530	genome.wustl.edu	37	2	71044150	71044150	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_173535.2	-1	validated	p.I121	0.976	282	0%	26	23.1%	0	-	-	-	-	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74884722	74884722	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004263.3	+1	provisional	p.Q110*	1.000	488	0%	179	17.9%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
C2orf89	129293	genome.wustl.edu	37	2	85051249	85051249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001080824.1	-1	predicted	p.A339T	0.001	391	0%	69	10.1%	1	0%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
INPP4A	3631	genome.wustl.edu	37	2	99185084	99185084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001134224.1	+1	reviewed	p.R829Q	1.000	748	0%	179	15.6%	4	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
ENSG00000251207	0	genome.wustl.edu	37	2	114416191	114416191	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000514936	-1	novel	NULL	0.126	380	0%	140	13.6%	0	-	-	-	-	-
PTPN4	5775	genome.wustl.edu	37	2	120734587	120734587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002830.2	+1	reviewed	p.I908V	1.000	313	0%	103	20.4%	7	42.8%	benign(0.038)	tolerated(0.21)	neutral(0.046)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
STAM2	10254	genome.wustl.edu	37	2	153004587	153004587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005843.4	-1	reviewed	p.V84A	1.000	85	0%	29	13.8%	6	50%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
UPP2	151531	genome.wustl.edu	37	2	158980318	158980318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001135098.1	+1	validated	p.Y298C	1.000	325	0%	172	15.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
FAP	2191	genome.wustl.edu	37	2	163055345	163055345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004460.2	-1	reviewed	p.H442N	0.999	461	0%	159	13.8%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_DPPIV_N,superfamily_SSF82171
C2orf77	129881	genome.wustl.edu	37	2	170537620	170537620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001085447.1	-1	validated	p.R64M	0.147	579	0%	228	18.9%	4	0%	benign(0.261)	deleterious(0.02)	neutral(0.410)	NULL
ZAK	51776	genome.wustl.edu	37	2	174130844	174130844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016653.2	+1	reviewed	p.R590H	0.998	222	0%	67	16.4%	8	37.5%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
TTN	7273	genome.wustl.edu	37	2	179463706	179463706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000356127	-1	known	p.D16341N	1.000	225	0%	89	15.7%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179632620	179632620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_133379.3	-1	reviewed	p.R3113C	1.000	261	0%	74	18.9%	0	-	possibly_damaging(0.535)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
GLS	2744	genome.wustl.edu	37	2	191788704	191788706	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014905.3	+1	validated	p.K399in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase
SF3B1	23451	genome.wustl.edu	37	2	198263270	198263270	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012433.2	-1	reviewed	p.L1017	1.000	527	0%	183	14.8%	108	19.4%	-	-	-	superfamily_ARM repeat
ALS2	57679	genome.wustl.edu	37	2	202603401	202603401	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020919.3	-1	reviewed	p.K803N	0.998	314	0%	90	12.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DBL homology domain (DH-domain)
PARD3B	117583	genome.wustl.edu	37	2	206305390	206305390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152526.4	+1	validated	p.A951V	0.674	85	0%	28	25%	1	100%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209216106	209216106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015040.3	+1	reviewed	p.R1881H	1.000	381	0%	139	10.8%	1	0%	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
TMEM169	92691	genome.wustl.edu	37	2	216964917	216964917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001142310.1	+1	validated	p.Y182	0.996	561	0.2%	349	17.8%	0	-	-	-	-	NULL
ABCB6	10058	genome.wustl.edu	37	2	220082512	220082512	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005689.1	-1	reviewed	p.W189*	1.000	448	0%	24	16.7%	3	0%	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234878921	234878921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024080.4	+1	validated	p.V736M	1.000	989	0%	197	10.7%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
NDUFA10	4705	genome.wustl.edu	37	2	240958035	240958035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004544.3	-1	reviewed	p.R161H	1.000	184	0%	37	18.9%	63	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_dNK,superfamily_SSF52540
SETD5	55209	genome.wustl.edu	37	3	9512270	9512270	+	Missense_Mutation	SNP	G	G	T	rs147163116	by1000genomes	TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001080517.1	+1	provisional	p.G951V	0.000	280	0%	101	12.9%	17	29.4%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
CNOT10	25904	genome.wustl.edu	37	3	32754825	32754825	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015442.1	+1	provisional	p.I179M	0.998	571	0%	217	12.4%	4	25%	benign(0.001)	tolerated(0.06)	neutral(0.323)	superfamily_TPR-like
TRANK1	9881	genome.wustl.edu	37	3	36873544	36873544	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014831.2	-1	provisional	p.Y1916*	1.000	245	0%	66	22.7%	12	25%	-	-	-	NULL
SCN5A	6331	genome.wustl.edu	37	3	38622763	38622763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001099404.1	-1	reviewed	p.L963fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
IMPDH2	3615	genome.wustl.edu	37	3	49061927	49061927	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000884.2	-1	reviewed	e13+1	1.000	264	0%	29	17.2%	13	69.2%	-	-	-	-
LAMB2	3913	genome.wustl.edu	37	3	49169768	49169768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002292.3	-1	reviewed	p.R107H	1.000	434	0.2%	31	22.6%	14	35.7%	possibly_damaging(0.812)	tolerated(0.21)	neutral(0.349)	HMMPfam_Laminin_N,HMMSmart_LamNT
LAMB2	3913	genome.wustl.edu	37	3	49169824	49169824	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002292.3	-1	reviewed	p.C88	0.976	486	0%	30	13.3%	8	0%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT
DOCK3	1795	genome.wustl.edu	37	3	51127769	51127769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004947.3	+1	validated	p.D234N	0.999	358	0%	116	18.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
IQCF1	132141	genome.wustl.edu	37	3	51929261	51929261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152397.2	-1	validated	p.L88P	0.935	67	0%	25	24%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
PBRM1	55193	genome.wustl.edu	37	3	52682384	52682386	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018165.4	-1	validated	p.N263in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
MAGI1	9223	genome.wustl.edu	37	3	65342359	65342359	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001033057.1	-1	reviewed	p.R1361	0.210	116	0%	17	23.5%	7	57.1%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78711141	78711141	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002941.3	-1	reviewed	e14+2	1.000	318	0%	56	17.9%	0	-	-	-	-	-
DCBLD2	131566	genome.wustl.edu	37	3	98530093	98530093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_080927.3	-1	validated	p.Q507H	0.992	900	0.1%	264	15.2%	11	9%	possibly_damaging(0.46)	deleterious(0.01)	deleterious(0.556)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119109779	119109779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020754.2	+1	reviewed	p.V277D	1.000	168	0%	62	12.9%	0	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
POLQ	10721	genome.wustl.edu	37	3	121178942	121178942	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_199420.3	-1	validated	p.I2369	0.901	283	0%	90	17.8%	2	50%	-	-	-	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases
MGLL	11343	genome.wustl.edu	37	3	127429497	127429497	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000496306	-1	known	p.R70Q	0.015	219	0%	15	26.7%	6	33.3%	-	-	-	superfamily_alpha/beta-Hydrolases
IFT122	55764	genome.wustl.edu	37	3	129188193	129188193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_052985.2	+1	reviewed	p.R301H	0.998	325	0%	60	13.3%	5	40%	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_WD40 repeat-like
XRN1	54464	genome.wustl.edu	37	3	142102240	142102240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_019001.3	-1	validated	p.D840N	1.000	278	0%	91	15.4%	0	-	benign(0.017)	tolerated(0.08)	neutral(0.300)	NULL
