Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MRPL20	55052	genome.wustl.edu	37	1	1341189	1341189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017971.3	-1	reviewed	p.K92N	1.000	188	0%	192	37%	150	40.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Ribosomal_L20,superfamily_Ribosomal protein L20
KIAA1751	85452	genome.wustl.edu	37	1	1887100	1887100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080484.1	-1	predicted	p.W736R	0.013	34	0%	38	36.8%	0	-	unknown(0)	-	-	NULL
LOC100287750	100287750	genome.wustl.edu	37	1	2116748	2116748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002342013.1	-1	model	p.P138L	0.905	113	0%	108	42.6%	57	50.8%	unknown(0)	-	-	NULL
WRAP73	49856	genome.wustl.edu	37	1	3550008	3550008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017818.3	-1	reviewed	p.P292	0.000	17	0%	17	35.3%	5	40%	-	-	-	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
CEP104	9731	genome.wustl.edu	37	1	3754048	3754048	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014704.3	-1	validated	p.L309	0.000	188	0%	235	37%	2	0%	-	-	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	5934651	5934651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015102.2	-1	reviewed	p.E1037D	1.000	24	0%	19	26.3%	18	22.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
DNAJC11	55735	genome.wustl.edu	37	1	6741067	6741067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018198.3	-1	validated	p.R35W	1.000	263	0%	260	11.2%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
PADI4	23569	genome.wustl.edu	37	1	17668535	17668535	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012387.2	+1	reviewed	p.Y250	0.930	60	0%	86	24.4%	0	-	-	-	-	HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain
UBR4	23352	genome.wustl.edu	37	1	19491462	19491462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020765.2	-1	validated	p.H1448Y	1.000	79	0%	74	23%	2	0%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_ARM repeat
AKR7L	246181	genome.wustl.edu	37	1	19593888	19593888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_201252.3	-1	reviewed	p.A301V	0.809	93	0%	103	32%	1	0%	probably_damaging(0.981)	tolerated(0.51)	neutral(0.434)	superfamily_NAD(P)-linked oxidoreductase
BAI2	576	genome.wustl.edu	37	1	32193808	32193808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001703.2	-1	reviewed	p.R1497H	1.000	73	0%	90	35.6%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF362	149076	genome.wustl.edu	37	1	33742029	33742029	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152493.2	+1	validated	p.T61	0.913	12	0%	11	45.5%	13	53.8%	-	-	-	NULL
ZNF362	149076	genome.wustl.edu	37	1	33745788	33745788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152493.2	+1	validated	p.T138M	0.994	24	0%	24	29.2%	17	17.6%	unknown(0)	tolerated(0.1)	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34037277	34037277	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052896.3	-1	validated	p.W2606*	1.000	70	0%	85	28.2%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TEKT2	27285	genome.wustl.edu	37	1	36552585	36552585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014466.2	+1	reviewed	p.A229V	0.987	57	0%	73	32.9%	26	42.3%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Tektin
MACF1	23499	genome.wustl.edu	37	1	39827293	39827293	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000372925	+1	known	p.A1310V	1.000	124	0%	116	25.9%	1	100%	-	-	-	HMMSmart_SM00150
EDN2	1907	genome.wustl.edu	37	1	41945142	41945142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001956.3	-1	reviewed	p.K159E	0.000	201	0%	210	25.2%	0	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	41978648	41978648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024503.3	-1	validated	p.R2082W	0.945	22	0%	19	21.1%	1	0%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42049300	42049300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024503.3	-1	validated	p.E390A	1.000	151	0%	176	32.4%	1	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
DMAP1	55929	genome.wustl.edu	37	1	44685960	44685960	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001034023.1	+1	reviewed	p.G441	0.663	28	0%	29	27.6%	92	47.8%	-	-	-	NULL
HECTD3	79654	genome.wustl.edu	37	1	45472677	45472677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024602.5	-1	validated	p.R523C	1.000	75	0%	74	31.1%	13	30.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
TESK2	10420	genome.wustl.edu	37	1	45811096	45811096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007170.2	-1	reviewed	p.R378C	0.923	58	0%	57	35.1%	6	33.3%	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	NULL
GPBP1L1	60313	genome.wustl.edu	37	1	46120912	46120912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021639.4	-1	validated	p.H47R	1.000	198	0%	182	33.5%	25	48%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
ORC1	4998	genome.wustl.edu	37	1	52851603	52851603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004153.2	-1	reviewed	p.R468C	0.310	77	0%	67	32.8%	3	66.6%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
TTC4	7268	genome.wustl.edu	37	1	55197295	55197295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004623.3	+1	validated	p.R273M	0.982	138	0.7%	170	35.9%	25	36%	possibly_damaging(0.824)	tolerated(0.11)	deleterious(0.584)	NULL
EFCAB7	84455	genome.wustl.edu	37	1	63991310	63991310	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032437.2	+1	validated	p.R23*	0.996	133	0%	150	26.7%	2	50%	-	-	-	NULL
AK4	205	genome.wustl.edu	37	1	65690488	65690488	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001005353.1	+1	reviewed	p.P164	0.073	296	0%	319	31%	0	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC7	57554	genome.wustl.edu	37	1	70225911	70225911	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020794.2	+1	validated	p.I8	0.992	70	0%	68	29.4%	0	-	-	-	-	superfamily_L domain-like
LPHN2	23266	genome.wustl.edu	37	1	82408841	82408841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012302.2	+1	reviewed	p.R196C	1.000	274	0%	280	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OLF,HMMSmart_SM00284
LPHN2	23266	genome.wustl.edu	37	1	82456092	82456092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012302.2	+1	reviewed	p.A1159T	1.000	87	0%	122	10.7%	4	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Latrophilin
RBMXL1	494115	genome.wustl.edu	37	1	89448559	89448559	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000321792	-1	known	p.R317	1.000	193	1%	179	35.2%	13	7.6%	-	-	-	NULL
MTF2	22823	genome.wustl.edu	37	1	93594884	93594884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007358.3	+1	validated	p.R347*	1.000	219	0%	269	27.9%	0	-	-	-	-	NULL
AMY2B	280	genome.wustl.edu	37	1	104114328	104114328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020978.3	+1	reviewed	p.R35Q	1.000	1126	0%	1156	31.3%	3	33.3%	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
AMPD2	271	genome.wustl.edu	37	1	110169887	110169887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004037.6	+1	validated	p.R324H	1.000	106	0%	131	30.5%	8	0%	possibly_damaging(0.509)	tolerated(0.1)	neutral(0.457)	NULL
EPS8L3	79574	genome.wustl.edu	37	1	110294355	110294355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_139053.1	-1	reviewed	p.R496Q	0.000	62	0%	54	25.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
AP4B1	10717	genome.wustl.edu	37	1	114445435	114445435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006594.2	-1	validated	p.K55E	1.000	125	0%	156	28.8%	10	50%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CD101	9398	genome.wustl.edu	37	1	117576632	117576632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004258.3	+1	validated	p.R992Q	0.000	437	0%	473	30.4%	5	60%	benign(0.003)	tolerated(0.46)	neutral(0.012)	NULL
PEX11B	8799	genome.wustl.edu	37	1	145522548	145522548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003846.2	+1	validated	p.R137C	1.000	184	0%	191	29.3%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PEX11
FMO5	2330	genome.wustl.edu	37	1	146656151	146656151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001144829.1	-1	reviewed	p.D439N	0.002	425	0%	444	30.6%	2	50%	benign(0.282)	deleterious(0.01)	deleterious(0.492)	HMMPfam_FMO-like
OTUD7B	56957	genome.wustl.edu	37	1	149916336	149916336	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020205.2	-1	validated	p.K651T	1.000	94	0%	98	26.5%	9	0%	possibly_damaging(0.786)	tolerated(0.08)	deleterious(0.595)	NULL
TARS2	80222	genome.wustl.edu	37	1	150479465	150479465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_025150.3	+1	provisional	p.W694C	0.017	159	0%	171	31.6%	34	50%	benign(0.024)	tolerated(0.18)	neutral(0.057)	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
HORMAD1	84072	genome.wustl.edu	37	1	150684044	150684044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032132.3	-1	provisional	p.Y102H	0.991	291	0%	311	28.9%	0	-	probably_damaging(0.969)	tolerated(0.07)	deleterious(0.730)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
ZNF687	57592	genome.wustl.edu	37	1	151259295	151259295	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020832.1	+1	provisional	p.P176	0.914	49	0%	47	46.8%	15	40%	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152280133	152280133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002016.1	-1	reviewed	p.R2410H	0.000	225	0%	270	32.2%	0	-	unknown(0)	tolerated(0.13)	-	NULL
CRTC2	200186	genome.wustl.edu	37	1	153923811	153923811	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_181715.1	-1	provisional	p.D443	0.996	43	0%	50	10%	46	13%	-	-	-	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156498818	156498818	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_178229.4	-1	validated	p.L1487	0.008	139	0%	188	30.9%	11	72.7%	-	-	-	HMMPfam_RasGAP_C
BCAN	63827	genome.wustl.edu	37	1	156627946	156627946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021948.3	+1	validated	p.P774S	1.000	94	0%	111	36%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
INSRR	3645	genome.wustl.edu	37	1	156823662	156823662	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014215.1	-1	validated	p.G173	0.000	59	0%	68	38.2%	0	-	-	-	-	HMMPfam_Furin-like,superfamily_SSF52058
OR6P1	128366	genome.wustl.edu	37	1	158533282	158533282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000334632	-1	known	p.T38I	0.124	93	0%	101	28.7%	0	-	possibly_damaging(0.883)	deleterious(0.04)	deleterious(0.694)	superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158641913	158641913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003126.2	-1	reviewed	p.C475Y	1.000	192	0%	209	10.5%	0	-	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
LY9	4063	genome.wustl.edu	37	1	160769604	160769604	+	Silent	SNP	C	C	T	rs139694843	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002348.2	+1	validated	p.S62	0.000	93	0%	85	36.5%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
NIT1	4817	genome.wustl.edu	37	1	161088991	161088991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005600.1	+1	provisional	p.S56P	1.000	76	0%	83	36.1%	50	28%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
HSPA6	3310	genome.wustl.edu	37	1	161495899	161495899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002155.3	+1	validated	p.A484V	1.000	153	0%	155	32.9%	2	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
C1orf114	57821	genome.wustl.edu	37	1	169366494	169366494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021179.1	-1	predicted	p.R450W	0.994	344	0%	376	32.2%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
FMO1	2326	genome.wustl.edu	37	1	171244495	171244495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002021.1	+1	reviewed	p.C111Y	0.999	101	0%	132	31.1%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
C1orf49	84066	genome.wustl.edu	37	1	178485770	178485770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032126.4	+1	validated	p.K79N	1.000	218	0%	259	35.9%	0	-	-	-	-	NULL
ABL2	27	genome.wustl.edu	37	1	179077240	179077240	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007314.3	-1	reviewed	p.S1054	0.747	104	0%	105	35.2%	6	0%	-	-	-	HMMPfam_F_actin_bind
CACNA1E	777	genome.wustl.edu	37	1	181689946	181689946	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000721.2	+1	reviewed	p.S637	0.007	198	0%	209	29.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LHX9	56956	genome.wustl.edu	37	1	197889272	197889272	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020204.2	+1	reviewed	p.D115	1.000	61	0%	59	49.2%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PPFIA4	8497	genome.wustl.edu	37	1	203028921	203028921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015053.1	+1	validated	p.R336H	1.000	113	0%	115	25.2%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_SAM/Pointed domain
PLEKHA6	22874	genome.wustl.edu	37	1	204192622	204192622	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014935.2	-1	validated	p.D1041	1.000	51	0%	76	26.3%	4	25%	-	-	-	NULL
CTSE	1510	genome.wustl.edu	37	1	206317646	206317646	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001910.2	+1	reviewed	e1+2	1.000	138	0%	140	30.7%	0	-	-	-	-	-
DYRK3	8444	genome.wustl.edu	37	1	206821585	206821585	+	Missense_Mutation	SNP	C	C	T	rs35968381		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003582.2	+1	reviewed	p.R348C	0.947	91	0%	103	37.9%	1	0%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLXNA2	5362	genome.wustl.edu	37	1	208206717	208206717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_025179.3	-1	reviewed	p.R1668W	1.000	91	0%	106	29.2%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
ANGEL2	90806	genome.wustl.edu	37	1	213168440	213168440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144567.3	-1	validated	p.N526	1.000	282	0%	252	26.2%	1	100%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
USH2A	7399	genome.wustl.edu	37	1	215972457	215972457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_206933.2	-1	reviewed	p.C3250*	1.000	79	0%	123	44.7%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216052380	216052380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_206933.2	-1	reviewed	p.P2762S	1.000	225	0%	214	36%	0	-	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IARS2	55699	genome.wustl.edu	37	1	220269519	220269519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018060.3	+1	validated	p.G114E	1.000	215	0%	227	26.9%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
TP53BP2	7159	genome.wustl.edu	37	1	224008996	224008996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001031685.2	-1	reviewed	p.C34Y	1.000	286	0%	256	37.9%	3	33.3%	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
LIN9	286826	genome.wustl.edu	37	1	226453982	226453982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173083.2	-1	provisional	p.R306W	1.000	248	0%	301	33.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IBA57	200205	genome.wustl.edu	37	1	228362552	228362552	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001010867.2	+1	validated	p.P167	0.000	12	0%	13	38.5%	9	33.3%	-	-	-	superfamily_SSF103025
GALNT2	2590	genome.wustl.edu	37	1	230381873	230381873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004481.3	+1	reviewed	p.G265E	1.000	227	0.4%	264	35.6%	14	42.8%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SIPA1L2	57568	genome.wustl.edu	37	1	232650228	232650228	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020808.3	-1	validated	p.S286	0.000	111	0%	104	28.8%	1	100%	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233120059	233120059	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000429988	-1	known	p.R936*	0.208	17	0%	13	30.8%	35	22.8%	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235973575	235973575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000081.2	-1	reviewed	p.K181N	0.969	384	0%	400	29.5%	0	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
NID1	4811	genome.wustl.edu	37	1	236156997	236156997	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002508.2	-1	reviewed	p.R901	0.119	6	0.000	8	0.500	58	0%	-	-	-	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
KIF26B	55083	genome.wustl.edu	37	1	245775128	245775128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018012.3	+1	provisional	p.A650T	0.959	20	0%	36	33.3%	1	100%	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13G1	441933	genome.wustl.edu	37	1	247835957	247835957	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001005487.1	-1	provisional	p.Y129	0.017	97	0%	104	28.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SNTG2	54221	genome.wustl.edu	37	2	1271292	1271292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018968.3	+1	reviewed	p.M411I	0.159	88	0%	84	31%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
HS1BP3	64342	genome.wustl.edu	37	2	20840941	20840941	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022460.3	-1	reviewed	e3-1	1.000	226	0%	236	31.8%	0	-	-	-	-	-
ATAD2B	54454	genome.wustl.edu	37	2	24046398	24046398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017552.1	-1	validated	p.A621T	1.000	66	0%	71	15.5%	4	0%	benign(0.334)	deleterious(0.04)	neutral(0.454)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASXL2	55252	genome.wustl.edu	37	2	25982440	25982440	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018263.4	-1	validated	p.R284*	0.937	365	0%	387	25.6%	0	-	-	-	-	NULL
FAM59B	150946	genome.wustl.edu	37	2	26410859	26410859	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000380681	+1	known	p.R899	0.997	33	0%	42	45.2%	0	-	-	-	-	NULL
C2orf18	54978	genome.wustl.edu	37	2	26998371	26998371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017877.3	+1	validated	p.R121Q	1.000	175	0.6%	218	34.4%	37	27%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF6,superfamily_SSF103481
PREB	10113	genome.wustl.edu	37	2	27354338	27354338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013388.4	-1	reviewed	p.G400W	0.952	146	0%	156	38.5%	98	45.9%	unknown(0)	-	-	NULL
TRIM54	57159	genome.wustl.edu	37	2	27528582	27528582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032546.2	+1	reviewed	p.R289H	0.868	30	0%	31	41.9%	1	0%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
EIF2B4	8890	genome.wustl.edu	37	2	27592366	27592366	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_172195.3	-1	reviewed	p.E63	1.000	574	0%	630	31.9%	6	0%	-	-	-	NULL
CCDC121	79635	genome.wustl.edu	37	2	27850624	27850624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142683.2	-1	validated	p.R177W	0.000	287	0%	237	32.5%	1	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
BRE	9577	genome.wustl.edu	37	2	28248190	28248190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004899.3	+1	validated	p.R133Q	0.998	170	0%	102	32.4%	2	100%	benign(0.003)	tolerated(0.57)	neutral(0.006)	HMMPfam_BRE
TRMT61B	55006	genome.wustl.edu	37	2	29092940	29092940	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017910.3	-1	validated	p.P68	0.000	127	0%	157	31.2%	5	40%	-	-	-	NULL
CAPN14	440854	genome.wustl.edu	37	2	31428272	31428272	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145122.1	-1	validated	p.A14	0.006	71	0%	82	26.8%	0	-	-	-	-	superfamily_Cysteine proteinases
OTX1	5013	genome.wustl.edu	37	2	63280185	63280185	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014562.2	+1	reviewed	p.P20	0.023	43	0%	32	37.5%	3	33.3%	-	-	-	superfamily_Homeodomain-like
ASPRV1	151516	genome.wustl.edu	37	2	70188397	70188397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152792.2	-1	validated	p.L142I	1.000	82	0%	82	30.5%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73680642	73680642	+	Silent	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015120.4	+1	reviewed	p.R2329	0.000	126	0%	129	27.1%	0	-	-	-	-	NULL
PTCD3	55037	genome.wustl.edu	37	2	86359497	86359497	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017952.5	+1	validated	p.T441	0.066	284	0.4%	279	31.2%	8	37.5%	-	-	-	NULL
KCNIP3	30818	genome.wustl.edu	37	2	96048205	96048205	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013434.4	+1	reviewed	p.A212	0.042	10	0%	15	46.7%	0	-	-	-	-	superfamily_EF-hand
AFF3	3899	genome.wustl.edu	37	2	100623774	100623774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001025108.1	-1	reviewed	p.I133T	0.011	279	0%	306	30.4%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_AF-4
