Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF14	8764	broad.mit.edu	37	1	2493247	2493248	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:2493247_2493248GC>AT	uc001ajr.2	+	6	986_987	c.687_688GC>AT	c.(685-690)AAGCCA>AAATCA	p.P230S	TNFRSF14_uc001ajt.1_3'UTR|TNFRSF14_uc001ajs.2_Intron	NM_003820	NP_003811	Q92956	TNR14_HUMAN	tumor necrosis factor receptor superfamily,	230	Cytoplasmic (Potential).				immune response|interspecies interaction between organisms|T cell costimulation		tumor necrosis factor receptor activity			kidney(1)	1	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;1.11e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000326)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		AAAGAAGAAAGCCAAGGGGTGA	0.579			Mis|N|F		follicular lymphoma								17	726					0	0	0.004672	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938790	2938790	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:2938790C>T	uc001ajz.2	+	1	745	c.540C>T	c.(538-540)ACC>ACT	p.T180T		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	180						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		ACGCAGTCACCAAGCTCCACG	0.662													8	30					0	0	0.003080	0	0
TP73	7161	broad.mit.edu	37	1	3638599	3638599	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:3638599G>C	uc001akp.2	+	5	554	c.444G>C	c.(442-444)TTG>TTC	p.L148F	TP73_uc001akq.2_Missense_Mutation_p.L148F|TP73_uc010nzj.1_Missense_Mutation_p.L99F|TP73_uc001akr.2_Missense_Mutation_p.L99F|TP73_uc009vlk.1_Missense_Mutation_p.L99F|TP73_uc001aks.2_Missense_Mutation_p.L99F|TP73_uc010nzk.1_Missense_Mutation_p.L77F	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	148	DNA-binding (Potential).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		CCCCGCTCTTGAAGAAACTCT	0.637													21	95					0	0	0.004656	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390357	8390357	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:8390357C>G	uc001apb.2	+	4	804	c.804C>G	c.(802-804)GTC>GTG	p.V268V	SLC45A1_uc001apc.2_5'UTR	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	268	Helical; (Potential).				carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		AGCTCCGAGTCATTTACCTCT	0.642													7	89					0	0	0.001984	0	0
MFN2	9927	broad.mit.edu	37	1	12062085	12062085	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:12062085C>G	uc001atn.3	+	11	1538	c.1085C>G	c.(1084-1086)ACG>AGG	p.T362R	MFN2_uc009vni.2_Missense_Mutation_p.T362R	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	362	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		GAGCAGCACACGGTCCGGGCC	0.602													9	106					0	0	0.008291	0	0
NBPF1	55672	broad.mit.edu	37	1	16892232	16892232	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:16892232G>C	uc009vos.1	-	28	4073	c.3185C>G	c.(3184-3186)TCA>TGA	p.S1062*	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1062	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GGAAGGAGTTGAATAACATCT	0.468													18	794					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	1	21753530	21753530	+	RNA	SNP	C	T	T	rs150787415	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:21753530C>T	uc001bep.1	-	2		c.61G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		GCATGGTGGGCCTTGGTCTTC	0.468													8	68					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	1	21753550	21753550	+	RNA	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:21753550T>C	uc001bep.1	-	2		c.41A>G								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		CTTCCTCTTCTTGGTCCTTTT	0.468													6	73					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	1	21753563	21753563	+	RNA	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:21753563A>G	uc001bep.1	-	2		c.28T>C								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		GTCCTTTTTAATTCCTGCAAT	0.473													6	86					0	0	0.001168	0	0
WNT4	54361	broad.mit.edu	37	1	22456275	22456275	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:22456275C>G	uc001bfs.3	-	2	251	c.147G>C	c.(145-147)CTG>CTC	p.L49L	WNT4_uc010odt.1_5'UTR	NM_030761	NP_110388	P56705	WNT4_HUMAN	wingless-type MMTV integration site family,	49					adrenal gland development|androgen biosynthetic process|anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|dermatome development|endoderm development|epithelial to mesenchymal transition|establishment of protein localization in plasma membrane|female gonad development|female sex determination|liver development|male gonad development|mesonephric tubule development|metanephric mesenchymal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of male gonad development|negative regulation of testicular blood vessel morphogenesis|negative regulation of testosterone biosynthetic process|negative regulation of transcription, DNA-dependent|oocyte development|paramesonephric duct development|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of collagen biosynthetic process|positive regulation of cortisol biosynthetic process|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|protein palmitoylation|renal vesicle formation|smooth muscle cell differentiation|somatotropin secreting cell differentiation|tertiary branching involved in mammary gland duct morphogenesis|thyroid-stimulating hormone-secreting cell differentiation|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|extracellular space|Golgi apparatus|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|signal transducer activity|transcription corepressor activity			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;9.02e-26)|Colorectal(126;1.71e-07)|COAD - Colon adenocarcinoma(152;1.17e-05)|GBM - Glioblastoma multiforme(114;2.01e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000568)|KIRC - Kidney renal clear cell carcinoma(1967;0.00277)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		GCCTCTGGATCAGGCCCTTGA	0.622													6	125					0	0	0.001168	0	0
AIM1L	55057	broad.mit.edu	37	1	26672075	26672075	+	5'Flank	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:26672075C>G	uc001bmd.3	-						uc009vsi.1_Missense_Mutation_p.E358D	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like								sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		GGACATGGGTCTCGAGTCTGG	0.632													8	90					0	0	0.004482	0	0
EPB41	2035	broad.mit.edu	37	1	29435895	29435895	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:29435895T>C	uc001brm.1	+	17	2368	c.2361T>C	c.(2359-2361)GCT>GCC	p.A787A	EPB41_uc001brg.1_Silent_p.A564A|EPB41_uc001brh.1_Intron|EPB41_uc001bri.1_Silent_p.A698A|EPB41_uc001brj.1_Silent_p.A524A|EPB41_uc001brl.1_Silent_p.A754A|EPB41_uc009vtl.1_Silent_p.A481A|EPB41_uc009vtm.1_Silent_p.A366A|EPB41_uc009vtn.1_RNA	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	787	Carboxyl-terminal (CTD).				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		TGCTGACAGCTCAAACTATCA	0.502													33	55					0	0	0.005524	0	0
CSMD2	114784	broad.mit.edu	37	1	34190972	34190972	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:34190972G>A	uc001bxn.1	-	17	2582	c.2553C>T	c.(2551-2553)ATC>ATT	p.I851I	CSMD2_uc001bxm.1_Silent_p.I891I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	851	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCTGGAAGCCGATGTCCGAGT	0.572													4	13					0	0	0.009096	0	0
ZMYM4	9202	broad.mit.edu	37	1	35852871	35852871	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:35852871G>C	uc001byt.2	+	12	2184	c.2104G>C	c.(2104-2106)GAC>CAC	p.D702H	ZMYM4_uc009vuu.2_Missense_Mutation_p.D670H|ZMYM4_uc001byu.2_Missense_Mutation_p.D378H|ZMYM4_uc009vuv.2_Missense_Mutation_p.D441H	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	702					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGAACTTCTTGACTATAAGGT	0.373													10	12					0	0	0.006214	0	0
EIF2C3	192669	broad.mit.edu	37	1	36501846	36501846	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:36501846G>A	uc001bzp.2	+	14	2076	c.1820G>A	c.(1819-1821)GGA>GAA	p.G607E	EIF2C3_uc001bzq.2_Missense_Mutation_p.G373E	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	607	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GCTGGTGATGGAAAGAAGCCT	0.383													25	31					0	0	0.003954	0	0
GRIK3	2899	broad.mit.edu	37	1	37271717	37271717	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:37271717C>T	uc001caz.2	-	14	2437	c.2302G>A	c.(2302-2304)GGC>AGC	p.G768S	GRIK3_uc001cba.1_Missense_Mutation_p.G768S	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	768	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	ATGGGCGTGCCGATGCCGTAG	0.667													18	30					0	0	0.006122	0	0
DAB1	1600	broad.mit.edu	37	1	57489270	57489270	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:57489270G>T	uc001cys.1	-	13	1503	c.829C>A	c.(829-831)CAG>AAG	p.Q277K	DAB1_uc001cyt.1_Missense_Mutation_p.Q275K|DAB1_uc001cyq.1_Missense_Mutation_p.Q275K|DAB1_uc001cyr.1_Missense_Mutation_p.Q191K|DAB1_uc009vzw.1_Missense_Mutation_p.Q259K|DAB1_uc009vzx.1_Missense_Mutation_p.Q277K	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	310					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GGAAGGGTCTGAGATGAAGAT	0.532													23	42					3.7963e-18	4.11419e-18	0.003330	1	0
INADL	10207	broad.mit.edu	37	1	62330039	62330039	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:62330039C>G	uc001dab.2	+	20	2683	c.2569C>G	c.(2569-2571)CTG>GTG	p.L857V	INADL_uc009waf.1_Missense_Mutation_p.L857V|INADL_uc001daa.2_Missense_Mutation_p.L857V|INADL_uc001dad.3_Missense_Mutation_p.L554V|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	857					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GCATGAATTTCTGACTCCTAG	0.403													5	21					0	0	0.001984	0	0
PGM1	5236	broad.mit.edu	37	1	64114222	64114222	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:64114222G>T	uc001dbh.2	+	8	1392	c.1179G>T	c.(1177-1179)TGG>TGT	p.W393C	PGM1_uc010ooy.1_Missense_Mutation_p.W196C|PGM1_uc010ooz.1_Missense_Mutation_p.W411C	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	393					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						ATGGACTGTGGGCTGTCCTTG	0.517													12	16					4.3838e-07	4.60893e-07	0.001855	1	0
PDE4B	5142	broad.mit.edu	37	1	66838239	66838239	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:66838239G>C	uc001dcn.2	+	17	2280	c.2089G>C	c.(2089-2091)GAG>CAG	p.E697Q	PDE4B_uc009war.2_Missense_Mutation_p.E605Q|PDE4B_uc001dco.2_Missense_Mutation_p.E697Q|PDE4B_uc001dcp.2_Missense_Mutation_p.E682Q|PDE4B_uc001dcq.2_Missense_Mutation_p.E525Q|PDE4B_uc009was.2_Missense_Mutation_p.E464Q	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	697					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	GAAGGAGGGAGAGGGACACAG	0.483													7	36					0	0	0.003080	0	0
ABCA4	24	broad.mit.edu	37	1	94568695	94568695	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:94568695C>T	uc001dqh.2	-	5	550	c.446G>A	c.(445-447)AGA>AAA	p.R149K	ABCA4_uc010otn.1_Missense_Mutation_p.R149K	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	149	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCGTATTCCTCTTCCTACATA	0.393													55	83					0	0	0.003610	0	0
