Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MMEL1	79258	broad.mit.edu	37	1	2537001	2537001	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:2537001C>T	uc001ajy.2	-	9	1026	c.812G>A	c.(811-813)CGG>CAG	p.R271Q	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	271	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		ACCCACCTTCCGGTTGCTGCC	0.647													46	59					0	0	0.139131	0	0
CLCN6	1185	broad.mit.edu	37	1	11900256	11900256	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:11900256G>A	uc001ate.3	+	23	2699	c.2586G>A	c.(2584-2586)CTG>CTA	p.L862L	CLCN6_uc010oat.1_Silent_p.L578L|CLCN6_uc010oau.1_Silent_p.L840L|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	862	CBS 2.|Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCCCGGCTGAGGCAGCACT	0.607													81	115					0	0	0.139131	0	0
SPEN	23013	broad.mit.edu	37	1	16256225	16256225	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:16256225G>A	uc001axk.1	+	11	3694	c.3490G>A	c.(3490-3492)GAT>AAT	p.D1164N	SPEN_uc010obp.1_Missense_Mutation_p.D1123N	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1164					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CATTGACATCGATCACACGCA	0.393													18	43					0	0	0.033300	0	0
EPHA2	1969	broad.mit.edu	37	1	16474972	16474972	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:16474972C>T	uc001aya.1	-	3	861	c.724G>A	c.(724-726)GAG>AAG	p.E242K	EPHA2_uc010oca.1_Missense_Mutation_p.E242K	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	242	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	ATACGGGGCTCTTCACCCCCC	0.667													45	130					0	0	0.139131	0	0
SERINC2	347735	broad.mit.edu	37	1	31896551	31896551	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:31896551C>T	uc010ogh.1	+	2	264	c.63C>T	c.(61-63)CTC>CTT	p.L21L	SERINC2_uc010ogg.1_Silent_p.L18L|SERINC2_uc009vtw.1_Silent_p.L17L|SERINC2_uc001bst.2_Silent_p.L17L|SERINC2_uc001bsu.2_5'UTR|SERINC2_uc001bsv.2_5'UTR	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	17	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		CGTCCTGCCTCTGCGGCTCTG	0.677													13	97					0	0	0.093190	0	0
ZMYM4	9202	broad.mit.edu	37	1	35824609	35824609	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:35824609C>T	uc001byt.2	+	3	249	c.169C>T	c.(169-171)CCG>TCG	p.P57S	ZMYM4_uc009vuu.2_Missense_Mutation_p.P25S|ZMYM4_uc001byu.2_Intron|ZMYM4_uc009vuv.2_5'UTR	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	57					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTATGGAATGCCGAATCAAAC	0.383													4	154					0	0	0.009096	0	0
EPHA10	284656	broad.mit.edu	37	1	38227478	38227478	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:38227478C>T	uc009vvi.2	-	3	535	c.449G>A	c.(448-450)CGC>CAC	p.R150H	EPHA10_uc001cbw.3_Missense_Mutation_p.R150H	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	150	Extracellular (Potential).		R -> H (in a gastric adenocarcinoma sample; somatic mutation).			extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity	p.R150H(1)		breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GTCGATTTTGCGGGGCCGGCT	0.667													26	65					0	0	0.111260	0	0
KDM4A	9682	broad.mit.edu	37	1	44157218	44157218	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:44157218G>A	uc001cjx.2	+	15	2460	c.2294G>A	c.(2293-2295)CGG>CAG	p.R765Q	KDM4A_uc010oki.1_Intron	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	765	PHD-type 1.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						ATGTGTTCTCGGTGTTCAGCC	0.502													9	212					0	0	0.058154	0	0
HAX1	10456	broad.mit.edu	37	1	154245822	154245822	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:154245822C>T	uc001fes.2	+	2	225	c.64C>T	c.(64-66)CCC>TCC	p.P22S	HAX1_uc001fet.2_Intron|HAX1_uc010peo.1_Missense_Mutation_p.P22S|HAX1_uc009wou.2_5'UTR|HAX1_uc009wov.2_5'UTR	NM_006118	NP_006109	O00165	HAX1_HUMAN	HCLS1 associated protein X-1 isoform a	22	Required for localization in mitochondria (By similarity).					actin cytoskeleton|cytoplasmic membrane-bounded vesicle|lamellipodium|mitochondrion|nuclear membrane|sarcoplasmic reticulum|soluble fraction	interleukin-1 binding|protein N-terminus binding				0	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCACAGAGATCCCTTTTTTGG	0.488									Kostmann_syndrome				40	70					0	0	0.117977	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155931936	155931936	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:155931936C>T	uc001fmt.2	-	10	1297	c.1179G>A	c.(1177-1179)AAG>AAA	p.K393K	ARHGEF2_uc001fmr.2_Silent_p.K365K|ARHGEF2_uc001fms.2_Silent_p.K392K|ARHGEF2_uc001fmu.2_Silent_p.K437K|ARHGEF2_uc010pgt.1_Silent_p.K366K|ARHGEF2_uc010pgu.1_Silent_p.K438K	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	393	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GTAACGGGTACTTGGTGATGC	0.642													35	85					0	0	0.059317	0	0
MAEL	84944	broad.mit.edu	37	1	166963303	166963303	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:166963303G>A	uc001gdy.1	+	5	591	c.520G>A	c.(520-522)GCA>ACA	p.A174T	MAEL_uc001gdz.1_Missense_Mutation_p.A143T|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	174					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TTGTCAGGCTGCAAGTAAGTA	0.323													15	18					0	0	0.119110	0	0
ADCY10	55811	broad.mit.edu	37	1	167852753	167852753	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:167852753G>A	uc001ger.2	-	9	1240	c.942C>T	c.(940-942)ATC>ATT	p.I314I	ADCY10_uc009wvk.2_Silent_p.I222I|ADCY10_uc010plj.1_Silent_p.I161I|ADCY10_uc009wvl.2_Silent_p.I313I|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	314	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AGGCATCCTGGATGGCTGGGC	0.448													25	129					0	0	0.099896	0	0
RALGPS2	55103	broad.mit.edu	37	1	178846666	178846666	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:178846666C>T	uc001glz.2	+	9	979	c.641C>T	c.(640-642)TCA>TTA	p.S214L	RALGPS2_uc001gly.1_Missense_Mutation_p.S214L|RALGPS2_uc010pnb.1_Missense_Mutation_p.S214L	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	214	Ras-GEF.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						TACATCGATTCAGCATACCCA	0.323													9	56					0	0	0.069234	0	0
ARPC5	10092	broad.mit.edu	37	1	183604680	183604680	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:183604680C>T	uc001gql.2	-	1	306	c.115G>A	c.(115-117)GAG>AAG	p.E39K	RGL1_uc010pof.1_5'Flank|RGL1_uc001gqm.2_5'Flank|RGL1_uc010pog.1_5'Flank|RGL1_uc010poh.1_5'Flank	NM_005717	NP_005708	O15511	ARPC5_HUMAN	actin related protein 2/3 complex subunit 5	39					actin cytoskeleton organization|cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|structural constituent of cytoskeleton				0						ACCTCGCCCTCGTCGGGCCCG	0.667													3	23					0	0	0.115264	0	0
CRB1	23418	broad.mit.edu	37	1	197390187	197390187	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:197390187G>A	uc001gtz.2	+	6	1364	c.1229G>A	c.(1228-1230)GGT>GAT	p.G410D	CRB1_uc010poz.1_Missense_Mutation_p.G341D|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G298D|CRB1_uc010ppb.1_Missense_Mutation_p.G410D|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Missense_Mutation_p.G59D	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	410	Extracellular (Potential).|EGF-like 10; calcium-binding (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAAAATGGTGGTACTTGTGAG	0.368													54	88					0	0	0.139131	0	0
CABC1	56997	broad.mit.edu	37	1	227152739	227152739	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:227152739C>T	uc001hqm.1	+	8	3635	c.216C>T	c.(214-216)TTC>TTT	p.F72F	CABC1_uc010pvp.1_Silent_p.F35F|CABC1_uc001hqn.1_Silent_p.F72F|CABC1_uc009xeq.1_Silent_p.F20F|CABC1_uc010pvq.1_Intron|CABC1_uc010pvr.1_5'Flank	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	72					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				CTGAGAACTTCGGCGGCCCAG	0.592													6	52					0	0	0.021553	0	0
COG2	22796	broad.mit.edu	37	1	230804495	230804495	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:230804495A>G	uc001htw.2	+	6	710	c.559A>G	c.(559-561)AGC>GGC	p.S187G	COG2_uc001htx.2_Missense_Mutation_p.S187G|COG2_uc010pwc.1_Missense_Mutation_p.S60G	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	187					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TGCTGTTCAAAGCAAAGGCAT	0.378													21	129					0	0	0.062417	0	0
SFXN4	119559	broad.mit.edu	37	10	120917551	120917551	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr10:120917551C>T	uc001leb.2	-	7	429	c.384G>A	c.(382-384)CTG>CTA	p.L128L	SFXN4_uc001ldy.2_Silent_p.L12L|SFXN4_uc001ldz.2_Silent_p.L12L|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	128	Helical; (Potential).				iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		TGATCCCTTTCAGTGGCGTCA	0.413													34	51					0	0	0.059317	0	0
MPEG1	219972	broad.mit.edu	37	11	58980271	58980271	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:58980271G>A	uc001nnu.3	-	1	224	c.68C>T	c.(67-69)TCG>TTG	p.S23L		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	23						integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				CATCTCTCCCGAAGGCTTGCC	0.552													34	129					0	0	0.069456	0	0
HNRNPUL2	221092	broad.mit.edu	37	11	62491178	62491178	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:62491178G>A	uc001nuw.2	-	4	965	c.772C>T	c.(772-774)CAA>TAA	p.Q258*	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	258	B30.2/SPRY.				cell killing	nucleus	ATP binding|nucleic acid binding				0						TTGCTCACTTGAAAATGCAGA	0.458													10	35					0	0	0.058154	0	0
BBS1	582	broad.mit.edu	37	11	66298426	66298426	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:66298426G>A	uc001oij.1	+	15	1547	c.1535G>A	c.(1534-1536)CGT>CAT	p.R512H	BBS1_uc001oii.1_Missense_Mutation_p.R549H|BBS1_uc010rpg.1_Missense_Mutation_p.R415H|BBS1_uc001oik.1_Missense_Mutation_p.R436H|BBS1_uc001oil.1_Missense_Mutation_p.R383H|ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron|BBS1_uc010rph.1_Missense_Mutation_p.R180H	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	512					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						TCAACAACCCGTCCTGTCCTG	0.572									Bardet-Biedl_syndrome				51	81					0	0	0.139131	0	0
CCS	9973	broad.mit.edu	37	11	66366699	66366699	+	Silent	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:66366699C>G	uc001oir.2	+	3	268	c.225C>G	c.(223-225)CTC>CTG	p.L75L	CCS_uc001ois.2_5'Flank	NM_005125	NP_005116	O14618	CCS_HUMAN	copper chaperone for superoxide dismutase	75	HMA.				intracellular copper ion transport|oxidation-reduction process|removal of superoxide radicals	cytosol|mitochondrial inner membrane|nucleus|soluble fraction	copper ion transmembrane transporter activity|protein binding|superoxide dismutase copper chaperone activity|zinc ion binding				0						AGGCGGTACTCAAGGGCATGG	0.607													26	48					0	0	0.091800	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67174345	67174345	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:67174345G>A	uc001ola.2	+	8	725	c.696G>A	c.(694-696)CGG>CGA	p.R232R	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_Intron|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	232	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TGCTGCGGCGGCTGCTTCCGC	0.701													3	40					0	0	0.115264	0	0
PIWIL4	143689	broad.mit.edu	37	11	94341823	94341823	+	Silent	SNP	C	T	T	rs146415204	byFrequency	TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:94341823C>T	uc001pfa.2	+	15	2125	c.1914C>T	c.(1912-1914)TGC>TGT	p.C638C	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	638	Piwi.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TTGTTGGATGCGTGGCCAGTG	0.388													35	157					0	0	0.111260	0	0