COMMD2	51122	genome.wustl.edu	37	3	149469121	149469121	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000483708	-1	known	p.H99	0.000	327	0%	88	17%	0	-	-	-	-	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153958170	153958172	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015595.3	+1	validated	p.N702in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PIK3CA	5290	genome.wustl.edu	37	3	178916614	178916614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006218.2	+1	reviewed	p.M1V	1.000	112	0%	27	55.6%	0	-	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952084	178952084	+	Missense_Mutation	SNP	C	C	T	rs121913281		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006218.2	+1	reviewed	p.H1047Y	1.000	281	0%	95	15.8%	12	25%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMSmart_PI3Kc,superfamily_Kinase_like
ATP11B	23200	genome.wustl.edu	37	3	182614511	182614511	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000498086	+1	known	p.A803V	0.979	713	0%	189	12.2%	1	0%	-	-	-	NULL
PIGX	54965	genome.wustl.edu	37	3	196460757	196460757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017861.3	+1	reviewed	p.G213D	0.941	854	0%	284	13%	10	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PPARGC1A	10891	genome.wustl.edu	37	4	23815961	23815961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_013261.3	-1	reviewed	p.G382A	1.000	253	0%	72	34.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
EXOC1	55763	genome.wustl.edu	37	4	56759931	56759931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001024924.1	+1	reviewed	p.N646K	1.000	137	0%	41	17.1%	13	38.4%	possibly_damaging(0.879)	tolerated(0.12)	deleterious(0.603)	HMMPfam_Sec3
PPAT	5471	genome.wustl.edu	37	4	57265530	57265530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002703.3	-1	reviewed	p.R351W	1.000	502	0%	130	12.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pribosyltran,superfamily_PRTase-like
GNRHR	2798	genome.wustl.edu	37	4	68619623	68619623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000406.2	-1	reviewed	p.T144M	0.996	188	0%	48	14.6%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
UGT2B15	7366	genome.wustl.edu	37	4	69512912	69512912	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001076.2	-1	validated	p.C501	0.362	518	0%	341	16.4%	0	-	-	-	-	HMMPfam_UDPGT
SULT1B1	27284	genome.wustl.edu	37	4	70620787	70620787	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014465.3	-1	reviewed	e1+1	1.000	423	0%	123	13.8%	0	-	-	-	-	-
AMTN	401138	genome.wustl.edu	37	4	71396938	71396938	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_212557.2	+1	validated	p.D180	0.130	111	0%	30	20%	0	-	-	-	-	NULL
NPFFR2	10886	genome.wustl.edu	37	4	73013105	73013105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004885.2	+1	reviewed	p.A382V	1.000	146	0%	45	13.3%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CXCL5	6374	genome.wustl.edu	37	4	74863731	74863731	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002994.3	-1	reviewed	p.D108	0.183	366	0%	106	13.2%	24	0%	-	-	-	superfamily_Interleukin 8-like chemokines
SHROOM3	57619	genome.wustl.edu	37	4	77651990	77651990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020859.3	+1	validated	p.W163*	1.000	166	0.6%	21	23.8%	3	33.3%	-	-	-	NULL
CDS1	1040	genome.wustl.edu	37	4	85555013	85555013	+	Missense_Mutation	SNP	G	G	A	rs113432734		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001263.3	+1	reviewed	p.A215T	1.000	277	0%	127	13.4%	6	50%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_CTP_transf_1
GRID2	2895	genome.wustl.edu	37	4	94006429	94006429	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001510.2	+1	validated	p.Y176	1.000	225	0%	41	24.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
HADH	3033	genome.wustl.edu	37	4	108931031	108931031	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005327.4	+1	reviewed	p.A83	1.000	325	0%	122	23%	39	53.8%	-	-	-	HMMPfam_3HCDH_N,superfamily_NAD(P)-binding Rossmann-fold domains
PITX2	5308	genome.wustl.edu	37	4	111539418	111539418	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000325.5	-1	reviewed	p.Y280fs	1.000	-	-	-	-	-	-	-	-	-	NULL
AP1AR	55435	genome.wustl.edu	37	4	113187746	113187747	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018569.4	+1	validated	p.S174fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NDST3	9348	genome.wustl.edu	37	4	119154278	119154278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004784.2	+1	reviewed	p.R644M	1.000	657	0%	155	14.8%	0	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SYNPO2	171024	genome.wustl.edu	37	4	119951567	119951567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_133477.2	+1	validated	p.T546M	0.036	101	1%	28	21.4%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
LARP1B	55132	genome.wustl.edu	37	4	129035883	129035883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018078.2	+1	reviewed	p.P383T	0.850	361	0%	93	22.6%	3	66.6%	benign(0.017)	tolerated(0.4)	neutral(0.017)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143043314	143043314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001101669.1	-1	reviewed	p.S701Y	1.000	446	0%	244	16.4%	10	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
FREM3	166752	genome.wustl.edu	37	4	144620293	144620293	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000329798	-1	known	p.T512	1.000	205	0%	28	14.3%	0	-	-	-	-	NULL
TMEM144	55314	genome.wustl.edu	37	4	159162719	159162720	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018342.4	+1	validated	p.L289fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
CPE	1363	genome.wustl.edu	37	4	166385678	166385678	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001873.2	+1	reviewed	p.S148	0.954	371	0%	141	20.6%	6	0%	-	-	-	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
PALLD	23022	genome.wustl.edu	37	4	169432910	169432910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016081.3	+1	reviewed	p.K85N	0.000	78	0%	20	35%	0	-	benign(0.021)	tolerated(0.05)	neutral(0.346)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379430	186379430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152775.3	-1	validated	p.Y771N	0.271	491	0%	163	14.1%	0	-	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	NULL
CTNND2	1501	genome.wustl.edu	37	5	11082830	11082830	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001332.2	-1	validated	p.D922	0.988	214	0%	62	17.7%	1	0%	-	-	-	superfamily_ARM repeat
SPEF2	79925	genome.wustl.edu	37	5	35697805	35697805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024867.3	+1	validated	p.A684V	1.000	421	0%	143	11.2%	3	33.3%	possibly_damaging(0.907)	deleterious(0.02)	deleterious(0.744)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LIFR	3977	genome.wustl.edu	37	5	38528877	38528877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001127671.1	-1	reviewed	p.P70T	0.023	343	0%	145	13.1%	1	0%	benign(0.195)	tolerated(0.18)	neutral(0.074)	HMMSmart_SM00060,superfamily_Fibronectin type III
GHR	2690	genome.wustl.edu	37	5	42719249	42719249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000163.2	+1	reviewed	p.A547V	0.994	381	0%	67	14.9%	0	-	benign(0.033)	tolerated(0.08)	neutral(0.301)	NULL
PARP8	79668	genome.wustl.edu	37	5	50055550	50055550	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024615.3	+1	validated	p.F86	1.000	410	0%	179	30.2%	3	33.3%	-	-	-	NULL
SKIV2L2	23517	genome.wustl.edu	37	5	54603897	54603897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015360.4	+1	validated	p.T19I	0.001	176	0%	34	23.5%	2	0%	benign(0.116)	tolerated(0.07)	neutral(0.328)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56177811	56177812	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005921.1	+1	validated	p.E928fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75885534	75885534	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006633.2	+1	validated	p.L207	0.996	344	0%	137	26.3%	3	0%	-	-	-	NULL
ERAP2	64167	genome.wustl.edu	37	5	96225014	96225014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000510309	+1	known	p.M325I	1.000	302	0%	100	20%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_SSF55486
WDR36	134430	genome.wustl.edu	37	5	110428150	110428150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_139281.2	+1	reviewed	p.A55V	0.000	68	0%	12	33.3%	1	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
HINT1	3094	genome.wustl.edu	37	5	130498370	130498370	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005340.5	-1	validated	e2-1	1.000	600	0%	238	15.5%	5	60%	-	-	-	-
KDM3B	51780	genome.wustl.edu	37	5	137735575	137735575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016604.3	+1	validated	p.R1025C	1.000	296	0%	110	24.5%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137756527	137756527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016604.3	+1	validated	p.A1283V	1.000	199	0%	78	25.6%	14	57.1%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
TAF7	6879	genome.wustl.edu	37	5	140698694	140698694	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005642.2	-1	reviewed	p.I306	1.000	927	0.1%	208	18.3%	70	15.7%	-	-	-	NULL