CD58	965	broad.mit.edu	37	1	117078713	117078713	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:117078713G>C	uc001egm.2	-	3	623	c.502C>G	c.(502-504)CGT>GGT	p.R168G	CD58_uc001egn.2_RNA|CD58_uc010owy.1_Missense_Mutation_p.R168G|CD58_uc001ego.1_Intron|CD58_uc001egp.3_Missense_Mutation_p.R168G	NM_001779	NP_001770	P19256	LFA3_HUMAN	CD58 molecule isoform 1	168	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	anchored to membrane|integral to plasma membrane	protein binding				0	Lung SC(450;0.225)	all_cancers(81;0.000363)|all_lung(203;0.000118)|all_epithelial(167;0.000149)|Lung NSC(69;0.000577)		Lung(183;0.0086)|LUSC - Lung squamous cell carcinoma(189;0.0528)|Colorectal(144;0.0775)|all cancers(265;0.109)|Epithelial(280;0.118)|COAD - Colon adenocarcinoma(174;0.121)		GTTGAGTTACGTTTACATTGC	0.343													9	5					0	0	0.004482	0	0
ADAM30	11085	broad.mit.edu	37	1	120436741	120436741	+	Missense_Mutation	SNP	A	C	C	rs61757468	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:120436741A>C	uc001eij.2	-	1	2373	c.2219T>G	c.(2218-2220)GTA>GGA	p.V740G		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	740	5 X 9 AA approximate repeats.|Cytoplasmic (Potential).|1.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TTCTTCCTGTACAGTTTTTGT	0.363													6	148					0	0	0.001855	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144879561	144879561	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:144879561A>G	uc001elw.3	-	27	4180	c.3889T>C	c.(3889-3891)TGT>CGT	p.C1297R	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.C1253R|PDE4DIP_uc001elv.3_Missense_Mutation_p.C304R	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1297					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGCTCCTCACACTCTGAAAAA	0.502			T	PDGFRB	MPD								5	53					0	0	0.001984	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473521	145473521	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:145473521G>A	uc001enq.1	+	4	1486	c.193G>A	c.(193-195)GAG>AAG	p.E65K	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	65	ANK 2.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTACCTCCTGGAGCAAGGCGC	0.682													18	34					0	0	0.007413	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858593	149858593	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858593C>T	uc001etd.2	+	1	69	c.69C>T	c.(67-69)GGC>GGT	p.G23G	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	23					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCCGCGCTGGCCTCCAGTTCC	0.657													78	686					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858608	149858608	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858608A>G	uc001etd.2	+	1	84	c.84A>G	c.(82-84)GTA>GTG	p.V28V	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	28					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			AGTTCCCGGTAGGGCGAGTGC	0.672													69	712					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858656	149858656	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858656G>C	uc001etd.2	+	1	132	c.132G>C	c.(130-132)GTG>GTC	p.V44V	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	44					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGGAGCGGGTGGGGGCCGGCG	0.711													65	871					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858662	149858662	+	Silent	SNP	C	A	A	rs143870983		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858662C>A	uc001etd.2	+	1	138	c.138C>A	c.(136-138)GCC>GCA	p.A46A	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	46					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GGGTGGGGGCCGGCGCGCCCG	0.697													54	876					1.32949e-13	1.42707e-13	0.003610	1	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858707	149858707	+	Silent	SNP	C	G	G	rs145853187		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858707C>G	uc001etd.2	+	1	183	c.183C>G	c.(181-183)GCC>GCG	p.A61A	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	61					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACCTGACCGCCGAGATCCTGG	0.672													58	807					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858710	149858710	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858710G>A	uc001etd.2	+	1	186	c.186G>A	c.(184-186)GAG>GAA	p.E62E	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	62					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			TGACCGCCGAGATCCTGGAGC	0.672													83	768					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858713	149858713	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858713C>T	uc001etd.2	+	1	189	c.189C>T	c.(187-189)ATC>ATT	p.I63I	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	63					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCGCCGAGATCCTGGAGCTGG	0.667													88	762					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858773	149858773	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858773C>T	uc001etd.2	+	1	249	c.249C>T	c.(247-249)CAC>CAT	p.H83H	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	83					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			TCCCTCGTCACCTCCAGCTGG	0.622													29	685					0	0	0.011902	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858776	149858776	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858776C>G	uc001etd.2	+	1	252	c.252C>G	c.(250-252)CTC>CTG	p.L84L	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	84					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CTCGTCACCTCCAGCTGGCCA	0.622													28	665					0	0	0.006230	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858803	149858803	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858803A>G	uc001etd.2	+	1	279	c.279A>G	c.(277-279)GAA>GAG	p.E93E	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	93					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACGACGAGGAACTGAACAAGC	0.597													18	652					0	0	0.010771	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858833	149858833	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858833C>T	uc001etd.2	+	1	309	c.309C>T	c.(307-309)ATC>ATT	p.I103I	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	103					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			AAGTCACCATCGCCCAGGGCG	0.532													29	800					0	0	0.008361	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858854	149858854	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858854T>C	uc001etd.2	+	1	330	c.330T>C	c.(328-330)CCT>CCC	p.P110P	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	110					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCGTTTTGCCTAACATCCAGG	0.517													23	913					0	0	0.004656	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858887	149858887	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149858887C>G	uc001etd.2	+	1	363	c.363C>G	c.(361-363)ACC>ACG	p.T121T	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	121					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CAAAGAAAACCGAAAGCCACA	0.478													17	852					0	0	0.010504	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859278	149859278	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859278A>G	uc001ete.2	-	1	189	c.189T>C	c.(187-189)ATT>ATC	p.I63I	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	63					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCAGCTCCAGAATTTCCGCGG	0.637													84	833					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859281	149859281	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859281T>C	uc001ete.2	-	1	186	c.186A>G	c.(184-186)GAA>GAG	p.E62E	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	62					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCTCCAGAATTTCCGCGGTCA	0.647													86	816					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859284	149859284	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859284C>G	uc001ete.2	-	1	183	c.183G>C	c.(181-183)GCG>GCC	p.A61A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	61					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCAGAATTTCCGCGGTCAGGT	0.652													75	812					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859313	149859313	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859313G>T	uc001ete.2	-	1	154	c.154C>A	c.(154-156)CTG>ATG	p.L52M	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	52					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACCGCCGCCAGGTACACCGGG	0.682													53	737					9.64103e-21	1.04685e-20	0.003610	1	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859329	149859329	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859329T>G	uc001ete.2	-	1	138	c.138A>C	c.(136-138)GCA>GCC	p.A46A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	46					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCGGGGCGCCTGCCCCGACCC	0.682													21	828					0	0	0.007291	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859335	149859335	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859335G>C	uc001ete.2	-	1	132	c.132C>G	c.(130-132)GTC>GTG	p.V44V	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	44					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGCCTGCCCCGACCCGCTCCG	0.697													34	823					0	0	0.009718	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859383	149859383	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859383C>T	uc001ete.2	-	1	84	c.84G>A	c.(82-84)GTG>GTA	p.V28V	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	28					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCACTCGCCCCACCGGGAACT	0.682													58	702					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859398	149859398	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859398A>G	uc001ete.2	-	1	69	c.69T>C	c.(67-69)GGT>GGC	p.G23G	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	23					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GGAACTGGAGACCAGCGCGGG	0.652													77	628					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859428	149859428	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:149859428A>G	uc001ete.2	-	1	39	c.39T>C	c.(37-39)GCT>GCC	p.A13A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	13					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACTTGGCCTTAGCGCGGGCCT	0.587													84	630					0	0	0.003610	0	0
TCHH	7062	broad.mit.edu	37	1	152084716	152084717	+	Missense_Mutation	DNP	TC	AG	AG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152084716_152084717TC>AG	uc001ezp.2	-	2	976_977	c.976_977GA>CT	c.(976-978)GAG>CTG	p.E326L	TCHH_uc009wne.1_Missense_Mutation_p.E326L	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	326	5 X 13 AA tandem repeats of R-R-E-Q-E-E- E-R-R-E-Q-Q-L.|1-1; approximate.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ctcgcgcctctcctgctgctcg	0.015													8	195					0	0	0.004672	0	0
FLG2	388698	broad.mit.edu	37	1	152324195	152324195	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152324195T>C	uc001ezw.3	-	3	6140	c.6067A>G	c.(6067-6069)ACT>GCT	p.T2023A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2023	Filaggrin 9.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTTCCAGTTGTCCTGGAC	0.537													12	627					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152324877	152324877	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152324877G>A	uc001ezw.3	-	3	5458	c.5385C>T	c.(5383-5385)ACC>ACT	p.T1795T	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1795	Filaggrin 7.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTTCCAGTGGTCCTGGACC	0.537													8	260					0	0	0.012319	0	0