PHLDB1	23187	broad.mit.edu	37	11	118498318	118498318	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr11:118498318C>T	uc001ptr.1	+	7	1132	c.779C>T	c.(778-780)TCA>TTA	p.S260L	PHLDB1_uc010ryh.1_Missense_Mutation_p.S259L|PHLDB1_uc001pts.2_Missense_Mutation_p.S260L|PHLDB1_uc001ptt.2_Missense_Mutation_p.S260L|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.S60L|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	260											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CCACTCTCTTCACCAGCCAGC	0.622													38	160					0	0	0.080422	0	0
PZP	5858	broad.mit.edu	37	12	9354941	9354941	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr12:9354941C>T	uc001qvl.2	-	4	483	c.454G>A	c.(454-456)GAA>AAA	p.E152K	PZP_uc009zgl.2_Missense_Mutation_p.E21K	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						CGAAAATTTTCATCCACGGAG	0.443													9	48					0	0	0.058154	0	0
RAN	5901	broad.mit.edu	37	12	131359155	131359155	+	Nonsense_Mutation	SNP	G	A	A	rs11546493		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr12:131359155G>A	uc001uir.2	+	5	377	c.312G>A	c.(310-312)TGG>TGA	p.W104*	RAN_uc010tbk.1_Nonsense_Mutation_p.W16*|RAN_uc010tbl.1_Nonsense_Mutation_p.W16*|RAN_uc001uis.2_Nonsense_Mutation_p.W124*	NM_006325	NP_006316	P62826	RAN_HUMAN	ras-related nuclear protein	104					androgen receptor signaling pathway|cell division|DNA metabolic process|mitosis|mitotic spindle organization|positive regulation of transcription, DNA-dependent|protein export from nucleus|RNA export from nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|melanosome|nuclear pore|nucleoplasm	androgen receptor binding|chromatin binding|GTP binding|GTPase activity|transcription coactivator activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	Lung NSC(355;7.46e-07)|all_epithelial(31;7.36e-06)		OV - Ovarian serous cystadenocarcinoma(86;9.18e-49)|Epithelial(86;1.42e-45)|all cancers(50;6.28e-40)		TGCCTAACTGGCATAGAGATC	0.413													3	74					0	0	0.115264	0	0
ANKLE2	23141	broad.mit.edu	37	12	133331269	133331269	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr12:133331269G>A	uc001ukx.2	-	2	699	c.632C>T	c.(631-633)GCG>GTG	p.A211V	ANKLE2_uc001uky.3_Missense_Mutation_p.A149V	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	211						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		ACCATTTCTCGCTGGGACGTC	0.542													23	135					0	0	0.076483	0	0
FRY	10129	broad.mit.edu	37	13	32749764	32749764	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:32749764G>C	uc001utx.2	+	20	2912	c.2416G>C	c.(2416-2418)GAT>CAT	p.D806H	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	806					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AGCAGTTTCGGATTCAGTAAG	0.378													28	40					0	0	0.099896	0	0
NUFIP1	26747	broad.mit.edu	37	13	45517691	45517691	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:45517691C>G	uc001uzp.2	-	9	1299	c.1257G>C	c.(1255-1257)AAG>AAC	p.K419N		NM_012345	NP_036477	Q9UHK0	NUFP1_HUMAN	nuclear fragile X mental retardation protein	419					box C/D snoRNP assembly|positive regulation of transcription from RNA polymerase II promoter|RNA processing	actin cytoskeleton|cytosolic ribosome|nuclear matrix|nucleolus|perichromatin fibrils|pre-snoRNP complex|presynaptic active zone|transcription elongation factor complex	DNA binding|identical protein binding|protein binding, bridging|RNA binding|zinc ion binding				0		Lung NSC(96;8.23e-05)|Breast(139;0.00378)|Prostate(109;0.0107)|all_hematologic(4;0.014)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)|Acute lymphoblastic leukemia(4;0.143)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000306)|BRCA - Breast invasive adenocarcinoma(63;0.125)		GGTTCTCACTCTTGGCTTCTG	0.378													33	126					0	0	0.144211	0	0
SETDB2	83852	broad.mit.edu	37	13	50034278	50034278	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:50034278G>A	uc001vcz.2	+	3	958	c.52G>A	c.(52-54)GAT>AAT	p.D18N	SETDB2_uc010adg.2_Missense_Mutation_p.D6N|SETDB2_uc001vcy.3_Missense_Mutation_p.D18N|SETDB2_uc010adh.2_Missense_Mutation_p.D18N|SETDB2_uc001vda.2_Missense_Mutation_p.D18N	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	18					cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		GCTAGAAGATGATGGAAAAGT	0.343													20	92					0	0	0.049695	0	0
GPR183	1880	broad.mit.edu	37	13	99948184	99948184	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:99948184A>C	uc001vog.2	-	2	390	c.216T>G	c.(214-216)AAT>AAG	p.N72K	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron	NM_004951	NP_004942	P32249	GP183_HUMAN	EBV-induced G protein-coupled receptor 2	72	Cytoplasmic (Potential).				humoral immune response|mature B cell differentiation involved in immune response	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0						AAATCACCAAATTTGTTGAAT	0.433													13	92					0	0	0.093190	0	0
CUL4A	8451	broad.mit.edu	37	13	113909425	113909425	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:113909425C>G	uc010tjy.1	+	19	2028	c.2017C>G	c.(2017-2019)CAG>GAG	p.Q673E	CUL4A_uc010tjx.1_Missense_Mutation_p.Q573E|CUL4A_uc010agu.2_Missense_Mutation_p.Q534E|CUL4A_uc010tjz.1_Missense_Mutation_p.Q352E	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	673					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CAATCAAATTCAGATGAAGGA	0.338													13	56					0	0	0.105934	0	0
RASA3	22821	broad.mit.edu	37	13	114780743	114780743	+	Silent	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:114780743C>G	uc001vui.2	-	14	1478	c.1347G>C	c.(1345-1347)CCG>CCC	p.P449P	RASA3_uc010tkk.1_Silent_p.P417P|RASA3_uc001vuj.2_Silent_p.P66P	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	449	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			ACATGACGGTCGGGCAGCTCA	0.617													45	99					0	0	0.139131	0	0
RNASE13	440163	broad.mit.edu	37	14	21502046	21502046	+	Silent	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:21502046G>C	uc001vzj.2	-	2	540	c.402C>G	c.(400-402)CTC>CTG	p.L134L	NDRG2_uc010tll.1_Intron	NM_001012264	NP_001012264	Q5GAN3	RNS13_HUMAN	ribonuclease, RNase A family, 13 precursor	134						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			upper_aerodigestive_tract(1)	1	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.019)		AGAGTAGGTAGAGCTTCTGGT	0.532													51	236					0	0	0.139131	0	0
MYH7	4625	broad.mit.edu	37	14	23894516	23894516	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:23894516C>T	uc001wjx.2	-	21	2504	c.2398G>A	c.(2398-2400)GAG>AAG	p.E800K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	800	IQ.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTTTTGTACTCCATTCTGGCG	0.592													19	115					0	0	0.043863	0	0
MYH7	4625	broad.mit.edu	37	14	23894521	23894521	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:23894521C>T	uc001wjx.2	-	21	2499	c.2393G>A	c.(2392-2394)AGA>AAA	p.R798K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	798	IQ.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTACTCCATTCTGGCGAGCAC	0.592													20	115					0	0	0.049695	0	0
ABCD4	5826	broad.mit.edu	37	14	74763119	74763119	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:74763119G>T	uc001xpr.2	-	5	611	c.459C>A	c.(457-459)TTC>TTA	p.F153L	ABCD4_uc001xps.2_Translation_Start_Site|ABCD4_uc001xpt.2_Translation_Start_Site|ABCD4_uc010tur.1_Missense_Mutation_p.F66L|ABCD4_uc001xpu.2_Translation_Start_Site|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	153	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		GCTGCCGGCAGAATCGCTCCA	0.577													21	117					4.96729e-08	5.24846e-08	0.049695	1	0
ZC3H14	79882	broad.mit.edu	37	14	89039043	89039043	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:89039043G>A	uc001xww.2	+	6	778	c.553G>A	c.(553-555)GAC>AAC	p.D185N	ZC3H14_uc010twd.1_Missense_Mutation_p.D185N|ZC3H14_uc010twe.1_Missense_Mutation_p.D185N|ZC3H14_uc001xwx.2_Missense_Mutation_p.D185N|ZC3H14_uc010twf.1_Missense_Mutation_p.D30N|ZC3H14_uc001xwy.2_Missense_Mutation_p.D151N|ZC3H14_uc010twg.1_Missense_Mutation_p.D30N	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	185						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						CATTGACGAAGACCTCAACTT	0.433													62	155					0	0	0.139131	0	0
FAM181A	90050	broad.mit.edu	37	14	94395423	94395423	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:94395423G>C	uc001ybz.1	+	3	1285	c.978G>C	c.(976-978)CAG>CAC	p.Q326H	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.Q264H|FAM181A_uc001yca.1_Missense_Mutation_p.Q264H	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	326											0						GCCTGGGGCAGAAGGTGTGCA	0.647													28	68					0	0	0.108266	0	0
SETD3	84193	broad.mit.edu	37	14	99865319	99865319	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:99865319C>T	uc001ygc.2	-	13	1652	c.1482G>A	c.(1480-1482)GAG>GAA	p.E494E		NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	494					peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				GAGCCTTTTCCTCCATCTGTT	0.502													45	227					0	0	0.111260	0	0
YY1	7528	broad.mit.edu	37	14	100705962	100705962	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:100705962C>T	uc001ygy.1	+	1	861	c.381C>T	c.(379-381)TTC>TTT	p.F127F		NM_003403	NP_003394	P25490	TYY1_HUMAN	YY1 transcription factor	127					cell differentiation|cellular response to UV|double-strand break repair via homologous recombination|negative regulation of transcription from RNA polymerase II promoter|response to UV-C|spermatogenesis	Ino80 complex|nuclear matrix|plasma membrane	four-way junction DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding				0		Melanoma(154;0.152)				AGGACGGCTTCGAGGATCAGA	0.602													30	126					0	0	0.050027	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102481656	102481656	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:102481656C>T	uc001yks.2	+	35	7393	c.7229C>T	c.(7228-7230)TCC>TTC	p.S2410F	DYNC1H1_uc001ykt.1_5'UTR	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2410	AAA 2 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GAGGCCGCTTCCCCCATGCTG	0.517													11	19					0	0	0.069234	0	0
AHNAK2	113146	broad.mit.edu	37	14	105417015	105417015	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:105417015G>A	uc010axc.1	-	7	4893	c.4773C>T	c.(4771-4773)CTC>CTT	p.L1591L	AHNAK2_uc001ypx.2_Silent_p.L1491L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1591						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGGGCCCCTTGAGGTCCACTT	0.592													58	374					0	0	0.139131	0	0
NUDT14	256281	broad.mit.edu	37	14	105643016	105643016	+	Missense_Mutation	SNP	C	T	T	rs141847132		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr14:105643016C>T	uc010tyn.1	-	4	397	c.283G>A	c.(283-285)GGC>AGC	p.G95S	NUDT14_uc001yqi.2_RNA	NM_177533	NP_803877	O95848	NUD14_HUMAN	nudix-type motif 14	95	Nudix hydrolase.					cytoplasm	metal ion binding|protein binding|UDP-sugar diphosphatase activity			skin(1)	1		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CCCGCTGAGCCGGGCAGGGCT	0.677										HNSCC(42;0.11)			15	86					0	0	0.146539	0	0
TGM5	9333	broad.mit.edu	37	15	43527686	43527686	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:43527686G>C	uc001zrd.1	-	10	1703	c.1695C>G	c.(1693-1695)ATC>ATG	p.I565M	TGM5_uc001zrc.1_Missense_Mutation_p.I222M|TGM5_uc001zre.1_Missense_Mutation_p.I483M	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	565					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	GAGAGAGTGTGATGAACGCTG	0.552													26	58					0	0	0.091800	0	0