ARAP3	64411	genome.wustl.edu	37	5	141051719	141051719	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_022481.5	-1	reviewed	p.P512fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP
PWWP2A	114825	genome.wustl.edu	37	5	159519619	159519619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001130864.1	-1	validated	p.R680W	1.000	197	0%	40	17.5%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
DOCK2	1794	genome.wustl.edu	37	5	169463553	169463553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004946.2	+1	validated	p.Y1220C	1.000	448	0.2%	118	15.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSPAN17	26262	genome.wustl.edu	37	5	176079845	176079847	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012171.1	+1	validated	p.N132in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
RAB24	53917	genome.wustl.edu	37	5	176729812	176729812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001031677.2	-1	validated	p.R69H	1.000	194	0%	13	30.8%	22	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
MAML1	9794	genome.wustl.edu	37	5	179192384	179192384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014757.4	+1	reviewed	p.D125N	0.996	139	0%	43	18.6%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
MAPK9	5601	genome.wustl.edu	37	5	179674460	179674460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002752.4	-1	reviewed	p.V223M	1.000	405	0%	69	33.3%	14	35.7%	possibly_damaging(0.893)	deleterious(0.02)	deleterious(0.735)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TXNDC5	81567	genome.wustl.edu	37	6	7883469	7883469	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_030810.2	-1	reviewed	p.R403	1.000	218	0%	48	12.5%	100	28%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
TXNDC5	81567	genome.wustl.edu	37	6	7904931	7904931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_030810.2	-1	reviewed	p.P97S	1.000	148	0%	42	11.9%	46	19.5%	benign(0.294)	deleterious(0.04)	neutral(0.440)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1
PPP2R5D	5528	genome.wustl.edu	37	6	42975737	42975737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006245.2	+1	reviewed	p.R264H	1.000	382	0%	66	24.2%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56
PKHD1	5314	genome.wustl.edu	37	6	51768802	51768802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_138694.3	-1	reviewed	p.I2283V	0.000	360	0%	158	17.7%	0	-	benign(0)	tolerated(1)	-	superfamily_Pectin lyase-like
NT5E	4907	genome.wustl.edu	37	6	86195018	86195018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002526.2	+1	validated	p.R273W	0.353	428	0%	69	10.1%	57	3.5%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_SSF56300
CCNC	892	genome.wustl.edu	37	6	100009473	100009473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005190.3	-1	reviewed	p.R75M	1.000	284	0%	124	15.3%	8	0%	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
PREP	5550	genome.wustl.edu	37	6	105800937	105800937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002726.3	-1	reviewed	p.R245C	1.000	363	0%	105	21.9%	10	60%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
NR2E1	7101	genome.wustl.edu	37	6	108502144	108502144	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003269.3	+1	validated	p.I291	0.996	240	0%	36	16.7%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RFPL4B	442247	genome.wustl.edu	37	6	112671461	112671461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001013734.2	+1	validated	p.M184T	0.000	156	0%	32	18.8%	0	-	benign(0.07)	deleterious(0.02)	neutral(0.388)	HMMPfam_SPRY
PERP	64065	genome.wustl.edu	37	6	138417630	138417630	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_022121.4	-1	validated	p.A72	0.056	286	0%	78	11.5%	194	20.6%	-	-	-	NULL
SHPRH	257218	genome.wustl.edu	37	6	146240488	146240488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001042683.2	-1	validated	p.H1387R	1.000	292	0%	61	11.5%	0	-	benign(0.226)	tolerated(0.08)	neutral(0.323)	NULL
SASH1	23328	genome.wustl.edu	37	6	148795286	148795286	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015278.3	+1	validated	p.S185	0.972	758	0%	264	17.8%	1	0%	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21744161	21744161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003777.3	+1	reviewed	p.R2135Q	1.000	214	0%	73	17.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CBX3	11335	genome.wustl.edu	37	7	26245999	26245999	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_007276.3	+1	reviewed	p.G12	1.000	527	0%	113	21.2%	37	32.4%	-	-	-	NULL
STK17A	9263	genome.wustl.edu	37	7	43664331	43664331	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004760.2	+1	reviewed	p.G379*	1.000	224	0%	159	19.5%	15	0%	-	-	-	NULL
C7orf57	136288	genome.wustl.edu	37	7	48099823	48099823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001100159.1	+1	validated	p.S281N	0.938	205	0%	74	10.8%	1	0%	benign(0)	tolerated(1)	-	NULL
ZP3	7784	genome.wustl.edu	37	7	76071158	76071158	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001110354.1	+1	reviewed	e8-1	0.966	645	0%	122	13.1%	0	-	-	-	-	-
PHTF2	57157	genome.wustl.edu	37	7	77569392	77569392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001127357.1	+1	validated	p.A471T	1.000	454	0%	196	19.9%	7	0%	benign(0.059)	deleterious(0.02)	neutral(0.387)	NULL
PCLO	27445	genome.wustl.edu	37	7	82595341	82595341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_033026.5	-1	validated	p.S1255P	0.000	1174	0%	328	15.9%	0	-	benign(0.065)	-	-	NULL
CDK14	5218	genome.wustl.edu	37	7	90741976	90741976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012395.2	+1	validated	p.R407Q	1.000	73	0%	29	27.6%	1	0%	benign(0.365)	tolerated(0.47)	neutral(0.127)	superfamily_Protein kinase-like (PK-like)
PEX1	5189	genome.wustl.edu	37	7	92130901	92130901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000466.2	-1	reviewed	p.R835G	0.853	292	0%	78	29.5%	8	25%	benign(0.005)	tolerated(0.12)	neutral(0.261)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SAMD9L	219285	genome.wustl.edu	37	7	92763809	92763809	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152703.2	-1	validated	p.Q492	0.923	193	0%	118	16.1%	2	0%	-	-	-	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103061836	103061836	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_198999.2	-1	reviewed	p.I42	0.625	489	0%	148	20.3%	0	-	-	-	-	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105254667	105254667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020725.1	-1	validated	p.N705fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105278904	105278904	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020725.1	-1	validated	p.S366	0.000	585	0%	83	13.3%	1	100%	-	-	-	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138602319	138602319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020910.2	-1	validated	p.L635V	0.003	133	0%	35	17.1%	0	-	benign(0)	tolerated(1)	-	NULL
ANGPT2	285	genome.wustl.edu	37	8	6366553	6366553	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001147.2	-1	reviewed	p.A410	0.998	751	0%	118	14.4%	6	0%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
DLC1	10395	genome.wustl.edu	37	8	12943906	12943906	+	Silent	SNP	G	G	A	rs141467403	by1000genomes	TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_182643.2	-1	reviewed	p.R1453	0.754	365	0%	41	17.1%	1	100%	-	-	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
CHD7	55636	genome.wustl.edu	37	8	61765694	61765694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017780.2	+1	reviewed	p.A2137V	0.215	231	0%	39	10.3%	2	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
ADHFE1	137872	genome.wustl.edu	37	8	67356974	67356974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_144650.2	+1	validated	p.T115M	1.000	502	0%	221	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fe-ADH,superfamily_Dehydroquinate synthase-like
TRPA1	8989	genome.wustl.edu	37	8	72975102	72975102	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_007332.2	-1	reviewed	p.V247fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
VPS13B	157680	genome.wustl.edu	37	8	100866268	100866268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017890.3	+1	reviewed	p.A3576T	0.998	168	0%	63	23.8%	2	100%	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	NULL
TM7SF4	81501	genome.wustl.edu	37	8	105361633	105361633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_030788.2	+1	reviewed	p.P285S	0.021	261	0%	74	16.2%	0	-	possibly_damaging(0.677)	tolerated(0.42)	neutral(0.255)	HMMPfam_DC_STAMP
ATAD2	29028	genome.wustl.edu	37	8	124371905	124371905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014109.3	-1	reviewed	p.R393Q	0.869	329	0%	149	16.8%	1	0%	possibly_damaging(0.648)	deleterious(0.02)	deleterious(0.611)	NULL
KIAA0196	9897	genome.wustl.edu	37	8	126091111	126091111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014846.3	-1	reviewed	p.G194C	1.000	435	0.2%	66	12.1%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Strumpellin