FLG2	388698	broad.mit.edu	37	1	152327060	152327060	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152327060C>T	uc001ezw.3	-	3	3275	c.3202G>A	c.(3202-3204)GAG>AAG	p.E1068K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1068	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATCTAGACTCATATTGTCCA	0.473													134	309					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152327910	152327910	+	Silent	SNP	G	A	A	rs147486416		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152327910G>A	uc001ezw.3	-	3	2425	c.2352C>T	c.(2350-2352)GGC>GGT	p.G784G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	784	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACCCATGTTGGCCATAGCCAG	0.512													12	272					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152328222	152328222	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152328222A>G	uc001ezw.3	-	3	2113	c.2040T>C	c.(2038-2040)GGT>GGC	p.G680G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	680	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTGTCCAAAACCAGAGGATT	0.478													15	428					0	0	0.006320	0	0
FLG2	388698	broad.mit.edu	37	1	152329162	152329162	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152329162C>G	uc001ezw.3	-	3	1173	c.1100G>C	c.(1099-1101)GGA>GCA	p.G367A	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	367	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATTGTCCTCCACAGTTCTG	0.483													18	97					0	0	0.004990	0	0
LCE1C	353133	broad.mit.edu	37	1	152777599	152777599	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777599C>T	uc001fap.1	-	2	407	c.356G>A	c.(355-357)TGA>TAA	p.*119*		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	119					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGTCCACTTCAGCAGCAGCC	0.642													16	234					0	0	0.003163	0	0
LCE1C	353133	broad.mit.edu	37	1	152777628	152777628	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777628C>G	uc001fap.1	-	2	378	c.327G>C	c.(325-327)GGG>GGC	p.G109G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	109	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTGGCCACTCCCCCCGCCAC	0.657													10	197					0	0	0.007413	0	0
LCE1C	353133	broad.mit.edu	37	1	152777631	152777631	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777631C>T	uc001fap.1	-	2	375	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	108	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCCACTCCCCCCGCCACAGC	0.662													9	192					0	0	0.006214	0	0
LCE1C	353133	broad.mit.edu	37	1	152777634	152777634	+	Silent	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777634G>T	uc001fap.1	-	2	372	c.321C>A	c.(319-321)GGC>GGA	p.G107G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	107	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACTCCCCCCGCCACAGCAGC	0.662													10	182					3.35478e-16	3.61481e-16	0.003163	1	0
LCE1C	353133	broad.mit.edu	37	1	152777757	152777757	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777757T>A	uc001fap.1	-	2	249	c.198A>T	c.(196-198)GGA>GGT	p.G66G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	66	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACTGCAGCATCCCCCAGAGC	0.632													13	277					0	0	0.013537	0	0
LCE1C	353133	broad.mit.edu	37	1	152777781	152777781	+	Silent	SNP	G	T	T	rs148874685		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777781G>T	uc001fap.1	-	2	225	c.174C>A	c.(172-174)GGC>GGA	p.G58G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	58	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCCACAGCTGCCCCCAGAGC	0.552													12	268					4.36969e-10	4.63739e-10	0.001855	1	0
LCE1C	353133	broad.mit.edu	37	1	152777844	152777844	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777844G>A	uc001fap.1	-	2	162	c.111C>T	c.(109-111)TGC>TGT	p.C37C		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	37	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGACAGGAGGGcacttagggg	0.418													13	302					0	0	0.013537	0	0
LCE1C	353133	broad.mit.edu	37	1	152777905	152777905	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777905G>A	uc001fap.1	-	2	101	c.50C>T	c.(49-51)ACC>ATC	p.T17I		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	17	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			gcacttgggggtgcacttggg	0.378													11	179					0	0	0.008291	0	0
LCE1C	353133	broad.mit.edu	37	1	152777938	152777938	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152777938C>T	uc001fap.1	-	2	68	c.17G>A	c.(16-18)AGC>AAC	p.S6N		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	6					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGCTGCTGGCTCTGCTGGCA	0.368													8	193					0	0	0.003080	0	0
LCE1B	353132	broad.mit.edu	37	1	152785039	152785039	+	Silent	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152785039A>T	uc001faq.2	+	1	593	c.117A>T	c.(115-117)CCA>CCT	p.P39P		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	39	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGTGTCCTCCAGTCTCTTCCT	0.517													11	378					0	0	0.013537	0	0
LCE1B	353132	broad.mit.edu	37	1	152785120	152785120	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152785120T>A	uc001faq.2	+	1	674	c.198T>A	c.(196-198)GGT>GGA	p.G66G		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	66	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTCTGGGGGTTGCTGCAGTT	0.662													14	239					0	0	0.003163	0	0
LCE1B	353132	broad.mit.edu	37	1	152785246	152785246	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152785246A>G	uc001faq.2	+	1	800	c.324A>G	c.(322-324)GGA>GGG	p.G108G		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	108	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTGTGGAGGAGGGAGTGGCC	0.612													10	172					0	0	0.001855	0	0
LCE1B	353132	broad.mit.edu	37	1	152785278	152785278	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152785278A>G	uc001faq.2	+	1	832	c.356A>G	c.(355-357)TAA>TGA	p.*119*		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	119					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCTGCTGCTAAAGTGGATCC	0.587													17	155					0	0	0.006122	0	0
DENND4B	9909	broad.mit.edu	37	1	153907297	153907297	+	Silent	SNP	C	T	T	rs75341579	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:153907297C>T	uc001fdd.1	-	18	3113	c.2712G>A	c.(2710-2712)CAG>CAA	p.Q904Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	904	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgctgctgctgctgtt	0.458													7	104					0	0	0.003080	0	0
HCN3	57657	broad.mit.edu	37	1	155257095	155257095	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:155257095G>C	uc001fjz.1	+	7	1617	c.1609G>C	c.(1609-1611)GAG>CAG	p.E537Q	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Missense_Mutation_p.E232Q	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	537	Cytoplasmic (Potential).|cAMP.					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCGGGCCTTTGAGACTGTGGC	0.592													18	81					0	0	0.010504	0	0
ASH1L	55870	broad.mit.edu	37	1	155451271	155451271	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:155451271T>C	uc009wqq.2	-	3	1870	c.1390A>G	c.(1390-1392)ACT>GCT	p.T464A	ASH1L_uc001fkt.2_Missense_Mutation_p.T464A|ASH1L_uc009wqr.1_Missense_Mutation_p.T464A	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	464					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTTTCAAAAGTTTTGCTGGTG	0.363													25	20					0	0	0.003330	0	0
DAP3	7818	broad.mit.edu	37	1	155686908	155686908	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:155686908G>A	uc001flq.2	+	3	326	c.157G>A	c.(157-159)GAG>AAG	p.E53K	DAP3_uc001flr.2_Missense_Mutation_p.E53K|DAP3_uc001fls.2_Missense_Mutation_p.E53K|DAP3_uc010pgl.1_Intron|DAP3_uc001flt.2_Missense_Mutation_p.E53K|DAP3_uc001flu.2_Missense_Mutation_p.E53K|DAP3_uc010pgm.1_Missense_Mutation_p.E53K	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	53					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					CCGCACCAATGAGAATGACCC	0.373													16	124					0	0	0.006122	0	0
HDGF	3068	broad.mit.edu	37	1	156714017	156714017	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:156714017C>A	uc001fpy.3	-	4	749	c.427G>T	c.(427-429)GAG>TAG	p.E143*	HDGF_uc009wsd.2_Nonsense_Mutation_p.E111*|HDGF_uc001fpz.3_Nonsense_Mutation_p.E136*|HDGF_uc009wse.2_Nonsense_Mutation_p.E159*|HDGF_uc010phr.1_Nonsense_Mutation_p.E166*|HDGF_uc009wsf.2_Nonsense_Mutation_p.E111*|HDGF_uc009wsg.2_Nonsense_Mutation_p.E143*	NM_004494	NP_004485	P51858	HDGF_HUMAN	hepatoma-derived growth factor isoform a	143	Glu-rich.				cell proliferation|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	DNA binding|growth factor activity|heparin binding|nucleotide binding			lung(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)	Breast(1374;0.198)		Colorectal(1306;0.018)		TTGGCTGGCTCATCAATGACC	0.602													119	650					5.96743e-59	6.52361e-59	0.003610	1	0
OR10J5	127385	broad.mit.edu	37	1	159505612	159505612	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:159505612G>A	uc010piw.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					GCATGCTTAGGAAGAAATACA	0.428													51	44					0	0	0.003610	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161017881	161017881	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:161017881T>C	uc001fxl.2	-	12	3276	c.2930A>G	c.(2929-2931)GAA>GGA	p.E977G	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Missense_Mutation_p.E766G|ARHGAP30_uc001fxm.2_Missense_Mutation_p.E823G|ARHGAP30_uc009wtx.2_Missense_Mutation_p.E650G	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	977					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCAAGCCCTTTCTCCAGGAGT	0.582													75	74					0	0	0.003610	0	0
FMO2	2327	broad.mit.edu	37	1	171178072	171178072	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:171178072G>A	uc001ghk.1	+	9	1513	c.1396G>A	c.(1396-1398)GGA>AGA	p.G466R	FMO2_uc010pmd.1_Missense_Mutation_p.G246R	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	466					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACTCTATTTCGGACCCTGCAA	0.488													106	40					0	0	0.003610	0	0
PRG4	10216	broad.mit.edu	37	1	186276229	186276229	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276229A>G	uc001gru.3	+	7	1429	c.1378A>G	c.(1378-1380)ACA>GCA	p.T460A	PRG4_uc001grt.3_Missense_Mutation_p.T419A|PRG4_uc009wyl.2_Missense_Mutation_p.T367A|PRG4_uc009wym.2_Missense_Mutation_p.T326A|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	460	15.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CAAGGAGCCTACACCCACCAC	0.657													21	659					0	0	0.012213	0	0