NPAS2	4862	genome.wustl.edu	37	2	101580600	101580600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002518.3	+1	reviewed	p.I227V	1.000	175	0%	175	36%	1	0%	benign(0)	tolerated(1)	-	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102476259	102476259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145686.2	+1	reviewed	p.R546M	0.995	75	0%	66	28.8%	22	27.2%	unknown(0)	tolerated(0.14)	-	NULL
IL1RL2	8808	genome.wustl.edu	37	2	102849462	102849462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003854.2	+1	reviewed	p.P392L	0.012	176	0%	255	22.7%	6	33.3%	possibly_damaging(0.736)	tolerated(0.27)	neutral(0.302)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
LOC100287152	100287152	genome.wustl.edu	37	2	105924231	105924231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002342237.1	+1	model	p.V84I	0.928	47	0%	49	20.4%	5	80%	-	-	-	NULL
PAX8	7849	genome.wustl.edu	37	2	113984805	113984805	+	Missense_Mutation	SNP	G	G	A	rs189229644	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013952.3	-1	reviewed	p.P346L	0.929	51	0%	66	27.3%	204	46.5%	unknown(0)	tolerated(1)	-	NULL
PAX8	7849	genome.wustl.edu	37	2	114000288	114000288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003466.3	-1	reviewed	p.L153M	1.000	289	0%	306	30.7%	69	63.7%	probably_damaging(0.976)	tolerated(0.3)	neutral(0.447)	NULL
FOXD4L1	200350	genome.wustl.edu	37	2	114257693	114257693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012184.4	+1	reviewed	p.A287V	0.006	12	0%	11	45.5%	0	-	benign(0.308)	deleterious(0.01)	deleterious(0.502)	NULL
STEAP3	55240	genome.wustl.edu	37	2	120005392	120005392	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_182915.2	+1	validated	p.P220	0.001	26	0%	23	30.4%	17	52.9%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
ERCC3	2071	genome.wustl.edu	37	2	128044466	128044466	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000122.1	-1	reviewed	p.D385	0.949	113	0%	149	38.9%	73	24.6%	-	-	-	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CFC1	55997	genome.wustl.edu	37	2	131356274	131356274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032545.2	-1	reviewed	p.G63V	0.001	179	0%	235	18.3%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414909	131414909	+	Missense_Mutation	SNP	G	G	A	rs78068205		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_929706.3	+1	model	p.R859H	1.000	97	0%	93	9.7%	0	-	possibly_damaging(0.623)	tolerated(0.14)	neutral(0.467)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
FAP	2191	genome.wustl.edu	37	2	163059614	163059614	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004460.2	-1	reviewed	p.S363	1.000	212	0%	182	24.7%	3	33.3%	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
LRP2	4036	genome.wustl.edu	37	2	170096120	170096120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004525.2	-1	reviewed	p.C1404Y	1.000	210	0%	262	12.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
UBR3	130507	genome.wustl.edu	37	2	170783469	170783469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_172070.3	+1	validated	p.R776C	1.000	321	0%	377	34.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTN	7273	genome.wustl.edu	37	2	179468881	179468881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000356127	-1	known	p.R15610H	0.983	250	0%	298	30.9%	0	-	possibly_damaging(0.737)	-	-	HMMPfam_fn3,HMMSmart_SM00060
NUP35	129401	genome.wustl.edu	37	2	184016266	184016266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_138285.3	+1	reviewed	p.G143D	1.000	211	0%	215	31.2%	12	25%	benign(0.299)	tolerated(0.31)	neutral(0.119)	NULL
MSTN	2660	genome.wustl.edu	37	2	190922077	190922077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005259.2	-1	reviewed	p.M345I	1.000	207	0%	184	31%	0	-	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
STAT1	6772	genome.wustl.edu	37	2	191841736	191841736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007315.3	-1	reviewed	p.A630V	1.000	198	0%	193	30.1%	64	1.5%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	HMMPfam_SH2,superfamily_SH2 domain
HECW2	57520	genome.wustl.edu	37	2	197184242	197184242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020760.1	-1	provisional	p.N458D	0.997	75	0%	71	33.8%	0	-	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197878305	197878305	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_153697.1	-1	provisional	p.A593	0.841	145	0%	167	48.5%	3	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
KCTD18	130535	genome.wustl.edu	37	2	201371712	201371712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152387.2	-1	validated	p.V10M	0.986	156	0%	172	23.8%	1	100%	benign(0.005)	tolerated(0.51)	neutral(0.009)	NULL
BMPR2	659	genome.wustl.edu	37	2	203379664	203379664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001204.6	+1	reviewed	p.E195K	1.000	239	0%	306	23.5%	5	40%	possibly_damaging(0.452)	tolerated(0.85)	neutral(0.148)	superfamily_Kinase_like
PARD3B	117583	genome.wustl.edu	37	2	206110532	206110532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152526.4	+1	validated	p.A662V	1.000	393	0%	446	33.4%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
MAP2	4133	genome.wustl.edu	37	2	210517948	210517948	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002374.3	+1	reviewed	p.P18	0.012	87	0%	69	44.9%	0	-	-	-	-	NULL
ACADL	33	genome.wustl.edu	37	2	211085514	211085514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001608.3	-1	reviewed	p.S30	0.590	173	0%	171	26.9%	0	-	-	-	-	NULL
FN1	2335	genome.wustl.edu	37	2	216236721	216236722	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_212482.1	-1	reviewed	p.Q2209fs	1.000:0.985	-	-	-	-	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
IGFBP5	3488	genome.wustl.edu	37	2	217542919	217542919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000599.3	-1	validated	p.Q201H	1.000	51	0%	60	41.7%	81	1.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin_1
DNAJB2	3300	genome.wustl.edu	37	2	220145304	220145304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006736.5	+1	validated	p.R24W	0.998	104	0%	127	31.5%	19	26.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
SPEG	10290	genome.wustl.edu	37	2	220348809	220348809	+	Silent	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005876.4	+1	validated	p.P2208	0.999	50	0%	60	31.7%	0	-	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225669924	225669924	+	Silent	SNP	G	G	A	rs139394216	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000409802	-1	known	p.R76*	0.999	93	0%	100	34%	0	-	-	-	-	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228886635	228886635	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142644.1	-1	validated	p.N163	1.000	179	0%	200	31.5%	0	-	-	-	-	NULL
SP100	6672	genome.wustl.edu	37	2	231307786	231307786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080391.1	+1	validated	p.R81H	0.125	207	0%	220	37.3%	4	25%	possibly_damaging(0.702)	tolerated(0.3)	neutral(0.281)	HMMPfam_Sp100
B3GNT7	93010	genome.wustl.edu	37	2	232263506	232263506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145236.2	+1	validated	p.R359H	1.000	12	0%	28	21.4%	4	25%	benign(0.076)	tolerated(0.13)	neutral(0.258)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235950102	235950102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014521.2	+1	reviewed	p.P230L	0.000	49	0%	48	31.2%	17	35.2%	benign(0.012)	tolerated(0.3)	neutral(0.029)	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241463443	241463444	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016552.2	-1	validated	p.C475fs	0.000:0.002	-	-	-	-	-	-	-	-	-	superfamily_Ankyrin repeat
RNPEPL1	57140	genome.wustl.edu	37	2	241513717	241513717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018226.3	+1	provisional	p.E145K	1.000	34	0%	36	33.3%	390	29.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M1,superfamily_SSF55486
SEPT2	4735	genome.wustl.edu	37	2	242289526	242289531	+	In_Frame_Del	DEL	GCAGAT	GCAGAT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	GCAGAT	GCAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001008491.1	+1	validated	p.MQ345in_frame_del	0.000:0.999:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BRPF1	7862	genome.wustl.edu	37	3	9784768	9784768	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001003694.1	+1	reviewed	p.N714	0.839	124	0%	150	30.7%	18	27.7%	-	-	-	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
CAMK1	8536	genome.wustl.edu	37	3	9802445	9802445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003656.3	-1	reviewed	p.G214S	1.000	122	0%	120	29.2%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SATB1	6304	genome.wustl.edu	37	3	18391008	18391008	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001131010.1	-1	validated	p.T649R	0.999	98	0%	102	12.7%	3	0%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
KAT2B	8850	genome.wustl.edu	37	3	20167452	20167452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003884.4	+1	reviewed	p.R490H	1.000	115	0%	112	39.3%	3	33.3%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
UBE2E2	7325	genome.wustl.edu	37	3	23631289	23631289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152653.3	+1	validated	p.M191I	1.000	69	0%	53	28.3%	14	0%	benign(0)	tolerated(1)	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
GLB1	2720	genome.wustl.edu	37	3	33055720	33055720	+	Missense_Mutation	SNP	C	C	T	rs186781398	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000404.2	-1	reviewed	p.C521Y	0.000	151	0%	168	31.5%	178	41.5%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33648902	33648902	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015097.1	-1	validated	p.D500	1.000	187	0%	218	33.5%	0	-	-	-	-	superfamily_ARM repeat
XYLB	9942	genome.wustl.edu	37	3	38454433	38454433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005108.3	+1	reviewed	p.E514K	0.556	189	0%	178	32%	2	50%	benign(0)	tolerated(0.92)	-	HMMPfam_FGGY_C,superfamily_SSF53067
XIRP1	165904	genome.wustl.edu	37	3	39228103	39228103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_194293.2	-1	provisional	p.R945Q	1.000	16	0%	18	33.3%	0	-	benign(0.198)	deleterious(0)	neutral(0.464)	NULL
ZNF197	10168	genome.wustl.edu	37	3	44672664	44672664	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006991.3	+1	reviewed	p.P167	0.000	142	0%	157	23.6%	5	60%	-	-	-	NULL
TDGF1	6997	genome.wustl.edu	37	3	46621508	46621508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003212.3	+1	reviewed	p.G136S	0.997	90	0%	133	29.3%	3	33.3%	benign(0.385)	deleterious(0.03)	deleterious(0.487)	HMMPfam_CFC
SLC26A6	65010	genome.wustl.edu	37	3	48668557	48668557	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000414944	-1	known	p.W142*	0.308	60	0%	69	36.2%	19	52.6%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
AMIGO3	386724	genome.wustl.edu	37	3	49756614	49756614	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198722.2	-1	validated	p.N95	0.322	12	0%	24	25%	15	53.3%	-	-	-	superfamily_SSF52058
TKT	7086	genome.wustl.edu	37	3	53263442	53263442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001064.2	-1	validated	p.A373V	1.000	32	0%	37	24.3%	403	4.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
FLNB	2317	genome.wustl.edu	37	3	58139357	58139357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001457.3	+1	reviewed	p.A2208V	1.000	78	0%	85	27.1%	59	42.3%	possibly_damaging(0.948)	tolerated(0.5)	neutral(0.401)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
SUCLG2	8801	genome.wustl.edu	37	3	67568757	67568757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003848.3	-1	reviewed	p.Q192E	1.000	152	0%	165	33.9%	3	33.3%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_ATP-grasp_2,superfamily_SSF56059
ROBO2	6092	genome.wustl.edu	37	3	77614212	77614212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002942.3	+1	reviewed	p.A597V	1.000	133	0%	174	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
EPHA3	2042	genome.wustl.edu	37	3	89391190	89391190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005233.5	+1	reviewed	p.S419T	1.000	61	0%	73	24.7%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_fn3,superfamily_Fibronectin type III
ABI3BP	25890	genome.wustl.edu	37	3	100621501	100621501	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015429.3	-1	validated	p.R104*	0.957	185	0%	218	29.8%	2	0%	-	-	-	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120760595	120760595	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014980.2	+1	validated	p.A112	1.000	327	0.3%	293	37.2%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
POLQ	10721	genome.wustl.edu	37	3	121207647	121207647	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_199420.3	-1	validated	p.A1377	0.000	237	0%	291	33.7%	1	100%	-	-	-	NULL
CASR	846	genome.wustl.edu	37	3	122002836	122002836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000388.3	+1	reviewed	p.L679M	1.000	71	0%	69	20.3%	0	-	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	HMMPfam_7tm_3
KALRN	8997	genome.wustl.edu	37	3	124209631	124209631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001024660.3	+1	reviewed	p.R1494Q	1.000	106	0%	139	28.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LOC100288624	100288624	genome.wustl.edu	37	3	124281708	124281708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002342367.1	-1	model	p.S59N	1.000	51	0%	52	38.5%	0	-	-	-	-	NULL
SLC12A8	84561	genome.wustl.edu	37	3	124906155	124906155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024628.5	-1	validated	p.V106I	0.999	49	0%	59	25.4%	19	36.8%	unknown(0)	deleterious(0)	-	HMMPfam_AA_permease
C3orf56	285311	genome.wustl.edu	37	3	126915772	126915772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000398112	+1	known	p.L82F	0.000	50	0%	47	25.5%	0	-	possibly_damaging(0.649)	-	-	NULL
COL6A6	131873	genome.wustl.edu	37	3	130286021	130286021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001102608.1	+1	provisional	p.E586D	0.000	30	0%	29	20.7%	0	-	benign(0.001)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
DZIP1L	199221	genome.wustl.edu	37	3	137816679	137816679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173543.2	-1	validated	p.C171Y	1.000	84	0%	67	28.4%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1
ATR	545	genome.wustl.edu	37	3	142226864	142226864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001184.3	-1	reviewed	p.R1647H	1.000	146	0%	189	36.5%	1	0%	benign(0.422)	deleterious(0.03)	deleterious(0.502)	superfamily_ARM repeat
PAQR9	344838	genome.wustl.edu	37	3	142681163	142681163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198504.2	-1	validated	p.A339V	0.951	39	0%	42	11.9%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SLC9A9	285195	genome.wustl.edu	37	3	143567007	143567007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173653.3	-1	reviewed	p.G53E	1.000	179	0%	244	33.6%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Na_H_Exchanger
P2RY14	9934	genome.wustl.edu	37	3	150931811	150931811	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001081455.1	-1	reviewed	p.A98	0.010	106	0%	106	39.6%	7	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
IL12A	3592	genome.wustl.edu	37	3	159708016	159708016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000882.2	+1	reviewed	p.V61M	0.000	86	0%	108	13%	0	-	possibly_damaging(0.711)	deleterious(0.03)	deleterious(0.621)	HMMPfam_IL12
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006218.2	+1	reviewed	p.R88Q	1.000	143	0%	141	23.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
GNB4	59345	genome.wustl.edu	37	3	179137245	179137245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021629.3	-1	reviewed	p.R49C	1.000	339	0%	357	35.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
USP13	8975	genome.wustl.edu	37	3	179472564	179472564	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003940.2	+1	validated	p.R615*	1.000	212	0.5%	243	33.3%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
CLCN2	1181	genome.wustl.edu	37	3	184070829	184070830	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004366.4	-1	reviewed	p.P713fs	0.995:0.997	-	-	-	-	-	-	-	-	-	HMMPfam_CBS
ETV5	2119	genome.wustl.edu	37	3	185769852	185769853	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004454.2	-1	validated	p.L426fs	0.985:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785
ST6GAL1	6480	genome.wustl.edu	37	3	186760952	186760952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003032.2	+1	reviewed	p.E154A	0.999	123	0%	119	33.6%	4	0%	possibly_damaging(0.892)	tolerated(0.48)	neutral(0.362)	HMMPfam_Glyco_transf_29
RTP1	132112	genome.wustl.edu	37	3	186917489	186917489	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_153708.2	+1	validated	p.D141	1.000	28	0%	39	38.5%	0	-	-	-	-	NULL
MASP1	5648	genome.wustl.edu	37	3	186938837	186938837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001879.5	-1	reviewed	p.A632D	1.000	274	0%	283	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
BCL6	604	genome.wustl.edu	37	3	187446312	187446312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001130845.1	-1	reviewed	p.R459H	1.000	60	0%	72	47.2%	21	38%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
BDH1	622	genome.wustl.edu	37	3	197249620	197249620	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004051.4	-1	reviewed	p.D100	1.000	99	0%	130	33.8%	6	50%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
LRCH3	84859	genome.wustl.edu	37	3	197553835	197553835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032773.2	+1	provisional	p.L243I	1.000	214	0%	232	28.4%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF52058
IDUA	3425	genome.wustl.edu	37	4	995819	995819	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000203.3	+1	reviewed	p.Q281P	0.158	34	0%	28	46.4%	97	26.8%	benign(0.149)	tolerated(0.06)	neutral(0.336)	HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat
KIAA1239	57495	genome.wustl.edu	37	4	37447416	37447416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001144990.1	+1	validated	p.S1269N	1.000	112	0%	139	18.7%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_WD40_like
UCHL1	7345	genome.wustl.edu	37	4	41266144	41266144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004181.4	+1	reviewed	p.N184S	1.000	196	0%	231	24.7%	3	0%	benign(0.005)	tolerated(0.31)	neutral(0.027)	HMMPfam_Peptidase_C12,superfamily_SSF54001
GABRA4	2557	genome.wustl.edu	37	4	46995362	46995362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000809.2	-1	reviewed	p.A27V	1.000	58	0%	65	29.2%	0	-	possibly_damaging(0.753)	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48514624	48514624	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015030.1	-1	validated	p.A2673	0.315	153	0%	161	31.7%	8	25%	-	-	-	superfamily_ARM repeat
LRRC66	339977	genome.wustl.edu	37	4	52862252	52862252	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001024611.1	-1	provisional	p.R312	0.000	85	0%	85	25.9%	1	0%	-	-	-	NULL
LOC100288413	100288413	genome.wustl.edu	37	4	53611521	53611521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002342451.1	-1	model	p.P56L	0.337	175	0%	212	21.2%	2	0%	-	-	-	NULL
SCFD2	152579	genome.wustl.edu	37	4	54231483	54231483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152540.3	-1	validated	p.T209N	1.000	113	0%	135	34.8%	10	50%	possibly_damaging(0.694)	tolerated(0.29)	neutral(0.278)	NULL
KIT	3815	genome.wustl.edu	37	4	55599284	55599284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000222.2	+1	reviewed	p.R804W	1.000	194	0%	245	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KIAA1211	57482	genome.wustl.edu	37	4	57180590	57180590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020722.1	+1	validated	p.R308C	0.000	18	0%	21	23.8%	1	0%	unknown(0)	deleterious(0.02)	-	NULL
RUFY3	22902	genome.wustl.edu	37	4	71659508	71659508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001037442.2	+1	validated	p.R448	1.000	46	0%	51	33.3%	4	50%	benign(0.005)	tolerated(0.09)	neutral(0.296)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74008365	74008365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032217.3	-1	reviewed	p.R693C	1.000	116	0%	109	34.9%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,superfamily_Ankyrin repeat
