Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MYOM3	127294	genome.wustl.edu	37	1	24432425	24432425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_152372.3	-1	validated	p.P182Q	0.878	28	0%	20	20%	0	-	possibly_damaging(0.446)	tolerated(0.57)	neutral(0.152)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SZT2	23334	genome.wustl.edu	37	1	43868851	43868851	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001012961.1	+1	validated	p.E11*	1.000	391	0%	588	15.5%	1	0%	-	-	-	NULL
GLMN	11146	genome.wustl.edu	37	1	92712183	92712183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_053274.2	-1	reviewed	p.F563L	1.000	439	0%	631	40.7%	26	57.6%	possibly_damaging(0.793)	tolerated(0.66)	neutral(0.300)	HMMPfam_FKBP12
GLMN	11146	genome.wustl.edu	37	1	92712184	92712184	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_053274.2	-1	reviewed	p.F563Y	1.000	436	0%	618	39.8%	24	58.3%	possibly_damaging(0.916)	tolerated(1)	neutral(0.367)	HMMPfam_FKBP12
F5	2153	genome.wustl.edu	37	1	169524517	169524517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_000130.4	-1	reviewed	p.R341C	0.000	365	0%	508	41.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
QPCT	25797	genome.wustl.edu	37	2	37580047	37580047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_012413.3	+1	reviewed	p.P79L	1.000	209	0%	340	52.4%	7	14.2%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	superfamily_Zn-dependent exopeptidases
ERMN	57471	genome.wustl.edu	37	2	158178248	158178248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001009959.1	-1	validated	p.Q143H	0.000	263	0%	326	39.9%	0	-	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	NULL
AGAP1	116987	genome.wustl.edu	37	2	237028848	237028848	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	ENST00000418654	+1	known	p.T262A	0.965	38	0%	37	43.2%	5	60%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
LRRFIP1	9208	genome.wustl.edu	37	2	238626419	238626419	+	Silent	SNP	G	G	C	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001137550.1	+1	validated	p.L72	1.000	602	0%	712	36.1%	0	-	-	-	-	HMMPfam_DUF2051
ZNF717	100131827	genome.wustl.edu	37	3	75786971	75786971	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001128223.1	-1	validated	p.I601	0.000	401	0%	236	24.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ILDR1	286676	genome.wustl.edu	37	3	121720691	121720691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_175924.2	-1	provisional	p.E134K	1.000	215	0%	220	61.4%	0	-	probably_damaging(0.971)	tolerated(0.12)	deleterious(0.673)	HMMSmart_IG,superfamily_SSF48726
GPR171	29909	genome.wustl.edu	37	3	150917053	150917053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_013308.3	-1	validated	p.Q41K	0.864	120	0%	192	41.1%	0	-	benign(0.138)	tolerated(0.19)	neutral(0.061)	HMMPfam_7tm_1,superfamily_SSF81321
PIK3CA	5290	genome.wustl.edu	37	3	178936083	178936083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_006218.2	+1	reviewed	p.E542A	1.000	368	0%	529	77.3%	3	100%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
C4orf27	54969	genome.wustl.edu	37	4	170669973	170669973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_017867.2	-1	validated	p.P140L	1.000	245	0%	179	47.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2228
ODZ3	55714	genome.wustl.edu	37	4	183714097	183714097	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001080477.1	+1	provisional	p.Q2091fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PLEKHG4B	153478	genome.wustl.edu	37	5	174102	174102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_052909.3	+1	validated	p.R1075W	1.000	110	0%	136	35.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00233,superfamily_PH domain-like
RIOK2	55781	genome.wustl.edu	37	5	96500768	96500768	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_018343.2	-1	validated	p.S494*	1.000	353	0%	387	26.4%	15	26.6%	-	-	-	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140482454	140482454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_018937.2	+1	reviewed	p.G741S	0.000	185	0%	226	32.7%	7	0%	benign(0.085)	deleterious(0.03)	neutral(0.370)	NULL
BTNL3	10917	genome.wustl.edu	37	5	180432415	180432415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_197975.1	+1	validated	p.P315L	0.000	311	0%	541	35.3%	0	-	benign(0.403)	tolerated(0.08)	neutral(0.429)	HMMSmart_PRY
RANBP9	10048	genome.wustl.edu	37	6	13622615	13622615	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_005493.2	-1	reviewed	p.T723	0.998	128	0%	157	38.2%	25	60%	-	-	-	HMMPfam_RanBPM_CRA
CYP21A2	1589	genome.wustl.edu	37	6	32006215	32006217	+	In_Frame_Del	DEL	CTG	CTG	-	rs138498156	by1000genomes	TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_000500.5	+1	reviewed	p.L9in_frame_del	0.286:0.956:0.978	-	-	-	-	-	-	-	-	-	NULL
VNN1	8876	genome.wustl.edu	37	6	133013590	133013590	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_004666.2	-1	reviewed	p.A320	0.031	258	0%	305	18.4%	0	-	-	-	-	NULL
COX19	90639	genome.wustl.edu	37	7	975071	975071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	ENST00000457254	-1	known	p.P89S	1.000	46	0%	62	43.5%	12	25%	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
VWDE	221806	genome.wustl.edu	37	7	12412797	12412797	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001135924.1	-1	provisional	p.Q465*	1.000	185	0%	324	17.9%	0	-	-	-	-	HMMSmart_SM00216
SEMA3C	10512	genome.wustl.edu	37	7	80374328	80374328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_006379.2	-1	validated	p.R713Q	0.998	323	0%	307	13%	1	100%	benign(0.301)	tolerated(0.33)	neutral(0.117)	NULL
TMEM66	51669	genome.wustl.edu	37	8	29931531	29931531	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_016127.4	-1	provisional	p.H48	0.836	265	0%	220	68.6%	8	62.5%	-	-	-	HMMPfam_DUF1183