TPR	7175	broad.mit.edu	37	1	186307243	186307243	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186307243G>C	uc001grv.2	-	31	4581	c.4284C>G	c.(4282-4284)GTC>GTG	p.V1428V		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1428	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TAATAGTTTTGACTTTTTCTT	0.313			T	NTRK1	papillary thyroid								5	17					0	0	0.000602	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200816344	200816344	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:200816344A>C	uc001gvl.2	+	10	1419	c.1149A>C	c.(1147-1149)GAA>GAC	p.E383D	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.E372D|CAMSAP1L1_uc001gvm.2_Intron	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	383						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GCAGTGGGGAAGGAGCTACAT	0.353													9	6					0	0	0.006214	0	0
LAMB3	3914	broad.mit.edu	37	1	209791254	209791254	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:209791254C>G	uc001hhg.2	-	19	3439	c.3049G>C	c.(3049-3051)GAG>CAG	p.E1017Q	LAMB3_uc009xco.2_Missense_Mutation_p.E1017Q|LAMB3_uc001hhh.2_Missense_Mutation_p.E1017Q	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	1017	Domain I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGCCTCACCTCAGCAACCCTG	0.542													35	48					0	0	0.004289	0	0
HIST3H2BB	128312	broad.mit.edu	37	1	228645896	228645896	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:228645896A>G	uc001hsz.2	+	1	89	c.66A>G	c.(64-66)GCA>GCG	p.A22A	HIST3H2A_uc001hsy.2_5'Flank	NM_175055	NP_778225	Q8N257	H2B3B_HUMAN	histone cluster 3, H2bb	22					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		Prostate(94;0.183)				TCACCAAGGCACAGAAGAAGG	0.577													10	200					0	0	0.010729	0	0
HIST3H2BB	128312	broad.mit.edu	37	1	228646076	228646076	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:228646076A>G	uc001hsz.2	+	1	269	c.246A>G	c.(244-246)GCA>GCG	p.A82A	HIST3H2A_uc001hsy.2_5'Flank	NM_175055	NP_778225	Q8N257	H2B3B_HUMAN	histone cluster 3, H2bb	82					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		Prostate(94;0.183)				CCCGCCTGGCACACTACAACA	0.652													9	199					0	0	0.002450	0	0
NID1	4811	broad.mit.edu	37	1	236228177	236228177	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:236228177C>G	uc001hxo.2	-	1	305	c.203G>C	c.(202-204)AGA>ACA	p.R68T	NID1_uc009xgd.2_Missense_Mutation_p.R68T|uc001hxp.1_Missense_Mutation_p.I106M	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	68					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GATGTCGGATCTGTCGTAGAA	0.587													3	5					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	1	237167691	237167691	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:237167691C>T	uc001hyk.1	-	1		c.28G>A								Homo sapiens metallothionein 1H-like protein mRNA, complete cds.																		GAGGTGAGACCGGCGTTCCCA	0.488													4	42					0	0	0.000602	0	0
OR2T3	343173	broad.mit.edu	37	1	248637256	248637256	+	Missense_Mutation	SNP	C	T	T	rs79885009	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:248637256C>T	uc001iel.1	+	1	605	c.605C>T	c.(604-606)ACG>ATG	p.T202M		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCTATAAGACGCTCATGTAC	0.507													9	50					0	0	0.004990	0	0
AKR1C2	1646	broad.mit.edu	37	10	5040936	5040936	+	Missense_Mutation	SNP	T	C	C	rs144450879		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:5040936T>C	uc010qan.1	-	5	630	c.451A>G	c.(451-453)ATG>GTG	p.M151V	AKR1E2_uc001ihl.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C2_uc009xhy.2_Missense_Mutation_p.M125V|AKR1C2_uc001ihs.2_Missense_Mutation_p.M151V|AKR1C2_uc001iht.2_Missense_Mutation_p.M151V	NM_205845	NP_995317	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	151					digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	CACTTCTCCATGGCCTGGGAA	0.463													11	118					0	0	0.013537	0	0
FBXO18	84893	broad.mit.edu	37	10	5966420	5966420	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:5966420G>T	uc001iis.2	+	17	2640	c.2545G>T	c.(2545-2547)GAG>TAG	p.E849*	FBXO18_uc001iir.2_Nonsense_Mutation_p.E775*|FBXO18_uc009xig.2_Nonsense_Mutation_p.E775*|FBXO18_uc001iit.2_Nonsense_Mutation_p.E900*	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	849					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						CAGGATTCCAGAGCTGGTGCA	0.453													6	28					3.59834e-05	3.73431e-05	0.001168	1	0
JMJD1C	221037	broad.mit.edu	37	10	65225319	65225319	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:65225319C>T	uc001jmn.2	-	1	404	c.104G>A	c.(103-105)CGA>CAA	p.R35Q	JMJD1C_uc001jmr.1_Missense_Mutation_p.R35Q|LOC84989_uc010qir.1_Missense_Mutation_p.R8C	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	35					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TCGCCAGCTTCGCCAGCCGCG	0.697													11	8					0	0	0.010729	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70967645	70967645	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:70967645C>T	uc001jpe.1	+	14	1928	c.1873C>T	c.(1873-1875)CTC>TTC	p.L625F	SUPV3L1_uc010qjd.1_Missense_Mutation_p.L494F	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	625					DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TATTAAAGACCTCATGGATCT	0.423													31	22					0	0	0.007291	0	0
CDH23	64072	broad.mit.edu	37	10	73567434	73567434	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:73567434G>C	uc001jrx.3	+	57	8847	c.8470G>C	c.(8470-8472)GTT>CTT	p.V2824L	CDH23_uc001jsg.3_Missense_Mutation_p.V584L|CDH23_uc001jsh.3_Missense_Mutation_p.V584L|CDH23_uc001jsi.3_Missense_Mutation_p.V584L	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2824	Cadherin 26.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCTCGACCTGGTTGCTGACCT	0.617													4	13					0	0	0.009096	0	0
CAMK2G	818	broad.mit.edu	37	10	75585063	75585063	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:75585063C>G	uc001jvv.1	-	14	1133	c.1009G>C	c.(1009-1011)GAG>CAG	p.E337Q	CAMK2G_uc001jvm.1_Missense_Mutation_p.E345Q|CAMK2G_uc001jvo.1_Intron|CAMK2G_uc001jvq.1_Intron|CAMK2G_uc001jvr.1_Intron|CAMK2G_uc001jvp.1_Missense_Mutation_p.E345Q|CAMK2G_uc001jvs.1_Missense_Mutation_p.E366Q|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.E323Q|CAMK2G_uc010qkv.1_Missense_Mutation_p.E64Q|CAMK2G_uc009xrp.1_Intron|CAMK2G_uc001jvw.1_Intron|CAMK2G_uc001jvx.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	356					insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					GGCGCGGGCTCTTGGGCTGGG	0.577													27	215					0	0	0.012213	0	0
MYST4	23522	broad.mit.edu	37	10	76735894	76735894	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:76735894A>G	uc001jwn.1	+	8	2292	c.1799A>G	c.(1798-1800)CAC>CGC	p.H600R	MYST4_uc001jwm.1_Intron|MYST4_uc001jwo.1_Intron|MYST4_uc001jwp.1_Intron	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	600	Poly-Ser.|Negatively regulates HAT activity.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TTTATTTCTCACTCCTCCTCC	0.428			T	CREBBP	AML								17	14					0	0	0.004990	0	0
BTAF1	9044	broad.mit.edu	37	10	93748986	93748986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:93748986C>T	uc001khr.2	+	20	2601	c.2503C>T	c.(2503-2505)CGA>TGA	p.R835*	BTAF1_uc001khs.1_Nonsense_Mutation_p.R505*|BTAF1_uc001kht.1_Nonsense_Mutation_p.R273*	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	835	HEAT 5.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGATAGTAAACGACAGCAGGT	0.383													4	21					0	0	0.009096	0	0
KIF11	3832	broad.mit.edu	37	10	94393481	94393481	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:94393481C>G	uc001kic.2	+	14	2112	c.1804C>G	c.(1804-1806)CAG>GAG	p.Q602E	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	602					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						TCATGTTTCTCAGATTTTTAA	0.323													10	13					0	0	0.006214	0	0
LGI1	9211	broad.mit.edu	37	10	95557293	95557293	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:95557293G>T	uc001kjc.3	+	8	1743	c.1407G>T	c.(1405-1407)CAG>CAT	p.Q469H	LGI1_uc010qnv.1_Missense_Mutation_p.Q421H|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	469	EAR 6.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				AGGATATTCAGAGGATGCCAT	0.423													16	7					3.41278e-10	3.6287e-10	0.004990	1	0
PLCE1	51196	broad.mit.edu	37	10	95791282	95791282	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:95791282C>A	uc001kjk.2	+	2	1113	c.479C>A	c.(478-480)TCC>TAC	p.S160Y	PLCE1_uc010qnx.1_Missense_Mutation_p.S160Y	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	160					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GACAGACCTTCCATGGGCATT	0.433													4	33					0.00909568	0.00928535	0.009096	1	0
MMS19	64210	broad.mit.edu	37	10	99229915	99229915	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:99229915T>C	uc001kns.3	-	10	1042	c.817A>G	c.(817-819)AGT>GGT	p.S273G	MMS19_uc009xvs.2_5'Flank|MMS19_uc009xvt.2_Missense_Mutation_p.S115G|MMS19_uc001knr.2_Missense_Mutation_p.S115G|MMS19_uc010qox.1_Missense_Mutation_p.S251G|MMS19_uc001knt.2_Missense_Mutation_p.S273G|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	273	HEAT 2.				chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		AACTTGGCACTCAGAACCTCA	0.468								Direct_reversal_of_damage|NER					4	14					0	0	0.009096	0	0
HPS1	3257	broad.mit.edu	37	10	100177438	100177438	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:100177438G>A	uc010qpf.1	-	20	2232	c.1986C>T	c.(1984-1986)GTC>GTT	p.V662V	PYROXD2_uc001kpc.2_5'Flank|PYROXD2_uc001kpd.2_5'Flank|PYROXD2_uc010qpe.1_5'Flank|HPS1_uc001kpi.1_Silent_p.V663V|HPS1_uc001kpj.1_Nonsense_Mutation_p.Q572*|HPS1_uc001kpk.1_Silent_p.V487V	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	662					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		CGTAGCACCTGACAGCCTCGG	0.667									Hermansky-Pudlak_syndrome				17	30					0	0	0.004007	0	0
SORCS3	22986	broad.mit.edu	37	10	106959851	106959851	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:106959851C>G	uc001kyi.1	+	15	2331	c.2104C>G	c.(2104-2106)CAG>GAG	p.Q702E	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	702	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GGAGGACTATCAGACCTGGCA	0.527													28	22					0	0	0.007291	0	0
MKI67	4288	broad.mit.edu	37	10	129914136	129914136	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:129914136G>C	uc001lke.2	-	7	731	c.536C>G	c.(535-537)ACA>AGA	p.T179R	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	179					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AACATTAGTTGTTCCCTGAGC	0.403													5	39					0	0	0.000602	0	0
LOC653544	653544	broad.mit.edu	37	10	135491047	135491047	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:135491047C>A	uc010qvi.1	+	1	769	c.658C>A	c.(658-660)CAG>AAG	p.Q220K		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	220						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCGCCCGCGCAGGCAGGCGG	0.731													25	459					9.86323e-18	1.06788e-17	0.003954	1	0
IFITM2	10581	broad.mit.edu	37	11	308198	308198	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:308198C>T	uc001lox.3	+	1	92	c.6C>T	c.(4-6)AAC>AAT	p.N2N		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	2	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCACCATGAACCACATTGTGC	0.562													16	294					0	0	0.006122	0	0
IFITM2	10581	broad.mit.edu	37	11	308203	308203	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:308203T>C	uc001lox.3	+	1	97	c.11T>C	c.(10-12)ATT>ACT	p.I4T		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	4	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATGAACCACATTGTGCAAACC	0.562													12	304					0	0	0.004007	0	0