EREG	2069	genome.wustl.edu	37	4	75246855	75246855	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001432.2	+1	validated	e3+1	1.000	245	0%	238	28.2%	0	-	-	-	-	-
CCDC158	339965	genome.wustl.edu	37	4	77247038	77247038	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001042784.1	-1	validated	p.K1043fs	0.009	-	-	-	-	-	-	-	-	-	NULL
SOWAHB	345079	genome.wustl.edu	37	4	77816859	77816859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001029870.1	-1	provisional	p.T715I	0.912	173	0%	183	25.7%	1	0%	possibly_damaging(0.903)	tolerated(0.21)	neutral(0.402)	superfamily_ANK
TRPC3	7222	genome.wustl.edu	37	4	122853690	122853690	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001130698.1	-1	validated	p.A241	0.977	47	0%	59	39%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
HSPA4L	22824	genome.wustl.edu	37	4	128726860	128726860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014278.2	+1	provisional	p.A386T	1.000	239	0%	321	29.9%	0	-	benign(0.135)	tolerated(0.31)	neutral(0.038)	HMMPfam_HSP70,superfamily_SSF100920
C4orf33	132321	genome.wustl.edu	37	4	130023766	130023766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001099783.1	+1	validated	p.M1V	0.998	152	0%	172	23.8%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
MAML3	55534	genome.wustl.edu	37	4	140810641	140810643	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018717.4	-1	validated	p.Q650in_frame_del	0.000:0.003:0.005	-	-	-	-	-	-	-	-	-	NULL
MAB21L2	10586	genome.wustl.edu	37	4	151505013	151505013	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006439.4	+1	reviewed	p.L278	1.000	42	0%	52	32.7%	0	-	-	-	-	HMMPfam_Mab-21
FAM149A	25854	genome.wustl.edu	37	4	187073162	187073162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001006655.2	+1	validated	p.E17K	0.997	160	0%	153	31.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAT1	2195	genome.wustl.edu	37	4	187530956	187530956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005245.3	-1	reviewed	p.T3356M	0.657	153	0%	192	30.2%	30	33.3%	benign(0.255)	tolerated(0.08)	neutral(0.327)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
UBE2QL1	134111	genome.wustl.edu	37	5	6491376	6491376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145161.1	+1	provisional	p.R134S	1.000	128	0%	138	31.9%	2	0%	probably_damaging(0.974)	tolerated(0.17)	deleterious(0.475)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
ZFR	51663	genome.wustl.edu	37	5	32380216	32380216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016107.3	-1	validated	p.A902T	1.000	115	0%	169	32%	43	51.1%	probably_damaging(0.979)	tolerated(0.2)	deleterious(0.471)	HMMPfam_DZF,HMMSmart_DZF
HCN1	348980	genome.wustl.edu	37	5	45262465	45262465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021072.2	-1	validated	p.P744L	0.902	102	0%	136	26.5%	0	-	benign(0.223)	tolerated(0.23)	neutral(0.064)	NULL
HCN1	348980	genome.wustl.edu	37	5	45262792	45262792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021072.2	-1	validated	p.A635V	0.997	316	0%	324	35.5%	0	-	benign(0.007)	tolerated(0.17)	neutral(0.059)	NULL
IL6ST	3572	genome.wustl.edu	37	5	55247829	55247830	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002184.2	-1	reviewed	p.P542fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MARVELD2	153562	genome.wustl.edu	37	5	68728826	68728826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001038603.2	+1	validated	p.K470R	1.000	192	0%	234	36.8%	5	80%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_Occludin_ELL
ZNF366	167465	genome.wustl.edu	37	5	71756437	71756437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152625.1	-1	provisional	p.L296P	1.000	25	0%	56	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM171	134285	genome.wustl.edu	37	5	72419443	72419443	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173490.6	+1	validated	p.A81	0.004	115	0%	141	34%	0	-	-	-	-	NULL
RGNEF	64283	genome.wustl.edu	37	5	72980695	72980695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080479.2	+1	reviewed	p.E7K	0.989	170	0%	224	27.2%	3	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80382766	80382766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006909.1	+1	validated	p.R462C	1.000	93	0%	114	21.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARRDC3	57561	genome.wustl.edu	37	5	90672440	90672440	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020801.2	-1	validated	p.L170fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ERAP2	64167	genome.wustl.edu	37	5	96244727	96244727	+	Missense_Mutation	SNP	G	G	C	rs112136175		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001130140.1	+1	validated	p.S692T	0.033	169	0.6%	178	33.7%	6	16.6%	benign(0.167)	tolerated(0.26)	neutral(0.049)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130797681	130797681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016340.5	-1	validated	p.T861A	1.000	123	0%	119	28.6%	0	-	possibly_damaging(0.929)	tolerated(0.55)	neutral(0.383)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
CDC25C	995	genome.wustl.edu	37	5	137622226	137622226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001790.3	-1	reviewed	p.V374M	1.000	139	0%	143	39.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
CTNNA1	1495	genome.wustl.edu	37	5	138268381	138268381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001903.2	+1	validated	p.G805R	1.000	72	0%	75	22.7%	714	42.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
IK	3550	genome.wustl.edu	37	5	140038610	140038610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006083.3	+1	reviewed	p.R346H	1.000	240	0%	261	30.3%	168	30.3%	probably_damaging(0.995)	tolerated(0.27)	deleterious(0.491)	NULL
PCDHB1	29930	genome.wustl.edu	37	5	140431583	140431583	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013340.2	+1	reviewed	p.G176	0.000	24	0%	31	32.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140475977	140475977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018936.2	+1	reviewed	p.A535T	0.998	47	0%	44	29.5%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA3	56112	genome.wustl.edu	37	5	140723815	140723815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018916.3	+1	reviewed	p.T72M	0.338	43	0%	40	27.5%	0	-	benign(0.036)	tolerated(0.15)	neutral(0.243)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141051674	141051674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022481.5	-1	reviewed	p.C527Y	1.000	56	0%	60	15%	6	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP
ARAP3	64411	genome.wustl.edu	37	5	141059549	141059549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022481.5	-1	reviewed	p.A169T	0.011	72	0%	74	25.7%	3	0%	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147480113	147480113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001127698.1	+1	reviewed	p.G397S	0.983	266	0.4%	257	22.6%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
G3BP1	10146	genome.wustl.edu	37	5	151175080	151175080	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005754.2	+1	reviewed	p.Q161	0.988	225	0%	198	33.3%	8	25%	-	-	-	NULL
WWC1	23286	genome.wustl.edu	37	5	167891774	167891774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015238.2	+1	reviewed	p.R986H	1.000	43	0%	53	32.1%	52	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLIT3	6586	genome.wustl.edu	37	5	168098456	168098456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003062.2	-1	validated	p.R1292C	1.000	20	0%	13	38.5%	18	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
DOCK2	1794	genome.wustl.edu	37	5	169472845	169472845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004946.2	+1	validated	p.C1301Y	1.000	176	0%	186	14%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NPM1	4869	genome.wustl.edu	37	5	170833402	170833402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001037738.2	+1	reviewed	p.A258V	0.804	316	0%	392	32.1%	45	77.7%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
SH3PXD2B	285590	genome.wustl.edu	37	5	171833330	171833330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001017995.2	-1	validated	p.M61I	1.000	242	0%	263	34.2%	2	0%	benign(0.002)	tolerated(1)	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
TSPAN17	26262	genome.wustl.edu	37	5	176078876	176078876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012171.1	+1	validated	p.R87Q	0.997	205	0%	205	30.7%	23	30.4%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Tetraspannin,PatternScan_TM4_1
UNC5A	90249	genome.wustl.edu	37	5	176295130	176295130	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_133369.2	+1	validated	e3-1	1.000	55	0%	70	37.1%	0	-	-	-	-	-
UIMC1	51720	genome.wustl.edu	37	5	176396247	176396248	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016290.3	-1	provisional	p.I170fs	0.911:0.190	-	-	-	-	-	-	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176636892	176636892	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022455.4	+1	reviewed	p.R498*	0.956	129	0%	134	38.1%	0	-	-	-	-	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179290628	179290628	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198868.2	-1	validated	p.T1191	0.018	36	0%	53	26.4%	320	31.8%	-	-	-	NULL
SERPINB9	5272	genome.wustl.edu	37	6	2890513	2890513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004155.4	-1	validated	p.A339T	0.000	77	0%	77	29.9%	18	5.5%	benign(0.001)	tolerated(0.79)	neutral(0.001)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
DSP	1832	genome.wustl.edu	37	6	7580324	7580324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004415.2	+1	reviewed	p.Q1301*	1.000	43	0%	64	35.9%	4	25%	-	-	-	NULL
FAM8A1	51439	genome.wustl.edu	37	6	17608570	17608570	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016255.2	+1	validated	p.*414W	1.000	145	0%	137	24.1%	1	100%	-	-	-	NULL
SLC17A2	10246	genome.wustl.edu	37	6	25916038	25916040	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005835.2	-1	validated	p.G330in_frame_del	1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ZNF192	7745	genome.wustl.edu	37	6	28121056	28121056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006298.2	+1	validated	p.Q333R	0.944	184	0%	192	28.6%	2	50%	probably_damaging(0.962)	tolerated(0.59)	neutral(0.410)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SCAND3	114821	genome.wustl.edu	37	6	28554398	28554398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052923.1	-1	provisional	p.T33A	0.000	254	0%	239	29.7%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
RPP21	79897	genome.wustl.edu	37	6	30314232	30314232	+	Missense_Mutation	SNP	G	G	A	rs148620646	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024839.1	+1	provisional	p.V89I	0.986	39	0%	60	40%	208	41.3%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_Rpr2
BAG6	7917	genome.wustl.edu	37	6	31607320	31607320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004639.3	-1	reviewed	p.R1087Q	1.000	110	0%	132	35.6%	32	18.7%	possibly_damaging(0.763)	tolerated(0.3)	neutral(0.311)	NULL
C6orf25	80739	genome.wustl.edu	37	6	31691597	31691597	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_138272.1	+1	reviewed	p.V81	0.011	26	0%	40	27.5%	0	-	-	-	-	NULL
RING1	6015	genome.wustl.edu	37	6	33179715	33179715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002931.3	+1	reviewed	p.S352N	1.000	43	0%	32	43.8%	39	17.9%	unknown(0)	tolerated(0.59)	-	NULL
RGL2	5863	genome.wustl.edu	37	6	33263160	33263160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004761.3	-1	validated	p.V354M	0.771	54	0%	61	41%	18	50%	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ITPR3	3710	genome.wustl.edu	37	6	33634929	33634929	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002224.2	+1	validated	p.P525	0.006	65	0%	90	37.8%	9	33.3%	-	-	-	HMMPfam_RYDR_ITPR,superfamily_SSF100909
MLN	4295	genome.wustl.edu	37	6	33768882	33768882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002418.2	-1	reviewed	p.A20V	0.996	49	0%	76	30.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MDGA1	266727	genome.wustl.edu	37	6	37622621	37622621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_153487.3	-1	validated	p.G223S	0.976	185	0%	200	40.5%	0	-	benign(0.018)	tolerated(0.1)	neutral(0.287)	HMMSmart_SM00409,superfamily_Immunoglobulin
DAAM2	23500	genome.wustl.edu	37	6	39867872	39867872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015345.2	+1	validated	p.R899H	0.507	67	0%	83	37.3%	3	0%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
LRFN2	57497	genome.wustl.edu	37	6	40359689	40359689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020737.1	-1	provisional	p.T788M	1.000	36	0%	61	18%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPL7L1	285855	genome.wustl.edu	37	6	42854004	42854004	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198486.2	+1	provisional	p.G181	0.998	435	0%	530	25.3%	40	20%	unknown(0)	deleterious(0)	-	superfamily_Ribosomal_L30
CUL9	23113	genome.wustl.edu	37	6	43152295	43152295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015089.2	+1	validated	p.R83W	0.912	138	0%	144	31.9%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
TMEM63B	55362	genome.wustl.edu	37	6	44116062	44116062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018426.1	+1	validated	p.V354E	1.000	72	0%	118	31.4%	108	51.8%	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	NULL
EYS	346007	genome.wustl.edu	37	6	65303024	65303024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142800.1	-1	reviewed	p.Y1288C	0.000	254	0.4%	236	25.4%	0	-	probably_damaging(0.956)	-	-	superfamily_Concanavalin A-like lectins/glucanases
EEF1A1	1915	genome.wustl.edu	37	6	74229068	74229068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001402.5	-1	reviewed	p.T106A	1.000	237	0%	224	24.1%	7615	31.5%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARMC2	84071	genome.wustl.edu	37	6	109274397	109274397	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032131.4	+1	validated	p.Q586	0.000	54	0%	64	20.3%	1	100%	-	-	-	superfamily_ARM-type_fold
LOC100287481	100287481	genome.wustl.edu	37	6	109786988	109786988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002342664.1	+1	model	p.R57H	0.000	115	0.9%	138	29%	3	33.3%	-	-	-	NULL
LOC100287430	100287430	genome.wustl.edu	37	6	116579866	116579866	+	RNA	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XR_078343.1	-1	model	NULL	1.000	49	0%	57	10.5%	2	0%	possibly_damaging(0.873)	-	-	-
DSE	29940	genome.wustl.edu	37	6	116757693	116757693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080976.1	+1	reviewed	p.A688T	0.997	83	0%	80	31.2%	16	12.5%	benign(0.006)	tolerated(0.32)	neutral(0.024)	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127765414	127765414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014702.4	-1	validated	p.V642A	0.999	103	0%	103	35%	2	0%	possibly_damaging(0.892)	tolerated(0.43)	neutral(0.365)	NULL
L3MBTL3	84456	genome.wustl.edu	37	6	130392134	130392134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032438.1	+1	validated	p.S369L	1.000	288	0%	342	30.1%	1	100%	probably_damaging(0.992)	tolerated(0.43)	neutral(0.461)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
EPB41L2	2037	genome.wustl.edu	37	6	131191053	131191053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001431.3	-1	validated	p.V753M	0.999	143	0%	149	26.8%	53	39.6%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	NULL
TAAR1	134864	genome.wustl.edu	37	6	132966459	132966459	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_138327.1	-1	provisional	p.N228	0.000	208	0%	211	40.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KIAA1244	57221	genome.wustl.edu	37	6	138584571	138584571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020340.4	+1	validated	p.R651W	1.000	47	0%	64	26.6%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_Sec7
KIAA1244	57221	genome.wustl.edu	37	6	138645227	138645227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020340.4	+1	validated	p.A1646V	1.000	18	0%	20	50%	10	30%	probably_damaging(0.998)	tolerated(0.4)	deleterious(0.490)	NULL
ADGB	79747	genome.wustl.edu	37	6	147047263	147047263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024694.3	+1	provisional	p.S761Y	0.023	252	0%	276	42%	0	-	benign(0.002)	tolerated(0.95)	-	NULL
UST	10090	genome.wustl.edu	37	6	149285599	149285599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005715.2	+1	validated	p.R194Q	1.000	161	0%	165	21.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_HS2ST
PPP1R14C	81706	genome.wustl.edu	37	6	150535929	150535929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_030949.2	+1	validated	p.A119V	1.000	282	0%	298	25.5%	8	0%	benign(0.002)	tolerated(0.19)	neutral(0.050)	HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor
IYD	389434	genome.wustl.edu	37	6	150690205	150690205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_203395.2	+1	reviewed	p.C13Y	1.000	116	0%	161	30.4%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152765701	152765701	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000367248	-1	known	p.A786V	0.470	146	0%	119	32.8%	0	-	-	-	-	superfamily_Spectrin repeat
RGS17	26575	genome.wustl.edu	37	6	153345472	153345472	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012419.4	-1	reviewed	p.E123	1.000	388	0%	429	31.9%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
SOD2	6648	genome.wustl.edu	37	6	160106041	160106041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000636.2	-1	reviewed	p.R123H	0.998	181	0%	195	36.4%	95	17.8%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Sod_Fe_C,superfamily_SODismutase
WTAP	9589	genome.wustl.edu	37	6	160164749	160164749	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004906.3	+1	reviewed	p.Q66	1.000	125	0%	144	37.5%	20	10%	-	-	-	NULL
MAP3K4	4216	genome.wustl.edu	37	6	161530935	161530935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005922.2	+1	reviewed	p.R1462H	0.016	107	0%	136	33.8%	59	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CCR6	1235	genome.wustl.edu	37	6	167550423	167550423	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004367.5	+1	reviewed	p.T235	0.055	245	0%	271	33.9%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
WDR27	253769	genome.wustl.edu	37	6	170058393	170058393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_182552.3	-1	validated	p.A461T	0.006	156	0%	164	22%	16	43.7%	benign(0.242)	tolerated(0.64)	neutral(0.028)	NULL
INTS1	26173	genome.wustl.edu	37	7	1523451	1523451	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080453.2	-1	validated	p.S1156	0.592	32	0%	39	28.2%	111	33.3%	-	-	-	NULL
INTS1	26173	genome.wustl.edu	37	7	1526307	1526307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080453.2	-1	validated	p.R977Q	1.000	24	0%	18	50%	27	29.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ELFN1	392617	genome.wustl.edu	37	7	1786588	1786588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001128636.2	+1	validated	p.R786W	1.000	18	0%	10	60%	5	0%	-	-	-	NULL
SNX8	29886	genome.wustl.edu	37	7	2314786	2314786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013321.1	-1	provisional	p.R127C	0.998	99	0%	111	44.1%	21	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
FOXK1	221937	genome.wustl.edu	37	7	4800834	4800834	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001037165.1	+1	validated	p.L612	0.615	20	0%	27	40.7%	10	10%	-	-	-	NULL
CYTH3	9265	genome.wustl.edu	37	7	6210230	6210230	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004227.3	-1	reviewed	p.D253	0.979	193	0%	216	28.7%	7	0%	-	-	-	superfamily_Sec7 domain
COL28A1	340267	genome.wustl.edu	37	7	7413150	7413150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001037763.2	-1	validated	p.P796L	0.992	109	0%	131	35.1%	3	66.6%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00327,superfamily_vWA-like
GLCCI1	113263	genome.wustl.edu	37	7	8095093	8095093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_138426.2	+1	validated	p.R243C	0.996	284	0%	355	33.2%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHF14	9678	genome.wustl.edu	37	7	11030443	11030443	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000303905	+1	known	p.Q338	1.000	412	0%	442	30.3%	3	33.3%	-	-	-	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