FAM135B	51059	genome.wustl.edu	37	8	139263192	139263192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015912.3	-1	validated	p.R145Q	0.220	124	0%	20	30%	0	-	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	NULL
KANK1	23189	genome.wustl.edu	37	9	712394	712397	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AAAC	AAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015158.2	+1	reviewed	p.N545fs	0.247:0.002:0.008:0.009	-	-	-	-	-	-	-	-	-	superfamily_ANK
SMARCA2	6595	genome.wustl.edu	37	9	2054609	2054609	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003070.3	+1	reviewed	p.R353	0.981	395	0.3%	82	18.3%	4	50%	-	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5921380	5921380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001017969.2	-1	validated	p.Y1539F	1.000	555	0%	225	17.3%	3	0%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
HINT2	84681	genome.wustl.edu	37	9	35813449	35813451	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032593.2	-1	validated	p.E106in_frame_del	1.000:1.000:0.460	-	-	-	-	-	-	-	-	-	HMMPfam_HIT,superfamily_HIT-like
RECK	8434	genome.wustl.edu	37	9	36063867	36063867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_021111.2	+1	reviewed	p.A116V	1.000	399	0%	99	18.2%	2	0%	probably_damaging(0.954)	tolerated(0.43)	neutral(0.411)	NULL
ZNF658	26149	genome.wustl.edu	37	9	40772690	40772690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_033160.5	-1	validated	p.T862M	0.003	353	0%	88	12.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GKAP1	80318	genome.wustl.edu	37	9	86357453	86357453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_025211.3	-1	reviewed	p.T323A	0.998	505	0.2%	173	12.1%	4	25%	possibly_damaging(0.601)	deleterious(0.01)	deleterious(0.614)	NULL
TEX10	54881	genome.wustl.edu	37	9	103109290	103109290	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017746.3	-1	validated	p.Q193	1.000	307	0%	72	13.9%	1	0%	-	-	-	NULL
MUSK	4593	genome.wustl.edu	37	9	113530130	113530130	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005592.3	+1	reviewed	p.C317	1.000	194	0%	87	27.6%	0	-	-	-	-	HMMPfam_Fz
COL27A1	85301	genome.wustl.edu	37	9	116940571	116940571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032888.2	+1	validated	p.G637S	1.000	497	0%	63	12.7%	1	0%	unknown(0)	-	-	HMMPfam_Collagen
PAPPA	5069	genome.wustl.edu	37	9	119065167	119065167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002581.3	+1	reviewed	p.V1029I	0.999	220	0%	71	25.4%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	superfamily_SSF55486
RC3H2	54542	genome.wustl.edu	37	9	125613437	125613437	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000454740	-1	known	p.M160T	1.000	389	0%	108	31.5%	3	0%	-	-	-	NULL
PPP6C	5537	genome.wustl.edu	37	9	127916213	127916213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001123355.1	-1	reviewed	p.K181T	1.000	577	0%	223	17.9%	26	19.2%	benign(0.088)	deleterious(0.02)	neutral(0.390)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
PBX3	5090	genome.wustl.edu	37	9	128725340	128725340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006195.5	+1	validated	p.G391D	1.000	519	0%	135	12.6%	2	0%	possibly_damaging(0.877)	deleterious(0.04)	deleterious(0.691)	NULL
STXBP1	6812	genome.wustl.edu	37	9	130430417	130430417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003165.3	+1	reviewed	p.D285Y	1.000	92	0%	17	29.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
COQ4	51117	genome.wustl.edu	37	9	131094487	131094487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016035.3	+1	validated	p.A153V	0.996	136	0%	15	26.7%	62	27.4%	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	HMMPfam_Coq4
NUP214	8021	genome.wustl.edu	37	9	134026055	134026055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005085.2	+1	reviewed	p.A727V	1.000	321	0%	72	15.3%	1	0%	possibly_damaging(0.949)	tolerated(0.97)	neutral(0.393)	NULL
PRTFDC1	56952	genome.wustl.edu	37	10	25145905	25145905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020200.5	-1	provisional	p.R148M	0.999	912	0%	455	11%	0	-	benign(0.012)	deleterious(0.04)	neutral(0.349)	HMMPfam_Pribosyltran,superfamily_PRTase-like
PCDH15	65217	genome.wustl.edu	37	10	55913032	55913032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001142763.1	-1	reviewed	p.E543K	1.000	289	0%	79	13.9%	0	-	probably_damaging(0.96)	tolerated(0.86)	neutral(0.404)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HERC4	26091	genome.wustl.edu	37	10	69714452	69714452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_022079.2	-1	validated	p.R754H	1.000	403	0%	138	17.4%	7	28.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
KAT6B	23522	genome.wustl.edu	37	10	76781756	76781756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012330.2	+1	validated	p.H1047Y	1.000	250	0%	45	26.7%	3	0%	possibly_damaging(0.499)	tolerated(0.53)	neutral(0.174)	NULL
PTEN	5728	genome.wustl.edu	37	10	89653795	89653795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000371953	+1	known	p.N31K	1.000	669	0%	367	28.1%	8	25%	benign(0.041)	tolerated(0.14)	neutral(0.252)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89712013	89712014	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000371953	+1	known	p.C211fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720786	89720786	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000371953	+1	known	p.K313fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
DNTT	1791	genome.wustl.edu	37	10	98064404	98064404	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004088.3	+1	reviewed	p.A50	0.835	157	0%	26	38.5%	0	-	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
PGAM1	5223	genome.wustl.edu	37	10	99190263	99190263	+	Silent	SNP	G	G	A	rs55712240	byCluster	TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002629.2	+1	provisional	p.E89	1.000	244	0%	78	9%	31	3.2%	-	-	-	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
C10orf137	26098	genome.wustl.edu	37	10	127429207	127429207	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015608.2	+1	validated	p.A685	0.391	301	0%	115	27%	4	0%	-	-	-	NULL
MUC2	4583	genome.wustl.edu	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002457.2	+1	reviewed	p.T1568M	0.006	5489	2.4%	75	9.3%	2	0%	unknown(0)	-	-	NULL
OR52B4	143496	genome.wustl.edu	37	11	4389363	4389363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005161.3	-1	validated	p.R55C	0.000	209	0%	80	17.5%	0	-	benign(0.015)	tolerated(0.07)	neutral(0.320)	HMMPfam_7tm_1,superfamily_SSF81321
OR5P3	120066	genome.wustl.edu	37	11	7846752	7846752	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_153445.1	-1	provisional	p.T256	0.035	401	0%	95	13.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TUB	7275	genome.wustl.edu	37	11	8119342	8119342	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003320.4	+1	reviewed	p.R378*	1.000	251	0%	57	22.8%	0	-	-	-	-	HMMPfam_Tub,superfamily_Tubby_C
KIF18A	81930	genome.wustl.edu	37	11	28083990	28083991	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_031217.3	-1	validated	p.M555fs	0.984:0.983	-	-	-	-	-	-	-	-	-	NULL
API5	8539	genome.wustl.edu	37	11	43348099	43348099	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001142930.1	+1	validated	p.Q265*	1.000	447	0%	113	16.8%	7	0%	-	-	-	HMMPfam_API5,superfamily_ARM-type_fold
ALKBH3	221120	genome.wustl.edu	37	11	43923243	43923243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_139178.3	+1	validated	p.R213C	0.998	193	0%	36	33.3%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46782302	46782304	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001008938.1	-1	validated	p.E1418in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
OR5M8	219484	genome.wustl.edu	37	11	56258124	56258124	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005282.1	-1	provisional	p.G241	0.050	164	0%	59	37.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AR1	219493	genome.wustl.edu	37	11	56431376	56431376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001004730.1	+1	provisional	p.G72A	0.998	555	0%	186	24.7%	0	-	benign(0.206)	deleterious(0.02)	neutral(0.403)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59225149	59225149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001004708.1	+1	provisional	p.T239M	1.000	231	0%	67	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
C11orf9	745	genome.wustl.edu	37	11	61548760	61548760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001127392.1	+1	validated	p.H908R	0.002	353	0%	17	23.5%	4	25%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
FLRT1	23769	genome.wustl.edu	37	11	63885513	63885513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_013280.4	+1	reviewed	p.R592W	1.000	45	0.000	5	0.800	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