CATSPER2	117155	broad.mit.edu	37	15	43928408	43928408	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:43928408C>T	uc001zsh.2	-	8	1067	c.852G>A	c.(850-852)CCG>CCA	p.P284P	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.P284P|CATSPER2_uc001zsj.2_Silent_p.P284P	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	284					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CCAGGGAATTCGGGAGGTCCC	0.418													10	64					0	0	0.119110	0	0
FRMD5	84978	broad.mit.edu	37	15	44166325	44166325	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:44166325C>T	uc001ztl.2	-	14	1648	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K	FRMD5_uc001ztj.1_Missense_Mutation_p.E164K|FRMD5_uc001ztk.1_Missense_Mutation_p.E397K|FRMD5_uc010uef.1_Missense_Mutation_p.E164K|FRMD5_uc001ztm.2_Missense_Mutation_p.E164K|FRMD5_uc001ztn.2_Missense_Mutation_p.E257K	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	491						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		ACCTGTTCCTCCTCGGGCCCG	0.567													39	111					0	0	0.080422	0	0
DMXL2	23312	broad.mit.edu	37	15	51755661	51755661	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:51755661C>T	uc002abf.2	-	33	8063	c.7838G>A	c.(7837-7839)CGA>CAA	p.R2613Q	DMXL2_uc002abd.2_Missense_Mutation_p.R684Q|DMXL2_uc010ufy.1_Missense_Mutation_p.R2614Q|DMXL2_uc010bfa.2_Missense_Mutation_p.R1977Q	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2613						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATGCCAAAGTCGTTTGACTGG	0.303													33	89					0	0	0.074837	0	0
MESDC2	23184	broad.mit.edu	37	15	81274372	81274372	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:81274372C>T	uc002bfy.1	-	2	438	c.365G>A	c.(364-366)GGA>GAA	p.G122E	MESDC2_uc002bfx.2_RNA|MESDC2_uc010uno.1_Intron	NM_015154	NP_055969	Q14696	MESD_HUMAN	mesoderm development candidate 2	122	Chaperone domain (By similarity).				mesoderm development|protein folding|Wnt receptor signaling pathway	endoplasmic reticulum					0						AGTAGGGCTTCCTGATACAGT	0.468													23	76					0	0	0.069288	0	0
ZNF774	342132	broad.mit.edu	37	15	90903975	90903975	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:90903975G>A	uc002bpk.3	+	4	1098	c.912G>A	c.(910-912)TCG>TCA	p.S304S		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	304	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GCCAGAGCTCGGATTTGATTA	0.512													9	196					0	0	0.069234	0	0
CCDC78	124093	broad.mit.edu	37	16	773855	773855	+	Splice_Site	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:773855A>G	uc002cjg.2	-	11	1239	c.1133_splice	c.e11+1	p.Q378_splice	CCDC78_uc002cjf.2_Splice_Site_p.Q227_splice|CCDC78_uc002cji.3_3'UTR|CCDC78_uc002cjj.3_3'UTR|CCDC78_uc002cjh.2_Splice_Site_p.Q137_splice	NM_001031737	NP_001026907	A2IDD5	CCD78_HUMAN	coiled-coil domain containing 78											central_nervous_system(1)	1		Hepatocellular(780;0.0218)				GAGGGCACTCACTGTGGCTCT	0.657													6	18					0	0	0.021553	0	0
ABCA3	21	broad.mit.edu	37	16	2348517	2348517	+	Missense_Mutation	SNP	C	T	T	rs148843652	byFrequency	TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:2348517C>T	uc002cpy.1	-	15	2478	c.1766G>A	c.(1765-1767)CGG>CAG	p.R589Q	ABCA3_uc010bsk.1_Missense_Mutation_p.R531Q|ABCA3_uc010bsl.1_Missense_Mutation_p.R589Q	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	589	ABC transporter 1.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GATGTATGCCCGTCCACTGGT	0.592													22	133					0	0	0.091800	0	0
SMG1	23049	broad.mit.edu	37	16	18841063	18841063	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:18841063C>T	uc002dfm.2	-	54	9511	c.9148G>A	c.(9148-9150)GAA>AAA	p.E3050K	SMG1_uc010bwb.2_Missense_Mutation_p.E2910K|SMG1_uc010bwa.2_Missense_Mutation_p.E1781K	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3050					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TTCTGATCTTCAAGTGAACTT	0.328													13	52					0	0	0.119110	0	0
DNAH3	55567	broad.mit.edu	37	16	20975107	20975107	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:20975107C>G	uc010vbe.1	-	53	10099	c.10099G>C	c.(10099-10101)GAG>CAG	p.E3367Q	DNAH3_uc010vbd.1_Missense_Mutation_p.E802Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3367					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGTCCTTCTCAAACAGAGAA	0.493													24	83					0	0	0.091800	0	0
UQCRC2	7385	broad.mit.edu	37	16	21994417	21994417	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:21994417G>A	uc002djx.2	+	14	1423	c.1287G>A	c.(1285-1287)AAG>AAA	p.K429K	UQCRC2_uc002djy.2_Missense_Mutation_p.R378K|UQCRC2_uc010bxa.2_RNA	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II	429					aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		AGGCGGCAAAGAAGTTTGTTT	0.338													11	89					0	0	0.132662	0	0
LCMT1	51451	broad.mit.edu	37	16	25172470	25172470	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:25172470C>T	uc002dnx.1	+	6	672	c.514C>T	c.(514-516)CTC>TTC	p.L172F	LCMT1_uc002dny.1_Intron|LCMT1_uc002dnz.1_Missense_Mutation_p.L72F|LCMT1_uc002doa.1_Intron	NM_016309	NP_057393	Q9UIC8	LCMT1_HUMAN	leucine carboxyl methyltransferase 1 isoform a	172	S-adenosyl-L-methionine binding.						protein binding|protein C-terminal carboxyl O-methyltransferase activity|S-adenosylmethionine-dependent methyltransferase activity				0				GBM - Glioblastoma multiforme(48;0.0336)	L-Leucine(DB00149)	TGGAGCAGATCTCCGAGACCT	0.348													6	19					0	0	0.021553	0	0
FAM65A	79567	broad.mit.edu	37	16	67573991	67573991	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:67573991G>A	uc010vjp.1	+	7	606	c.510G>A	c.(508-510)CGG>CGA	p.R170R	FAM65A_uc010cei.1_5'UTR|FAM65A_uc002eth.2_Silent_p.R150R|FAM65A_uc010cej.2_Silent_p.R153R|FAM65A_uc002eti.1_Silent_p.R113R|FAM65A_uc010vjq.1_Silent_p.R164R|FAM65A_uc002etj.1_Silent_p.R149R|FAM65A_uc002etk.2_Silent_p.R149R	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	154						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		GTGTCCAGCGGCGTCTCCGGG	0.627													4	229					0	0	0.014758	0	0
DPEP2	64174	broad.mit.edu	37	16	68026017	68026017	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:68026017C>T	uc010cey.2	-	3	634	c.470G>A	c.(469-471)CGC>CAC	p.R157H	DPEP2_uc002evd.3_Missense_Mutation_p.R157H|DPEP2_uc002eve.2_Missense_Mutation_p.R157H|DPEP2_uc002evf.2_RNA|DPEP2_uc002evg.2_Missense_Mutation_p.A115T	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	157					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		ACACATGCGGCGTATGAGGTC	0.577													26	151					0	0	0.091800	0	0
NFAT5	10725	broad.mit.edu	37	16	69727754	69727754	+	Silent	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:69727754C>G	uc002exm.1	+	12	5180	c.3972C>G	c.(3970-3972)CCC>CCG	p.P1324P	NFAT5_uc002exi.2_Silent_p.P1248P|NFAT5_uc002exj.1_Silent_p.P1248P|NFAT5_uc002exk.1_Silent_p.P1248P|NFAT5_uc002exl.1_Silent_p.P1342P|NFAT5_uc002exn.1_Silent_p.P1341P|NFAT5_uc002exo.1_RNA	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1324					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AGCAACAGCCCATGCAATTTC	0.463													27	49					0	0	0.064281	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	12					0	0	0.115264	0	0
ACAP1	9744	broad.mit.edu	37	17	7253489	7253489	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:7253489C>G	uc002ggd.2	+	20	2211	c.2005C>G	c.(2005-2007)CGA>GGA	p.R669G	KCTD11_uc002gge.3_5'Flank	NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	669	Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TCTGGGGGCTCGAGACTCTGA	0.637													27	75					0	0	0.045705	0	0
MED9	55090	broad.mit.edu	37	17	17380479	17380479	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:17380479C>G	uc002grh.1	+	1	180	c.124C>G	c.(124-126)CAA>GAA	p.Q42E		NM_018019	NP_060489	Q9NWA0	MED9_HUMAN	mediator complex subunit 9	42	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		protein binding				0						ccctgcgcctcaaccgcagca	0.289													4	9					0	0	0.047766	0	0
CCDC144B	284047	broad.mit.edu	37	17	18528735	18528735	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:18528735C>T	uc002gub.1	-	1	111	c.26G>A	c.(25-27)CGG>CAG	p.R9Q	CCDC144B_uc002gua.3_RNA|CCDC144B_uc010vyc.1_RNA|CCDC144B_uc002guc.1_Missense_Mutation_p.R9Q	NM_182568	NP_872374			coiled-coil domain containing 144B											ovary(1)|skin(1)	2						AGCCCCTCCCCGCTTTTCTCC	0.642													4	15					0	0	0.009096	0	0
MYO18A	399687	broad.mit.edu	37	17	27430627	27430627	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:27430627C>G	uc002hdt.1	-	21	3655	c.3497G>C	c.(3496-3498)GGC>GCC	p.G1166A	MYO18A_uc010wbc.1_Missense_Mutation_p.G708A|MYO18A_uc002hds.2_Missense_Mutation_p.G708A|MYO18A_uc010csa.1_Missense_Mutation_p.G1166A|MYO18A_uc002hdu.1_Missense_Mutation_p.G1166A|MYO18A_uc010wbd.1_Missense_Mutation_p.G835A	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1166	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CCGGCTCAGGCCCATGCAGCA	0.662													11	67					0	0	0.069234	0	0
NF1	4763	broad.mit.edu	37	17	29528441	29528441	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:29528441C>T	uc002hgg.2	+	11	1531	c.1198C>T	c.(1198-1200)CAG>TAG	p.Q400*	NF1_uc002hge.1_Nonsense_Mutation_p.Q400*|NF1_uc002hgf.1_Nonsense_Mutation_p.Q400*|NF1_uc002hgh.2_Nonsense_Mutation_p.Q400*|NF1_uc010csn.1_Nonsense_Mutation_p.Q260*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	400					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CTGCCTGGCTCAGAATTCACC	0.308			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			54	83					0	0	0.139131	0	0
DDX52	11056	broad.mit.edu	37	17	35986056	35986056	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:35986056C>T	uc002hoi.1	-	8	1059	c.1021G>A	c.(1021-1023)GCC>ACC	p.A341T	DDX52_uc002hoh.1_Missense_Mutation_p.A233T	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	341	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				GATGTGCAGGCCAGGAAAATG	0.443													17	69					0	0	0.038395	0	0
PSME3	10197	broad.mit.edu	37	17	40991365	40991365	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:40991365C>T	uc002ibr.2	+	10	878	c.652C>T	c.(652-654)CGG>TGG	p.R218W	PSME3_uc002ibp.2_Missense_Mutation_p.R157W|PSME3_uc002ibq.2_Missense_Mutation_p.R231W|PSME3_uc002ibs.2_Missense_Mutation_p.R229W|PSME3_uc010whd.1_Missense_Mutation_p.R105W	NM_005789	NP_005780	P61289	PSME3_HUMAN	proteasome activator subunit 3 isoform 1	218					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome activator complex	endopeptidase activator activity|identical protein binding|MDM2 binding|p53 binding				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		TATCAGCCTTCGGCTCATCAT	0.443													31	41					0	0	0.059317	0	0
TMEM100	55273	broad.mit.edu	37	17	53798408	53798408	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:53798408C>T	uc002iuj.3	-	2	335	c.24G>A	c.(22-24)GAG>GAA	p.E8E	TMEM100_uc002iuk.3_Silent_p.E8E	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	8						integral to membrane					0						CTCCCAGGATCTCCTTGATGG	0.498													35	129					0	0	0.059317	0	0
SRP68	6730	broad.mit.edu	37	17	74041399	74041399	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:74041399G>A	uc002jqk.1	-	12	1403	c.1368C>T	c.(1366-1368)CTC>CTT	p.L456L	SRP68_uc010wsu.1_Silent_p.L355L|SRP68_uc002jql.1_Silent_p.L418L|SRP68_uc002jqj.1_Silent_p.L117L	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa	456					response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						CCAGAGTCTTGAGGCCTATCT	0.483													26	109					0	0	0.125774	0	0