SP8	221833	genome.wustl.edu	37	7	20824186	20824186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_182700.4	-1	validated	p.R417H	1.000	5	0.000	12	0.500	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AVL9	23080	genome.wustl.edu	37	7	32612990	32612990	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015060.1	+1	provisional	p.A510	0.011	101	0%	140	34.3%	19	52.6%	-	-	-	HMMPfam_Avl9
KIAA0895	23366	genome.wustl.edu	37	7	36374749	36374749	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001100425.1	-1	validated	p.A302	0.407	127	0%	140	28.6%	1	100%	-	-	-	NULL
TRGV3	6976	genome.wustl.edu	37	7	38398343	38398343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000390346	-1	known	p.D42N	0.006	242	0%	273	32.6%	2	0%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_V-set,superfamily_Immunoglobulin
GLI3	2737	genome.wustl.edu	37	7	42004970	42004970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000168.5	-1	reviewed	p.S1234N	0.000	46	0%	57	10.5%	1	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
TBRG4	9238	genome.wustl.edu	37	7	45144233	45144233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004749.2	-1	validated	p.R271W	0.998	41	0%	50	20%	96	34.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUN3	256979	genome.wustl.edu	37	7	48033954	48033954	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000453071	-1	known	p.R197H	0.778	228	0%	307	27%	0	-	-	-	-	HMMPfam_Sad1_UNC
EGFR	1956	genome.wustl.edu	37	7	55242454	55242454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005228.3	+1	reviewed	p.V742I	1.000	138	0%	151	29.8%	2	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
ENSG00000247634	0	genome.wustl.edu	37	7	66416154	66416154	+	RNA	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000500273	-1	known	NULL	0.000	44	0%	58	37.9%	0	-	-	-	-	-
WBSCR17	64409	genome.wustl.edu	37	7	70885903	70885903	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022479.1	+1	reviewed	p.P258	0.086	88	0%	126	35.7%	2	0%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
CLIP2	7461	genome.wustl.edu	37	7	73752969	73752969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003388.4	+1	reviewed	p.P105S	1.000	44	0%	61	34.4%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain
STYXL1	51657	genome.wustl.edu	37	7	75625777	75625777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000341238	-1	known	p.E280K	0.001	209	0%	225	28.4%	35	51.4%	benign(0.012)	-	-	NULL
KIAA1324L	222223	genome.wustl.edu	37	7	86541476	86541476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142749.2	-1	validated	p.S694N	0.981	160	0%	164	34.8%	0	-	possibly_damaging(0.5)	tolerated(1)	neutral(0.167)	superfamily_Mannose 6-phosphate receptor domain
COL1A2	1278	genome.wustl.edu	37	7	94029548	94029548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000089.3	+1	reviewed	p.P58H	0.010	105	0%	108	12%	403	5.2%	unknown(0)	tolerated(0.26)	-	HMMPfam_Collagen
PEG10	23089	genome.wustl.edu	37	7	94293686	94293686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001040152.1	+1	reviewed	p.P273L	0.984	20	0%	17	41.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97833343	97833343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014916.3	+1	reviewed	p.L1443P	0.233	120	0%	114	36%	2	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
PTCD1	26024	genome.wustl.edu	37	7	99022550	99022550	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015545.2	-1	validated	p.D535	1.000	64	0%	99	35.4%	11	27.2%	-	-	-	HMMPfam_PPR
AZGP1	563	genome.wustl.edu	37	7	99564772	99564772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001185.3	-1	validated	p.R251W	0.000	74	0%	118	31.4%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
SRRT	51593	genome.wustl.edu	37	7	100485397	100485397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015908.5	+1	validated	p.A748V	0.914	130	0%	151	28.5%	65	12.3%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_ARS2
MOGAT3	346606	genome.wustl.edu	37	7	100839427	100839427	+	Silent	SNP	C	C	T	rs183966186	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000440203	-1	known	p.A304	0.000	33	0%	40	32.5%	0	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101747648	101747648	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_181552.2	+1	reviewed	p.R147*	1.000	169	0%	209	35.4%	1	0%	-	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102584675	102584675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001031692.2	+1	validated	p.T316I	0.996	74	0%	71	21.1%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
RELN	5649	genome.wustl.edu	37	7	103202103	103202103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005045.3	-1	reviewed	p.S1802L	0.986	227	0.4%	228	29.4%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
RINT1	60561	genome.wustl.edu	37	7	105183047	105183047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021930.4	+1	validated	p.E156K	1.000	182	0%	174	36.8%	2	50%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107684240	107684242	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007356.2	-1	validated	p.E1476in_frame_del	0.081:0.717:0.732	-	-	-	-	-	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114271582	114271582	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_148898.2	+1	reviewed	e6-1	0.135	29	0%	39	30.8%	0	-	-	-	-	-
CADPS2	93664	genome.wustl.edu	37	7	122033566	122033566	+	Silent	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000397721	-1	known	p.G582*	0.005	129	0%	189	33.9%	8	62.5%	-	-	-	NULL
METTL2B	55798	genome.wustl.edu	37	7	128140980	128140981	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018396.2	+1	reviewed	p.Y314fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TSGA13	114960	genome.wustl.edu	37	7	130353969	130353969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052933.2	-1	provisional	p.L238P	0.203	95	0%	141	27%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
CDK5	1020	genome.wustl.edu	37	7	150753861	150753861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004935.3	-1	validated	p.D73N	1.000	63	0%	98	34.7%	40	22.5%	benign(0.001)	tolerated(0.05)	neutral(0.345)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CDK5	1020	genome.wustl.edu	37	7	150754041	150754041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004935.3	-1	validated	p.R50W	0.676	130	0%	123	29.3%	32	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RNF32	140545	genome.wustl.edu	37	7	156469275	156469275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_030936.2	+1	reviewed	p.V339M	0.865	95	0%	116	25%	4	25%	benign(0.052)	tolerated(0.28)	neutral(0.035)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
DLGAP2	9228	genome.wustl.edu	37	8	1645370	1645370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004745.3	+1	reviewed	p.L872	1.000	12	0%	13	53.8%	0	-	-	-	-	HMMPfam_GKAP
MTMR7	9108	genome.wustl.edu	37	8	17218630	17218630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004686.4	-1	reviewed	p.Y155C	1.000	289	0%	357	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTUS1	57509	genome.wustl.edu	37	8	17612080	17612080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001001924.2	-1	reviewed	p.W413G	0.433	188	0%	219	33.3%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF395	55893	genome.wustl.edu	37	8	28207583	28207584	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018660.2	-1	validated	p.P442fs	1.000:0.971	-	-	-	-	-	-	-	-	-	NULL
NRG1	3084	genome.wustl.edu	37	8	32620786	32620786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013960.3	+1	reviewed	p.C440Y	1.000	243	0%	249	27.7%	2	0%	possibly_damaging(0.563)	deleterious(0)	deleterious(0.637)	HMMPfam_Neuregulin
WHSC1L1	54904	genome.wustl.edu	37	8	38173512	38173512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_023034.1	-1	reviewed	p.R635H	1.000	327	0%	345	32.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ANK1	286	genome.wustl.edu	37	8	41573293	41573293	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142446.1	-1	reviewed	p.N526	0.000	138	0%	187	35.8%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SLC20A2	6575	genome.wustl.edu	37	8	42275367	42275367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006749.3	-1	provisional	p.A638D	1.000	64	0%	49	26.5%	27	51.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HGSNAT	138050	genome.wustl.edu	37	8	43053074	43053074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152419.2	+1	reviewed	p.G569R	0.999	223	0%	299	33.8%	15	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2261
ENSG00000215179	0	genome.wustl.edu	37	8	47885954	47885954	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000399732	-1	known	p.L93	1.000	99	0%	85	27.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZFHX4	79776	genome.wustl.edu	37	8	77767647	77767647	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024721.4	+1	validated	p.S2785	0.000	102	1%	97	25.8%	0	-	-	-	-	NULL
CPNE3	8895	genome.wustl.edu	37	8	87568393	87568393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003909.3	+1	reviewed	p.A440T	1.000	238	0%	263	30.4%	16	31.2%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
ZHX2	22882	genome.wustl.edu	37	8	123966184	123966184	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014943.3	+1	reviewed	p.S812C	1.000	118	0%	132	25%	29	10.3%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
FER1L6	654463	genome.wustl.edu	37	8	124975572	124975572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039112.2	+1	validated	p.P44L	0.044	201	0%	225	32%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
MTSS1	9788	genome.wustl.edu	37	8	125565267	125565267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014751.4	-1	validated	p.T745M	0.000	217	0%	277	25.6%	0	-	benign(0.02)	tolerated(0.08)	neutral(0.301)	NULL
SLA	6503	genome.wustl.edu	37	8	134063091	134063091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006748.3	-1	validated	p.R84H	0.799	114	0%	117	26.5%	2	0%	benign(0.181)	tolerated(0.3)	neutral(0.045)	HMMPfam_SH3_1,HMMSmart_SM00326
ZFAT	57623	genome.wustl.edu	37	8	135614147	135614147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020863.3	-1	reviewed	p.S605	0.000	46	0%	70	25.7%	0	-	-	-	-	NULL
FAM135B	51059	genome.wustl.edu	37	8	139155256	139155256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015912.3	-1	validated	p.S1213G	1.000	208	0%	207	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases
DENND3	22898	genome.wustl.edu	37	8	142161874	142161874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014957.2	+1	validated	p.V258I	0.039	77	0%	88	45.5%	11	0%	benign(0.031)	tolerated(0.24)	neutral(0.039)	HMMPfam_DENN,HMMSmart_SM00799
GPR20	2843	genome.wustl.edu	37	8	142367040	142367040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005293.2	-1	validated	p.M328I	1.000	15	0%	21	28.6%	2	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	superfamily_Family A G protein-coupled receptor-like
FLJ43860	389690	genome.wustl.edu	37	8	142500217	142500217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_207414.2	-1	validated	p.E233K	0.491	11	0%	20	20%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
LYPD2	137797	genome.wustl.edu	37	8	143831823	143831823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_205545.1	-1	provisional	p.G86S	0.997	26	0%	29	17.2%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	HMMPfam_UPAR_LY6,HMMSmart_LU,superfamily_SSF57302
TONSL	4796	genome.wustl.edu	37	8	145662018	145662018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013432.4	-1	reviewed	p.R646H	0.001	26	0%	41	26.8%	15	53.3%	possibly_damaging(0.682)	tolerated(0.2)	neutral(0.292)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146107390	146107390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021061.3	-1	validated	p.S398N	0.007	146	0%	182	24.2%	22	36.3%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KCNV2	169522	genome.wustl.edu	37	9	2718738	2718738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000423608	+1	known	p.R285C	0.998	22	0%	21	42.9%	0	-	unknown(0)	deleterious(0)	-	NULL
SH3GL2	6456	genome.wustl.edu	37	9	17795741	17795741	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003026.2	+1	validated	p.*353Y	0.781	115	0%	166	31.3%	0	-	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32436296	32436296	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002197.2	+1	reviewed	p.D716	0.768	191	0%	247	33.6%	46	45.6%	-	-	-	HMMPfam_Aconitase_C,superfamily_Aconitase
TOPORS	10210	genome.wustl.edu	37	9	32543930	32543930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005802.3	-1	reviewed	p.P198H	0.098	166	0%	178	28.1%	3	0%	unknown(0)	tolerated(0.12)	-	NULL
NDUFB6	4712	genome.wustl.edu	37	9	32573023	32573023	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002493.3	-1	reviewed	p.L12	1.000	21	0%	18	22.2%	135	42.2%	-	-	-	HMMPfam_NDUF_B6
SMU1	55234	genome.wustl.edu	37	9	33073753	33073753	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018225.2	-1	validated	p.A26	0.000	170	0%	194	27.8%	25	40%	-	-	-	HMMSmart_SM00667
STOML2	30968	genome.wustl.edu	37	9	35101482	35101482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013442.1	-1	provisional	p.R174C	1.000	147	0%	167	29.3%	82	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Band_7,HMMSmart_PHB
RECK	8434	genome.wustl.edu	37	9	36091184	36091184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021111.2	+1	reviewed	p.S310N	1.000	173	0%	177	28.8%	1	0%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	NULL
TJP2	9414	genome.wustl.edu	37	9	71835938	71835938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004817.3	+1	reviewed	p.R160W	1.000	59	0%	85	31.8%	2	50%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
GNAQ	2776	genome.wustl.edu	37	9	80336317	80336317	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002072.2	-1	provisional	p.T334	0.998	258	0%	307	35.5%	14	50%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP78	84131	genome.wustl.edu	37	9	80851320	80851320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001098802.1	+1	validated	p.H18Q	1.000	9	0.000	13	0.385	3	33.3%	benign(0.244)	deleterious(0.01)	neutral(0.430)	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88937965	88937965	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024617.3	-1	validated	p.G900	0.000	183	0%	167	24.6%	6	0%	-	-	-	NULL
SLC35D2	11046	genome.wustl.edu	37	9	99084343	99084343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007001.2	-1	validated	p.I284N	1.000	235	0%	258	31.4%	13	53.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_TPT
ANKS6	203286	genome.wustl.edu	37	9	101536174	101536174	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000444472	-1	known	p.R71W	0.045	24	0%	20	45%	2	100%	-	-	-	NULL
EPB41L4B	54566	genome.wustl.edu	37	9	112017854	112017854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_019114.3	-1	validated	p.T369M	0.040	122	0%	142	35.2%	19	52.6%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	HMMPfam_FERM_C,superfamily_PH domain-like
LPAR1	1902	genome.wustl.edu	37	9	113704159	113704159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001401.3	-1	reviewed	p.N112S	1.000	106	0%	109	22.9%	5	0%	benign(0.382)	tolerated(0.37)	neutral(0.141)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DBC1	1620	genome.wustl.edu	37	9	121971091	121971091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014618.2	-1	validated	p.A351T	1.000	237	0%	260	25.4%	0	-	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
FBXW2	26190	genome.wustl.edu	37	9	123540779	123540779	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012164.3	-1	reviewed	p.Q179*	1.000	65	0%	72	31.9%	15	6.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
URM1	81605	genome.wustl.edu	37	9	131151567	131151567	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001135947.1	+1	validated	p.N72	0.940	56	0%	67	35.8%	90	33.3%	-	-	-	HMMPfam_Urm1
ASB6	140459	genome.wustl.edu	37	9	132400352	132400352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017873.2	-1	reviewed	p.T328I	0.939	86	0%	110	29.1%	31	16.1%	benign(0.014)	tolerated(0.36)	neutral(0.021)	NULL
NUP214	8021	genome.wustl.edu	37	9	134002928	134002928	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005085.2	+1	reviewed	p.A21	0.063	229	0%	240	26.3%	4	25%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134340363	134340363	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013318.3	+1	validated	p.R540*	0.999	44	0%	54	25.9%	12	25%	-	-	-	NULL
ABCA2	20	genome.wustl.edu	37	9	139910599	139910599	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000479446	-1	known	p.Q394R	0.583	42	0%	31	19.4%	21	9.5%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PNPLA7	375775	genome.wustl.edu	37	9	140391722	140391722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001098537.1	-1	validated	p.G644S	0.999	15	0%	30	36.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
CACNA1B	774	genome.wustl.edu	37	9	140772631	140772631	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000718.2	+1	validated	p.N82	1.000	29	0%	21	33.3%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
PHYH	5264	genome.wustl.edu	37	10	13330437	13330437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006214.3	-1	reviewed	p.R201W	0.103	37	0%	41	36.6%	16	43.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PhyH
PLXDC2	84898	genome.wustl.edu	37	10	20534320	20534320	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032812.7	+1	provisional	p.H453	1.000	278	0%	346	28.3%	18	38.8%	-	-	-	NULL
SVIL	6840	genome.wustl.edu	37	10	29812498	29812498	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021738.2	-1	reviewed	p.P1015	0.015	248	0%	229	34.5%	2	0%	-	-	-	NULL
LOC728064	728064	genome.wustl.edu	37	10	43197473	43197473	+	RNA	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XR_015196.2	-1	model	NULL	0.000	103	0%	101	24.8%	0	-	-	-	-	-
GPRIN2	9721	genome.wustl.edu	37	10	46999756	46999756	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014696.3	+1	validated	p.C292	1.000	70	0%	72	15.3%	0	-	-	-	-	NULL
PPYR1	5540	genome.wustl.edu	37	10	47087064	47087064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005972.4	+1	validated	p.C94Y	1.000	248	0%	247	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANK3	288	genome.wustl.edu	37	10	61822901	61822901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020987.2	-1	reviewed	p.D4188G	1.000	226	0.9%	214	33.6%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DEATH_like
MYPN	84665	genome.wustl.edu	37	10	69934251	69934251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032578.2	+1	validated	p.I801T	0.492	321	0%	302	28.8%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
CHST3	9469	genome.wustl.edu	37	10	73767297	73767297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004273.4	+1	reviewed	p.R170C	1.000	11	0%	14	42.9%	12	8.3%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
TTC18	118491	genome.wustl.edu	37	10	75104841	75104841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145170.3	-1	validated	p.Q197H	0.998	79	0%	76	11.8%	0	-	probably_damaging(0.986)	tolerated(0.27)	neutral(0.468)	NULL
PTEN	5728	genome.wustl.edu	37	10	89712011	89712011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000371953	+1	known	p.T210fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PLCE1	51196	genome.wustl.edu	37	10	96066255	96066255	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016341.3	+1	reviewed	p.G1898	0.993	180	0%	217	38.2%	17	35.2%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RRP12	23223	genome.wustl.edu	37	10	99126844	99126844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015179.3	-1	validated	p.R1001C	1.000	80	0%	95	23.2%	29	51.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
KCNIP2	30819	genome.wustl.edu	37	10	103590857	103590857	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014591.4	-1	reviewed	p.G47	0.995	45	0%	60	26.7%	0	-	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105182764	105182764	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014976.1	+1	validated	p.T839	0.005	135	0%	167	29.3%	12	33.3%	-	-	-	NULL
SHOC2	8036	genome.wustl.edu	37	10	112767399	112767399	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007373.3	+1	reviewed	p.L424	0.475	230	0.4%	261	33.7%	1	100%	-	-	-	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