NOV	4856	genome.wustl.edu	37	8	120435253	120435253	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_002514.3	+1	reviewed	p.Q319*	0.006	36	0%	59	37.3%	2	0%	-	-	-	HMMSmart_CT,PatternScan_CTCK_1,HMMPfam_Cys_knot
SLC24A2	25769	genome.wustl.edu	37	9	19521031	19521031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_020344.1	-1	provisional	p.E533Q	1.000	172	0%	135	69.6%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_Na_Ca_ex
UCN3	114131	genome.wustl.edu	37	10	5415797	5415797	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_053049.2	+1	reviewed	p.T38	0.995	42	0%	56	39.3%	0	-	-	-	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70507314	70507314	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_018237.2	+1	validated	p.Q273*	1.000	239	0%	400	38.3%	1	0%	-	-	-	NULL
ZRANB1	54764	genome.wustl.edu	37	10	126672204	126672204	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_017580.2	+1	validated	p.L619V	1.000	237	0%	307	38.1%	22	13.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPR123	84435	genome.wustl.edu	37	10	134912161	134912161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001083909.1	+1	validated	p.R50H	0.867	23	0%	32	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
NAV2	89797	genome.wustl.edu	37	11	20072852	20072852	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_182964.5	+1	validated	p.N1486fs	1.000	-	-	-	-	-	-	-	-	-	NULL
C1QTNF5	114902	genome.wustl.edu	37	11	119210202	119210202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_015645.3	-1	reviewed	p.L191F	0.998	79	0%	61	42.6%	14	14.2%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
RBP5	83758	genome.wustl.edu	37	12	7281367	7281367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_031491.2	-1	provisional	p.P2L	1.000	357	0%	303	11.9%	10	0%	unknown(0)	deleterious(0)	-	superfamily_Calycin
FAM90A1	55138	genome.wustl.edu	37	12	8374781	8374782	+	In_Frame_Ins	INS	-	-	ACG	rs71265055	byCluster;by1000genomes	TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_018088.3	-1	validated	p.345in_frame_insV	0.003:0.001	-	-	-	-	-	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52200920	52200920	+	Missense_Mutation	SNP	G	G	A	rs147578087	by1000genomes	TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_014191.2	+1	reviewed	p.E1884K	1.000	47	0%	51	25.5%	4	50%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
COQ10A	93058	genome.wustl.edu	37	12	56662856	56662856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_144576.3	+1	validated	p.E99K	1.000	277	0%	307	47.6%	6	50%	benign(0.108)	tolerated(0.1)	neutral(0.295)	HMMPfam_Polyketide_cyc
ZFC3H1	196441	genome.wustl.edu	37	12	72009091	72009091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_144982.4	-1	validated	p.L1717P	1.000	243	0%	270	27.8%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
LRFN5	145581	genome.wustl.edu	37	14	42357117	42357117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_152447.3	+1	validated	p.T430M	0.996	149	0%	158	11.4%	2	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_fn3,superfamily_FN_III-like
BRD7	29117	genome.wustl.edu	37	16	50383999	50383999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_013263.3	-1	validated	p.M176V	1.000	777	0%	955	44.8%	5	60%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
TP53	7157	genome.wustl.edu	37	17	7577551	7577551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_000546.4	-1	reviewed	p.G244S	1.000	85	0%	73	68.5%	15	80%	possibly_damaging(0.721)	deleterious(0)	deleterious(0.706)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
SLC47A1	55244	genome.wustl.edu	37	17	19445707	19445707	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_018242.2	+1	validated	p.F46C	0.998	227	0%	237	26.2%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_MatE
MRI1	84245	genome.wustl.edu	37	19	13879242	13879242	+	Silent	SNP	C	C	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_032285.2	+1	validated	p.P147	0.000	47	0%	123	78%	14	78.5%	-	-	-	superfamily_SSF100950
SIGLEC6	946	genome.wustl.edu	37	19	52033179	52033179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001245.5	-1	validated	p.R271W	0.001	383	0%	570	43.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PPP2R1A	5518	genome.wustl.edu	37	19	52716323	52716323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_014225.5	+1	reviewed	p.S256Y	1.000	33	0%	39	33.3%	108	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
CSNK2A1	1457	genome.wustl.edu	37	20	480518	480518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001895.3	-1	reviewed	p.P92T	1.000	382	0%	539	46.6%	2	50%	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IFT52	51098	genome.wustl.edu	37	20	42232867	42232867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_016004.2	+1	validated	p.E128K	1.000	423	0.2%	657	49.3%	5	80%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MMP11	4320	genome.wustl.edu	37	22	24121497	24121497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_005940.3	+1	reviewed	p.P78S	0.985	4	0.000	9	0.667	52	46.1%	unknown(0)	tolerated(0.27)	-	PatternScan_CYSTEINE_SWITCH
LIMK2	3985	genome.wustl.edu	37	22	31662113	31662113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_001031801.1	+1	reviewed	p.I325V	1.000	181	0%	252	66.3%	15	100%	probably_damaging(0.987)	tolerated(0.29)	neutral(0.466)	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CCNB3	85417	genome.wustl.edu	37	X	50053708	50053708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_033031.2	+1	reviewed	p.E847K	0.000	111	0%	104	26.9%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
HAUS7	55559	genome.wustl.edu	37	X	152722109	152722109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16S-01A-11D-A12J-09	TCGA-D1-A16S-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fd61ddd-c5fb-4627-8143-a2478fa5085c	b57c8a4b-6c1b-45c8-9cdb-9e4513863d8e	NM_017518.6	-1	reviewed	p.S159R	0.083	39	0%	42	19%	61	19.6%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	NULL