SPHK1	8877	broad.mit.edu	37	17	74383215	74383215	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:74383215G>C	uc002jrf.1	+	8	1512	c.703G>C	c.(703-705)GAT>CAT	p.D235H	SPHK1_uc002jrg.1_Missense_Mutation_p.D184H|SPHK1_uc002jrh.2_Missense_Mutation_p.D249H|SPHK1_uc002jrj.2_Missense_Mutation_p.D321H|SPHK1_uc002jri.2_Missense_Mutation_p.D235H|SPHK1_uc002jrk.3_Missense_Mutation_p.D235H|uc010wtd.1_RNA	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	235					'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						GGGCCCGGTAGATGCACACCT	0.642													13	47					0	0	0.105934	0	0
CBX4	8535	broad.mit.edu	37	17	77807985	77807985	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:77807985C>T	uc002jxe.2	-	5	1619	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	486	Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CTGGGCGGCTCCCCGGCCTCG	0.557													5	15					0	0	0.029380	0	0
PCSK4	54760	broad.mit.edu	37	19	1483434	1483434	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:1483434C>T	uc002ltb.1	-	12	1482	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	PCSK4_uc002lsz.2_5'UTR|PCSK4_uc002lta.2_Missense_Mutation_p.E286K	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	474					proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GATACGTTTTCCCTGATGTAG	0.697													11	36					0	0	0.119110	0	0
GADD45B	4616	broad.mit.edu	37	19	2477087	2477087	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:2477087C>T	uc002lwb.1	+	3	429	c.207C>T	c.(205-207)ATC>ATT	p.I69I	GADD45B_uc010dtd.1_Silent_p.I54I|GADD45B_uc002lwc.1_Silent_p.I54I	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	69					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGATGACATCGCCCTGCAAA	0.622											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	74					0	0	0.058154	0	0
JUNB	3726	broad.mit.edu	37	19	12903536	12903536	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:12903536C>T	uc002mvc.2	+	1	1227	c.951C>T	c.(949-951)CTC>CTT	p.L317L	JUNB_uc002mvb.2_RNA	NM_002229	NP_002220	P17275	JUNB_HUMAN	jun B proto-oncogene	317	Leucine-zipper.					chromatin|nucleus	protein dimerization activity|transcription coactivator activity|transcription corepressor activity			lung(2)|central_nervous_system(1)	3						CCGGCCTCCTCCGGGAGCAGG	0.652													4	24					0	0	0.009096	0	0
DNAJB1	3337	broad.mit.edu	37	19	14627324	14627324	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:14627324C>T	uc002myz.1	-	2	786	c.746G>A	c.(745-747)AGA>AAA	p.R249K	DNAJB1_uc010xnr.1_Missense_Mutation_p.R149K	NM_006145	NP_006136	P25685	DNJB1_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 1	249					chaperone cofactor-dependent protein refolding|response to unfolded protein	cytoplasm|nucleolus	heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(1328;0.0476)		AGAGCCATCTCTCTTAAAGAT	0.498													6	48					0	0	0.029380	0	0
DNAJB1	3337	broad.mit.edu	37	19	14627859	14627859	+	Splice_Site	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:14627859C>T	uc002myz.1	-	2	252	c.212_splice	c.e2-1	p.G71_splice	DNAJB1_uc010xnr.1_Splice_Site	NM_006145	NP_006136	P25685	DNJB1_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 1						chaperone cofactor-dependent protein refolding|response to unfolded protein	cytoplasm|nucleolus	heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(1328;0.0476)		CCCTTTAGGCCTGAAAAGCAG	0.547													10	47					0	0	0.038395	0	0
USHBP1	83878	broad.mit.edu	37	19	17374921	17374921	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:17374921G>A	uc002nfs.1	-	3	206	c.93C>T	c.(91-93)GTC>GTT	p.V31V	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Intron|USHBP1_uc010eam.1_5'UTR	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	31							PDZ domain binding			ovary(1)	1						TGGCTGCCTCGACCTCCTCTG	0.677													15	25					0	0	0.132662	0	0
ZNF14	7561	broad.mit.edu	37	19	19823848	19823848	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:19823848C>G	uc002nnk.1	-	4	396	c.242G>C	c.(241-243)GGA>GCA	p.G81A		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	81					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				AGTGGTTTCTCCACATTTGCT	0.348													47	79					0	0	0.139131	0	0
ZNF14	7561	broad.mit.edu	37	19	19825240	19825240	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:19825240C>G	uc002nnk.1	-	2	214	c.60G>C	c.(58-60)TTG>TTC	p.L20F		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	20	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				AAGAATCCAGCAAAGCCCACT	0.448													32	36					0	0	0.134883	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567													3	47					0	0	0.009096	0	0
ZNF540	163255	broad.mit.edu	37	19	38103818	38103818	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:38103818C>T	uc002ogq.2	+	5	1969	c.1637C>T	c.(1636-1638)TCT>TTT	p.S546F	ZNF540_uc002ogu.2_Missense_Mutation_p.S546F|ZNF540_uc010efq.2_Missense_Mutation_p.S514F	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	546					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAAATTCATTCTGGTTTAAAA	0.393													22	95					0	0	0.062417	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41447224	41447224	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:41447224C>T	uc010ehh.1	+	5	677	c.669C>T	c.(667-669)TTC>TTT	p.F223F	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450, family 2, subfamily B, polypeptide 6;									p.F223S(1)		ovary(1)|skin(1)	2						TCTCTGGCTTCTTGAAATACT	0.527													23	77					0	0	0.091800	0	0
SFRS16	11129	broad.mit.edu	37	19	45571722	45571722	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:45571722G>C	uc002pak.2	+	16	1850	c.1752G>C	c.(1750-1752)AAG>AAC	p.K584N	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.K522N|SFRS16_uc002pam.2_Intron	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	584	Arg-rich.				mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGATGCAGAAGGCGCTGAACA	0.602													13	80					0	0	0.132662	0	0
IGFL4	444882	broad.mit.edu	37	19	46543814	46543814	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:46543814A>G	uc002pdy.1	-	2	86	c.32T>C	c.(31-33)ATT>ACT	p.I11T		NM_001002923	NP_001002923	Q6B9Z1	IGFL4_HUMAN	IGF-like family member 4 precursor	11						extracellular region					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		AAGTTCAAAAATGAAGATGGC	0.498													15	64					0	0	0.119110	0	0
FGF21	26291	broad.mit.edu	37	19	49260187	49260187	+	Silent	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:49260187C>G	uc002pkn.1	+	3	812	c.240C>G	c.(238-240)CTC>CTG	p.L80L	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.L80L	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	80					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCTTAGGTCTCCTGCAGCTGA	0.597													81	122					0	0	0.139131	0	0
AP2A1	160	broad.mit.edu	37	19	50295238	50295238	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:50295238C>T	uc002ppn.2	+	5	731	c.520C>T	c.(520-522)CGA>TGA	p.R174*	AP2A1_uc010enj.1_Intron|AP2A1_uc002ppo.2_Nonsense_Mutation_p.R174*	NM_014203	NP_055018	O95782	AP2A1_HUMAN	adaptor-related protein complex 2, alpha 1	174					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|Golgi to endosome transport|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|clathrin coat of trans-Golgi network vesicle|cytosol	protein binding|protein transporter activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0023)|GBM - Glioblastoma multiforme(134;0.0157)		GTGCCTCCTTCGACTGTACAA	0.647													3	20					0	0	0.009096	0	0
ZNF525	170958	broad.mit.edu	37	19	53884257	53884257	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:53884257C>G	uc010eqn.2	+	4	510	c.317C>G	c.(316-318)TCA>TGA	p.S106*	ZNF525_uc002qbl.2_Intron|ZNF765_uc010ydx.1_Intron	NR_003699				Homo sapiens cDNA FLJ39718 fis, clone SMINT2013695.												0						CAGCTTGGATCAAGCTTTCAT	0.388													22	108					0	0	0.062417	0	0
NLRP2	55655	broad.mit.edu	37	19	55497595	55497595	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:55497595C>T	uc002qij.2	+	8	2364	c.2278C>T	c.(2278-2280)CTG>TTG	p.L760L	NLRP2_uc010yfp.1_Silent_p.L737L|NLRP2_uc010esn.2_Silent_p.L736L|NLRP2_uc010eso.2_Silent_p.L757L|NLRP2_uc010esp.2_Silent_p.L738L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	760					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TGTAACGTATCTGACCCTTCA	0.458													14	69					0	0	0.119110	0	0
U2AF2	11338	broad.mit.edu	37	19	56180459	56180459	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:56180459G>T	uc002qlu.2	+	10	2011	c.956G>T	c.(955-957)GGG>GTG	p.G319V	U2AF2_uc002qlt.2_Missense_Mutation_p.G319V	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	319	RRM 2.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		GCCATTGCGGGGCTGAACGGC	0.662													9	31					0.00621372	0.00635558	0.058154	1	0
AGBL5	60509	broad.mit.edu	37	2	27276285	27276285	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:27276285C>T	uc002rie.2	+	3	448	c.231C>T	c.(229-231)TTC>TTT	p.F77F	AGBL5_uc002ric.2_Silent_p.F77F|AGBL5_uc002rid.2_Silent_p.F77F|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	77					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTTCTACTTCAGCGTCCGGG	0.522													34	97					0	0	0.045705	0	0
Unknown	0	broad.mit.edu	37	2	89247277	89247277	+	RNA	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:89247277G>A	uc010ytr.1	-	100		c.7907C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGAGCTGAGCGGGGACCCTCA	0.552													74	150					0	0	0.139131	0	0
FER1L5	90342	broad.mit.edu	37	2	97369333	97369333	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:97369333C>T	uc010fia.2	+	50	5873	c.5873C>T	c.(5872-5874)TCG>TTG	p.S1958L	FER1L5_uc002sws.3_Missense_Mutation_p.S667L|FER1L5_uc002swt.3_Missense_Mutation_p.S667L|FER1L5_uc010yus.1_Missense_Mutation_p.S666L	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1958						integral to membrane				ovary(1)	1						CGAGGCCAGTCGGAACCCAAC	0.567													13	75					0	0	0.105934	0	0
ZC3H8	84524	broad.mit.edu	37	2	112995977	112995977	+	Silent	SNP	T	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:112995977T>C	uc002thp.2	-	3	391	c.285A>G	c.(283-285)CAA>CAG	p.Q95Q		NM_032494	NP_115883	Q8N5P1	ZC3H8_HUMAN	zinc finger CCCH-type containing 8	95					apoptosis|negative regulation of T cell differentiation in thymus|negative regulation of transcription, DNA-dependent|positive regulation of thymocyte apoptosis|response to antibiotic|T cell homeostasis	nucleus	RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTATGTACTGTTGAAGCTCTT	0.378													33	138					0	0	0.054565	0	0
CKAP2L	150468	broad.mit.edu	37	2	113496492	113496492	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:113496492C>T	uc002tie.2	-	9	2225	c.2146G>A	c.(2146-2148)GAA>AAA	p.E716K	CKAP2L_uc002tif.2_Missense_Mutation_p.E305K|CKAP2L_uc010yxp.1_Missense_Mutation_p.E551K|uc002tid.2_Intron	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	716						centrosome					0						TCTAACAGTTCATCAAGAGAA	0.438													77	117					0	0	0.139131	0	0
TFCP2L1	29842	broad.mit.edu	37	2	121995282	121995282	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:121995282G>A	uc002tmx.2	-	10	1013	c.920C>T	c.(919-921)CCA>CTA	p.P307L	TFCP2L1_uc010flr.2_Missense_Mutation_p.P307L	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	307					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CGAAGCTGATGGGAGCAGGTG	0.602													42	75					0	0	0.098360	0	0