NRAP	4892	genome.wustl.edu	37	10	115381869	115381869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198060.2	-1	validated	p.S843L	0.958	178	0%	183	30.1%	0	-	possibly_damaging(0.8)	tolerated(0.14)	deleterious(0.550)	HMMPfam_Nebulin,HMMSmart_SM00227
GRK5	2869	genome.wustl.edu	37	10	121196346	121196346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005308.2	+1	reviewed	p.V308I	1.000	48	0%	91	28.6%	3	0%	benign(0.007)	tolerated(0.16)	neutral(0.059)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PLEKHA1	59338	genome.wustl.edu	37	10	124189205	124189205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000368988	+1	known	p.P336H	1.000	203	0%	186	33.3%	18	22.2%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127422028	127422028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015608.2	+1	validated	p.S361Y	1.000	78	0%	82	28%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
DHX32	55760	genome.wustl.edu	37	10	127527584	127527584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018180.2	-1	reviewed	p.G623S	0.999	146	0%	202	32.7%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1605
FAM196A	642938	genome.wustl.edu	37	10	128973602	128973602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039762.2	-1	validated	p.T353M	0.312	104	0%	114	23.7%	1	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
FAM196A	642938	genome.wustl.edu	37	10	128973720	128973720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039762.2	-1	validated	p.L314M	1.000	37	0%	38	26.3%	0	-	possibly_damaging(0.852)	tolerated(0.26)	neutral(0.362)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129207592	129207592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000398025	+1	known	p.T1472I	1.000	215	0%	216	36.6%	1	0%	benign(0.053)	tolerated(0.07)	neutral(0.323)	NULL
MKI67	4288	genome.wustl.edu	37	10	129921155	129921155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002417.4	-1	reviewed	p.R93C	1.000	209	0%	212	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SMAD/FHA domain
LRRC27	80313	genome.wustl.edu	37	10	134169377	134169377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001143757.1	+1	validated	p.P386L	0.000	67	0%	89	29.2%	1	100%	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
NKX6-2	84504	genome.wustl.edu	37	10	134598588	134598588	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_177400.2	-1	validated	p.A222	1.000	62	0%	79	40.5%	0	-	-	-	-	NULL
GPR123	84435	genome.wustl.edu	37	10	134902411	134902411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000392609	+1	known	p.L365F	1.000	6	0.000	14	0.357	0	-	unknown(0)	-	-	NULL
PHRF1	57661	genome.wustl.edu	37	11	609696	609696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020901.2	+1	validated	p.A1413T	0.000	12	0%	11	36.4%	15	33.3%	benign(0.087)	tolerated(0.81)	neutral(0.007)	NULL
PIDD	55367	genome.wustl.edu	37	11	800881	800881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145886.2	-1	reviewed	p.V600M	0.538	10	0%	10	50%	30	23.3%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
PNPLA2	57104	genome.wustl.edu	37	11	822398	822398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020376.2	+1	provisional	p.R163H	1.000	75	0%	70	24.3%	270	25.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
MUC5B	727897	genome.wustl.edu	37	11	1268392	1268392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002458.1	+1	validated	p.A3431T	0.000	669	0%	767	19.6%	44	29.5%	unknown(0)	-	-	NULL
TSSC4	10078	genome.wustl.edu	37	11	2424406	2424406	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005706.2	+1	reviewed	p.T181	0.012	29	0%	23	47.8%	92	31.5%	-	-	-	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2972531	2972531	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005969.3	-1	reviewed	p.D360	0.935	395	0.3%	402	23.4%	82	28%	-	-	-	NULL
CARS	833	genome.wustl.edu	37	11	3039695	3039695	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001014437.1	-1	reviewed	p.T524	0.048	134	0%	131	38.9%	24	29.1%	-	-	-	HMMPfam_tRNA-synt_1e,superfamily_SSF52374
OR52D1	390066	genome.wustl.edu	37	11	5510726	5510726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001005163.2	+1	validated	p.T264A	0.099	279	0%	381	32.5%	0	-	probably_damaging(0.991)	tolerated(0.22)	deleterious(0.486)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR56A1	120796	genome.wustl.edu	37	11	6048011	6048012	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001001917.2	-1	validated	p.Q308fs	0.189:0.306	-	-	-	-	-	-	-	-	-	superfamily_SSF81321
DNHD1	144132	genome.wustl.edu	37	11	6592508	6592508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144666.2	+1	provisional	p.P4589L	0.973	38	0%	42	31%	14	28.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dynein_heavy
C11orf16	56673	genome.wustl.edu	37	11	8947357	8947357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020643.2	-1	validated	p.P286L	0.000	49	0%	42	28.6%	3	33.3%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
SWAP70	23075	genome.wustl.edu	37	11	9771475	9771476	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015055.2	+1	validated	p.K576fs	0.738:0.782	-	-	-	-	-	-	-	-	-	NULL
GALNTL4	374378	genome.wustl.edu	37	11	11362546	11362546	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198516.2	-1	validated	p.W366*	1.000	76	0%	95	30.5%	11	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
SLC6A5	9152	genome.wustl.edu	37	11	20636346	20636346	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004211.3	+1	reviewed	p.S369	0.989	233	0.4%	206	37.9%	0	-	-	-	-	HMMPfam_SNF
CSTF3	1479	genome.wustl.edu	37	11	33127159	33127159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001326.2	-1	reviewed	p.M180T	1.000	245	0%	291	36.1%	1	100%	possibly_damaging(0.944)	tolerated(0.5)	neutral(0.399)	HMMSmart_SM00386,superfamily_TPR-like
CAT	847	genome.wustl.edu	37	11	34478311	34478311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001752.3	+1	reviewed	p.D335N	1.000	140	0%	129	41.9%	55	29%	probably_damaging(0.997)	tolerated(0.31)	deleterious(0.493)	superfamily_Catalase_N,HMMPfam_Catalase
TTC17	55761	genome.wustl.edu	37	11	43469634	43469634	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018259.5	+1	validated	p.I916	0.995	88	0%	89	32.6%	13	38.4%	-	-	-	superfamily_SSF48452
PRDM11	56981	genome.wustl.edu	37	11	45246271	45246271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020229.2	+1	validated	p.R450C	0.974	72	0%	80	38.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHRM4	1132	genome.wustl.edu	37	11	46407117	46407117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000741.2	-1	reviewed	p.R331W	0.012	140	0%	135	31.1%	1	100%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CELF1	10658	genome.wustl.edu	37	11	47498872	47498872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001025596.2	-1	reviewed	p.P290L	1.000	172	0%	192	31.8%	22	31.8%	unknown(0)	tolerated(0.13)	-	NULL
OR5W2	390148	genome.wustl.edu	37	11	55681162	55681162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001001960.1	-1	provisional	p.E299D	0.001	79	0%	82	37.8%	0	-	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_SSF81321
MPEG1	219972	genome.wustl.edu	37	11	58978238	58978238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039396.1	-1	validated	p.A701T	0.000	280	0.4%	304	34.2%	8	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
MS4A1	931	genome.wustl.edu	37	11	60229914	60229914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021950.3	+1	reviewed	p.M23L	0.000	128	0%	156	30.1%	2	0%	benign(0.011)	tolerated(0.17)	neutral(0.059)	NULL
DAK	26007	genome.wustl.edu	37	11	61110107	61110107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015533.3	+1	reviewed	p.A251V	0.000	66	0%	85	42.4%	107	39.2%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Dak1,superfamily_DAK1/DegV-like
INCENP	3619	genome.wustl.edu	37	11	61897513	61897513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001040694.1	+1	validated	p.G172S	0.000	28	0%	26	50%	25	44%	benign(0.078)	tolerated(1)	neutral(0.005)	NULL
EEF1G	1937	genome.wustl.edu	37	11	62339366	62339366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001404.4	-1	reviewed	p.A60V	1.000	141	0%	165	30.9%	2697	34.7%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_GST_N,superfamily_Thioredoxin-like
PLCB3	5331	genome.wustl.edu	37	11	64026008	64026008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000932.2	+1	reviewed	p.R359H	1.000	43	0%	58	27.6%	26	3.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
ACTN3	89	genome.wustl.edu	37	11	66325338	66325338	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001104.1	+1	reviewed	p.Q356*	1.000	96	0%	97	23.7%	0	-	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
SHANK2	22941	genome.wustl.edu	37	11	70332333	70332333	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012309.3	-1	reviewed	p.T760	0.952	83	0%	93	26.9%	11	0%	-	-	-	NULL
SHANK2	22941	genome.wustl.edu	37	11	70507860	70507860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012309.3	-1	reviewed	p.V5I	1.000	60	0%	81	34.6%	0	-	possibly_damaging(0.444)	tolerated(0.1)	neutral(0.431)	NULL
SHANK2	22941	genome.wustl.edu	37	11	70858349	70858349	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000338508	-1	known	p.S8	0.993	71	0%	95	32.6%	1	0%	-	-	-	NULL
IL18BP	10068	genome.wustl.edu	37	11	71712523	71712523	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039659.1	+1	reviewed	p.H144	0.010	39	0%	54	40.7%	110	3.6%	-	-	-	superfamily_Immunoglobulin
ARHGEF17	9828	genome.wustl.edu	37	11	73021677	73021677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014786.3	+1	validated	p.T665I	0.000	60	0%	71	31%	14	7.1%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78423680	78423680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001098816.2	-1	validated	p.R1301W	1.000	106	0%	119	31.1%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_SSF101898,superfamily_TolB_C
PRCP	5547	genome.wustl.edu	37	11	82560123	82560123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_199418.2	-1	reviewed	p.F318L	1.000	137	0%	139	35.3%	31	54.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_S28
FAT3	120114	genome.wustl.edu	37	11	92616191	92616191	+	Missense_Mutation	SNP	C	C	T	rs186899262	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001008781.2	+1	validated	p.T4190M	1.000	63	0%	59	32.2%	0	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
KDM4D	55693	genome.wustl.edu	37	11	94730903	94730903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018039.2	+1	validated	p.R123*	0.496	99	0%	115	31.3%	0	-	-	-	-	NULL
SESN3	143686	genome.wustl.edu	37	11	94924618	94924618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144665.2	-1	provisional	p.R98C	1.000	144	0%	148	37.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PA26
MAML2	84441	genome.wustl.edu	37	11	95825683	95825683	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032427.1	-1	validated	p.S504	0.018	36	0%	59	39%	3	0%	-	-	-	NULL
ZBTB16	7704	genome.wustl.edu	37	11	113934474	113934474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001018011.1	+1	reviewed	p.R151Q	0.990	41	0%	40	35%	0	-	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	NULL
HYOU1	10525	genome.wustl.edu	37	11	118919064	118919064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001130991.1	-1	reviewed	p.E758K	1.000	57	0%	67	20.9%	80	25%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
HINFP	25988	genome.wustl.edu	37	11	119002692	119002692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015517.3	+1	validated	p.Q226*	1.000	83	0%	81	37%	16	18.7%	-	-	-	superfamily_SSF57667
OR8G5	219865	genome.wustl.edu	37	11	124120682	124120682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000341493	+1	known	p.T87I	0.000	384	0%	463	30.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SNX19	399979	genome.wustl.edu	37	11	130749537	130749537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014758.2	-1	validated	p.Q943R	1.000	348	0%	307	30.3%	17	35.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Nexin_C
FKBP4	2288	genome.wustl.edu	37	12	2908295	2908295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002014.3	+1	reviewed	p.R186W	1.000	85	0%	77	32.5%	61	49.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP_C,superfamily_SSF54534
CD4	920	genome.wustl.edu	37	12	6924064	6924064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000616.3	+1	validated	p.V171	0.012	108	0%	107	21.5%	10	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set,superfamily_Immunoglobulin
PTPN6	5777	genome.wustl.edu	37	12	7069996	7069996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_080549.3	+1	reviewed	p.C615Y	0.981	111	0%	97	33%	240	25%	unknown(0)	-	-	NULL
ETNK1	55500	genome.wustl.edu	37	12	22812025	22812025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018638.4	+1	reviewed	p.L254P	1.000	241	0%	297	33%	0	-	benign(0.037)	tolerated(0.27)	neutral(0.036)	HMMPfam_Choline_kinase,superfamily_Kinase_like
KIF21A	55605	genome.wustl.edu	37	12	39756911	39756911	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017641.3	-1	validated	p.L336	0.900	310	0%	303	17.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRK2	120892	genome.wustl.edu	37	12	40687426	40687426	+	Missense_Mutation	SNP	G	G	T	rs58559150		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198578.3	+1	reviewed	p.Q923H	0.717	195	0%	196	27.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52058
TMEM106C	79022	genome.wustl.edu	37	12	48358192	48358192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001143842.1	+1	validated	p.G58D	1.000	69	0%	85	18.8%	194	24.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1356
MLL2	8085	genome.wustl.edu	37	12	49427679	49427679	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003482.3	-1	validated	p.Q3603	1.000	39	0%	29	17.2%	8	0%	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50745160	50745160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145475.1	-1	provisional	p.P1819S	0.001	38	0%	38	39.5%	0	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
OR10P1	121130	genome.wustl.edu	37	12	56031110	56031110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_206899.1	+1	provisional	p.M145I	0.957	52	0%	71	38%	0	-	possibly_damaging(0.442)	deleterious(0)	deleterious(0.589)	HMMPfam_7tm_1,superfamily_SSF81321
DGKA	1606	genome.wustl.edu	37	12	56346873	56346873	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001345.4	+1	reviewed	p.E664	1.000	194	0%	235	21.7%	45	2.2%	-	-	-	HMMPfam_DAGK_acc,HMMSmart_SM00045
ERBB3	2065	genome.wustl.edu	37	12	56478854	56478854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001982.2	+1	reviewed	p.V104M	0.994	96	0%	114	28.9%	48	41.6%	possibly_damaging(0.547)	deleterious(0)	deleterious(0.630)	HMMPfam_Recep_L_domain,superfamily_L domain-like
COQ10A	93058	genome.wustl.edu	37	12	56661712	56661712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144576.3	+1	validated	p.R90H	1.000	105	0%	131	23.7%	13	7.6%	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	NULL
C12orf56	115749	genome.wustl.edu	37	12	64679739	64679739	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001099676.2	-1	validated	p.E245	1.000	256	0%	221	26.2%	1	100%	-	-	-	NULL
CCT2	10576	genome.wustl.edu	37	12	69981367	69981367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006431.2	+1	reviewed	p.V76A	1.000	237	0%	237	24.1%	37	35.1%	benign(0.107)	deleterious(0.04)	neutral(0.357)	PatternScan_TCP1_2,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
ENSG00000246966	0	genome.wustl.edu	37	12	70932537	70932537	+	RNA	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000501222	+1	known	NULL	0.002	31	0%	24	50%	0	-	-	-	-	-
PPP1R12A	4659	genome.wustl.edu	37	12	80226140	80226140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001143885.1	-1	reviewed	p.A207S	1.000	136	0.7%	187	35.3%	4	25%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
OTOGL	283310	genome.wustl.edu	37	12	80613571	80613573	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002343203.1	+1	model	p.F16in_frame_del	0.783:0.235:0.100	-	-	-	-	-	-	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88508280	88508280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_025114.3	-1	reviewed	p.A657T	1.000	507	0%	549	12.9%	0	-	benign(0.195)	tolerated(0.08)	neutral(0.319)	NULL
TMTC3	160418	genome.wustl.edu	37	12	88570093	88570093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_181783.3	+1	reviewed	p.P477A	1.000	160	0%	183	41%	1	0%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans
SOCS2	8835	genome.wustl.edu	37	12	93968756	93968756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003877.3	+1	reviewed	p.C133Y	1.000	157	0%	165	32.7%	3	0%	benign(0.272)	deleterious(0.05)	neutral(0.374)	HMMSmart_SM00252,superfamily_SH2 domain
CRADD	8738	genome.wustl.edu	37	12	94243917	94243917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003805.3	+1	reviewed	p.Q157P	1.000	49	0%	36	36.1%	24	37.5%	possibly_damaging(0.564)	tolerated(0.12)	neutral(0.453)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
HAL	3034	genome.wustl.edu	37	12	96370474	96370474	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002108.2	-1	reviewed	p.I555	0.918	113	0%	143	33.6%	0	-	-	-	-	HMMPfam_PAL,superfamily_L-Aspartase-like
NUP37	79023	genome.wustl.edu	37	12	102492925	102492925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024057.2	-1	provisional	p.E136D	0.984	186	0%	213	35.2%	10	50%	benign(0.013)	tolerated(0.26)	neutral(0.035)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CHST11	50515	genome.wustl.edu	37	12	105151183	105151183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018413.5	+1	validated	p.R221W	1.000	145	0%	161	39.1%	22	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfotransfer_2
USP30	84749	genome.wustl.edu	37	12	109519795	109519795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032663.3	+1	validated	p.R280W	1.000	175	0%	244	13.5%	3	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_UCH,superfamily_SSF54001
BRAP	8315	genome.wustl.edu	37	12	112121021	112121021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006768.3	-1	reviewed	p.A58V	1.000	245	0%	260	24.6%	1	0%	benign(0.221)	tolerated(0.07)	neutral(0.341)	NULL
ACAD10	80724	genome.wustl.edu	37	12	112184917	112184917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001136538.1	+1	reviewed	p.A805V	0.224	103	0%	107	31.8%	15	20%	benign(0.051)	deleterious(0)	neutral(0.448)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
TPCN1	53373	genome.wustl.edu	37	12	113722564	113722564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001143819.1	+1	validated	p.V553I	1.000	378	0.3%	439	21.6%	8	12.5%	benign(0.002)	tolerated(0.78)	neutral(0.001)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CIT	11113	genome.wustl.edu	37	12	120150106	120150106	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007174.1	-1	validated	p.C1535	1.000	321	0%	352	12.8%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MLXIP	22877	genome.wustl.edu	37	12	122623409	122623409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000319080	+1	known	p.R811H	1.000	133	0%	124	40.3%	5	40%	benign(0.046)	tolerated(0.49)	neutral(0.013)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123082350	123082350	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014708.4	+1	reviewed	p.G1476	0.718	110	0%	147	34.7%	0	-	-	-	-	NULL
GLT1D1	144423	genome.wustl.edu	37	12	129373250	129373250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144669.1	+1	provisional	p.E95G	0.944	203	0%	220	31.8%	0	-	benign(0.235)	deleterious(0.03)	neutral(0.388)	NULL
NOC4L	79050	genome.wustl.edu	37	12	132632258	132632258	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024078.1	+1	provisional	p.D178	0.029	26	0%	33	33.3%	38	34.2%	-	-	-	NULL
SLC7A1	6541	genome.wustl.edu	37	13	30097541	30097541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003045.4	-1	validated	p.V304A	1.000	45	0%	28	35.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SOHLH2	54937	genome.wustl.edu	37	13	36748898	36748898	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017826.2	-1	validated	p.K250N	0.824	171	0%	165	31.5%	1	0%	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
FREM2	341640	genome.wustl.edu	37	13	39265724	39265724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_207361.4	+1	reviewed	p.G1415R	0.997	149	0%	177	37.3%	0	-	possibly_damaging(0.734)	tolerated(0.51)	neutral(0.278)	NULL