IFITM2	10581	broad.mit.edu	37	11	308397	308397	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:308397A>C	uc001lox.3	+	1	291	c.205A>C	c.(205-207)ACC>CCC	p.T69P		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	69	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		CTTCATGAACACCTGCTGCCT	0.627													17	294					0	0	0.007413	0	0
IFITM2	10581	broad.mit.edu	37	11	309109	309109	+	Missense_Mutation	SNP	T	C	C	rs74901761		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:309109T>C	uc001lox.3	+	2	429	c.343T>C	c.(343-345)TTC>CTC	p.F115L		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	115	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TTTGGGCATCTTCATGACCAT	0.587													26	168					0	0	0.006320	0	0
IFITM1	8519	broad.mit.edu	37	11	314253	314253	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:314253A>G	uc001loy.3	+	1	263	c.83A>G	c.(82-84)CAC>CGC	p.H28R		NM_003641	NP_003632	P13164	IFM1_HUMAN	interferon induced transmembrane protein 1	28	Extracellular (Potential).				negative regulation of cell proliferation|regulation of immune response|response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding|receptor signaling protein activity				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCAACATCCACAGCGAGACC	0.582													10	173					0	0	0.008291	0	0
IFITM1	8519	broad.mit.edu	37	11	314272	314272	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:314272C>T	uc001loy.3	+	1	282	c.102C>T	c.(100-102)CCC>CCT	p.P34P		NM_003641	NP_003632	P13164	IFM1_HUMAN	interferon induced transmembrane protein 1	34	Extracellular (Potential).				negative regulation of cell proliferation|regulation of immune response|response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding|receptor signaling protein activity				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CCTCCGTGCCCGACCATGTCG	0.592													9	205					0	0	0.008291	0	0
IFITM3	10410	broad.mit.edu	37	11	319873	319873	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:319873C>T	uc001lpa.2	-	2	468	c.367G>A	c.(367-369)GTC>ATC	p.V123I	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	123	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		ACTGGGATGACGATGAGCAGA	0.587													15	164					0	0	0.004990	0	0
IFITM3	10410	broad.mit.edu	37	11	319876	319876	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:319876T>C	uc001lpa.2	-	2	465	c.364A>G	c.(364-366)ATC>GTC	p.I122V	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	122	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGGATGACGATGAGCAGAATG	0.582													16	170					0	0	0.006122	0	0
IFITM3	10410	broad.mit.edu	37	11	320799	320799	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:320799G>C	uc001lpa.2	-	1	116	c.15C>G	c.(13-15)GTC>GTG	p.V5V	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	5	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		AGAAGGTTTGGACAGTGTGAT	0.582													18	481					0	0	0.013726	0	0
PHRF1	57661	broad.mit.edu	37	11	609285	609285	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:609285G>T	uc001lqe.2	+	14	3960	c.3829G>T	c.(3829-3831)GAC>TAC	p.D1277Y	PHRF1_uc010qwc.1_Missense_Mutation_p.D1276Y|PHRF1_uc010qwd.1_Missense_Mutation_p.D1275Y|PHRF1_uc010qwe.1_Missense_Mutation_p.D1273Y|PHRF1_uc009ybz.1_Missense_Mutation_p.D1067Y|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	1277							RNA polymerase binding|zinc ion binding				0						TTTCTCAAGCGACGCCGTTTT	0.597													14	20					3.27435e-08	3.45541e-08	0.002450	1	0
CDHR5	53841	broad.mit.edu	37	11	618833	618833	+	Missense_Mutation	SNP	G	C	C	rs139058512	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:618833G>C	uc001lqj.2	-	13	1831	c.1726C>G	c.(1726-1728)CCA>GCA	p.P576A	IRF7_uc001lqh.2_5'Flank|IRF7_uc001lqi.2_5'Flank|IRF7_uc010qwh.1_5'Flank|CDHR5_uc001lqk.2_Intron|CDHR5_uc009ycc.2_Missense_Mutation_p.P410A|CDHR5_uc009ycd.2_Missense_Mutation_p.P570A|CDHR5_uc001lql.2_Missense_Mutation_p.P576A	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	576	4 X 31 AA approximate tandem repeats.|2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GAGGTTCCTGGCTCTGGGGTC	0.667													9	367					0	0	0.006214	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606411	1606411	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1606411G>A	uc001ltu.1	-	1	103	c.69C>T	c.(67-69)GGC>GGT	p.G23G	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	23						keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CGGAGCCACAGCCCCCACAGC	0.677													8	173					0	0	0.003163	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642784	1642784	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1642784G>A	uc009ycy.1	-	4	765	c.678C>T	c.(676-678)TGC>TGT	p.C226C		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	240	9 X 4 AA repeats of C-C-X-P.|6.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGTAGGGCTTGCAGCAGCTGG	0.607													32	389					0	0	0.003610	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642817	1642817	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1642817A>G	uc009ycy.1	-	4	732	c.645T>C	c.(643-645)GGT>GGC	p.G215G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	229	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ATGACCCACAACCTGAGGAGG	0.612													25	405					0	0	0.005524	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642827	1642827	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1642827G>C	uc009ycy.1	-	4	722	c.635C>G	c.(634-636)TCC>TGC	p.S212C		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	226	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACCTGAGGAGGAGCAGCAGGG	0.607													17	411					0	0	0.005524	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642880	1642880	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1642880A>G	uc009ycy.1	-	4	669	c.582T>C	c.(580-582)TCT>TCC	p.S194S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	208	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CACAGCCTGAAGAGAAGCAGC	0.632													25	389					0	0	0.003610	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643072	1643072	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1643072A>G	uc009ycy.1	-	3	477	c.390T>C	c.(388-390)TGT>TGC	p.C130C		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	144	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGGAACCCCCACAAGAGCCAT	0.662													17	412					0	0	0.007413	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651091	1651091	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1651091C>T	uc001lty.2	+	1	59	c.21C>T	c.(19-21)TCC>TCT	p.S7S		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	7						keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		gtggctgctccggaggctgtg	0.284													34	274					0	0	0.004289	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651568	1651568	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1651568C>T	uc001lty.2	+	1	536	c.498C>T	c.(496-498)TCC>TCT	p.S166S		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	166	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCTGCTGCTCCTCAGGCTGTG	0.637													15	410					0	0	0.007413	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651684	1651684	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1651684T>C	uc001lty.2	+	1	652	c.614T>C	c.(613-615)TTC>TCC	p.F205S		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	205	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGTAGCTGCTTCTCAGGCTGT	0.587													20	359					0	0	0.004656	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651760	1651760	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1651760C>T	uc001lty.2	+	1	728	c.690C>T	c.(688-690)CCC>CCT	p.P230P		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	230	8 X 4 AA repeats of C-C-X-P.|8.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCTGTGTCCCCGTGTGCTGCC	0.612													11	296					0	0	0.010729	0	0
PGAP2	27315	broad.mit.edu	37	11	3832618	3832618	+	Silent	SNP	C	G	G	rs150486631		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:3832618C>G	uc001lys.2	+	2	255	c.129C>G	c.(127-129)CTC>CTG	p.L43L	PGAP2_uc001lyl.2_Missense_Mutation_p.S33C|PGAP2_uc010qxw.1_Silent_p.L100L|PGAP2_uc010qxx.1_Intron|PGAP2_uc001lyp.3_Missense_Mutation_p.S55C|PGAP2_uc010qxy.1_Silent_p.L100L|PGAP2_uc010qxz.1_Silent_p.L100L|PGAP2_uc001lyn.3_Intron|PGAP2_uc010qya.1_RNA|PGAP2_uc001lyr.2_Silent_p.L43L|PGAP2_uc010qyb.1_Intron|PGAP2_uc001lyt.2_Intron	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	43	Helical; (Potential).				GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						GGTCCCTGCTCTTCCACTTCA	0.562													11	27					0	0	0.008291	0	0
OR51F2	119694	broad.mit.edu	37	11	4843090	4843090	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:4843090G>T	uc010qyn.1	+	1	475	c.475G>T	c.(475-477)GGG>TGG	p.G159W		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCAAGATTGGGATGAGCAT	0.463													54	41					6.3008e-33	6.86142e-33	0.003610	1	0
OR2AG2	338755	broad.mit.edu	37	11	6790190	6790190	+	5'Flank	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:6790190A>C	uc001meq.1	-							NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GAGCTCCATGATGTGTTTTTT	0.438													4	21					0	0	0.009096	0	0
AMPD3	272	broad.mit.edu	37	11	10527270	10527270	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:10527270C>T	uc001mio.1	+	15	2478	c.2143C>T	c.(2143-2145)CTG>TTG	p.L715L	AMPD3_uc010rbz.1_Silent_p.L556L|AMPD3_uc001min.1_Silent_p.L724L|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Silent_p.L722L|AMPD3_uc009yfy.2_Silent_p.L715L	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	715					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GCAAAAGTTTCTGGGACAAAA	0.378													3	4					0	0	0.000602	0	0
SAA2	6289	broad.mit.edu	37	11	18266970	18266970	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:18266970C>T	uc001mnz.3	-	4	360	c.323G>A	c.(322-324)AGA>AAA	p.R108K	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	108					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	ATTGGGGTCTCTGCCACTCCT	0.587													8	67					0	0	0.003080	0	0
SAA2	6289	broad.mit.edu	37	11	18266989	18266989	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:18266989T>C	uc001mnz.3	-	4	341	c.304A>G	c.(304-306)AAA>GAA	p.K102E	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	102					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	CTGCCCCATTTATTGGCAGCC	0.572													9	63					0	0	0.006214	0	0
ABTB2	25841	broad.mit.edu	37	11	34188821	34188821	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:34188821G>C	uc001mvl.1	-	7	1412	c.1182C>G	c.(1180-1182)CAC>CAG	p.H394Q		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	394							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				CCACAGAGATGTGTCCATGCA	0.617													4	48					0	0	0.009096	0	0
OR5D13	390142	broad.mit.edu	37	11	55541501	55541501	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:55541501C>T	uc010ril.1	+	1	588	c.588C>T	c.(586-588)ATC>ATT	p.I196I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				ACCCCTATATCAGCCAGAGGC	0.348													16	57					0	0	0.006122	0	0