UBR3	130507	broad.mit.edu	37	2	170930076	170930076	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:170930076G>A	uc010zdi.1	+	36	5158	c.5158G>A	c.(5158-5160)GAG>AAG	p.E1720K	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Missense_Mutation_p.E541K|UBR3_uc002uft.3_Missense_Mutation_p.E577K|UBR3_uc010zdj.1_Missense_Mutation_p.E411K|UBR3_uc002ufu.3_Missense_Mutation_p.E226K	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1720					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						GTGGTGTTTTGAGATAAAATC	0.388													24	105					0	0	0.083992	0	0
MOGAT1	116255	broad.mit.edu	37	2	223553201	223553201	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:223553201G>T	uc010fws.1	+	2	281	c.233G>T	c.(232-234)TGG>TTG	p.W78L	MOGAT1_uc010fwt.1_Missense_Mutation_p.W38L	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	78					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		ATCAAAAATTGGACTCTTTGG	0.368													5	38					0.00198382	0.00204781	0.029380	1	0
ZNF343	79175	broad.mit.edu	37	20	2474595	2474595	+	Translation_Start_Site	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr20:2474595G>C	uc002wge.1	-	3	435	c.-53C>G	c.(-55--51)ATCTA>ATGTA		ZNF343_uc010gao.1_Translation_Start_Site|ZNF343_uc002wgd.1_5'Flank	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GGTCCAGGTAGATGTTATTTC	0.488													25	84					0	0	0.076483	0	0
STX16	8675	broad.mit.edu	37	20	57244413	57244413	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr20:57244413G>C	uc002xzi.2	+	5	1195	c.460G>C	c.(460-462)GAG>CAG	p.E154Q	STX16_uc010zzq.1_Intron|STX16_uc002xzk.2_Missense_Mutation_p.E137Q|STX16_uc002xzm.2_Missense_Mutation_p.E150Q|STX16_uc002xzj.2_Missense_Mutation_p.E133Q|STX16_uc002xzl.2_Intron	NM_001001433	NP_001001433	O14662	STX16_HUMAN	syntaxin 16 isoform a	154	Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|microsome|SNARE complex	SNAP receptor activity			ovary(1)	1	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;3.73e-09)|Epithelial(14;8.54e-06)|all cancers(14;6.89e-05)			CTCCGAGCAGGAGGGGCGGCT	0.682													13	24					0	0	0.076483	0	0
OSBPL2	9885	broad.mit.edu	37	20	60856904	60856904	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr20:60856904C>G	uc002yck.1	+	9	1043	c.841C>G	c.(841-843)CAC>GAC	p.H281D	OSBPL2_uc002ycl.1_Missense_Mutation_p.H269D|OSBPL2_uc011aah.1_Missense_Mutation_p.H189D|OSBPL2_uc002ycm.1_Missense_Mutation_p.H93D	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	281					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			AAAAGAACTTCACAAGGTGGA	0.453													25	69					0	0	0.116897	0	0
DIDO1	11083	broad.mit.edu	37	20	61542823	61542823	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr20:61542823G>A	uc002ydr.1	-	3	406	c.142C>T	c.(142-144)CTG>TTG	p.L48L	DIDO1_uc002yds.1_Silent_p.L48L|DIDO1_uc002ydt.1_Silent_p.L48L|DIDO1_uc002ydu.1_Silent_p.L48L|DIDO1_uc002ydv.1_Silent_p.L48L|DIDO1_uc002ydw.1_Silent_p.L48L|DIDO1_uc002ydx.1_Silent_p.L48L|DIDO1_uc011aao.1_Silent_p.L48L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	48					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGCGGCTCCAGTGGGTCAGCC	0.647													6	26					0	0	0.029380	0	0
PRIC285	85441	broad.mit.edu	37	20	62195546	62195546	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr20:62195546G>A	uc002yfm.2	-	9	5521	c.4629C>T	c.(4627-4629)AGC>AGT	p.S1543S	PRIC285_uc002yfl.1_Silent_p.S974S	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1543					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GCGTGCACTCGCTGCCCACCA	0.652													21	24					0	0	0.055883	0	0
NRIP1	8204	broad.mit.edu	37	21	16337230	16337230	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr21:16337230G>A	uc002yjx.2	-	4	3882	c.3284C>T	c.(3283-3285)TCT>TTT	p.S1095F		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	1095					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ACTTTCAGCAGATGAAGCCTC	0.408													92	193					0	0	0.139131	0	0
NRIP1	8204	broad.mit.edu	37	21	16338244	16338244	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr21:16338244G>A	uc002yjx.2	-	4	2868	c.2270C>T	c.(2269-2271)TCT>TTT	p.S757F		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	757	Repression domain 3.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ACAAGGCTCAGATTTTATTTT	0.403													44	122					0	0	0.117977	0	0
BRWD1	54014	broad.mit.edu	37	21	40587221	40587221	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr21:40587221C>T	uc002yxk.1	-	32	3866	c.3727G>A	c.(3727-3729)GAG>AAG	p.E1243K	BRWD1_uc010goc.1_5'UTR|BRWD1_uc002yxl.2_Missense_Mutation_p.E1243K|BRWD1_uc010god.1_Missense_Mutation_p.E209K	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	1243	Bromo 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				ATTACACTCTCAGGTTCGTTA	0.328													6	57					0	0	0.021553	0	0
RRP1B	23076	broad.mit.edu	37	21	45104458	45104458	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr21:45104458C>T	uc002zdk.2	+	10	1030	c.916C>T	c.(916-918)CGA>TGA	p.R306*	RRP1B_uc002zdl.2_5'Flank	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	306					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		TGTTGCTGATCGACTCCTGGA	0.483													53	84					0	0	0.139131	0	0
DIP2A	23181	broad.mit.edu	37	21	47929216	47929216	+	Silent	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr21:47929216G>C	uc002zjo.2	+	7	1014	c.831G>C	c.(829-831)CTG>CTC	p.L277L	DIP2A_uc011afy.1_Silent_p.L213L|DIP2A_uc011afz.1_Silent_p.L277L|DIP2A_uc002zjl.2_Silent_p.L277L|DIP2A_uc002zjm.2_Silent_p.L277L|DIP2A_uc010gql.2_Silent_p.L234L|DIP2A_uc002zjn.2_Silent_p.L277L|DIP2A_uc002zjp.1_Silent_p.L22L	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	277					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		AGCAGCTTCTGAACACCCTGA	0.502													56	136					0	0	0.139131	0	0
ZNF74	7625	broad.mit.edu	37	22	20760282	20760282	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr22:20760282A>G	uc010gsm.2	+	6	1171	c.959A>G	c.(958-960)AAC>AGC	p.N320S	ZNF74_uc002zsg.2_Missense_Mutation_p.N249S|ZNF74_uc002zsh.2_Missense_Mutation_p.N320S|ZNF74_uc002zsi.2_Missense_Mutation_p.N249S|ZNF74_uc010gsn.2_Missense_Mutation_p.N249S	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	320	C2H2-type 3.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			TCGTCCCTCAACGTGCACCAG	0.662													12	33					0	0	0.132662	0	0
MAPK1	5594	broad.mit.edu	37	22	22127164	22127164	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr22:22127164C>T	uc002zvn.2	-	7	1204	c.964G>A	c.(964-966)GAG>AAG	p.E322K	MAPK1_uc002zvo.2_Missense_Mutation_p.E322K|MAPK1_uc010gtk.1_Missense_Mutation_p.E278K	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	322					activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	GCTCTTACCTCGTCACTCGGG	0.478													12	39					0	0	0.080935	0	0
SEC14L3	266629	broad.mit.edu	37	22	30866217	30866217	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr22:30866217C>T	uc003ahy.2	-	3	245	c.156G>A	c.(154-156)TCG>TCA	p.S52S	SEC14L3_uc003ahz.2_5'UTR|SEC14L3_uc003aia.2_5'UTR|SEC14L3_uc003aib.2_5'UTR	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	52						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	GCAAAGCCTCCGACTTCTGCA	0.522													7	34					0	0	0.047766	0	0
RANGAP1	5905	broad.mit.edu	37	22	41652027	41652027	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr22:41652027G>A	uc003azs.2	-	9	2541	c.1071C>T	c.(1069-1071)CTC>CTT	p.L357L	RANGAP1_uc003azt.2_Silent_p.L357L|RANGAP1_uc003azu.2_Silent_p.L357L|RANGAP1_uc003azr.2_5'Flank|RANGAP1_uc010gyk.2_5'Flank|RANGAP1_uc011aoz.1_Silent_p.L302L	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	357					mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						TTCCCTACCTGAGGGACGCCA	0.453													15	46					0	0	0.038395	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719361	50719361	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr22:50719361C>T	uc003bkv.3	-	24	3911	c.3805G>A	c.(3805-3807)GAG>AAG	p.E1269K	PLXNB2_uc003bkt.1_Missense_Mutation_p.E61K|PLXNB2_uc003bku.1_Missense_Mutation_p.E254K	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1269	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ATGCCGGCCTCGTGCACGTCG	0.647													11	49					0	0	0.105934	0	0
TMEM43	79188	broad.mit.edu	37	3	14170936	14170936	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:14170936G>A	uc003byk.2	+	2	291	c.37G>A	c.(37-39)GAA>AAA	p.E13K	TMEM43_uc003byl.1_5'Flank	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	13	Nuclear (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						TACCCGGAGAGAACATGTCAA	0.403													16	29					0	0	0.055883	0	0
TMEM43	79188	broad.mit.edu	37	3	14170986	14170986	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:14170986G>A	uc003byk.2	+	2	341	c.87G>A	c.(85-87)CTG>CTA	p.L29L	TMEM43_uc003byl.1_5'Flank	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	29	Nuclear (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						TGGAACGGCTGAGCGAGACCT	0.493													13	33					0	0	0.049695	0	0
TMEM43	79188	broad.mit.edu	37	3	14170992	14170992	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:14170992G>A	uc003byk.2	+	2	347	c.93G>A	c.(91-93)GAG>GAA	p.E31E	TMEM43_uc003byl.1_5'Flank	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	31	Nuclear (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						GGCTGAGCGAGACCTCGGGTG	0.498													14	30					0	0	0.049695	0	0
DOCK3	1795	broad.mit.edu	37	3	50816135	50816135	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:50816135C>G	uc011bds.1	+	2	90	c.67C>G	c.(67-69)CAA>GAA	p.Q23E		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	23	SH3.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ATCTGTCCCTCAAGGGTTGGT	0.383													3	1					0	0	0.115264	0	0
CNTN3	5067	broad.mit.edu	37	3	74535723	74535723	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:74535723C>G	uc003dpm.1	-	3	322	c.242G>C	c.(241-243)GGA>GCA	p.G81A		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	81	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AAGATTTCCTCCATTCAACTT	0.373													10	64					0	0	0.069234	0	0
TIGIT	201633	broad.mit.edu	37	3	114014436	114014436	+	Missense_Mutation	SNP	G	A	A	rs142063959		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:114014436G>A	uc003ebg.1	+	2	140	c.106G>A	c.(106-108)GAG>AAG	p.E36K		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	36	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						CATTTCTGCAGAGAAAGGTGG	0.527													71	172					0	0	0.139131	0	0
HGD	3081	broad.mit.edu	37	3	120363243	120363243	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:120363243A>G	uc003edw.2	-	10	1067	c.697T>C	c.(697-699)TGG>CGG	p.W233R	HGD_uc003edv.2_Missense_Mutation_p.W92R	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	233					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TCCTCATACCAGGCAATGGGT	0.448													31	165					0	0	0.144211	0	0
IQCB1	9657	broad.mit.edu	37	3	121527805	121527805	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:121527805G>A	uc010hre.1	-	6	660	c.445C>T	c.(445-447)CTC>TTC	p.L149F	IQCB1_uc003eek.2_Missense_Mutation_p.L149F|IQCB1_uc010hrf.1_RNA	NM_001023570	NP_001018864	Q15051	IQCB1_HUMAN	IQ motif containing B1 isoform a	149					cilium assembly|maintenance of organ identity|photoreceptor cell maintenance	centrosome|photoreceptor connecting cilium	calmodulin binding				0				GBM - Glioblastoma multiforme(114;0.0983)		AGCCAGAAGAGAGAATCAGTC	0.323													12	40					0	0	0.146539	0	0