FOXO1	2308	genome.wustl.edu	37	13	41134076	41134078	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TCA	TCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002015.3	-1	reviewed	p.M517in_frame_del	0.902:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ATP7B	540	genome.wustl.edu	37	13	52509771	52509771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000053.2	-1	reviewed	p.A1361V	0.999	37	0%	31	45.2%	4	75%	possibly_damaging(0.86)	tolerated(0.25)	neutral(0.369)	NULL
RNF219	79596	genome.wustl.edu	37	13	79190943	79190943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024546.3	-1	validated	p.S318T	0.525	253	0%	253	18.6%	6	0%	benign(0.034)	tolerated(0.12)	neutral(0.263)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329698	88329698	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015567.1	+1	validated	p.F685	0.998	157	0%	159	35.2%	1	0%	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	101795543	101795543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052867.2	-1	validated	p.R669H	1.000	409	0%	453	32.9%	0	-	probably_damaging(0.979)	tolerated(0.16)	deleterious(0.481)	NULL
GAS6	2621	genome.wustl.edu	37	13	114538569	114538569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000820.2	-1	reviewed	p.A210V	0.686	27	0%	18	33.3%	96	13.5%	benign(0.083)	deleterious(0.01)	neutral(0.412)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
TMEM55B	90809	genome.wustl.edu	37	14	20927803	20927803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001100814.1	-1	validated	p.C184Y	1.000	157	0%	135	20%	35	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Tmemb_55A
PNP	4860	genome.wustl.edu	37	14	20943404	20943404	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000270.3	+1	reviewed	p.D215	0.997	132	0%	159	36.5%	89	41.5%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_SSF53167
HAUS4	54930	genome.wustl.edu	37	14	23416865	23416865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017815.2	-1	reviewed	p.R262C	0.729	88	0%	124	32.3%	77	42.8%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
CDH24	64403	genome.wustl.edu	37	14	23524530	23524530	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022478.3	-1	validated	p.R78	1.000	96	0%	114	29.8%	4	50%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ACIN1	22985	genome.wustl.edu	37	14	23528502	23528503	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014977.3	-1	validated	p.E1294fs	0.413:0.452	-	-	-	-	-	-	-	-	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23852435	23852435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002471.3	-1	validated	p.A1887V	1.000	78	0%	88	35.2%	0	-	benign(0.362)	tolerated(0.06)	neutral(0.438)	HMMPfam_Myosin_tail_1
PRKD1	5587	genome.wustl.edu	37	14	30135304	30135304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002742.2	-1	validated	p.R172C	0.995	183	0%	202	30.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
MDGA2	161357	genome.wustl.edu	37	14	47770653	47770653	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001113498.1	-1	validated	p.L58	0.913	167	0%	175	29.1%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
KTN1	3895	genome.wustl.edu	37	14	56134037	56134037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001079521.1	+1	validated	p.P1086T	0.997	248	0%	249	32.9%	7	57.1%	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	NULL
C14orf38	729665	genome.wustl.edu	37	14	60030474	60030474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000281581	-1	known	p.T275I	0.155	300	0%	343	30.6%	0	-	benign(0.356)	tolerated(0.26)	neutral(0.147)	NULL
SPTB	6710	genome.wustl.edu	37	14	65266574	65266574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001024858.2	-1	reviewed	p.E319K	1.000	129	0%	136	35.3%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ZFYVE26	23503	genome.wustl.edu	37	14	68241778	68241778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015346.3	-1	reviewed	p.L1759F	0.712	225	0%	245	41.6%	4	0%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
ENSG00000235812	0	genome.wustl.edu	37	14	70713518	70713518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000433248	-1	known	p.R117H	0.031	68	0%	103	34%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ANGEL1	23357	genome.wustl.edu	37	14	77272984	77272984	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015305.3	-1	validated	p.P385	0.001	59	0%	57	47.4%	6	16.6%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
TTC7B	145567	genome.wustl.edu	37	14	91059966	91059966	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001010854.1	-1	provisional	p.S657	0.002	49	0%	75	34.7%	11	18.1%	-	-	-	superfamily_TPR-like
SERPINA1	5265	genome.wustl.edu	37	14	94849219	94849219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000295.4	-1	reviewed	p.G119D	0.971	100	0%	104	35.6%	230	44.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
KIAA0284	283638	genome.wustl.edu	37	14	105349540	105349540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001112726.1	+1	validated	p.T249M	1.000	28	0%	29	44.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC2	8924	genome.wustl.edu	37	15	28370293	28370293	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004667.4	-1	reviewed	p.D4283	1.000	165	0%	205	33.7%	41	31.7%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
ARHGAP11B	89839	genome.wustl.edu	37	15	30926497	30926497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001039841.1	+1	provisional	p.L141P	1.000	414	0%	432	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
FAN1	22909	genome.wustl.edu	37	15	31206105	31206105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014967.4	+1	reviewed	p.P541H	0.999	253	0%	254	32.7%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHRNA7	1139	genome.wustl.edu	37	15	32460294	32460294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000746.3	+1	reviewed	p.G382R	0.998	37	0%	51	11.8%	1	0%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
AQR	9716	genome.wustl.edu	37	15	35166887	35166887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014691.2	-1	validated	p.A1139V	1.000	195	0%	201	30.8%	12	16.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF52540
DISP2	85455	genome.wustl.edu	37	15	40661057	40661057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_033510.1	+1	reviewed	p.P915Q	0.991	26	0%	40	25%	0	-	benign(0.175)	tolerated(0.28)	neutral(0.048)	NULL
DLL4	54567	genome.wustl.edu	37	15	41228833	41228833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_019074.2	+1	reviewed	p.V550M	0.831	39	0%	36	38.9%	11	0%	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
INO80	54617	genome.wustl.edu	37	15	41272614	41272614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017553.1	-1	reviewed	p.Q1493R	1.000	82	0%	122	41.8%	8	37.5%	benign(0.068)	tolerated(0.62)	neutral(0.009)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43712845	43712845	+	Nonsense_Mutation	SNP	G	G	A	rs67086944		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001141980.1	-1	validated	p.R1447*	0.999	62	0%	53	39.6%	25	12%	-	-	-	NULL
DUOXA1	90527	genome.wustl.edu	37	15	45411449	45411449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144565.2	-1	provisional	p.S296N	0.001	48	0%	58	32.8%	1	0%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
DUOX1	53905	genome.wustl.edu	37	15	45444531	45444531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017434.3	+1	reviewed	p.V1081M	1.000	108	0%	148	37.2%	5	40%	possibly_damaging(0.903)	tolerated(0.06)	deleterious(0.680)	NULL
SLTM	79811	genome.wustl.edu	37	15	59185115	59185115	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024755.2	-1	validated	p.R627*	0.980	393	0%	440	28.9%	2	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62147125	62147125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020821.1	-1	validated	p.S3702N	0.923	180	0%	182	28.6%	8	37.5%	benign(0.052)	deleterious(0.03)	neutral(0.367)	NULL
SMAD3	4088	genome.wustl.edu	37	15	67477184	67477184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005902.3	+1	reviewed	p.V331I	1.000	77	0%	87	28.7%	8	12.5%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
TLE3	7090	genome.wustl.edu	37	15	70344792	70344792	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005078.2	-1	validated	p.V685	0.999	29	0%	31	12.9%	129	44.1%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
NEIL1	79661	genome.wustl.edu	37	15	75641440	75641440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024608.2	+1	validated	p.G65V	0.984	11	0%	28	28.6%	16	68.7%	possibly_damaging(0.645)	tolerated(0.06)	deleterious(0.548)	HMMPfam_Fapy_DNA_glyco,superfamily_N-terminal domain of MutM-like DNA repair proteins
UBE2Q2	92912	genome.wustl.edu	37	15	76183289	76183289	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173469.2	+1	validated	p.S321	0.261	268	0.4%	279	32.3%	20	15%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
MTHFS	10588	genome.wustl.edu	37	15	80137573	80137573	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006441.2	-1	validated	p.Y197	0.000	160	0%	230	30.9%	49	48.9%	-	-	-	HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950
MESDC2	23184	genome.wustl.edu	37	15	81282061	81282062	+	In_Frame_Ins	INS	-	-	AGC	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015154.1	-1	validated	p.27in_frame_insL	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90127735	90127735	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152259.3	+1	validated	p.L385	0.700	54	0%	83	26.5%	0	-	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90342540	90342540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001150.2	-1	reviewed	p.P654T	1.000	221	0%	214	33.2%	161	48.4%	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	NULL
CRTC3	64784	genome.wustl.edu	37	15	91185367	91185367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022769.3	+1	validated	p.L619	1.000	47	0%	76	32.9%	7	42.8%	-	-	-	NULL
FES	2242	genome.wustl.edu	37	15	91434851	91434851	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002005.3	+1	reviewed	p.Q534fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
RAB11FIP3	9727	genome.wustl.edu	37	16	570528	570528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014700.3	+1	validated	p.A696T	1.000	76	0%	120	37.5%	139	37.4%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
RAB40C	57799	genome.wustl.edu	37	16	675935	675935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021168.4	+1	validated	p.R127W	1.000	37	0%	39	33.3%	47	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RHOT2	89941	genome.wustl.edu	37	16	722747	722747	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_138769.1	+1	provisional	p.D483	0.049	90	0%	91	41.8%	446	40.1%	-	-	-	HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
NTHL1	4913	genome.wustl.edu	37	16	2096259	2096259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002528.5	-1	reviewed	p.K83R	0.000	60	0%	63	44.4%	32	40.6%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
CASKIN1	57524	genome.wustl.edu	37	16	2237257	2237257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020764.3	-1	validated	p.V249M	0.993	145	0%	168	32.7%	4	25%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
RNPS1	10921	genome.wustl.edu	37	16	2314313	2314313	+	Missense_Mutation	SNP	G	G	A	rs140623716	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006711.2	-1	reviewed	p.R31C	1.000	300	0%	348	23.9%	31	22.5%	unknown(0)	tolerated(0.13)	-	NULL
IL32	9235	genome.wustl.edu	37	16	3117467	3117467	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000416912	+1	known	p.A35	0.000	99	0%	139	28.8%	27	7.4%	-	-	-	NULL
SLX4	84464	genome.wustl.edu	37	16	3652147	3652147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032444.2	-1	provisional	p.V308M	0.002	97	0%	97	26.8%	0	-	probably_damaging(0.981)	tolerated(0.09)	deleterious(0.722)	NULL
LOC342346	342346	genome.wustl.edu	37	16	4650103	4650103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145011.1	+1	predicted	p.L1071M	0.417	46	0%	44	38.6%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ZNF500	26048	genome.wustl.edu	37	16	4812715	4812715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021646.1	-1	validated	p.G153W	0.006	94	0%	112	33.9%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7383059	7383059	+	Silent	SNP	G	G	A	rs147261087	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145891.2	+1	reviewed	p.P19	0.001	196	0.5%	214	30.4%	0	-	-	-	-	NULL
TMEM186	25880	genome.wustl.edu	37	16	8890134	8890134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015421.3	-1	validated	p.M106T	0.000	139	0%	155	34.2%	19	36.8%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9862766	9862766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000833.3	-1	reviewed	p.R846H	1.000	67	0%	72	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	10274088	10274088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000833.3	-1	reviewed	p.A61T	0.000	29	0%	29	24.1%	0	-	benign(0.042)	tolerated(0.76)	neutral(0.004)	superfamily_Periplasmic binding protein-like I
PRM2	5620	genome.wustl.edu	37	16	11370141	11370141	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002762.2	-1	validated	p.H29	0.001	56	0%	96	35.4%	0	-	-	-	-	HMMPfam_Protamine_P2
LITAF	9516	genome.wustl.edu	37	16	11643479	11643479	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000381810	-1	known	p.T167	0.000	30	0%	32	25%	31	19.3%	-	-	-	NULL
EEF2K	29904	genome.wustl.edu	37	16	22237179	22237179	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013302.3	+1	reviewed	p.T43	0.002	85	0%	81	29.6%	9	66.6%	-	-	-	NULL
ATXN2L	11273	genome.wustl.edu	37	16	28846626	28846626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_148414.1	+1	reviewed	p.H864R	1.000	146	0%	138	23.2%	378	38%	benign(0.074)	tolerated(0.41)	neutral(0.020)	NULL
QPRT	23475	genome.wustl.edu	37	16	29706326	29706326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014298.3	+1	reviewed	p.A119T	0.007	21	0%	22	54.5%	16	6.2%	benign(0.062)	tolerated(0.36)	neutral(0.024)	HMMPfam_QRPTase_C,superfamily_Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase NadC) C-terminal domain
YPEL3	83719	genome.wustl.edu	37	16	30106212	30106212	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_031477.4	-1	validated	p.N94	0.998	37	0%	42	38.1%	174	29.8%	-	-	-	HMMPfam_Yippee
CD2BP2	10421	genome.wustl.edu	37	16	30364277	30364277	+	RNA	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NR_024465.1	-1	reviewed	NULL	0.061	26	0%	15	53.3%	42	30.9%	-	-	-	-
ITGAL	3683	genome.wustl.edu	37	16	30485612	30485612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002209.2	+1	reviewed	p.G53R	0.998	13	0%	22	27.3%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
PHKG2	5261	genome.wustl.edu	37	16	30768183	30768183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000294.2	+1	reviewed	p.R329Q	1.000	45	0%	47	40.4%	99	21.2%	possibly_damaging(0.477)	tolerated(0.19)	neutral(0.207)	NULL
ITGAM	3684	genome.wustl.edu	37	16	31332891	31332891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000632.3	+1	reviewed	p.G649R	0.975	317	0%	363	33.6%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
SHCBP1	79801	genome.wustl.edu	37	16	46615957	46615957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024745.4	-1	validated	p.A568V	0.001	189	0%	208	34.1%	0	-	benign(0.05)	tolerated(0.2)	neutral(0.052)	NULL
ABCC11	85320	genome.wustl.edu	37	16	48265751	48265751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032583.3	-1	reviewed	p.V28F	1.000	221	0%	220	30%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IRX6	79190	genome.wustl.edu	37	16	55363166	55363166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024335.2	+1	validated	p.P426S	0.691	11	0%	27	22.2%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
CES1	1066	genome.wustl.edu	37	16	55854338	55854338	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001025195.1	-1	reviewed	p.G249	0.008	132	0%	121	23.1%	2	50%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
CIAPIN1	57019	genome.wustl.edu	37	16	57474720	57474720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020313.2	-1	validated	p.R41C	0.830	120	0%	116	37.9%	7	28.5%	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	HMMPfam_DUF689
SLC9A5	6553	genome.wustl.edu	37	16	67292286	67292286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004594.2	+1	validated	p.R521Q	1.000	72	0%	83	30.1%	0	-	benign(0.315)	tolerated(0.2)	neutral(0.148)	NULL
ZDHHC1	29800	genome.wustl.edu	37	16	67432530	67432530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013304.2	-1	validated	p.G254C	1.000	48	0%	47	40.4%	86	51.1%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
RLTPR	146206	genome.wustl.edu	37	16	67681613	67681613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001013838.1	+1	provisional	p.R301H	0.000	31	0%	37	35.1%	5	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00368,superfamily_RNI-like
AARS	16	genome.wustl.edu	37	16	70296392	70296392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001605.2	-1	reviewed	p.R510C	1.000	146	0%	162	33.3%	67	28.3%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_tRNA-synt_2c
DDX19B	11269	genome.wustl.edu	37	16	70363362	70363362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007242.4	+1	reviewed	p.R259C	1.000	148	0%	161	32.9%	24	20.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
AP1G1	164	genome.wustl.edu	37	16	71790016	71790016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001030007.1	-1	reviewed	p.R382*	1.000	169	0%	176	31.2%	2	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
MLKL	197259	genome.wustl.edu	37	16	74726293	74726293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152649.2	-1	validated	p.S161L	0.000	312	0%	327	32.4%	3	0%	benign(0.005)	tolerated(1)	-	NULL
ADAMTS18	170692	genome.wustl.edu	37	16	77359872	77359872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000378632	-1	known	p.T19I	0.952	189	0%	230	30.4%	0	-	-	-	-	NULL
USP10	9100	genome.wustl.edu	37	16	84778335	84778335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005153.2	+1	reviewed	p.L83P	1.000	201	0%	226	27.9%	3	66.6%	-	-	-	HMMPfam_PAM2
SLC7A5	8140	genome.wustl.edu	37	16	87868104	87868104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003486.5	-1	validated	p.F462L	1.000	59	0%	71	28.2%	13	15.3%	possibly_damaging(0.452)	tolerated(0.55)	neutral(0.155)	HMMPfam_AA_permease
ZC3H18	124245	genome.wustl.edu	37	16	88643849	88643849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_144604.3	+1	validated	p.E106D	0.973	62	0%	74	35.1%	21	33.3%	unknown(0)	tolerated(0.14)	-	NULL
GAS8	2622	genome.wustl.edu	37	16	90097747	90097747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001481.2	+1	reviewed	p.R44H	1.000	86	0%	132	28.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR81	124997	genome.wustl.edu	37	17	1630974	1630974	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000409644	+1	known	p.Q907	1.000	28	0%	51	45.1%	8	12.5%	-	-	-	superfamily_WD40 repeat-like
RPA1	6117	genome.wustl.edu	37	17	1783946	1783946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002945.3	+1	validated	p.A401V	0.990	158	0%	181	24.3%	30	46.6%	benign(0)	tolerated(1)	-	superfamily_Nucleic acid-binding proteins
OR1E1	8387	genome.wustl.edu	37	17	3301076	3301076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003553.2	-1	validated	p.P210Q	0.147	130	0%	162	27.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
TRPV1	7442	genome.wustl.edu	37	17	3494357	3494357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018727.5	-1	reviewed	p.G169R	1.000	189	0%	228	34.6%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00248,superfamily_Ankyrin repeat
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001114974.1	+1	validated	e3+1	0.999	26	0%	24	20.8%	0	-	-	-	-	-
LOC100288822	100288822	genome.wustl.edu	37	17	4692590	4692590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002343474.1	-1	model	p.A328V	0.010	12	0%	14	50%	0	-	-	-	-	NULL
PFN1	5216	genome.wustl.edu	37	17	4849935	4849935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005022.2	-1	reviewed	p.K105E	1.000	52	0%	58	34.5%	3667	34.7%	benign(0.125)	deleterious(0.03)	neutral(0.375)	HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein)