RBM14	10432	genome.wustl.edu	37	11	66393997	66393997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006328.3	+1	validated	p.S623L	1.000	126	0%	19	21.1%	53	20.7%	unknown(0)	deleterious(0.01)	-	NULL
INPPL1	3636	genome.wustl.edu	37	11	71940250	71940250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001567.3	+1	reviewed	p.A212V	0.096	77	0%	19	26.3%	18	33.3%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
RNF169	254225	genome.wustl.edu	37	11	74546892	74546892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001098638.1	+1	validated	p.N415I	0.358	213	0%	40	17.5%	1	100%	possibly_damaging(0.69)	deleterious(0.02)	deleterious(0.630)	NULL
OR2AT4	341152	genome.wustl.edu	37	11	74799997	74799997	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005285.1	-1	provisional	p.G254	1.000	174	0%	18	22.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC89	220388	genome.wustl.edu	37	11	85396997	85396999	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152723.1	-1	provisional	p.E59in_frame_del	0.995:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000223709	0	genome.wustl.edu	37	11	89796016	89796016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000436580	-1	known	p.R50C	0.028	274	0%	34	14.7%	0	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
FOLR4	390243	genome.wustl.edu	37	11	94040442	94040442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001080486.1	+1	provisional	p.R147C	0.940	477	0%	159	15.1%	0	-	possibly_damaging(0.598)	tolerated(0.15)	neutral(0.448)	HMMPfam_Folate_rec
ATM	472	genome.wustl.edu	37	11	108128277	108128277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000051.3	+1	reviewed	p.G774C	0.856	385	0.3%	111	15.3%	1	0%	benign(0.11)	tolerated(0.09)	neutral(0.305)	superfamily_ARM repeat
ROBO4	54538	genome.wustl.edu	37	11	124766201	124766201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_019055.5	-1	validated	p.S191F	0.472	157	0%	30	33.3%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GLB1L2	89944	genome.wustl.edu	37	11	134238603	134238603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_138342.3	+1	validated	p.G319R	0.998	150	0%	32	15.6%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat
SLC6A13	6540	genome.wustl.edu	37	12	369056	369056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016615.2	-1	provisional	p.V55I	1.000	274	0.7%	59	30.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_SNF
CACNA1C	775	genome.wustl.edu	37	12	2719827	2719827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_199460.2	+1	reviewed	p.V1247I	0.999	192	0%	48	25%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	superfamily_Voltage-gated potassium channels
RAD51AP1	10635	genome.wustl.edu	37	12	4653047	4653047	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001130862.1	+1	validated	p.V62	0.001	287	0%	81	30.9%	2	50%	-	-	-	NULL
ATN1	1822	genome.wustl.edu	37	12	7045891	7045892	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001007026.1	+1	reviewed	p.491in_frame_insQ	0.002:0.834	-	-	-	-	-	-	-	-	-	HMMPfam_Atrophin-1
ATF7IP	55729	genome.wustl.edu	37	12	14577331	14577331	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018179.3	+1	validated	p.S161C	0.127	246	0%	55	16.4%	4	100%	unknown(0)	deleterious(0.02)	-	NULL
ACVR1B	91	genome.wustl.edu	37	12	52380888	52380888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020328.2	+1	reviewed	p.L475F	0.000	1292	0%	360	22.2%	1	100%	unknown(0)	-	-	NULL
KRT72	140807	genome.wustl.edu	37	12	52992736	52992736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_080747.2	-1	reviewed	p.R196M	1.000	613	0.2%	185	11.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Filament
C12orf10	60314	genome.wustl.edu	37	12	53696883	53696883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_021640.3	+1	validated	p.A132V	0.998	215	0%	26	15.4%	27	7.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_UPF0160
NCKAP1L	3071	genome.wustl.edu	37	12	54914515	54914515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005337.4	+1	reviewed	p.T555A	1.000	666	0%	242	16.9%	8	0%	benign(0.393)	deleterious(0.01)	deleterious(0.532)	HMMPfam_Nckap1
OR6C68	403284	genome.wustl.edu	37	12	55886725	55886725	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005519.1	+1	provisional	p.S193	1.000	423	0%	181	21.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYL6B	140465	genome.wustl.edu	37	12	56551277	56551277	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002475.3	+1	reviewed	p.V182	1.000	526	0%	104	17.3%	185	30.2%	-	-	-	superfamily_SSF47473
BAZ2A	11176	genome.wustl.edu	37	12	57004272	57004272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_013449.3	-1	validated	p.G569D	1.000	136	0%	29	55.2%	3	66.6%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
RASSF9	9182	genome.wustl.edu	37	12	86229955	86229955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005447.3	-1	reviewed	p.L9I	0.990	599	0%	79	13.9%	2	0%	possibly_damaging(0.586)	deleterious(0)	deleterious(0.647)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100480137	100480137	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015054.1	-1	validated	e9-1	1.000	132	0%	61	13.1%	0	-	-	-	-	-
SLC41A2	84102	genome.wustl.edu	37	12	105238260	105238260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032148.3	-1	validated	p.A509V	1.000	222	0%	83	16.9%	5	20%	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	HMMPfam_MgtE
PWP1	11137	genome.wustl.edu	37	12	108102922	108102922	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_007062.1	+1	provisional	p.L401	0.809	283	0%	94	34%	47	36.1%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
MVK	4598	genome.wustl.edu	37	12	110019245	110019245	+	Silent	SNP	C	C	T	rs104895373		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000431.2	+1	reviewed	p.P139	0.000	92	0%	24	25%	5	0%	-	-	-	PatternScan_GHMP_KINASES_ATP,HMMPfam_GHMP_kinases_N,superfamily_Ribosomal protein S5 domain 2-like
C12orf76	400073	genome.wustl.edu	37	12	110496817	110496817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_207435.1	-1	predicted	p.T56I	0.005	271	0%	209	20.6%	0	-	unknown(0)	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116429451	116429452	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015335.3	-1	validated	p.I1103fs	0.961:0.951	-	-	-	-	-	-	-	-	-	NULL
DDX55	57696	genome.wustl.edu	37	12	124103201	124103202	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000354291	+1	known	p.V411fs	0.006:0.005	-	-	-	-	-	-	-	-	-	NULL
NCOR2	9612	genome.wustl.edu	37	12	124887004	124887004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006312.3	-1	validated	p.A529V	0.934	349	0%	62	19.4%	3	33.3%	unknown(0)	tolerated(0.22)	-	NULL
UBC	7316	genome.wustl.edu	37	12	125396313	125396315	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_021009.4	-1	validated	p.N668in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
GPR133	283383	genome.wustl.edu	37	12	131622686	131622686	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_198827.3	+1	validated	p.R814T	1.000	69	0%	10	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLE	5426	genome.wustl.edu	37	12	133248899	133248899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006231.2	-1	validated	p.A566T	1.000	142	0%	54	27.8%	7	28.5%	possibly_damaging(0.521)	deleterious(0.03)	deleterious(0.540)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
XPO4	64328	genome.wustl.edu	37	13	21361121	21361121	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_022459.4	-1	validated	p.L1081	0.556	160	0%	50	18%	3	0%	-	-	-	superfamily_ARM-type_fold
SKA3	221150	genome.wustl.edu	37	13	21742300	21742300	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000314759	-1	known	p.T190	0.002	1012	0.1%	321	32.7%	6	66.6%	-	-	-	NULL
CDK8	1024	genome.wustl.edu	37	13	26975440	26975440	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001260.1	+1	reviewed	p.R356*	1.000	1103	0%	371	10.5%	3	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
PDS5B	23047	genome.wustl.edu	37	13	33233387	33233387	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015032.3	+1	reviewed	p.T198	0.975	632	0%	288	12.8%	0	-	-	-	-	superfamily_ARM repeat
PDS5B	23047	genome.wustl.edu	37	13	33275548	33275548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015032.3	+1	reviewed	p.P610L	1.000	281	0%	73	17.8%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
DNAJC15	29103	genome.wustl.edu	37	13	43659961	43659961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_013238.2	+1	validated	p.N123K	1.000	325	0%	67	19.4%	82	32.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
WDFY2	115825	genome.wustl.edu	37	13	52325537	52325537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_052950.3	+1	reviewed	p.V273M	0.998	386	0%	40	25%	13	38.4%	possibly_damaging(0.887)	tolerated(0.06)	deleterious(0.669)	superfamily_FYVE/PHD zinc finger,superfamily_WD40 repeat-like