NCK1	4690	broad.mit.edu	37	3	136664454	136664454	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:136664454G>A	uc003erh.2	+	3	363	c.256G>A	c.(256-258)GTG>ATG	p.V86M	NCK1_uc011bme.1_Missense_Mutation_p.V22M	NM_006153	NP_006144	P16333	NCK1_HUMAN	NCK adaptor protein 1	86					axon guidance|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of translation|signal complex assembly|T cell activation|T cell receptor signaling pathway	cytosol|endoplasmic reticulum|nucleus	cytoskeletal adaptor activity|receptor binding|receptor signaling complex scaffold activity			pancreas(1)	1						AAAACCTAGTGTGCCAGATTC	0.383													9	72					0	0	0.047766	0	0
RASA2	5922	broad.mit.edu	37	3	141278739	141278739	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:141278739C>G	uc003etz.1	+	9	765	c.765C>G	c.(763-765)ATC>ATG	p.I255M	RASA2_uc010huq.1_Missense_Mutation_p.I255M|RASA2_uc003eua.1_Missense_Mutation_p.I255M|RASA2_uc011bnc.1_Translation_Start_Site	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	255	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TTTTCAGGATCGACTTGTGGA	0.373													3	51					0	0	0.014758	0	0
TSC22D2	9819	broad.mit.edu	37	3	150127938	150127938	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:150127938G>A	uc003exv.2	+	1	1151	c.801G>A	c.(799-801)CAG>CAA	p.Q267Q	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Silent_p.Q267Q	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	267							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CCCAGCCGCAGAGTTTTAGCG	0.697													5	13					0	0	0.021553	0	0
IQCG	84223	broad.mit.edu	37	3	197616500	197616500	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:197616500G>C	uc003fyo.2	-	11	1429	c.1283C>G	c.(1282-1284)TCA>TGA	p.S428*	IQCG_uc003fyn.2_Nonsense_Mutation_p.S330*|IQCG_uc003fyp.2_Nonsense_Mutation_p.S428*|IQCG_uc003fym.2_Nonsense_Mutation_p.S129*	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	428											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		TTTGCCTTTTGAATCCTTGCT	0.458													35	216					0	0	0.054565	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446457	10446457	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:10446457C>A	uc003gmn.2	-	3	1983	c.1496G>T	c.(1495-1497)GGA>GTA	p.G499V		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	499					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TGATGCAGCTCCAAGACTACG	0.373													31	38					3.62531e-18	3.86699e-18	0.069456	1	0
FRYL	285527	broad.mit.edu	37	4	48537794	48537794	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:48537794C>T	uc003gyh.1	-	48	7049	c.6444G>A	c.(6442-6444)ATG>ATA	p.M2148I	FRYL_uc003gyg.1_Missense_Mutation_p.M844I|FRYL_uc003gyi.1_Missense_Mutation_p.M1036I|FRYL_uc003gyj.1_Missense_Mutation_p.M443I	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2148					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TGTACAAACTCATCATGTGTG	0.368													10	14					0	0	0.058154	0	0
HELQ	113510	broad.mit.edu	37	4	84361036	84361036	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:84361036C>T	uc003hom.2	-	8	1967	c.1788G>A	c.(1786-1788)ATG>ATA	p.M596I	HELQ_uc010ikb.2_Missense_Mutation_p.M529I|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	596	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						ATTTGCATATCATTTCTGCTA	0.294								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					4	27					0	0	0.009096	0	0
CENPE	1062	broad.mit.edu	37	4	104035655	104035655	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:104035655C>G	uc003hxb.1	-	46	7587	c.7497G>C	c.(7495-7497)TTG>TTC	p.L2499F	CENPE_uc003hxc.1_Missense_Mutation_p.L2378F	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2499	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		GATTTTCTCTCAATAGCCTTA	0.328													12	64					0	0	0.093190	0	0
ANK2	287	broad.mit.edu	37	4	114267077	114267077	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:114267077C>T	uc003ibe.3	+	35	4370	c.4270C>T	c.(4270-4272)CCT>TCT	p.P1424S	ANK2_uc003ibd.3_Missense_Mutation_p.P1415S|ANK2_uc003ibf.3_Missense_Mutation_p.P1424S|ANK2_uc011cgc.1_Missense_Mutation_p.P600S|ANK2_uc003ibg.3_Missense_Mutation_p.P419S|ANK2_uc003ibh.3_Missense_Mutation_p.P98S|ANK2_uc011cgb.1_Missense_Mutation_p.P1439S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1391					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GACTCAGGAACCTTGCGGACG	0.408													16	86					0	0	0.033300	0	0
ADAD1	132612	broad.mit.edu	37	4	123301290	123301290	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:123301290G>C	uc003ieo.2	+	3	298	c.66G>C	c.(64-66)AAG>AAC	p.K22N	ADAD1_uc003iep.2_Missense_Mutation_p.K22N|ADAD1_uc003ieq.2_Missense_Mutation_p.K4N	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	22					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TGCTGAAAAAGAACCTGCCAG	0.483													21	38					0	0	0.069288	0	0
USP38	84640	broad.mit.edu	37	4	144106889	144106889	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:144106889C>G	uc003ijb.2	+	1	820	c.286C>G	c.(286-288)CTG>GTG	p.L96V	USP38_uc003ija.3_Missense_Mutation_p.L96V|USP38_uc003ijc.2_RNA	NM_032557	NP_115946	Q8NB14	UBP38_HUMAN	ubiquitin specific peptidase 38	96					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_hematologic(180;0.158)					CTACCACTCTCTGGACAGGAA	0.557													31	54					0	0	0.050027	0	0
FBXW7	55294	broad.mit.edu	37	4	153247245	153247245	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:153247245A>T	uc003ims.2	-	10	1706	c.1557T>A	c.(1555-1557)TAT>TAA	p.Y519*	FBXW7_uc011cii.1_Nonsense_Mutation_p.Y519*|FBXW7_uc003imt.2_Nonsense_Mutation_p.Y519*|FBXW7_uc011cih.1_Nonsense_Mutation_p.Y343*|FBXW7_uc003imq.2_Nonsense_Mutation_p.Y439*|FBXW7_uc003imr.2_Nonsense_Mutation_p.Y401*	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	519	WD 4.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.Y519D(1)|p.Y519C(1)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CCATAAAATCATATGCTCCAC	0.438			Mis|N|D|F		colorectal|endometrial|T-ALL								69	113					0	0	0.139131	0	0
FHDC1	85462	broad.mit.edu	37	4	153864414	153864414	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:153864414G>A	uc003inf.2	+	1	280	c.205G>A	c.(205-207)GAG>AAG	p.E69K		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	69					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					ACTTCCTGGGGAGCCTCCCAT	0.493													12	22					0	0	0.093190	0	0
SDHAP3	728609	broad.mit.edu	37	5	1593386	1593386	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:1593386A>C	uc010itg.1	-	2	151	c.74T>G	c.(73-75)GTG>GGG	p.V25G	SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA clone IMAGE:40127561.												0						CTGGCCATTCACGTGCCTCAG	0.597													3	92					0	0	0.014758	0	0
SLC45A2	51151	broad.mit.edu	37	5	33947294	33947294	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:33947294C>T	uc003jid.2	-	6	1434	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K	SLC45A2_uc003jie.2_Missense_Mutation_p.E448K	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	448	Cytoplasmic (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						CGGTGGTACTCAGTAATGAGG	0.512													7	310					0	0	0.029380	0	0
GPBP1	65056	broad.mit.edu	37	5	56531814	56531814	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:56531814G>C	uc003jrh.3	+	6	1707	c.433G>C	c.(433-435)GAG>CAG	p.E145Q	GPBP1_uc010iwg.2_Missense_Mutation_p.E145Q|GPBP1_uc003jri.3_5'UTR|GPBP1_uc003jrj.3_Missense_Mutation_p.E152Q|GPBP1_uc003jrk.3_Missense_Mutation_p.E152Q|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		TCCTGAGTATGAGAGAGAACC	0.313													8	96					0	0	0.080935	0	0
AP3B1	8546	broad.mit.edu	37	5	77524005	77524005	+	Missense_Mutation	SNP	G	T	T	rs62001053		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:77524005G>T	uc003kfj.2	-	4	463	c.338C>A	c.(337-339)GCA>GAA	p.A113E		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	113					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		GGACAGGAGTGCAAGATCCTG	0.353									Hermansky-Pudlak_syndrome				7	41					0.00307968	0.00316444	0.038147	1	0
PCDHAC1	56135	broad.mit.edu	37	5	140306841	140306841	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:140306841C>A	uc003lih.2	+	1	540	c.364C>A	c.(364-366)CCT>ACT	p.P122T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.P122T	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	122	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACAACTCACCTCTCTTTCC	0.607													16	87					7.07596e-05	7.33803e-05	0.038395	1	0
RNF14	9604	broad.mit.edu	37	5	141353154	141353154	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:141353154A>G	uc003lly.2	+	2	40	c.1A>G	c.(1-3)ATG>GTG	p.M1V	RNF14_uc003llz.2_Missense_Mutation_p.M1V|RNF14_uc003lma.2_Missense_Mutation_p.M1V|RNF14_uc003lmb.2_5'UTR|RNF14_uc003lmc.2_Missense_Mutation_p.M1V|RNF14_uc011dbg.1_Missense_Mutation_p.M1V|RNF14_uc011dbh.1_Missense_Mutation_p.M1V|RNF14_uc003lmd.2_Missense_Mutation_p.M1V	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	1					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		TCAGGTCCTTATGTCGTCAGA	0.323													3	88					0	0	0.009096	0	0
PDGFRB	5159	broad.mit.edu	37	5	149506138	149506138	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:149506138G>A	uc003lro.2	-	11	2088	c.1619C>T	c.(1618-1620)GCC>GTC	p.A540V	PDGFRB_uc010jhd.2_Missense_Mutation_p.A379V	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	540	Helical; (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CACCACCAGGGCCAGGATGGC	0.572			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								12	56					0	0	0.105934	0	0
SYNPO	11346	broad.mit.edu	37	5	150028172	150028172	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:150028172C>G	uc003lsn.2	+	3	1441	c.1067C>G	c.(1066-1068)TCT>TGT	p.S356C	SYNPO_uc003lso.3_Missense_Mutation_p.S112C|SYNPO_uc003lsp.2_Missense_Mutation_p.S112C	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	356					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGCCACTTTCTAGCATCCAA	0.567													73	170					0	0	0.139131	0	0
LARP1	23367	broad.mit.edu	37	5	154092620	154092620	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:154092620G>A	uc003lvo.2	+	1	159	c.135G>A	c.(133-135)CCG>CCA	p.P45P		NM_015315	NP_056130	Q6PKG0	LARP1_HUMAN	la related protein isoform 1	122							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CAGCTGCCCCGAGGAAGGAGC	0.597													28	40					0	0	0.116897	0	0
SGCD	6444	broad.mit.edu	37	5	155771677	155771677	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:155771677A>C	uc003lwd.3	+	2	655	c.179A>C	c.(178-180)AAC>ACC	p.N60T	SGCD_uc003lwa.1_Missense_Mutation_p.N61T|SGCD_uc003lwb.2_Missense_Mutation_p.N61T|SGCD_uc003lwc.3_Missense_Mutation_p.N61T	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	60	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAAGTCATGAACTTCACAATT	0.423													15	86					0	0	0.132662	0	0
IL12B	3593	broad.mit.edu	37	5	158745773	158745773	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:158745773G>C	uc003lxr.1	-	6	868	c.826C>G	c.(826-828)CAG>GAG	p.Q276E		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	276	Fibronectin type-III.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCCTGGACCTGAACGCAGAAT	0.493													7	109					0	0	0.038147	0	0
ZNF184	7738	broad.mit.edu	37	6	27420477	27420477	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr6:27420477G>A	uc003njj.2	-	5	1672	c.861C>T	c.(859-861)TTC>TTT	p.F287F	ZNF184_uc010jqv.2_Silent_p.F287F|ZNF184_uc003nji.2_Silent_p.F287F	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	287	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GACCCTCAATGAAGCCTTTTC	0.378													43	81					0	0	0.098360	0	0