OR5M3	219482	broad.mit.edu	37	11	56237382	56237382	+	Missense_Mutation	SNP	T	G	G	rs148919533	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:56237382T>G	uc010rjk.1	-	1	592	c.592A>C	c.(592-594)ATC>CTC	p.I198L		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GCAAGTATGATCATTGTATAT	0.408													8	175					0	0	0.008291	0	0
OR5M3	219482	broad.mit.edu	37	11	56237508	56237508	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:56237508C>T	uc010rjk.1	-	1	466	c.466G>A	c.(466-468)GCA>ACA	p.A156T		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AATGTTGCTGCCAGACTCGTC	0.428													14	198					0	0	0.010504	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431576	56431576	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:56431576C>T	uc010rjm.1	+	1	415	c.415C>T	c.(415-417)CAG>TAG	p.Q139*		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGTCCAAGCAGGTCTGCTT	0.527													23	145					0	0	0.002299	0	0
OR1S2	219958	broad.mit.edu	37	11	57971038	57971038	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971038T>A	uc010rkb.1	-	1	616	c.616A>T	c.(616-618)ATG>TTG	p.M206L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	206	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TCATTGATCATTGTATCTGAA	0.443													23	882					0	0	0.006320	0	0
OR1S2	219958	broad.mit.edu	37	11	57971107	57971107	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971107C>T	uc010rkb.1	-	1	547	c.547G>A	c.(547-549)GAC>AAC	p.D183N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GTGTTGTGGTCACAGAAGAGC	0.473													26	871					0	0	0.004656	0	0
OR1S2	219958	broad.mit.edu	37	11	57971203	57971203	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971203C>G	uc010rkb.1	-	1	451	c.451G>C	c.(451-453)GCC>CCC	p.A151P		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGAACCTGGCCCGCATGAAA	0.473													65	832					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971212	57971212	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971212A>G	uc010rkb.1	-	1	442	c.442T>C	c.(442-444)TTC>CTC	p.F148L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCCGCATGAAAGTTGTATAG	0.463													69	829					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971214	57971214	+	Missense_Mutation	SNP	G	A	A	rs139923248	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971214G>A	uc010rkb.1	-	1	440	c.440C>T	c.(439-441)ACT>ATT	p.T147I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGCATGAAAGTTGTATAGTT	0.463													64	836					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971420	57971420	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971420G>A	uc010rkb.1	-	1	234	c.234C>T	c.(232-234)TAC>TAT	p.Y78Y		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CAAAGGATAGGTAGGCAAGGA	0.448													40	811					0	0	0.010771	0	0
OR1S2	219958	broad.mit.edu	37	11	57971422	57971422	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971422A>T	uc010rkb.1	-	1	232	c.232T>A	c.(232-234)TAC>AAC	p.Y78N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AAGGATAGGTAGGCAAGGAAG	0.453													38	805					0	0	0.008740	0	0
OR1S2	219958	broad.mit.edu	37	11	57971447	57971447	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971447G>A	uc010rkb.1	-	1	207	c.207C>T	c.(205-207)CAC>CAT	p.H69H		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	69	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ACATGGGGGTGTGAAGGTATA	0.448													50	776					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971456	57971457	+	Missense_Mutation	DNP	TA	CG	CG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971456_57971457TA>CG	uc010rkb.1	-	1	197_198	c.197_198TA>CG	c.(196-198)ATA>ACG	p.I66T		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	66	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TGTGAAGGTATATATCCAAGCT	0.446													90	759					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971497	57971497	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971497C>T	uc010rkb.1	-	1	157	c.157G>A	c.(157-159)GTT>ATT	p.V53I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	53	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGTTCCCAACCACAGTGACC	0.463													52	815					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971509	57971510	+	Missense_Mutation	DNP	CA	GG	GG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971509_57971510CA>GG	uc010rkb.1	-	1	144_145	c.144_145TG>CC	c.(142-147)TATGTG>TACCTG	p.V49L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ACAGTGACCACATACATACTCA	0.46													54	780					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971518	57971518	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971518T>C	uc010rkb.1	-	1	136	c.136A>G	c.(136-138)AGT>GGT	p.S46G		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ACATACATACTCAGGAAAAGC	0.453													27	746					0	0	0.008740	0	0
OR1S2	219958	broad.mit.edu	37	11	57971521	57971521	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971521G>A	uc010rkb.1	-	1	133	c.133C>T	c.(133-135)CTG>TTG	p.L45L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TACATACTCAGGAAAAGCACA	0.453													39	738					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971549	57971549	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971549T>C	uc010rkb.1	-	1	105	c.105A>G	c.(103-105)GAA>GAG	p.E35E		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	35	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GGTTTTGATGTTCAGCCTGGT	0.438													23	638					0	0	0.010818	0	0
OR1S2	219958	broad.mit.edu	37	11	57971553	57971553	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971553G>T	uc010rkb.1	-	1	101	c.101C>A	c.(100-102)GCT>GAT	p.A34D		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	34	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TTGATGTTCAGCCTGGTTGGA	0.433													31	609					1.52319e-26	1.65551e-26	0.008740	1	0
OR1S2	219958	broad.mit.edu	37	11	57971558	57971558	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971558G>C	uc010rkb.1	-	1	96	c.96C>G	c.(94-96)AAC>AAG	p.N32K		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	32	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GTTCAGCCTGGTTGGAGAGTC	0.443													41	599					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971562	57971562	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971562G>A	uc010rkb.1	-	1	92	c.92C>T	c.(91-93)TCC>TTC	p.S31F		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	31	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AGCCTGGTTGGAGAGTCCCAG	0.443													31	579					0	0	0.013114	0	0
OR1S2	219958	broad.mit.edu	37	11	57971564	57971564	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971564G>A	uc010rkb.1	-	1	90	c.90C>T	c.(88-90)CTC>CTT	p.L30L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	30	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTGGTTGGAGAGTCCCAGGA	0.443													43	557					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971604	57971604	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971604T>C	uc010rkb.1	-	1	50	c.50A>G	c.(49-51)GAA>GGA	p.E17G		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GGTTTGGTTTTCTTGATGCAT	0.413													42	494					0	0	0.008740	0	0
OR1S2	219958	broad.mit.edu	37	11	57971623	57971623	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57971623T>C	uc010rkb.1	-	1	31	c.31A>G	c.(31-33)AGC>GGC	p.S11G		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ATATTTCTGCTGATCTGAAGA	0.408													18	436					0	0	0.008871	0	0
OR1S1	219959	broad.mit.edu	37	11	57982247	57982247	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982247G>A	uc010rkc.1	+	1	31	c.31G>A	c.(31-33)GGC>AGC	p.G11S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCTTCAGATCGGCAGAAATAT	0.388													18	348					0	0	0.004990	0	0
OR1S1	219959	broad.mit.edu	37	11	57982266	57982266	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982266G>A	uc010rkc.1	+	1	50	c.50G>A	c.(49-51)GGA>GAA	p.G17E		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ATGCATCAAGGAAACCAAACC	0.413													26	448					0	0	0.003954	0	0
OR1S1	219959	broad.mit.edu	37	11	57982321	57982321	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982321G>A	uc010rkc.1	+	1	105	c.105G>A	c.(103-105)GAG>GAA	p.E35E		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	35	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCAGGATGAGCATCAAAACC	0.438													51	882					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982360	57982361	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982360_57982361CC>TG	uc010rkc.1	+	1	144_145	c.144_145CC>TG	c.(142-147)TACCTG>TATGTG	p.L49V		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGGGTATGTACCTGGTCACTGT	0.45													41	868					0	0	0.004672	0	0
OR1S1	219959	broad.mit.edu	37	11	57982413	57982414	+	Missense_Mutation	DNP	CG	TA	TA	rs140365237	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982413_57982414CG>TA	uc010rkc.1	+	1	197_198	c.197_198CG>TA	c.(196-198)ACG>ATA	p.T66I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	66	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCTTGGATACGTACCTTCATA	0.446													64	880					0	0	0.004672	0	0
OR1S1	219959	broad.mit.edu	37	11	57982423	57982423	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982423T>C	uc010rkc.1	+	1	207	c.207T>C	c.(205-207)CAT>CAC	p.H69H		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	69	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CGTACCTTCATACCCCCATGT	0.443													54	887					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982448	57982448	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982448A>T	uc010rkc.1	+	1	232	c.232A>T	c.(232-234)AAT>TAT	p.N78Y		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CTTCCTTGCCAATCTATCCTT	0.448													38	878					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982450	57982450	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982450T>C	uc010rkc.1	+	1	234	c.234T>C	c.(232-234)AAT>AAC	p.N78N		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCCTTGCCAATCTATCCTTTG	0.448													39	877					0	0	0.013114	0	0
OR1S1	219959	broad.mit.edu	37	11	57982519	57982519	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982519G>C	uc010rkc.1	+	1	303	c.303G>C	c.(301-303)AAG>AAC	p.K101N		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	101	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTCAAACCAAGAGTCAATCCA	0.423													55	864					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982522	57982522	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982522T>C	uc010rkc.1	+	1	306	c.306T>C	c.(304-306)AGT>AGC	p.S102S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	102	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AAACCAAGAGTCAATCCATCT	0.423													48	855					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982597	57982597	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982597C>T	uc010rkc.1	+	1	381	c.381C>T	c.(379-381)CTC>CTT	p.L127L		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	127	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ACAATTTGCTCTTGGGGACCA	0.448													36	868					0	0	0.006999	0	0