ATP7B	540	genome.wustl.edu	37	13	52542742	52542742	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000053.2	-1	reviewed	p.G515	0.066	239	0.4%	39	25.6%	1	100%	-	-	-	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
PIBF1	10464	genome.wustl.edu	37	13	73401175	73401175	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006346.2	+1	validated	p.V278	0.000	321	0%	176	13.6%	6	33.3%	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76415307	76415308	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015842.2	+1	reviewed	p.N986fs	0.016:0.998	-	-	-	-	-	-	-	-	-	NULL
ANG	283	genome.wustl.edu	37	14	21161742	21161742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001097577.2	+1	reviewed	p.V7I	0.001	728	0%	154	18.8%	14	0%	unknown(0)	tolerated(0.91)	-	NULL
NDRG2	57447	genome.wustl.edu	37	14	21486183	21486183	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_201535.1	-1	reviewed	p.T304	0.055	350	0%	87	25.3%	82	39%	-	-	-	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
DHRS4L2	317749	genome.wustl.edu	37	14	24475202	24475202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000382755	+1	known	p.R256H	0.998	297	0%	61	13.1%	36	16.6%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	NULL
ENSG00000250370	0	genome.wustl.edu	37	14	31354951	31354951	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000503907	-1	known	NULL	0.006	353	0%	70	25.7%	0	-	-	-	-	-
ARHGAP5	394	genome.wustl.edu	37	14	32623975	32623975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001030055.1	+1	reviewed	p.Q1444K	1.000	348	0.3%	93	28%	8	37.5%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CTAGE5	4253	genome.wustl.edu	37	14	39817956	39817956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005930.3	+1	validated	p.V675M	0.964	667	0%	374	11.2%	64	28.1%	benign(0.252)	deleterious(0.03)	neutral(0.391)	NULL
NIN	51199	genome.wustl.edu	37	14	51233103	51233103	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020921.3	-1	reviewed	p.L519	0.905	386	0.3%	79	16.5%	6	16.6%	-	-	-	NULL
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529352	55529352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_144578.3	+1	validated	p.P12R	1.000	131	0%	28	35.7%	27	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DACT1	51339	genome.wustl.edu	37	14	59105202	59105202	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016651.5	+1	validated	p.A94	0.966	50	0%	18	27.8%	0	-	-	-	-	NULL
PLEK2	26499	genome.wustl.edu	37	14	67857412	67857412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016445.1	-1	provisional	p.P275T	0.998	283	0.7%	75	10.7%	13	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
IGHV3-43	28426	genome.wustl.edu	37	14	106926622	106926622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000434710	-1	known	p.V8D	0.033	848	0%	355	16.9%	4	0%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
STARD9	57519	genome.wustl.edu	37	15	42976894	42976894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	XM_001129482.3	+1	model	p.A992T	0.012	283	0%	26	30.8%	1	0%	probably_damaging(0.99)	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51787283	51787283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015263.3	-1	validated	p.R1574H	1.000	301	0%	106	23.6%	0	-	unknown(0)	deleterious(0)	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63966867	63966867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003922.3	-1	reviewed	p.Q2507R	1.000	213	0%	53	15.1%	1	0%	possibly_damaging(0.916)	-	-	NULL
MEGF11	84465	genome.wustl.edu	37	15	66386797	66386797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032445.2	-1	validated	p.V113I	0.998	46	0%	24	20.8%	0	-	benign(0.037)	tolerated(0.73)	neutral(0.004)	HMMSmart_SM00181,superfamily_EGF/Laminin
RPL4	6124	genome.wustl.edu	37	15	66795458	66795458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000968.2	-1	reviewed	p.A74T	1.000	135	0%	34	26.5%	839	25.1%	possibly_damaging(0.854)	deleterious(0.04)	deleterious(0.678)	HMMPfam_Ribosomal_L4,superfamily_Ribosomal protein L4
RASGRF1	5923	genome.wustl.edu	37	15	79324604	79324604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002891.4	-1	reviewed	p.R338H	1.000	197	0%	25	28%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
IL16	3603	genome.wustl.edu	37	15	81592162	81592164	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_172217.3	+1	reviewed	p.S836in_frame_del	0.001:0.004:0.009	-	-	-	-	-	-	-	-	-	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82512113	82512113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024580.5	-1	validated	p.Q497H	0.807	342	0%	140	17.9%	10	40%	possibly_damaging(0.943)	deleterious(0.03)	deleterious(0.752)	superfamily_Translation proteins
ABHD2	11057	genome.wustl.edu	37	15	89738582	89738582	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_007011.7	+1	reviewed	p.N402	0.784	233	0%	31	19.4%	16	12.5%	-	-	-	superfamily_SSF53474
TTLL13	440307	genome.wustl.edu	37	15	90800404	90800404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001029964.2	+1	validated	p.R247Q	1.000	261	0%	27	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TTL,superfamily_SSF56059
CERS3	204219	genome.wustl.edu	37	15	101024831	101024831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_178842.3	-1	validated	p.R111C	1.000	289	0.3%	75	13.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ATP6V0C	527	genome.wustl.edu	37	16	2569655	2569655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001694.2	+1	reviewed	p.R126Q	0.989	79	0%	15	26.7%	281	37.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_ATP-synt_C,superfamily_ATPase_F0/V0_c
MYH11	4629	genome.wustl.edu	37	16	15844027	15844027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001040114.1	-1	reviewed	p.V683M	1.000	167	0%	16	25%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
ABCC1	4363	genome.wustl.edu	37	16	16108475	16108475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004996.3	+1	reviewed	p.A160V	1.000	274	0%	101	16.8%	1	100%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
UMOD	7369	genome.wustl.edu	37	16	20357585	20357585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001008389.1	-1	reviewed	p.L349M	1.000	121	0%	29	62.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ITGAL	3683	genome.wustl.edu	37	16	30521709	30521709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002209.2	+1	reviewed	p.E846K	1.000	352	0%	62	11.3%	4	0%	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ENSG00000247487	0	genome.wustl.edu	37	16	48381303	48381304	+	RNA	DEL	TT	TT	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000501305	-1	known	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
CNOT1	23019	genome.wustl.edu	37	16	58608966	58608966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016284.3	-1	validated	p.R591H	1.000	342	0.3%	130	14.6%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67399260	67399260	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018296.5	+1	validated	e7+2	1.000	487	0%	119	11.8%	0	-	-	-	-	-
CTCF	10664	genome.wustl.edu	37	16	67663367	67663367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006565.2	+1	reviewed	p.E590*	1.000	719	0%	253	16.6%	13	7.6%	-	-	-	NULL
AARS	16	genome.wustl.edu	37	16	70305779	70305779	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001605.2	-1	reviewed	p.Y192	0.997	138	0%	28	39.3%	36	38.8%	-	-	-	HMMPfam_tRNA-synt_2c,superfamily_SSF55681
ZNF23	7571	genome.wustl.edu	37	16	71482575	71482575	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_145911.1	-1	provisional	p.N451	0.106	309	0%	162	12.3%	10	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ATXN1L	342371	genome.wustl.edu	37	16	71883981	71883981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001137675.2	+1	validated	p.A113V	1.000	318	0%	79	12.7%	0	-	possibly_damaging(0.647)	tolerated(0.09)	deleterious(0.523)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71964002	71964002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000335106	-1	known	p.V1669I	1.000	582	0.2%	144	24.3%	1	0%	-	-	-	HMMPfam_Ion_trans
ZFHX3	463	genome.wustl.edu	37	16	72827658	72827658	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006885.3	-1	reviewed	p.E2975*	1.000	275	0%	69	33.3%	1	100%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
FBXO31	79791	genome.wustl.edu	37	16	87376498	87376498	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_024735.3	-1	validated	p.S239	0.032	140	0%	25	32%	10	40%	-	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89350595	89350595	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_013275.4	-1	validated	p.D785	0.935	241	0%	63	19%	2	50%	-	-	-	superfamily_Ankyrin repeat