TEKT1	83659	genome.wustl.edu	37	17	6716191	6716191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_053285.1	-1	reviewed	p.T271A	1.000	128	0%	166	30.7%	18	77.7%	possibly_damaging(0.697)	tolerated(0.29)	neutral(0.279)	HMMPfam_Tektin
BCL6B	255877	genome.wustl.edu	37	17	6927466	6927466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_181844.3	+1	validated	p.G82R	0.561	34	0%	45	44.4%	0	-	benign(0.035)	tolerated(0.6)	neutral(0.006)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
NLGN2	57555	genome.wustl.edu	37	17	7315515	7315515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020795.2	+1	reviewed	p.P166L	1.000	73	0%	95	31.6%	3	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_COesterase,superfamily_SSF53474
MYH10	4628	genome.wustl.edu	37	17	8416962	8416962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005964.1	-1	validated	p.R849H	1.000	232	0%	232	34.1%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CDRT15P2	644694	genome.wustl.edu	37	17	15668122	15668122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_932309.3	+1	model	p.T11M	0.000	50	0%	52	21.2%	0	-	-	-	-	NULL
KSR1	8844	genome.wustl.edu	37	17	25909717	25909717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014238.1	+1	validated	p.R52Q	1.000	39	0%	48	22.9%	1	0%	probably_damaging(1)	tolerated(0.54)	deleterious(0.507)	NULL
CCT6B	10693	genome.wustl.edu	37	17	33257984	33257984	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006584.2	-1	reviewed	p.G478	1.000	297	0%	332	28.6%	2	50%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
DUSP14	11072	genome.wustl.edu	37	17	35872619	35872619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007026.2	+1	validated	p.P82L	1.000	87	0%	105	30.5%	117	44.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MED24	9862	genome.wustl.edu	37	17	38178230	38178230	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000422942	-1	known	p.C122R	0.132	62	0%	86	41.9%	1033	48.8%	-	-	-	NULL
KRT16	3868	genome.wustl.edu	37	17	39768884	39768884	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005557.3	-1	reviewed	p.G19	0.008	38	0%	30	26.7%	2	0%	-	-	-	NULL
KCNH4	23415	genome.wustl.edu	37	17	40328112	40328112	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012285.2	-1	reviewed	p.T263	0.955	44	0%	41	24.4%	1	100%	-	-	-	superfamily_SSF81324
CNTNAP1	8506	genome.wustl.edu	37	17	40837315	40837315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003632.2	+1	reviewed	p.V198M	0.916	48	0%	64	34.4%	6	16.6%	benign(0.256)	tolerated(0.06)	neutral(0.349)	HMMSmart_LamG,superfamily_ConA_like_lec_gl
IFI35	3430	genome.wustl.edu	37	17	41158986	41158986	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005533.3	+1	validated	e1+1	0.928	281	0%	313	31.3%	0	-	-	-	-	-
ADAM11	4185	genome.wustl.edu	37	17	42849672	42849672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002390.4	+1	reviewed	p.L194P	1.000	119	0%	123	31.7%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	NULL
GFAP	2670	genome.wustl.edu	37	17	42988020	42988020	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002055.3	-1	reviewed	p.T378	1.000	96	0%	130	28.5%	0	-	-	-	-	NULL
CDK5RAP3	80279	genome.wustl.edu	37	17	46052656	46052656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_176096.1	+1	reviewed	p.E156*	0.997	54	0%	58	25.9%	112	19.6%	-	-	-	HMMPfam_DUF773
CDK5RAP3	80279	genome.wustl.edu	37	17	46058836	46058836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_176096.1	+1	reviewed	p.R497C	1.000	145	0%	120	34.2%	103	25.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF773
ABI3	51225	genome.wustl.edu	37	17	47295191	47295191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016428.2	+1	reviewed	p.A126T	0.994	144	0%	149	22.8%	31	0%	benign(0.073)	deleterious(0.02)	neutral(0.388)	HMMPfam_Abi_HHR
CACNA1G	8913	genome.wustl.edu	37	17	48684268	48684268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018896.3	+1	validated	p.M1477T	1.000	278	0%	323	34.4%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
UTP18	51096	genome.wustl.edu	37	17	49362606	49362606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016001.2	+1	validated	p.G402E	0.512	432	0%	461	25.6%	11	54.5%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1
LOC100288781	100288781	genome.wustl.edu	37	17	55027331	55027331	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002343572.1	+1	model	e2-1	0.000	158	0%	143	35.7%	12	75%	-	-	-	-
RPS6KB1	6198	genome.wustl.edu	37	17	58024038	58024038	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003161.2	+1	reviewed	p.S489	0.996	90	1.1%	99	30.3%	11	36.3%	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60024339	60024339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005121.2	-1	reviewed	p.E2111K	1.000	323	0%	308	33.4%	22	18.1%	benign(0.076)	deleterious(0.02)	neutral(0.389)	NULL
MED13	9969	genome.wustl.edu	37	17	60060273	60060273	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005121.2	-1	reviewed	p.Q1031*	1.000	126	0.8%	149	28.2%	6	16.6%	-	-	-	NULL
KCNH6	81033	genome.wustl.edu	37	17	61607463	61607463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_030779.2	+1	reviewed	p.R107C	1.000	59	0%	85	25.9%	0	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)
KCNH6	81033	genome.wustl.edu	37	17	61613163	61613163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_030779.2	+1	reviewed	p.A412V	1.000	83	0%	70	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DCAF7	10238	genome.wustl.edu	37	17	61662638	61662638	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000310827	+1	known	p.C268	1.000	116	0%	188	32.4%	129	44.9%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BPTF	2186	genome.wustl.edu	37	17	65971951	65971951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_182641.3	+1	reviewed	p.A2868V	1.000	225	0%	246	31.7%	9	22.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
GPR142	350383	genome.wustl.edu	37	17	72368332	72368332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_181790.1	+1	provisional	p.V328M	0.980	134	0%	163	30.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_SSF81321
MGAT5B	146664	genome.wustl.edu	37	17	74944044	74944044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198955.1	+1	validated	p.A695T	0.000	23	0%	17	35.3%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76083092	76083092	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001142640.1	+1	validated	p.S1237	0.008	109	0%	101	35.6%	13	0%	-	-	-	NULL
CYTH1	9267	genome.wustl.edu	37	17	76698247	76698247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004762.2	-1	reviewed	p.E105K	1.000	251	0%	285	31.9%	1	100%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
RNF213	57674	genome.wustl.edu	37	17	78291023	78291023	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020954.2	+1	validated	p.A949	0.000	234	0%	243	34.6%	3	33.3%	-	-	-	NULL
DUS1L	64118	genome.wustl.edu	37	17	80019146	80019146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022156.3	-1	validated	p.R261W	0.402	19	0%	19	26.3%	418	38.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Dus,superfamily_SSF51395
TEX19	400629	genome.wustl.edu	37	17	80320320	80320320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_207459.2	+1	provisional	p.W98C	0.042	31	0%	45	42.2%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
NARF	26502	genome.wustl.edu	37	17	80439066	80439066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012336.3	+1	reviewed	p.A250T	0.835	69	0%	82	34.1%	51	33.3%	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase
LAMA1	284217	genome.wustl.edu	37	18	7026084	7026084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005559.2	-1	validated	p.G766S	0.999	31	0%	52	36.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
ENSG00000153081	0	genome.wustl.edu	37	18	11619876	11619876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000283050	-1	known	p.P229S	0.004	23	0%	19	31.6%	13	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_NPIP
ANKRD30B	374860	genome.wustl.edu	37	18	14779995	14779995	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145029.1	+1	validated	p.D486V	0.000	462	0%	413	22.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
FAM59A	64762	genome.wustl.edu	37	18	29867752	29867752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022751.1	-1	provisional	p.R270C	1.000	282	0%	321	11.2%	3	0%	possibly_damaging(0.913)	tolerated(0.13)	deleterious(0.617)	NULL
GALNT1	2589	genome.wustl.edu	37	18	33283506	33283506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020474.3	+1	reviewed	p.T478A	1.000	273	0%	274	22.6%	11	9%	benign(0.008)	tolerated(0.54)	neutral(0.007)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MYO5B	4645	genome.wustl.edu	37	18	47500789	47500789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080467.2	-1	reviewed	p.E418G	1.000	180	0%	215	14.9%	10	0%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NEDD4L	23327	genome.wustl.edu	37	18	56063419	56063419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001144967.1	+1	validated	p.P949H	1.000	408	0%	441	35.8%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
POLRMT	5442	genome.wustl.edu	37	19	618504	618504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005035.3	-1	reviewed	p.A1136T	0.988	189	0%	189	31.7%	357	32.4%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMPfam_RNA_pol,superfamily_SSF56672
CIRBP	1153	genome.wustl.edu	37	19	1272297	1272297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000413636	+1	known	p.R216K	0.000	108	0%	114	31.6%	39	35.8%	unknown(0)	deleterious(0)	-	NULL
AP3D1	8943	genome.wustl.edu	37	19	2114139	2114141	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003938.5	-1	validated	p.K862in_frame_del	0.995:0.997:0.987	-	-	-	-	-	-	-	-	-	HMMPfam_BLVR
AP3D1	8943	genome.wustl.edu	37	19	2132541	2132541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003938.5	-1	validated	p.A131T	1.000	90	0%	118	30.5%	97	37.1%	possibly_damaging(0.873)	tolerated(1)	neutral(0.339)	HMMPfam_Adaptin_N,superfamily_ARM repeat
EEF2	1938	genome.wustl.edu	37	19	3982933	3982933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001961.3	-1	reviewed	p.R162C	1.000	25	0%	32	21.9%	2624	37.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
UHRF1	29128	genome.wustl.edu	37	19	4960752	4960752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000398240	+1	known	p.V786M	1.000	68	0%	96	22.9%	87	48.2%	possibly_damaging(0.908)	deleterious(0.01)	deleterious(0.767)	superfamily_RING/U-box
KDM4B	23030	genome.wustl.edu	37	19	5144088	5144088	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015015.2	+1	validated	p.G887	0.468	25	0%	29	31%	91	42.8%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
LONP1	9361	genome.wustl.edu	37	19	5700908	5700908	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004793.2	-1	reviewed	p.T466	0.264	94	0%	119	29.4%	237	23.6%	-	-	-	NULL
GTF2F1	2962	genome.wustl.edu	37	19	6381574	6381576	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002096.2	-1	validated	p.E296in_frame_del	0.998:0.982:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_TFIIF_alpha
CAMSAP3	57662	genome.wustl.edu	37	19	7673107	7673107	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080429.2	+1	validated	p.A266	0.336	22	0%	39	38.5%	50	54%	-	-	-	superfamily_Calponin-homology domain CH-domain
CAMSAP3	57662	genome.wustl.edu	37	19	7677810	7677810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080429.2	+1	validated	p.R838C	1.000	12	0%	27	22.2%	20	35%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
STXBP2	6813	genome.wustl.edu	37	19	7703904	7703904	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006949.2	+1	reviewed	e3-1	1.000	82	0%	85	34.1%	15	100%	-	-	-	-
LRRC8E	80131	genome.wustl.edu	37	19	7963733	7963733	+	Missense_Mutation	SNP	C	C	T	rs147444920	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_025061.3	+1	validated	p.T109M	0.901	145	0%	160	32.5%	4	75%	probably_damaging(0.98)	tolerated(0.08)	deleterious(0.724)	NULL
TIMM44	10469	genome.wustl.edu	37	19	7998859	7998859	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006351.3	-1	validated	p.D191	0.154	83	0%	109	22%	14	14.2%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	8987333	8987333	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024690.2	-1	validated	p.T13918	0.001	158	0%	173	31.2%	14	21.4%	-	-	-	superfamily_SEA domain
EIF3G	8666	genome.wustl.edu	37	19	10229297	10229297	+	Missense_Mutation	SNP	C	C	T	rs11667630	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000453552	-1	known	p.R116H	0.007	47	0%	46	26.1%	0	-	-	-	-	NULL
DNM2	1785	genome.wustl.edu	37	19	10908170	10908170	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001005361.1	+1	reviewed	p.T437	0.262	128	0%	146	30.8%	4	25%	-	-	-	HMMPfam_Dynamin_M
CNN1	1264	genome.wustl.edu	37	19	11658639	11658639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001299.4	+1	validated	p.V140L	0.921	189	0.5%	247	30.4%	12	0%	benign(0)	tolerated(0.46)	neutral(0.012)	superfamily_Calponin-homology domain CH-domain
ZNF443	10224	genome.wustl.edu	37	19	12540989	12540989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005815.4	-1	validated	p.R666K	0.000	333	0%	359	28.4%	1	0%	benign(0.025)	tolerated(0.85)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576282	12576282	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152601.3	-1	validated	p.R152*	0.000	159	0%	162	38.3%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR83	84292	genome.wustl.edu	37	19	12781594	12781594	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001099737.2	+1	reviewed	p.G155	0.007	70	0%	87	35.6%	80	38.7%	unknown(0)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HOOK2	29911	genome.wustl.edu	37	19	12883472	12883472	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_013312.2	-1	validated	p.T137	0.274	184	0%	212	32.5%	25	20%	-	-	-	HMMPfam_HOOK
STX10	8677	genome.wustl.edu	37	19	13255589	13255589	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003765.1	-1	provisional	p.D189	0.902	48	0%	59	32.2%	312	33.6%	-	-	-	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN
LPHN1	22859	genome.wustl.edu	37	19	14266187	14266187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001008701.2	-1	reviewed	p.C1098Y	1.000	93	0%	92	25%	28	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2
PGLYRP2	114770	genome.wustl.edu	37	19	15586620	15586620	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052890.3	-1	validated	p.S287	0.032	26	0%	23	30.4%	0	-	-	-	-	NULL
SLC35E1	79939	genome.wustl.edu	37	19	16666010	16666010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024881.4	-1	validated	p.V319I	1.000	107	0%	85	31.8%	30	23.3%	benign(0.056)	tolerated(0.36)	neutral(0.024)	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
MYO9B	4650	genome.wustl.edu	37	19	17321648	17321650	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004145.3	+1	reviewed	p.E1976in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18367961	18367961	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000358422	-1	known	p.S546	0.000	55	0%	71	29.6%	2	0%	-	-	-	NULL
TMEM59L	25789	genome.wustl.edu	37	19	18724781	18724781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012109.2	+1	reviewed	p.A91T	1.000	23	0%	30	26.7%	1	0%	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	NULL
SUGP1	57794	genome.wustl.edu	37	19	19407961	19407961	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_172231.2	-1	validated	p.A360	0.002	83	0%	91	29.7%	54	29.6%	-	-	-	NULL
TSSK6	83983	genome.wustl.edu	37	19	19625770	19625770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032037.2	-1	validated	p.G156D	1.000	16	0%	12	33.3%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000213985	0	genome.wustl.edu	37	19	20370070	20370070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000397155	+1	known	p.C344Y	1.000	179	0.6%	169	21.9%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ANKRD27	84079	genome.wustl.edu	37	19	33089123	33089123	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032139.2	-1	validated	p.A1027	0.000	47	0%	47	17%	39	10.2%	-	-	-	NULL
ANKRD27	84079	genome.wustl.edu	37	19	33090883	33090883	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032139.2	-1	validated	p.Q947	0.087	262	0%	249	32.1%	7	14.2%	-	-	-	NULL
RHPN2	85415	genome.wustl.edu	37	19	33502680	33502680	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_033103.4	-1	reviewed	p.A166	0.717	44	0%	39	30.8%	19	73.6%	-	-	-	HMMPfam_BRO1
PEPD	5184	genome.wustl.edu	37	19	34003550	34003550	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000285.3	-1	reviewed	p.G50	0.351	21	0%	26	50%	53	33.9%	-	-	-	HMMPfam_AMP_N,superfamily_SSF53092
GPI	2821	genome.wustl.edu	37	19	34884861	34884861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000175.3	+1	reviewed	p.V318I	0.575	93	0%	118	33.9%	435	39.7%	benign(0.186)	tolerated(0.12)	neutral(0.278)	HMMPfam_PGI,superfamily_SSF53697
MLL4	9757	genome.wustl.edu	37	19	36211495	36211495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014727.1	+1	reviewed	p.P416T	0.377	34	0%	31	29%	3	66.6%	unknown(0)	deleterious(0.04)	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36224533	36224533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014727.1	+1	reviewed	p.R2332H	1.000	68	0%	64	23.4%	7	42.8%	probably_damaging(0.997)	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36564262	36564262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001083961.1	+1	validated	p.K354N	0.948	76	0%	92	22.8%	9	55.5%	benign(0.156)	tolerated(0.49)	neutral(0.025)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ZNF585A	199704	genome.wustl.edu	37	19	37644343	37644343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152655.2	-1	validated	p.A98V	0.998	309	0%	334	28.4%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	superfamily_C2H2 and C2HC zinc fingers
DPF1	8193	genome.wustl.edu	37	19	38713195	38713195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000418517	-1	known	p.R61W	0.971	33	0%	19	26.3%	2	0%	unknown(0)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39038896	39038896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000540.2	+1	reviewed	p.A4040T	1.000	81	0%	99	26.3%	0	-	probably_damaging(0.972)	-	-	NULL
DLL3	10683	genome.wustl.edu	37	19	39994719	39994719	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_016941.3	+1	reviewed	p.R221*	0.456	80	0%	95	33.7%	0	-	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2
LGALS14	56891	genome.wustl.edu	37	19	40199934	40199934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_203471.1	+1	reviewed	p.R163K	0.000	116	0%	156	42.9%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
ENSG00000198251	0	genome.wustl.edu	37	19	41415186	41415186	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000412510	-1	known	p.G141fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
AXL	558	genome.wustl.edu	37	19	41765473	41765473	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021913.3	+1	reviewed	p.S783	0.998	92	0%	110	30%	14	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MEGF8	1954	genome.wustl.edu	37	19	42860267	42860267	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001410.2	+1	validated	p.F1408	0.993	49	0%	48	10.4%	3	0%	-	-	-	PatternScan_EGF_1,PatternScan_EGF_2
ENSG00000204933	0	genome.wustl.edu	37	19	43883230	43883230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000378007	-1	known	p.C16Y	0.023	86	0%	98	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPAR_LY6
DMWD	1762	genome.wustl.edu	37	19	46289902	46289902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004943.1	-1	validated	p.E284D	1.000	32	0%	27	22.2%	22	36.3%	possibly_damaging(0.945)	tolerated(0.14)	deleterious(0.639)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
FAM83E	54854	genome.wustl.edu	37	19	49104603	49104603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017708.3	-1	validated	p.K400N	0.999	27	0%	46	34.8%	7	42.8%	benign(0.076)	deleterious(0)	neutral(0.450)	NULL
SPHK2	56848	genome.wustl.edu	37	19	49131491	49131491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020126.3	+1	provisional	p.G277S	1.000	26	0%	21	47.6%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_cat,HMMSmart_SM00046
ALDH16A1	126133	genome.wustl.edu	37	19	49965857	49965857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_153329.3	+1	reviewed	p.V315M	0.920	58	0%	69	27.5%	27	18.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Aldedh,superfamily_ALDH-like