ECT2L	345930	broad.mit.edu	37	6	139206714	139206714	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr6:139206714G>A	uc003qif.1	+	15	2203	c.2100G>A	c.(2098-2100)CTG>CTA	p.L700L	ECT2L_uc011edq.1_Intron	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	700	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						CCAAAATGCTGAGGTACGTTC	0.493													26	67					0	0	0.083992	0	0
NOX3	50508	broad.mit.edu	37	6	155764498	155764498	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr6:155764498G>C	uc003qqm.2	-	5	498	c.395C>G	c.(394-396)TCC>TGC	p.S132C		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	132	Ferric oxidoreductase.|Extracellular (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		GGCCTCCTCGGACTGGCTCCA	0.577													13	41					0	0	0.105934	0	0
NOX3	50508	broad.mit.edu	37	6	155764527	155764527	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr6:155764527G>A	uc003qqm.2	-	5	469	c.366C>T	c.(364-366)TTC>TTT	p.F122F		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	122	Ferric oxidoreductase.|Helical; (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		GTTCCAGGTTGAAGAAATGCG	0.537													8	41					0	0	0.047766	0	0
CARD11	84433	broad.mit.edu	37	7	2972191	2972191	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:2972191C>T	uc003smv.2	-	11	1952	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	516					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ATGTTCGCTTCAGGCTGATGG	0.493			Mis		DLBCL								7	12					0	0	0.029380	0	0
IKZF1	10320	broad.mit.edu	37	7	50468081	50468081	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:50468081G>A	uc003tow.3	+	9	1484	c.1316G>A	c.(1315-1317)CGC>CAC	p.R439H	IKZF1_uc003tox.3_Missense_Mutation_p.R397H|IKZF1_uc003toy.3_Missense_Mutation_p.R397H|IKZF1_uc011kck.1_Missense_Mutation_p.R352H|IKZF1_uc003toz.3_Missense_Mutation_p.R409H|IKZF1_uc010kyx.2_Missense_Mutation_p.R179H|IKZF1_uc003tpa.3_Missense_Mutation_p.R181H	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	439					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GACCTGCTGCGCGCCGCCTCC	0.672			D		ALL								10	36					0	0	0.058154	0	0
ZNF117	51351	broad.mit.edu	37	7	64452419	64452419	+	5'Flank	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:64452419G>C	uc003ttr.2	-						ZNF117_uc011kdr.1_Nonsense_Mutation_p.S326*	NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				gctctgacttgatggtgcagg	0													14	47					0	0	0.119110	0	0
SEMA3A	10371	broad.mit.edu	37	7	83640567	83640567	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:83640567A>G	uc003uhz.2	-	8	1172	c.857T>C	c.(856-858)TTC>TCC	p.F286S		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	286	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						AGCTTTGAGGAATGTTGTCCA	0.393													20	34					0	0	0.062417	0	0
PON3	5446	broad.mit.edu	37	7	95001611	95001611	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:95001611C>T	uc003unt.2	-	4	266	c.241G>A	c.(241-243)GAA>AAA	p.E81K	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.E129K	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	81					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			TTTCCTGGTTCATCTGGCGCA	0.353													38	82					0	0	0.069456	0	0
GRM8	2918	broad.mit.edu	37	7	126542611	126542611	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:126542611T>C	uc003vlr.2	-	5	1452	c.1141A>G	c.(1141-1143)ATA>GTA	p.I381V	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.I381V|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.I102V	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	381	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CATTTCTTTATATGACTGTTC	0.358										HNSCC(24;0.065)			23	42					0	0	0.091800	0	0
UBE2H	7328	broad.mit.edu	37	7	129474842	129474842	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr7:129474842C>T	uc003vpf.1	-	7	881	c.487G>A	c.(487-489)GAC>AAC	p.D163N	UBE2H_uc003vpg.1_Missense_Mutation_p.D132N|uc003vpe.2_5'Flank	NM_003344	NP_003335	P62256	UBE2H_HUMAN	ubiquitin-conjugating enzyme E2H isoform 1	163					protein K11-linked ubiquitination|protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process		ATP binding|ubiquitin-protein ligase activity			skin(1)	1	Melanoma(18;0.0435)					GATGAGCTGTCCCCGGTACCC	0.507													23	108					0	0	0.099896	0	0
FBXO25	26260	broad.mit.edu	37	8	400077	400077	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:400077C>G	uc003wox.2	+	6	735	c.469C>G	c.(469-471)CAA>GAA	p.Q157E	FBXO25_uc003woy.2_Missense_Mutation_p.Q157E|FBXO25_uc003woz.2_Missense_Mutation_p.Q90E|FBXO25_uc003wpa.2_5'UTR	NM_183421	NP_904357	Q8TCJ0	FBX25_HUMAN	F-box only protein 25 isoform 1	157						nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			lung(1)	1		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		TAAAATCGTTCAAAAGGGTAA	0.338													19	86					0	0	0.038395	0	0
KIAA1967	57805	broad.mit.edu	37	8	22470619	22470619	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:22470619G>A	uc003xch.2	+	8	811	c.674G>A	c.(673-675)CGG>CAG	p.R225Q	KIAA1967_uc003xci.2_Missense_Mutation_p.R225Q|KIAA1967_uc003xcj.1_5'UTR	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	225					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCTCCTTACCGGGTCCACCTC	0.537													19	38					0	0	0.043863	0	0
CDCA2	157313	broad.mit.edu	37	8	25319603	25319603	+	Missense_Mutation	SNP	G	A	A	rs149260399		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:25319603G>A	uc003xep.1	+	4	745	c.266G>A	c.(265-267)CGA>CAA	p.R89Q	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.R89Q|CDCA2_uc003xeq.1_Missense_Mutation_p.R74Q	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	89					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AAATGTAGACGACGTTCTGCA	0.403													29	60					0	0	0.050027	0	0
SDCBP	6386	broad.mit.edu	37	8	59493158	59493158	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:59493158T>C	uc003xtn.2	+	8	983	c.833T>C	c.(832-834)ATT>ACT	p.I278T	SDCBP_uc003xto.2_Missense_Mutation_p.I277T|SDCBP_uc003xtr.2_Missense_Mutation_p.I277T|SDCBP_uc003xtp.2_Missense_Mutation_p.I272T|SDCBP_uc003xtq.2_Missense_Mutation_p.I278T|SDCBP_uc003xts.2_Missense_Mutation_p.I284T|SDCBP_uc011led.1_Missense_Mutation_p.I219T	NM_005625	NP_005616	O00560	SDCB1_HUMAN	syntenin isoform 1	278					actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding				0		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				TTTGAACATATTATTAAGCGG	0.333													22	34					0	0	0.076483	0	0
PAG1	55824	broad.mit.edu	37	8	81892678	81892678	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:81892678C>T	uc003ybz.2	-	8	1639	c.928G>A	c.(928-930)GAA>AAA	p.E310K		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	310	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			ACCTCTTCTTCTGTGAGAGTG	0.378													28	43					0	0	0.125774	0	0
PLEC	5339	broad.mit.edu	37	8	144992837	144992837	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr8:144992837C>T	uc003zaf.1	-	32	11733	c.11563G>A	c.(11563-11565)GAG>AAG	p.E3855K	PLEC_uc003zab.1_Missense_Mutation_p.E3718K|PLEC_uc003zac.1_Missense_Mutation_p.E3722K|PLEC_uc003zad.2_Missense_Mutation_p.E3718K|PLEC_uc003zae.1_Missense_Mutation_p.E3686K|PLEC_uc003zag.1_Missense_Mutation_p.E3696K|PLEC_uc003zah.2_Missense_Mutation_p.E3704K|PLEC_uc003zaj.2_Missense_Mutation_p.E3745K	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3855	Globular 2.|Plectin 17.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGGGCCACCTCGGCACTCAGC	0.652													31	57					0	0	0.064281	0	0
SUGT1P1	441394	broad.mit.edu	37	9	33509163	33509163	+	RNA	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:33509163G>C	uc010mjq.1	-	3		c.495C>G				NR_003667				Homo sapiens suppressor of G2 allele of SKP1 pseudogene (S. cerevisiae) (SUGT1P), non-coding RNA.												0						TATTTGGATTGAATTCGCGAG	0.299													7	23					0	0	0.029380	0	0
CEP78	84131	broad.mit.edu	37	9	80855103	80855103	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:80855103C>T	uc004akx.2	+	2	694	c.418C>T	c.(418-420)CTA>TTA	p.L140L	CEP78_uc004aky.3_Silent_p.L140L|CEP78_uc010mpp.2_Silent_p.L140L|CEP78_uc011lsp.1_Silent_p.L53L	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	140					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						TTTAACTATTCTAGCAAAGGT	0.353													21	36					0	0	0.055883	0	0
ZFP37	7539	broad.mit.edu	37	9	115806340	115806340	+	Silent	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:115806340C>T	uc004bgm.1	-	4	586	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q	ZFP37_uc011lwz.1_Silent_p.Q201Q|ZFP37_uc011lxa.1_Silent_p.Q187Q	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	186						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AATCTAAATTCTGTTTCAAAA	0.318													46	116					0	0	0.111260	0	0
URM1	81605	broad.mit.edu	37	9	131150142	131150142	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:131150142G>C	uc004buv.2	+	3	216	c.154G>C	c.(154-156)GAG>CAG	p.E52Q	URM1_uc011may.1_Missense_Mutation_p.E52Q|URM1_uc004buw.2_RNA	NM_030914	NP_112176	Q9BTM9	URM1_HUMAN	ubiquitin related modifier 1 homolog isoform a	52					tRNA thio-modification|tRNA wobble uridine modification		protein binding				0						TTTGCTAAAAGAGCGGCCAGA	0.537													46	91					0	0	0.139131	0	0
SPTAN1	6709	broad.mit.edu	37	9	131344825	131344825	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:131344825G>A	uc004bvl.3	+	13	1753	c.1640G>A	c.(1639-1641)CGC>CAC	p.R547H	SPTAN1_uc011mbg.1_Missense_Mutation_p.R547H|SPTAN1_uc011mbh.1_Missense_Mutation_p.R559H|SPTAN1_uc004bvm.3_Missense_Mutation_p.R547H|SPTAN1_uc004bvn.3_Missense_Mutation_p.R547H	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	547	Spectrin 6.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						GTGGCCACTCGCCGAGATGCT	0.408													15	82					0	0	0.033300	0	0
LCN10	414332	broad.mit.edu	37	9	139637353	139637353	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:139637353C>T	uc010nbq.2	-	1	62	c.3G>A	c.(1-3)ATG>ATA	p.M1I	LCN10_uc004civ.2_Missense_Mutation_p.M1I|LCN10_uc011med.1_RNA|LCN10_uc011mee.1_Missense_Mutation_p.M1I|LCN10_uc011mef.1_RNA|LCN10_uc004ciw.2_RNA			Q6JVE6	LCN10_HUMAN	SubName: Full=LCN10 protein;	1					transport	extracellular region	binding			large_intestine(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.32e-06)|Epithelial(140;7.83e-05)		gcccctgcctcatcttcaccc	0.423													15	14					0	0	0.062417	0	0
Unknown	0	broad.mit.edu	37	MT	12731	12731	+	RNA	SNP	T	C	C			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrM:12731T>C	uc004cox.3	+	1		c.395T>C			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ACTAATCTTAGTTACCGCTAA	0.388													2	0					0	0	0.115264	0	0
SHROOM2	357	broad.mit.edu	37	X	9900723	9900723	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:9900723C>A	uc004csu.1	+	6	3490	c.3400C>A	c.(3400-3402)CGT>AGT	p.R1134S	SHROOM2_uc004csv.2_5'UTR|SHROOM2_uc011mic.1_5'UTR|SHROOM2_uc004csw.1_5'UTR	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1134					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				TGTCTGTGAGCGTGGAAGCCA	0.652													13	93					9.31168e-06	9.7468e-06	0.105934	1	0
ARHGAP6	395	broad.mit.edu	37	X	11187767	11187767	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:11187767G>T	uc004cup.1	-	9	2540	c.1667C>A	c.(1666-1668)ACC>AAC	p.T556N	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.T556N|ARHGAP6_uc004cum.1_Missense_Mutation_p.T353N|ARHGAP6_uc004cun.1_Missense_Mutation_p.T376N|ARHGAP6_uc010neb.1_Missense_Mutation_p.T378N|ARHGAP6_uc011mif.1_Missense_Mutation_p.T353N	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	556	Rho-GAP.				actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						TCCAAATATGGTGGCTAAGTT	0.453													24	114					2.21704e-12	2.35363e-12	0.076483	1	0