GAS8	2622	genome.wustl.edu	37	16	90104183	90104183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001481.2	+1	reviewed	p.R313H	1.000	396	0%	55	23.6%	16	12.5%	benign(0.364)	tolerated(0.1)	neutral(0.402)	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4080534	4080534	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_016376.3	-1	validated	p.L889	1.000	388	0%	56	17.9%	3	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ALOX12	239	genome.wustl.edu	37	17	6905083	6905083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000697.2	+1	validated	p.A372T	0.910	203	0%	65	29.2%	1	100%	benign(0.018)	tolerated(0.3)	neutral(0.029)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
CHD3	1107	genome.wustl.edu	37	17	7810214	7810214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001005271.2	+1	reviewed	p.R1570C	1.000	130	0%	64	14.1%	46	26%	probably_damaging(0.988)	-	-	HMMPfam_DUF1086
MYH8	4626	genome.wustl.edu	37	17	10300257	10300257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002472.2	-1	reviewed	p.A1409S	1.000	333	0.3%	70	14.3%	0	-	benign(0.006)	tolerated(0.22)	neutral(0.042)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10358949	10358949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017533.2	-1	validated	p.Y719C	1.000	360	0%	69	11.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
PHF12	57649	genome.wustl.edu	37	17	27239531	27239531	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001033561.1	-1	validated	p.N686	1.000	166	0%	23	17.4%	20	25%	-	-	-	NULL
OMG	4974	genome.wustl.edu	37	17	29623149	29623149	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002544.4	-1	validated	p.F67L	0.998	543	0%	338	17.8%	0	-	benign(0.025)	tolerated(0.94)	neutral(0.001)	superfamily_SSF52058
RAB11FIP4	84440	genome.wustl.edu	37	17	29854926	29854927	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032932.3	+1	validated	p.K449fs	0.989:1.000	-	-	-	-	-	-	-	-	-	NULL
RHBDL3	162494	genome.wustl.edu	37	17	30611707	30611708	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_138328.2	+1	validated	p.T56fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF47473
NLE1	54475	genome.wustl.edu	37	17	33463460	33463460	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000436188	-1	known	p.S75*	1.000	144	0%	17	35.3%	10	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
UNC45B	146862	genome.wustl.edu	37	17	33504092	33504092	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_173167.2	+1	validated	p.H696	1.000	216	0%	59	25.4%	0	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
MYO19	80179	genome.wustl.edu	37	17	34869254	34869254	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001033580.2	-1	validated	p.T304	0.000	524	0%	40	12.5%	6	16.6%	-	-	-	HMMSmart_MYSc
TOP2A	7153	genome.wustl.edu	37	17	38569116	38569116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001067.2	-1	reviewed	p.M228I	1.000	468	0%	188	11.7%	8	12.5%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMSmart_SM00433,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
KRT31	3881	genome.wustl.edu	37	17	39553196	39553196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002277.2	-1	reviewed	p.A134T	1.000	472	0%	47	19.1%	1	100%	benign(0.016)	tolerated(0.11)	neutral(0.272)	HMMPfam_Filament
CNTNAP1	8506	genome.wustl.edu	37	17	40840602	40840602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_003632.2	+1	reviewed	p.R477W	0.999	240	0.4%	48	14.6%	1	0%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
HDAC5	10014	genome.wustl.edu	37	17	42170497	42170497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001015053.1	-1	reviewed	p.G203S	1.000	257	0%	20	20%	12	33.3%	probably_damaging(0.971)	tolerated(0.16)	deleterious(0.472)	NULL
ITGA3	3675	genome.wustl.edu	37	17	48166490	48166490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005501.2	+1	reviewed	p.R1021Q	1.000	264	0%	45	11.1%	17	11.7%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
STXBP4	252983	genome.wustl.edu	37	17	53237192	53237192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_178509.5	+1	validated	p.V528M	0.960	357	0%	149	26.8%	4	25%	possibly_damaging(0.781)	tolerated(0.12)	deleterious(0.553)	HMMSmart_SM00456,superfamily_WW domain
BZRAP1	9256	genome.wustl.edu	37	17	56405069	56405069	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004758.2	-1	validated	p.P71	0.000	109	0%	12	50%	1	0%	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60038436	60038436	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005121.2	-1	reviewed	p.R1758*	1.000	440	0%	111	14.4%	1	0%	-	-	-	HMMPfam_TRAP_240kDa
SEC14L1	6397	genome.wustl.edu	37	17	75192332	75192332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001039573.2	+1	reviewed	p.P253L	0.998	210	0%	63	22.2%	12	33.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
C18orf34	374864	genome.wustl.edu	37	18	30950109	30950109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001105528.1	-1	validated	p.S85G	0.963	271	0%	120	15.8%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
CCDC68	80323	genome.wustl.edu	37	18	52604148	52604148	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001143829.1	-1	validated	p.N129	0.957	677	0%	116	13.8%	0	-	-	-	-	NULL
RTTN	25914	genome.wustl.edu	37	18	67684647	67684647	+	Silent	SNP	A	A	C	rs141934309	by1000genomes	TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_173630.3	-1	validated	p.A2139	0.890	200	0%	176	10.8%	10	20%	-	-	-	superfamily_ARM repeat
RTTN	25914	genome.wustl.edu	37	18	67860596	67860596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_173630.3	-1	validated	p.R312Q	1.000	262	0%	94	17%	1	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_ARM repeat
LRG1	116844	genome.wustl.edu	37	19	4538383	4538383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_052972.2	-1	validated	p.P205S	0.000	259	0%	25	20%	45	31.1%	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
PCP2	126006	genome.wustl.edu	37	19	7696628	7696628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_174895.1	-1	provisional	p.A120T	0.244	95	0%	10	40%	10	50%	probably_damaging(0.955)	tolerated(0.16)	neutral(0.458)	NULL
COL5A3	50509	genome.wustl.edu	37	19	10087907	10087907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_015719.3	-1	reviewed	p.A1096T	0.594	204	0%	66	13.6%	0	-	possibly_damaging(0.609)	tolerated(0.53)	neutral(0.218)	HMMPfam_Collagen
DNMT1	1786	genome.wustl.edu	37	19	10273406	10273406	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001130823.1	-1	reviewed	p.P315	0.116	995	0.1%	174	25.9%	13	30.7%	-	-	-	NULL
AP1M2	10053	genome.wustl.edu	37	19	10689588	10689588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_005498.4	-1	reviewed	p.R290C	1.000	269	0%	62	14.5%	112	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
MAST1	22983	genome.wustl.edu	37	19	12976255	12976255	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014975.2	+1	validated	p.F588	0.970	229	0%	18	27.8%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
IL27RA	9466	genome.wustl.edu	37	19	14162734	14162734	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004843.2	+1	reviewed	p.W555*	1.000	99	0%	24	25%	7	28.5%	-	-	-	NULL
NWD1	284434	genome.wustl.edu	37	19	16870199	16870199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001007525.2	+1	validated	p.R510W	0.967	72	0%	25	36%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCAN	1463	genome.wustl.edu	37	19	19360627	19360627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004386.2	+1	validated	p.H1291Q	1.000	1410	0%	292	13.7%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
ZNF714	148206	genome.wustl.edu	37	19	21300605	21300605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000291770	+1	known	p.H379N	0.002	85	0%	35	11.4%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAG	4099	genome.wustl.edu	37	19	35786682	35786682	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002361.2	+1	reviewed	p.P71	0.111	65	0%	14	35.7%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ATP4A	495	genome.wustl.edu	37	19	36049367	36049367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000704.2	-1	reviewed	p.A466V	1.000	124	0%	51	13.7%	0	-	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
MLL4	9757	genome.wustl.edu	37	19	36228800	36228800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014727.1	+1	reviewed	p.R2567C	1.000	320	0.3%	62	19.4%	21	47.6%	probably_damaging(0.99)	-	-	superfamily_SET domain
ZNF540	163255	genome.wustl.edu	37	19	38103212	38103212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_152606.3	+1	validated	p.R344H	0.000	305	0.7%	56	12.5%	2	0%	possibly_damaging(0.534)	tolerated(0.22)	neutral(0.223)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PSMC4	5704	genome.wustl.edu	37	19	40485823	40485823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006503.2	+1	reviewed	p.A258V	1.000	225	0%	74	21.6%	98	24.4%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000198251	0	genome.wustl.edu	37	19	41416487	41416487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000359667	-1	known	p.G39S	0.993	160	0%	71	9.9%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_p450,superfamily_Cytochrome_P450