AP2A1	160	genome.wustl.edu	37	19	50295285	50295285	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014203.2	+1	reviewed	p.T189	0.841	52	0%	63	23.8%	192	23.9%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
MYH14	79784	genome.wustl.edu	37	19	50735192	50735192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001077186.1	+1	reviewed	p.L327I	1.000	35	0%	49	36.7%	21	47.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPIB	6689	genome.wustl.edu	37	19	50922242	50922245	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	AGTA	AGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003121.3	+1	validated	p.Q8fs	1.000	-	-	-	-	-	-	-	-	-	NULL
KLK10	5655	genome.wustl.edu	37	19	51518066	51518066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001077500.1	-1	reviewed	p.R274H	0.000	155	0%	167	29.3%	74	51.3%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	superfamily_Trypsin-like serine proteases
CEACAM18	729767	genome.wustl.edu	37	19	51983669	51983669	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001080405.1	+1	provisional	p.T106	0.000	171	0%	193	34.2%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52002913	52002913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_053003.2	-1	reviewed	p.R289M	0.000	65	0%	74	35.1%	2	0%	possibly_damaging(0.81)	tolerated(0.11)	deleterious(0.577)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
ZNF534	147658	genome.wustl.edu	37	19	52941929	52941929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001143939.1	+1	validated	p.G419W	0.996	189	0%	191	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
LOC388559	388559	genome.wustl.edu	37	19	53409477	53409477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_496322.5	-1	model	p.R682C	0.000	121	0%	124	32.3%	15	26.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NDUFA3	4696	genome.wustl.edu	37	19	54609272	54609272	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000391763	+1	known	p.Q43*	0.971	216	0%	206	31.6%	526	22.2%	-	-	-	NULL
LILRA1	11024	genome.wustl.edu	37	19	55106133	55106133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006863.1	+1	provisional	p.T25I	0.715	91	0%	105	40%	0	-	benign(0.009)	tolerated(0.16)	neutral(0.060)	superfamily_Immunoglobulin
TNNI3	7137	genome.wustl.edu	37	19	55663279	55663279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000363.4	-1	reviewed	p.R186W	0.989	262	0%	330	32.1%	8	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BRSK1	84446	genome.wustl.edu	37	19	55798615	55798615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032430.1	+1	validated	p.E89K	1.000	116	0%	116	29.3%	2	0%	possibly_damaging(0.76)	deleterious(0.03)	deleterious(0.645)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C20orf194	25943	genome.wustl.edu	37	20	3268422	3268422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001009984.1	-1	validated	p.R781H	1.000	92	2.2%	96	32.3%	3	66.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SMOX	54498	genome.wustl.edu	37	20	4164147	4164147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_175839.1	+1	reviewed	p.P459H	1.000	99	0%	100	29%	22	18.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
BMP2	650	genome.wustl.edu	37	20	6750887	6750887	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001200.2	+1	reviewed	p.S38	0.974	18	0%	24	37.5%	2	0%	-	-	-	HMMPfam_TGFb_propeptide
PLCB4	5332	genome.wustl.edu	37	20	9351882	9351882	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000933.3	+1	reviewed	p.S175	0.996	264	0%	262	28.6%	2	100%	-	-	-	superfamily_SSF47473
DZANK1	55184	genome.wustl.edu	37	20	18424088	18424088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001099407.1	-1	validated	p.P217L	0.433	57	0%	70	28.6%	2	50%	possibly_damaging(0.7)	tolerated(0.49)	neutral(0.262)	NULL
SOGA1	140710	genome.wustl.edu	37	20	35467693	35467693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_199181.2	-1	validated	p.R42H	1.000	23	0%	36	36.1%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TTI1	9675	genome.wustl.edu	37	20	36641525	36641525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014657.1	-1	predicted	p.V232I	0.087	201	0%	254	31.5%	3	0%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_ARM-type_fold
PLCG1	5335	genome.wustl.edu	37	20	39800903	39800903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002660.2	+1	reviewed	p.C960Y	1.000	94	0%	123	32.5%	51	29.4%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
PTPRT	11122	genome.wustl.edu	37	20	40735540	40735540	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000454126	-1	known	p.A730D	1.000	120	0%	170	33.5%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
SRSF6	6431	genome.wustl.edu	37	20	42088473	42088473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006275.5	+1	reviewed	p.R107C	1.000	297	0%	314	26.1%	109	36.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_RNA-binding domain RBD
R3HDML	140902	genome.wustl.edu	37	20	42966035	42966035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_178491.2	+1	provisional	p.P80S	1.000	33	0%	40	12.5%	1	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
NCOA5	57727	genome.wustl.edu	37	20	44698944	44698945	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020967.2	-1	reviewed	p.F90fs	0.925:0.993	-	-	-	-	-	-	-	-	-	NULL
BMP7	655	genome.wustl.edu	37	20	55758829	55758829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001719.2	-1	reviewed	p.R303C	0.998	70	0%	77	35.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDH26	60437	genome.wustl.edu	37	20	58562536	58562536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_177980.2	+1	reviewed	p.A289V	0.000	120	0%	147	39.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin
SLCO4A1	28231	genome.wustl.edu	37	20	61299214	61299214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000451793	+1	known	p.A17V	1.000	81	0%	95	46.3%	5	0%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
EEF1A2	1917	genome.wustl.edu	37	20	62121913	62121913	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001958.2	-1	reviewed	p.S316	0.002	29	0%	19	42.1%	1	0%	-	-	-	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins
UCKL1	54963	genome.wustl.edu	37	20	62575013	62575013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_017859.2	-1	validated	p.S306G	1.000	41	0%	54	25.9%	149	29.5%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
TPTE	7179	genome.wustl.edu	37	21	10934106	10934106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_199261.2	-1	validated	p.D291Y	1.000	554	0%	547	13.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_(Phosphotyrosine protein) phosphatases II
NCAM2	4685	genome.wustl.edu	37	21	22664538	22664538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004540.2	+1	reviewed	p.R199H	1.000	502	0.2%	497	12.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF48726
APP	351	genome.wustl.edu	37	21	27347435	27347435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000484.3	-1	reviewed	p.R469H	1.000	126	0%	140	22.9%	648	22.3%	unknown(0)	deleterious(0)	-	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
HUNK	30811	genome.wustl.edu	37	21	33297020	33297020	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014586.1	+1	validated	p.R168*	0.750	41	0%	40	20%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GART	2618	genome.wustl.edu	37	21	34876442	34876442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000819.4	-1	reviewed	p.K1008E	0.025	149	0%	193	28%	9	33.3%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SON	6651	genome.wustl.edu	37	21	34932306	34932306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_032195.1	+1	reviewed	p.A2261T	1.000	155	0%	174	33.3%	8	25%	unknown(0)	deleterious(0)	-	NULL
KCNE2	9992	genome.wustl.edu	37	21	35742905	35742905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_172201.1	+1	reviewed	p.A43V	0.519	237	0%	231	30.3%	1	0%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
CLDN14	23562	genome.wustl.edu	37	21	37833544	37833544	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012130.2	-1	reviewed	p.P150	0.061	82	0%	77	36.4%	4	25%	-	-	-	HMMPfam_PMP22_Claudin
DSCAM	1826	genome.wustl.edu	37	21	41423939	41423939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001389.3	-1	validated	p.V1711M	0.998	119	0%	174	31.6%	0	-	benign(0.372)	tolerated(0.11)	neutral(0.390)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41719670	41719670	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001389.3	-1	validated	p.D379	0.999	242	0%	319	32%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TMPRSS2	7113	genome.wustl.edu	37	21	42845268	42845268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005656.3	-1	reviewed	p.A295T	0.991	12	0%	16	31.2%	11	54.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
PRDM15	63977	genome.wustl.edu	37	21	43259892	43259892	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022115.3	-1	validated	p.P603	0.001	154	0%	163	35%	0	-	-	-	-	NULL
LOC100288232	100288232	genome.wustl.edu	37	21	43274676	43274676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	XM_002343752.1	+1	model	p.V128M	0.011	20	0%	26	23.1%	0	-	-	-	-	NULL
ABCG1	9619	genome.wustl.edu	37	21	43704759	43704759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004915.3	+1	reviewed	p.Q275R	1.000	46	0%	49	24.5%	31	51.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCBP3	54039	genome.wustl.edu	37	21	47330865	47330865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020528.2	+1	reviewed	p.T174M	1.000	63	0%	64	12.5%	11	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ENSG00000093100	0	genome.wustl.edu	37	22	18310510	18310510	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000252134	-1	known	p.R13Q	0.090	47	0%	53	30.2%	0	-	-	-	-	NULL
TRMT2A	27037	genome.wustl.edu	37	22	20102109	20102109	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_022727.4	-1	validated	p.H407	0.999	97	0%	86	41.9%	69	34.7%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRR14L	253143	genome.wustl.edu	37	22	32108235	32108235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173566.2	-1	validated	p.R1864W	0.068	95	0%	134	29.1%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFT27	11020	genome.wustl.edu	37	22	37163864	37163864	+	Missense_Mutation	SNP	C	C	T	rs185871181	by1000genomes	TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006860.3	-1	reviewed	p.R25H	1.000	119	0%	158	28.5%	57	10.5%	benign(0.005)	tolerated(0.32)	neutral(0.024)	superfamily_SSF52540
TAB1	10454	genome.wustl.edu	37	22	39817833	39817833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_006116.2	+1	reviewed	p.A260T	0.134	140	0.7%	159	27.7%	36	33.3%	benign(0.005)	tolerated(0.61)	neutral(0.004)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
ATP5L2	267020	genome.wustl.edu	37	22	43036055	43036055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000505920	-1	known	p.N76D	1.000	308	0%	334	14.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_ATP-synt_G
PACSIN2	11252	genome.wustl.edu	37	22	43280514	43280514	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_007229.3	-1	reviewed	p.Q221	1.000	293	0.3%	313	26.8%	19	36.8%	-	-	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46930762	46930762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_014246.1	-1	reviewed	p.R769Q	0.208	40	0%	36	33.3%	46	47.8%	probably_damaging(0.993)	tolerated(0.13)	deleterious(0.703)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TUBGCP6	85378	genome.wustl.edu	37	22	50665268	50665268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020461.3	-1	reviewed	p.V499M	0.999	33	0%	39	33.3%	11	72.7%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Spc97_Spc98
ENSG00000238643	0	genome.wustl.edu	37	GL000229.1	17347	17347	+	RNA	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000459109	+1	novel	NULL	NULL	11	0%	16	31.2%	0	-	-	-	-	-
PLCXD1	55344	genome.wustl.edu	37	X	215988	215988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018390.3	+1	reviewed	p.L320M	0.993	69	0%	91	30.8%	11	63.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PLC-like_Pdiesterase_TIM-brl
CD99	4267	genome.wustl.edu	37	X	2656144	2656144	+	Missense_Mutation	SNP	C	C	T	rs56342225		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	ENST00000381177	+1	known	p.A25V	0.004	349	0%	407	36.4%	0	-	unknown(0)	-	-	NULL
NLGN4X	57502	genome.wustl.edu	37	X	6069211	6069211	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020742.2	-1	reviewed	p.G99	0.010	144	0%	127	40.9%	1	0%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
SHROOM2	357	genome.wustl.edu	37	X	9914789	9914789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001649.2	+1	reviewed	p.R1555C	0.886	79	0%	71	31%	6	83.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ASD2
SCML1	6322	genome.wustl.edu	37	X	17768306	17768306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001037540.1	+1	validated	p.D199G	0.000	145	0%	177	40.7%	5	0%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
EIF2S3	1968	genome.wustl.edu	37	X	24075780	24075780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001415.3	+1	reviewed	p.R98W	1.000	158	0%	158	34.8%	66	4.5%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
GK	2710	genome.wustl.edu	37	X	30726198	30726198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001128127.1	+1	reviewed	p.T302A	0.998	261	0%	333	29.4%	2	0%	possibly_damaging(0.922)	tolerated(0.07)	deleterious(0.691)	HMMPfam_FGGY_C,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30849575	30849575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_152787.3	-1	reviewed	p.C703Y	1.000	257	0%	284	31%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_NZF domain
MAOB	4129	genome.wustl.edu	37	X	43628560	43628560	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000898.4	-1	reviewed	p.A447	1.000	140	0%	203	30%	8	0%	unknown(0)	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
USP11	8237	genome.wustl.edu	37	X	47092478	47092478	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004651.3	+1	reviewed	p.A55	0.003	35	0%	18	27.8%	1	0%	-	-	-	NULL
WAS	7454	genome.wustl.edu	37	X	48542775	48542775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000377.2	+1	reviewed	p.P79L	1.000	127	0.8%	147	31.3%	28	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
MAGIX	79917	genome.wustl.edu	37	X	49021099	49021099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_024859.2	+1	validated	p.H84P	0.031	128	0%	129	25.6%	24	0%	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	NULL
USP27X	389856	genome.wustl.edu	37	X	49645166	49645166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145073.1	+1	provisional	p.T86A	1.000	290	0%	302	31.5%	1	0%	-	-	-	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_SSF54001
WNK3	65267	genome.wustl.edu	37	X	54282287	54282287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_020922.4	-1	reviewed	p.N712	0.094	350	0%	382	25.1%	0	-	-	-	-	superfamily_Kinase_like
ITIH6	347365	genome.wustl.edu	37	X	54776371	54776371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_198510.2	-1	reviewed	p.V1300A	1.000	33	0%	42	40.5%	0	-	possibly_damaging(0.753)	tolerated(0.35)	neutral(0.297)	NULL
FAM155B	27112	genome.wustl.edu	37	X	68725820	68725820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_015686.2	+1	validated	p.V232A	0.939	27	0%	28	32.1%	1	100%	benign(0.052)	tolerated(0.58)	neutral(0.008)	NULL
OTUD6A	139562	genome.wustl.edu	37	X	69283055	69283055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_207320.1	+1	provisional	p.H227	0.138	29	0%	29	41.4%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
KIF4A	24137	genome.wustl.edu	37	X	69607053	69607053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_012310.4	+1	reviewed	p.R713H	1.000	187	0%	200	35%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DLG3	1741	genome.wustl.edu	37	X	69670611	69670611	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_021120.3	+1	reviewed	p.Y321	0.937	102	0%	85	25.9%	0	-	-	-	-	superfamily_PDZ domain-like,HMMPfam_PDZ_assoc
TEX11	56159	genome.wustl.edu	37	X	70099952	70099952	+	Silent	SNP	A	A	G	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001003811.1	-1	reviewed	p.V30	0.002	352	0%	446	24.2%	0	-	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70612490	70612490	+	Silent	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_004606.3	+1	reviewed	p.V971	1.000	204	0%	237	28.3%	3	0%	-	-	-	NULL
ACRC	93953	genome.wustl.edu	37	X	70823556	70823556	+	Silent	SNP	T	T	C	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_052957.4	+1	validated	p.S143	0.000	205	0%	219	34.2%	0	-	-	-	-	NULL
RPS4X	6191	genome.wustl.edu	37	X	71493124	71493124	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001007.4	-1	reviewed	p.N216	1.000	163	0%	168	36.3%	7022	47.1%	-	-	-	NULL
UPRT	139596	genome.wustl.edu	37	X	74519569	74519569	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_145052.3	+1	reviewed	e5-1	1.000	208	0%	194	34%	0	-	-	-	-	-
POU3F4	5456	genome.wustl.edu	37	X	82763390	82763390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000307.3	+1	reviewed	p.A20T	1.000	53	0%	50	44%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
DRP2	1821	genome.wustl.edu	37	X	100496667	100496667	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001939.2	+1	reviewed	p.P190	0.053	74	0%	64	39.1%	0	-	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
CXorf57	55086	genome.wustl.edu	37	X	105905403	105905403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018015.5	+1	validated	p.E713K	0.003	223	0%	216	33.3%	0	-	possibly_damaging(0.571)	tolerated(0.13)	neutral(0.448)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114425237	114425237	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145346.1	+1	validated	p.Y411	0.017	16	0%	20	30%	0	-	-	-	-	NULL
CT47B1	643311	genome.wustl.edu	37	X	120009076	120009076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001145718.1	-1	validated	p.R150H	0.001	164	0%	188	32.4%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
FHL1	2273	genome.wustl.edu	37	X	135289980	135289980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001449.4	+1	reviewed	p.V121I	0.282	112	0%	118	29.7%	48	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FGF13	2258	genome.wustl.edu	37	X	137939732	137939732	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_001139500.1	-1	reviewed	p.H53	1.000	417	0%	505	30.5%	0	-	-	-	-	superfamily_Cytok_IL1_like
ATP11C	286410	genome.wustl.edu	37	X	138820076	138820076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_173694.4	-1	validated	p.R1099M	1.000	153	0%	145	30.3%	0	-	possibly_damaging(0.46)	deleterious(0.02)	deleterious(0.534)	NULL
FMR1	2332	genome.wustl.edu	37	X	147026502	147026502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_002024.5	+1	reviewed	p.G529*	1.000	269	0%	324	23.5%	17	0%	-	-	-	NULL
MTM1	4534	genome.wustl.edu	37	X	149814323	149814323	+	Silent	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_000252.2	+1	reviewed	p.S282	0.947	125	0%	150	38.7%	2	50%	-	-	-	HMMPfam_Myotub-related,superfamily_SSF52799
FATE1	89885	genome.wustl.edu	37	X	150889907	150889907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_033085.2	+1	reviewed	p.G92D	0.000	99	0%	120	30%	0	-	possibly_damaging(0.815)	tolerated(0.18)	neutral(0.363)	NULL
CNGA2	1260	genome.wustl.edu	37	X	150908083	150908083	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005140.1	+1	reviewed	p.R85*	0.657	192	0%	204	33.3%	0	-	-	-	-	NULL
MAGEA6	4105	genome.wustl.edu	37	X	151869728	151869728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_005363.2	+1	reviewed	p.V140I	0.000	278	0.4%	333	33.3%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_MAGE
VBP1	7411	genome.wustl.edu	37	X	154444803	154444803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_003372.5	+1	reviewed	p.T15I	0.000	74	0%	74	36.5%	5	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TMLHE	55217	genome.wustl.edu	37	X	154741390	154741390	+	Silent	SNP	G	G	A	novel		TCGA-D1-A174-01A-11D-A12J-09	TCGA-D1-A174-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	96b511df-3a69-4168-908c-662060b4f976	e9563a06-0b86-4986-976e-43d4040f1d61	NM_018196.3	-1	reviewed	p.Y234	1.000	208	0%	277	13.7%	13	7.6%	-	-	-	HMMPfam_TauD,superfamily_Clavaminate synthase-like