OR1S1	219959	broad.mit.edu	37	11	57982614	57982614	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982614A>T	uc010rkc.1	+	1	398	c.398A>T	c.(397-399)TAT>TTT	p.Y133F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ACCATGGCCTATGACCACTTT	0.453													40	872					0	0	0.009718	0	0
OR1S1	219959	broad.mit.edu	37	11	57982656	57982656	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982656T>C	uc010rkc.1	+	1	440	c.440T>C	c.(439-441)ATT>ACT	p.I147T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AATTATACAATTCTCATGCGG	0.448													50	897					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982658	57982658	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982658C>T	uc010rkc.1	+	1	442	c.442C>T	c.(442-444)CTC>TTC	p.L148F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTATACAATTCTCATGCGGCC	0.448													55	897					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982667	57982667	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982667C>G	uc010rkc.1	+	1	451	c.451C>G	c.(451-453)CCC>GCC	p.P151A		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCTCATGCGGCCCAGGTTCGG	0.453													56	887					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982680	57982680	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982680T>C	uc010rkc.1	+	1	464	c.464T>C	c.(463-465)ATT>ACT	p.I155T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGGTTCGGCATTTTGCTCACA	0.468													45	884					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982699	57982699	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982699A>G	uc010rkc.1	+	1	483	c.483A>G	c.(481-483)TCA>TCG	p.S161S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CAGTCATCTCATGGTTCCTCA	0.478													25	902					0	0	0.005443	0	0
OR1S1	219959	broad.mit.edu	37	11	57982890	57982890	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982890C>T	uc010rkc.1	+	1	674	c.674C>T	c.(673-675)ACA>ATA	p.T225I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	225	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTCCCCTTTACACTCAGCTTC	0.453													18	545					0	0	0.003330	0	0
OR1S1	219959	broad.mit.edu	37	11	57982903	57982903	+	Silent	SNP	T	C	C	rs147092977	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982903T>C	uc010rkc.1	+	1	687	c.687T>C	c.(685-687)TTT>TTC	p.F229F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	229	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCAGCTTCTTTTCCTATGTCT	0.433													39	515					0	0	0.004878	0	0
OR1S1	219959	broad.mit.edu	37	11	57982934	57982934	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982934A>G	uc010rkc.1	+	1	718	c.718A>G	c.(718-720)AGA>GGA	p.R240G		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	240	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCTGTCCTGAGAGTATCTTC	0.438													20	516					0	0	0.008871	0	0
OR1S1	219959	broad.mit.edu	37	11	57982942	57982942	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982942T>A	uc010rkc.1	+	1	726	c.726T>A	c.(724-726)TCT>TCA	p.S242S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGAGAGTATCTTCCACACAGG	0.443													31	492					0	0	0.008361	0	0
OR1S1	219959	broad.mit.edu	37	11	57982994	57982994	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982994G>A	uc010rkc.1	+	1	778	c.778G>A	c.(778-780)GTT>ATT	p.V260I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCACCTGACAGTTGTATTACT	0.478													18	506					0	0	0.008871	0	0
OR1S1	219959	broad.mit.edu	37	11	57982998	57982998	+	Missense_Mutation	SNP	T	C	C	rs150282768		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:57982998T>C	uc010rkc.1	+	1	782	c.782T>C	c.(781-783)GTA>GCA	p.V261A		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	261	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CTGACAGTTGTATTACTGTTC	0.478													31	494					0	0	0.010818	0	0
OR10V1	390201	broad.mit.edu	37	11	59481178	59481178	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:59481178G>A	uc001nof.1	-	1	141	c.141C>T	c.(139-141)GTC>GTT	p.V47V		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGAACAATGACTGCAATTG	0.458													6	12					0	0	0.004482	0	0
MS4A14	84689	broad.mit.edu	37	11	60183673	60183673	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:60183673C>G	uc001npj.2	+	5	1797	c.1232C>G	c.(1231-1233)TCA>TGA	p.S411*	MS4A14_uc001npi.2_Nonsense_Mutation_p.S299*|MS4A14_uc001npn.2_Nonsense_Mutation_p.S149*|MS4A14_uc001npk.2_Nonsense_Mutation_p.S394*|MS4A14_uc001npl.2_Nonsense_Mutation_p.S149*|MS4A14_uc001npm.2_Nonsense_Mutation_p.S149*	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	411						integral to membrane	receptor activity			breast(1)	1						caagctctatcagcgcatgcc	0.199													12	36					0	0	0.013537	0	0
C11orf66	220004	broad.mit.edu	37	11	61249901	61249901	+	Splice_Site	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:61249901G>A	uc001nru.1	+	3	352	c.227_splice	c.e3+1	p.G76_splice	C11orf66_uc009ynq.1_Splice_Site_p.G76_splice	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein											ovary(1)	1						CGGCCAGGGGGTACGGTCTGT	0.622											OREG0021002	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	29					0	0	0.013537	0	0
ESRRA	2101	broad.mit.edu	37	11	64082592	64082592	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:64082592G>C	uc001nzq.1	+	6	1039	c.862G>C	c.(862-864)GAG>CAG	p.E288Q	ESRRA_uc001nzr.1_Missense_Mutation_p.E287Q|ESRRA_uc001nzs.1_Missense_Mutation_p.E288Q|ESRRA_uc009ypn.1_RNA|PRDX5_uc001nzu.2_5'Flank|PRDX5_uc001nzv.2_5'Flank|PRDX5_uc001nzw.2_5'Flank	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	288	Ligand binding domain.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						GGCCTTCGCTGAGGACTTAGT	0.657													5	52					0	0	0.000602	0	0
PYGM	5837	broad.mit.edu	37	11	64519109	64519109	+	Missense_Mutation	SNP	T	A	A	rs150622626	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:64519109T>A	uc001oax.3	-	15	2604	c.1787A>T	c.(1786-1788)AAT>ATT	p.N596I	PYGM_uc001oay.3_Missense_Mutation_p.N508I	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	596					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	AAAAAACTTATTGGGCTCCCT	0.567													29	56					0	0	0.009535	0	0
SF3B2	10992	broad.mit.edu	37	11	65822729	65822729	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:65822729G>A	uc001ogy.1	+	4	481	c.441G>A	c.(439-441)CTG>CTA	p.L147L	SF3B2_uc001ogx.1_Silent_p.L147L	NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	147	Potential.				interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						AGGAGCGGCTGAAGTTGGCTC	0.637													12	48					0	0	0.013537	0	0
NPAS4	266743	broad.mit.edu	37	11	66192531	66192531	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:66192531G>A	uc001ohx.1	+	7	2346	c.2170G>A	c.(2170-2172)GAG>AAG	p.E724K	NPAS4_uc010rpc.1_Missense_Mutation_p.E514K	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	724					transcription, DNA-dependent		DNA binding|signal transducer activity				0						AGATCCCAGTGAGGAATGGGG	0.592													18	32					0	0	0.007413	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67059647	67059647	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:67059647G>A	uc001okc.1	+	7	977	c.466G>A	c.(466-468)GAG>AAG	p.E156K	ANKRD13D_uc001okd.1_Missense_Mutation_p.E243K|ANKRD13D_uc001oke.1_Missense_Mutation_p.E156K	NM_207354	NP_997237	Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	156										ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TGTGGCCTTTGAGAGGTCGGT	0.612													10	12					0	0	0.010729	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238705	71238705	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71238705G>A	uc001oqq.1	+	1	393	c.359G>A	c.(358-360)TGC>TAC	p.C120Y		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	120	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						tgtaagccctgctgctgccag	0.055													12	233					0	0	0.006999	0	0
KRTAP5-7	440050	broad.mit.edu	37	11	71238805	71238805	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71238805T>C	uc001oqq.1	+	1	493	c.459T>C	c.(457-459)TCT>TCC	p.S153S		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	153	7 X 4 AA repeats of C-C-X-P.					keratin filament					0						gctCCCAGTCTAGCTGCTGTG	0.299													13	165					0	0	0.007413	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71277140	71277140	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71277140G>A	uc001oqt.1	+	1	532	c.507G>A	c.(505-507)CAG>CAA	p.Q169Q		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	169	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						gctgctgccagtccagctgct	0.174													33	449					0	0	0.009718	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71277197	71277197	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71277197T>C	uc001oqt.1	+	1	589	c.564T>C	c.(562-564)TGT>TGC	p.C188C		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	188	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						cctgctgctgtcagtccagct	0.209													38	356					0	0	0.003610	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293458	71293458	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293458G>A	uc001oqu.2	-	1	464	c.426C>T	c.(424-426)TGC>TGT	p.C142C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	142	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						agctggactggcagcagcagg	0.219													19	327					0	0	0.006122	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293474	71293474	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293474A>C	uc001oqu.2	-	1	448	c.410T>G	c.(409-411)TTC>TGC	p.F137C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	137	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						gcagggcttgaagcagctaga	0.194													26	301					0	0	0.004656	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293545	71293545	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293545T>C	uc001oqu.2	-	1	377	c.339A>G	c.(337-339)CAA>CAG	p.Q113Q		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	113	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						agcagctggattggcagcagc	0.095													16	361					0	0	0.007413	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293606	71293606	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293606G>C	uc001oqu.2	-	1	316	c.278C>G	c.(277-279)TCC>TGC	p.S93C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	93	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						gcctgaggaggagcagcagGG	0.284													12	404					0	0	0.013537	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293670	71293670	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293670T>C	uc001oqu.2	-	1	252	c.214A>G	c.(214-216)AGC>GGC	p.S72G		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	72	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						CCCTTGGAGCTCCCACAAGAG	0.478													28	548					0	0	0.003610	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293767	71293767	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293767A>G	uc001oqu.2	-	1	155	c.117T>C	c.(115-117)ATT>ATC	p.I39I		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	39	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						TGCAGCAGCAAATGGGCACAC	0.662													14	586					0	0	0.002450	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293769	71293769	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293769T>C	uc001oqu.2	-	1	153	c.115A>G	c.(115-117)ATT>GTT	p.I39V		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	39	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						CAGCAGCAAATGGGCACACAG	0.662													14	582					0	0	0.001855	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293848	71293848	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71293848A>G	uc001oqu.2	-	1	74	c.36T>C	c.(34-36)TCT>TCC	p.S12S		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	12						keratin filament					0						CCCCACAGCCAGAGCCACAGC	0.637													27	314					0	0	0.003271	0	0