PSG3	5671	genome.wustl.edu	37	19	43243179	43243179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_021016.3	-1	validated	p.T43A	0.000	1144	0%	555	31.2%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SRRM5	100170229	genome.wustl.edu	37	19	44118224	44118224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001145641.1	+1	validated	p.D651N	0.000	322	0%	94	13.8%	0	-	possibly_damaging(0.67)	tolerated(0.58)	neutral(0.242)	NULL
ZNF226	7769	genome.wustl.edu	37	19	44681655	44681655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001032372.1	+1	validated	p.R747Q	0.724	643	0%	199	17.6%	8	37.5%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MARK4	57787	genome.wustl.edu	37	19	45781245	45781245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_031417.2	+1	provisional	p.E284V	1.000	235	0%	33	12.1%	5	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SYMPK	8189	genome.wustl.edu	37	19	46351243	46351243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004819.2	-1	reviewed	p.R148L	0.988	111	0%	21	38.1%	23	52.1%	benign(0.073)	tolerated(0.13)	neutral(0.258)	superfamily_ARM repeat
CCDC61	729440	genome.wustl.edu	37	19	46506338	46506338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001080402.1	+1	provisional	p.R78Q	1.000	328	0%	51	35.3%	21	33.3%	benign(0.287)	tolerated(0.6)	neutral(0.093)	NULL
LOC100287311	100287311	genome.wustl.edu	37	19	47823040	47823042	+	Splice_Site	DEL	CTC	CTC	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	XM_002343688.1	-1	model	e3-1	0.000:0.000:0.006	-	-	-	-	-	-	-	-	-	-
RPL18	6141	genome.wustl.edu	37	19	49119901	49119905	+	Frame_Shift_Del	DEL	CAGCA	CAGCA	-	rs111332848		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	CAGCA	CAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000450952	-1	known	p.V125fs	0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
KLK15	55554	genome.wustl.edu	37	19	51329095	51329095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017509.2	-1	reviewed	p.C243Y	1.000	221	0%	197	19.8%	0	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF841	284371	genome.wustl.edu	37	19	52569476	52569476	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001136499.1	-1	validated	p.G553	0.000	326	0%	96	20.8%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52705200	52705200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014225.5	+1	reviewed	p.R28C	0.995	215	0%	37	16.2%	88	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ZNF845	91664	genome.wustl.edu	37	19	53856449	53856449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_138374.1	+1	validated	p.R841C	0.000	435	0%	138	16.7%	3	33.3%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
SEC23B	10483	genome.wustl.edu	37	20	18541322	18541322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006363.4	+1	reviewed	p.D748N	1.000	319	0%	94	13.8%	61	18%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_SSF82754
XRN2	22803	genome.wustl.edu	37	20	21307238	21307238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012255.3	+1	reviewed	p.V105A	1.000	462	0%	139	16.5%	11	27.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_XRN_N
MYL9	10398	genome.wustl.edu	37	20	35176484	35176484	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006097.3	+1	reviewed	p.P78	0.006	83	0%	24	33.3%	38	2.6%	-	-	-	superfamily_EF-hand
NDRG3	57446	genome.wustl.edu	37	20	35282068	35282068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_032013.2	-1	validated	p.R328Q	1.000	190	0%	23	26.1%	21	9.5%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36431372	36431372	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_030877.3	+1	reviewed	p.L379	0.994	395	0%	87	13.8%	36	16.6%	-	-	-	superfamily_ARM repeat
RALGAPB	57148	genome.wustl.edu	37	20	37150144	37150144	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020336.2	+1	validated	p.I474	1.000	366	0%	181	31.5%	5	20%	-	-	-	NULL
MYBL2	4605	genome.wustl.edu	37	20	42320905	42320905	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002466.2	+1	reviewed	p.L203	0.997	95	0%	28	39.3%	12	41.6%	-	-	-	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44673611	44673611	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001134771.1	+1	reviewed	p.G490	0.185	162	0.6%	32	31.2%	0	-	-	-	-	HMMPfam_AA_permease
ELMO2	63916	genome.wustl.edu	37	20	45017820	45017820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_133171.3	-1	reviewed	p.S95P	0.991	176	1.1%	76	11.8%	3	0%	possibly_damaging(0.782)	tolerated(0.16)	neutral(0.352)	superfamily_ARM repeat
SULF2	55959	genome.wustl.edu	37	20	46301053	46301053	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018837.3	-1	validated	p.L489fs	0.342	-	-	-	-	-	-	-	-	-	superfamily_Alkaline phosphatase-like
SULF2	55959	genome.wustl.edu	37	20	46301060	46301061	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018837.3	-1	validated	p.S486fs	0.016:0.002	-	-	-	-	-	-	-	-	-	superfamily_Alkaline phosphatase-like
RTDR1	27156	genome.wustl.edu	37	22	23401683	23401683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_014433.2	-1	reviewed	p.R335Q	0.029	215	0%	33	21.2%	7	0%	possibly_damaging(0.87)	tolerated(0.09)	deleterious(0.635)	NULL
NEFH	4744	genome.wustl.edu	37	22	29884884	29884884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_021076.3	+1	reviewed	p.P419S	0.982	254	0%	39	33.3%	0	-	unknown(0)	tolerated(0.52)	-	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32498161	32498161	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_000343.3	+1	reviewed	p.F534	0.577	951	0%	495	17%	21	57.1%	-	-	-	NULL
ENSG00000210140	0	genome.wustl.edu	37	MT	5801	5801	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000387405	-1	novel	NULL	NULL	472	0%	1000	88.1%	1794	82.9%	-	-	-	-
NLGN4X	57502	genome.wustl.edu	37	X	5821544	5821544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_020742.2	-1	reviewed	p.P392H	1.000	214	0%	32	34.4%	1	0%	benign(0.138)	deleterious(0.03)	neutral(0.376)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
PDK3	5165	genome.wustl.edu	37	X	24545705	24545705	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001142386.2	+1	reviewed	p.A255	0.978	501	0%	272	19.1%	3	33.3%	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
MAGEB18	286514	genome.wustl.edu	37	X	26157355	26157355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_173699.3	+1	validated	p.A85T	0.000	128	0%	25	40%	0	-	benign(0.004)	tolerated(0.52)	neutral(0.009)	NULL
MED14	9282	genome.wustl.edu	37	X	40511081	40511081	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_004229.3	-1	reviewed	p.L1448	1.000	248	0%	102	21.6%	14	0%	-	-	-	NULL
SYN1	6853	genome.wustl.edu	37	X	47435612	47435612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006950.3	-1	reviewed	p.T359M	0.999	214	0%	136	16.2%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
SYN1	6853	genome.wustl.edu	37	X	47435801	47435801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_006950.3	-1	reviewed	p.T329A	1.000	293	0%	115	13%	0	-	possibly_damaging(0.666)	deleterious(0.01)	deleterious(0.641)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
NUDT10	170685	genome.wustl.edu	37	X	51076000	51076000	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	ENST00000356450	+1	known	p.A61	0.972	391	0%	36	11.1%	0	-	-	-	-	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX
GNL3L	54552	genome.wustl.edu	37	X	54570689	54570689	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_019067.5	+1	reviewed	p.L187Q	1.000	455	0%	113	19.5%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF52540
ERCC6L	54821	genome.wustl.edu	37	X	71427163	71427163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_017669.2	-1	validated	p.S485L	0.486	419	0%	200	11.5%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	superfamily_SSF52540
LOC100287854	100287854	genome.wustl.edu	37	X	102864064	102864064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	XM_002343834.1	-1	model	p.Q149R	0.957	1600	0.1%	894	13.2%	28	0%	-	-	-	NULL
CXorf57	55086	genome.wustl.edu	37	X	105881028	105881028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_018015.5	+1	validated	p.K483E	0.992	333	0%	104	18.3%	0	-	benign(0.054)	tolerated(0.05)	neutral(0.349)	NULL
RBMX	27316	genome.wustl.edu	37	X	135957703	135957703	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_002139.3	-1	reviewed	p.R195*	1.000	338	0%	93	15.1%	98	0%	-	-	-	HMMPfam_RBM1CTR
LDOC1	23641	genome.wustl.edu	37	X	140271000	140271000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_012317.2	-1	reviewed	p.V69	1.000	101	0%	29	20.7%	37	0%	-	-	-	NULL
GDI1	2664	genome.wustl.edu	37	X	153668811	153668811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UM-01A-11W-A10C-09	TCGA-BS-A0UM-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a0e72b1a-d0c2-4947-a5eb-faef1d0249c9	de026770-8a13-468e-9146-d5e2c3e8df1b	NM_001493.2	+1	reviewed	p.Y226F	1.000	334	0%	26	30.8%	57	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