BEND2	139105	broad.mit.edu	37	X	18183227	18183227	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:18183227C>G	uc004cyj.3	-	14	2456	c.2302G>C	c.(2302-2304)GCT>CCT	p.A768P		NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	768										ovary(3)|kidney(1)|central_nervous_system(1)	5						CTGGCTTCAGCCCTTCTGACG	0.552													13	306					0	0	0.132662	0	0
RGAG4	340526	broad.mit.edu	37	X	71350359	71350359	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:71350359G>A	uc010nlh.1	-	1	1393	c.1032C>T	c.(1030-1032)TAC>TAT	p.Y344Y	NHSL2_uc011mqa.1_Intron|RGAG4_uc004eaj.1_RNA	NM_001024455	NP_001019626	Q5HYW3	RGAG4_HUMAN	retrotransposon gag domain containing 4	344										ovary(2)|skin(1)	3	Renal(35;0.156)					CATCTTCACTGTAGTACTCTT	0.483													17	84					0	0	0.033300	0	0
GLRA4	441509	broad.mit.edu	37	X	102979469	102979469	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:102979469C>T	uc011mse.1	-	3	691	c.270G>A	c.(268-270)ATG>ATA	p.M90I	GLRA4_uc010nou.2_Missense_Mutation_p.M90I	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	90	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GATCCCTTACCATTGTGGTCT	0.547													17	25					0	0	0.043863	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685755	125685755	+	Silent	SNP	C	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:125685755C>A	uc004eul.2	-	1	1088	c.837G>T	c.(835-837)GCG>GCT	p.A279A		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	279	WD 3.									skin(3)|ovary(1)	4						CCAAGGACACCGCTCCCAGTT	0.632													60	62					4.09106e-26	4.40576e-26	0.139131	1	0
ACTRT1	139741	broad.mit.edu	37	X	127185830	127185830	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:127185830C>G	uc004eum.2	-	1	553	c.356G>C	c.(355-357)CGA>CCA	p.R119P		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	119						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TAGCTTTTCTCGAATTTCCCT	0.488													8	538					0	0	0.038147	0	0
RAB39B	116442	broad.mit.edu	37	X	154490502	154490502	+	Silent	SNP	G	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:154490502G>A	uc004fne.2	-	2	507	c.228C>T	c.(226-228)CGC>CGT	p.R76R		NM_171998	NP_741995	Q96DA2	RB39B_HUMAN	RAB39B, member RAS oncogene family	76					protein transport|small GTPase mediated signal transduction|synapse organization|vesicle-mediated transport	Golgi apparatus|plasma membrane	GTP binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGTAGTAGGCGCGAGTGATGG	0.428													6	291					0	0	0.021553	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945182	16945184	+	RNA	DEL	AAT	-	-	rs71803374		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:16945182_16945184delAAT	uc010ocf.1	-	4		c.973_975delATT			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TACTGATGAAAATAATAACAGAT	0.246													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	20952662	20952665	+	IGR	DEL	AAGA	-	-	rs72050492	by1000genomes	TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr1:20952662_20952665delAAGA								CDA (7264 upstream) : PINK1 (7283 downstream)																							ggaaggaaggaagaaaggaaggga	0.010													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529341	42529341	+	IGR	DEL	A	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr10:42529341delA								None (None upstream) : LOC441666 (297974 downstream)																							agttgaatacacacaacacaa	0.000													5	8	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11545949	11545951	+	In_Frame_Del	DEL	TGC	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr12:11545949_11545951delTGC	uc010shk.1	-	3	1096_1098	c.1061_1063delGCA	c.(1060-1065)AGCAAG>AAG	p.S354del		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTCGGGACTTGCTGCCTCCTTG	0.601													10	729	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	82265214	82265214	+	IGR	DEL	A	-	-	rs34280872		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr13:82265214delA								None (None upstream) : None (None downstream)																							GAGTTGTTCTAAAAAAAAAAA	0.174													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	31128275	31128275	+	IGR	DEL	T	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:31128275delT								ARHGAP11B (150466 upstream) : MTMR15 (67780 downstream)																							TTTGATAAGCTTTTTTTTTTT	0.313													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	78279107	78279108	+	IGR	INS	-	ACCCAGG	ACCCAGG			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr15:78279107_78279108insACCCAGG								LOC645752 (59919 upstream) : LOC91450 (6468 downstream)																							GCCTGCCCTGAACCCAGGACCC	0.663													10	25	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46417205	46417207	+	IGR	DEL	TCT	-	-	rs61108426		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:46417205_46417207delTCT								None (None upstream) : ANKRD26P1 (86042 downstream)																							aatggAATCATCTtcgaatggaa	0.054													2	4	---	---	---	---					
CES4	51716	broad.mit.edu	37	16	55794475	55794476	+	5'Flank	INS	-	G	G			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr16:55794475_55794476insG	uc002eik.2	+						CES4_uc010cce.2_5'Flank	NR_003276				RecName: Full=Inactive carboxylesterase 4; AltName: Full=Placental carboxylesterase 3;          Short=PCE-3; Flags: Precursor;												0						GGGGCCAGGGTGGCGCCAGGGC	0.624													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	76490463	76490463	+	5'Flank	DEL	C	-	-	rs34910684		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr17:76490463delC	uc002jvt.1	+											Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		TTGCCTGAAGCCCCCCCAGCC	0.627													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	13709273	13709274	+	IGR	INS	-	AAAG	AAAG	rs148148215	by1000genomes	TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr19:13709273_13709274insAAAG								CACNA1A (91999 upstream) : CCDC130 (133300 downstream)																							gaccctgtcaaaaaggaaggaa	0.000											OREG0025297	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	26362999	26362999	+	IGR	DEL	C	-	-	rs59974708		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:26362999delC								RAB10 (2677 upstream) : HADHA (50506 downstream)																							TTTTTTTTTTCTTTTTTACTT	0.308													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	201160031	201160034	+	IGR	DEL	CCTT	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr2:201160031_201160034delCCTT								C2orf47 (331186 upstream) : SPATS2L (10570 downstream)																							tttctccctcccttccttccttcc	0.093													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	111197863	111197864	+	IGR	DEL	CA	-	-	rs7650195		TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:111197863_111197864delCA								PVRL3 (285490 upstream) : CD96 (63062 downstream)																							CGAACAGCCTcacacacacaca	0.436													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	152634899	152634902	+	IGR	DEL	GGAA	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr3:152634899_152634902delGGAA								P2RY1 (79058 upstream) : RAP2B (245127 downstream)																							agggagggagggaaggaaggaagg	0.029													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	32780006	32780006	+	IGR	DEL	T	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:32780006delT								None (None upstream) : None (None downstream)																							tttctttttcttttttttttt	0.005													3	5	---	---	---	---					
C4orf21	55345	broad.mit.edu	37	4	113461126	113461127	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr4:113461126_113461127insT	uc003iau.2	-	27	6275_6276	c.6064_6065insA	c.(6064-6066)AGAfs	p.R2022fs	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Frame_Shift_Ins_p.R480fs	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	844						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AACATTCATTCTTTTTTCTGAA	0.406													17	56	---	---	---	---					
LOC644936	644936	broad.mit.edu	37	5	79596393	79596397	+	5'Flank	DEL	CACGG	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:79596393_79596397delCACGG	uc010jai.2	-							NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						tccctctccccacggtctccctctc	0.215													6	8	---	---	---	---					
PPIP5K2	23262	broad.mit.edu	37	5	102526607	102526625	+	Frame_Shift_Del	DEL	TTTAAAGCAAGTGGATGAA	-	-	rs115289997	by1000genomes	TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:102526607_102526625delTTTAAAGCAAGTGGATGAA	uc003kod.3	+	29	3936_3954	c.3417_3435delTTTAAAGCAAGTGGATGAA	c.(3415-3435)TCTTTAAAGCAAGTGGATGAAfs	p.S1139fs	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Frame_Shift_Del_p.S1118fs|PPIP5K2_uc003kof.2_Frame_Shift_Del_p.S321fs	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	1139_1145					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						ATGCCCTATCTTTAAAGCAAGTGGATGAATTTCTTGCTT	0.356													18	96	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	103090919	103090919	+	IGR	DEL	A	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr5:103090919delA								NUDT12 (192429 upstream) : None (None downstream)																							aaaggaaaggaaggaagCTAA	0.144													2	4	---	---	---	---					
KATNA1	11104	broad.mit.edu	37	6	149959854	149959854	+	5'Flank	DEL	A	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr6:149959854delA	uc003qmr.1	-						KATNA1_uc003qms.2_Intron|KATNA1_uc003qmt.2_Intron|KATNA1_uc011eed.1_5'Flank	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1						cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		TCACTCCTTTAAAAAAAACAT	0.194													2	4	---	---	---	---					
DNLZ	728489	broad.mit.edu	37	9	139257980	139257997	+	In_Frame_Del	DEL	GCCCCAGAGCCGCCGCGG	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chr9:139257980_139257997delGCCCCAGAGCCGCCGCGG	uc004chf.1	-	1	245_262	c.170_187delCCGCGGCGGCTCTGGGGC	c.(169-189)CCCGCGGCGGCTCTGGGGCGC>CGC	p.PAAALG57del	DNLZ_uc011mdv.1_RNA	NM_001080849	NP_001074318	Q5SXM8	DNLZ_HUMAN	DNL-type zinc finger	57_62							metal ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.42e-06)|Epithelial(140;3.3e-06)		GCCTCCACGCGCCCCAGAgccgccgcgggccccggccc	0.674													7	19	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	42384500	42384501	+	IGR	INS	-	A	A			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:42384500_42384501insA								CASK (602213 upstream) : PPP1R2P9 (252118 downstream)																							tttgtctcaggaaaaaaaaaaa	0.149													4	6	---	---	---	---					
RLIM	51132	broad.mit.edu	37	X	73836527	73836528	+	5'Flank	INS	-	T	T			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrX:73836527_73836528insT	uc004ebu.2	-						RLIM_uc004ebw.2_5'Flank	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting						random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ttctttctttcttttttttttt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10037863	10037863	+	IGR	DEL	C	-	-			TCGA-DS-A0VN-01A-21D-A10S-08	TCGA-DS-A0VN-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	dae06e68-c43d-468e-a526-f52e8f549873	9feea440-0b98-4652-98db-817e1bb3b066	g.chrY:10037863delC								TTTY22 (387009 upstream) : None (None downstream)																							ATCGACACTTCGAACGCACTT	0.552													4	7	---	---	---	---					