SYTL2	54843	broad.mit.edu	37	11	85406273	85406273	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:85406273G>C	uc010rth.1	-	18	3046	c.2770C>G	c.(2770-2772)CTC>GTC	p.L924V	SYTL2_uc010rtg.1_Missense_Mutation_p.L925V|SYTL2_uc010rti.1_Missense_Mutation_p.L900V|SYTL2_uc010rtj.1_Missense_Mutation_p.L892V|SYTL2_uc001pav.2_Missense_Mutation_p.L366V|SYTL2_uc010rte.1_Missense_Mutation_p.L326V|SYTL2_uc001pax.2_Missense_Mutation_p.L366V|SYTL2_uc001paz.2_Missense_Mutation_p.L245V|SYTL2_uc001pba.2_Missense_Mutation_p.L309V|SYTL2_uc001pay.2_Missense_Mutation_p.L355V|SYTL2_uc001paw.2_Missense_Mutation_p.L326V|SYTL2_uc009yvj.2_RNA|SYTL2_uc001pbd.2_Missense_Mutation_p.L1222V|SYTL2_uc001pbb.2_Missense_Mutation_p.L1262V|SYTL2_uc001pbc.2_Missense_Mutation_p.L1246V|SYTL2_uc010rtf.1_Missense_Mutation_p.L742V	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	924					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		AGCATTCTGAGAGGCAGTGTT	0.453													23	27					0	0	0.002299	0	0
C11orf52	91894	broad.mit.edu	37	11	111796690	111796690	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:111796690G>A	uc001pmh.2	+	5	622	c.139G>A	c.(139-141)GAA>AAA	p.E47K	C11orf52_uc001pmi.2_Missense_Mutation_p.E47K	NM_080659	NP_542390	Q96A22	CK052_HUMAN	hypothetical protein LOC91894	47										ovary(1)	1		all_cancers(61;8.8e-15)|all_epithelial(67;6.27e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.63e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|all cancers(92;6.7e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		GCAGGGCCATGAAACAACAGG	0.507													7	12					0	0	0.001984	0	0
OR10G8	219869	broad.mit.edu	37	11	123900564	123900564	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900564T>A	uc001pzp.1	+	1	235	c.235T>A	c.(235-237)TTG>ATG	p.L79M		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGTGCCCAAATTGCTGATGAC	0.517													17	258					0	0	0.008871	0	0
OR10G8	219869	broad.mit.edu	37	11	123900575	123900575	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900575T>C	uc001pzp.1	+	1	246	c.246T>C	c.(244-246)ACT>ACC	p.T82T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGCTGATGACTTTGGTGTTCC	0.517													12	250					0	0	0.003163	0	0
OR10G8	219869	broad.mit.edu	37	11	123900583	123900583	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900583T>C	uc001pzp.1	+	1	254	c.254T>C	c.(253-255)TTC>TCC	p.F85S		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACTTTGGTGTTCCCAAGTGGC	0.522													18	254					0	0	0.010504	0	0
OR10G8	219869	broad.mit.edu	37	11	123900590	123900590	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900590T>C	uc001pzp.1	+	1	261	c.261T>C	c.(259-261)AGT>AGC	p.S87S		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGTTCCCAAGTGGCAGGGCTA	0.512													12	249					0	0	0.003163	0	0
OR10G8	219869	broad.mit.edu	37	11	123900635	123900635	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900635C>T	uc001pzp.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGCTCTATTTCTTTCACTTCC	0.532													16	236					0	0	0.003163	0	0
OR10G8	219869	broad.mit.edu	37	11	123900638	123900638	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900638T>C	uc001pzp.1	+	1	309	c.309T>C	c.(307-309)TTT>TTC	p.F103F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCTATTTCTTTCACTTCCTAG	0.537													17	233					0	0	0.004990	0	0
OR10G8	219869	broad.mit.edu	37	11	123900647	123900647	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900647A>G	uc001pzp.1	+	1	318	c.318A>G	c.(316-318)CTA>CTG	p.L106L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TTCACTTCCTAGGGGGCACCG	0.547													10	240					0	0	0.006214	0	0
OR10G8	219869	broad.mit.edu	37	11	123900651	123900651	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900651G>A	uc001pzp.1	+	1	322	c.322G>A	c.(322-324)GGC>AGC	p.G108S		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CTTCCTAGGGGGCACCGAGTG	0.547													12	233					0	0	0.010729	0	0
OR10G8	219869	broad.mit.edu	37	11	123900673	123900673	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900673G>C	uc001pzp.1	+	1	344	c.344G>C	c.(343-345)AGG>ACG	p.R115T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TTCCTCTACAGGGTCATGTCC	0.552													18	241					0	0	0.004990	0	0
OR10G8	219869	broad.mit.edu	37	11	123900685	123900685	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900685G>A	uc001pzp.1	+	1	356	c.356G>A	c.(355-357)TGT>TAT	p.C119Y		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GTCATGTCCTGTGATCGCTAC	0.562													15	253					0	0	0.002450	0	0
OR10G8	219869	broad.mit.edu	37	11	123900696	123900696	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900696C>T	uc001pzp.1	+	1	367	c.367C>T	c.(367-369)CTG>TTG	p.L123L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGATCGCTACCTGGCCATCAG	0.562													13	247					0	0	0.013537	0	0
OR10G8	219869	broad.mit.edu	37	11	123900727	123900727	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900727G>A	uc001pzp.1	+	1	398	c.398G>A	c.(397-399)AGC>AAC	p.S133N		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGTACACCAGCATGATGACT	0.547													20	287					0	0	0.008871	0	0
OR10G8	219869	broad.mit.edu	37	11	123900765	123900765	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900765A>G	uc001pzp.1	+	1	436	c.436A>G	c.(436-438)AGC>GGC	p.S146G		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCTGGCCACCAGCACTTGGCT	0.547													30	288					0	0	0.006320	0	0
OR10G8	219869	broad.mit.edu	37	11	123900804	123900804	+	Missense_Mutation	SNP	G	A	A	rs147374446	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900804G>A	uc001pzp.1	+	1	475	c.475G>A	c.(475-477)GCC>ACC	p.A159T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGCTGTCCAGGCCATATTGAC	0.557													31	331					0	0	0.009535	0	0
OR10G8	219869	broad.mit.edu	37	11	123900844	123900844	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900844G>A	uc001pzp.1	+	1	515	c.515G>A	c.(514-516)TGG>TAG	p.W172*		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGACCCAACTGGATCCAGCAC	0.517													15	368					0	0	0.007413	0	0
OR10G8	219869	broad.mit.edu	37	11	123900860	123900860	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900860G>C	uc001pzp.1	+	1	531	c.531G>C	c.(529-531)TTG>TTC	p.L177F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGCACTATTTGTGTGATGCAC	0.532													18	354					0	0	0.012319	0	0
OR10G8	219869	broad.mit.edu	37	11	123900910	123900911	+	Missense_Mutation	DNP	TA	AC	AC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900910_123900911TA>AC	uc001pzp.1	+	1	581_582	c.581_582TA>AC	c.(580-582)ATA>AAC	p.I194N		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACCTCAGCCATAGAGACTGTCA	0.515													18	256					0	0	0.004672	0	0
OR10G8	219869	broad.mit.edu	37	11	123900917	123900917	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123900917T>G	uc001pzp.1	+	1	588	c.588T>G	c.(586-588)ACT>ACG	p.T196T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCATAGAGACTGTCATTTTTG	0.527													12	258					0	0	0.010729	0	0
OR10G8	219869	broad.mit.edu	37	11	123901199	123901199	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123901199G>A	uc001pzp.1	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACACCCTGAGGAACAAGGAGG	0.408													11	162					0	0	0.008291	0	0
OR10G8	219869	broad.mit.edu	37	11	123901211	123901211	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123901211G>A	uc001pzp.1	+	1	882	c.882G>A	c.(880-882)GTG>GTA	p.V294V		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V294V(1)		ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACAAGGAGGTGAAGAAAGCTC	0.378													13	147					0	0	0.013537	0	0
OR10G7	390265	broad.mit.edu	37	11	123908817	123908817	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123908817G>C	uc001pzq.1	-	1	892	c.892C>G	c.(892-894)CTG>GTG	p.L298V		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGCTTCAACAGAGCTTTCTTT	0.408													6	103					0	0	0.001168	0	0
OR10G7	390265	broad.mit.edu	37	11	123908827	123908827	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123908827T>C	uc001pzq.1	-	1	882	c.882A>G	c.(880-882)GTA>GTG	p.V294V		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GAGCTTTCTTTACCTCCTTGT	0.438													25	94					0	0	0.002780	0	0
OR10G7	390265	broad.mit.edu	37	11	123908839	123908839	+	Silent	SNP	T	C	C	rs143478590		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123908839T>C	uc001pzq.1	-	1	870	c.870A>G	c.(868-870)AGA>AGG	p.R290R		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCTCCTTGTTTCTCAGGGTGT	0.463													16	106					0	0	0.003163	0	0
OR10G7	390265	broad.mit.edu	37	11	123908869	123908869	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123908869A>G	uc001pzq.1	-	1	840	c.840T>C	c.(838-840)CCT>CCC	p.P280P		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGTTGAAAAGAGGAGTCAGCG	0.483													9	106					0	0	0.008291	0	0
OR10G7	390265	broad.mit.edu	37	11	123909011	123909011	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909011C>T	uc001pzq.1	-	1	698	c.698G>A	c.(697-699)AGG>AAG	p.R233K		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGCTCTGTGCCTCCCCTCTGA	0.567													16	185					0	0	0.004007	0	0
OR10G7	390265	broad.mit.edu	37	11	123909121	123909121	+	Missense_Mutation	SNP	C	A	A	rs141478608		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909121C>A	uc001pzq.1	-	1	588	c.588G>T	c.(586-588)ATG>ATT	p.M196I		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CAAAGATGACCATCTCGTTGG	0.547													18	454					3.83957e-06	4.01426e-06	0.002780	1	0
OR10G7	390265	broad.mit.edu	37	11	123909234	123909234	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909234T>C	uc001pzq.1	-	1	475	c.475A>G	c.(475-477)ACC>GCC	p.T159A		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T159A(1)		ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GTCAATATGGTCTGGACAGCA	0.577													21	426					0	0	0.010504	0	0
OR10G7	390265	broad.mit.edu	37	11	123909353	123909353	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909353T>C	uc001pzq.1	-	1	356	c.356A>G	c.(355-357)TAT>TGT	p.Y119C		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GTAGCGATCATAGGACATGAC	0.572													16	267					0	0	0.004990	0	0
OR10G7	390265	broad.mit.edu	37	11	123909387	123909387	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909387T>C	uc001pzq.1	-	1	322	c.322A>G	c.(322-324)AGC>GGC	p.S108G		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CACTCGGTGCTCCCCAGGAAG	0.552													12	234					0	0	0.001855	0	0
OR10G7	390265	broad.mit.edu	37	11	123909400	123909400	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909400G>A	uc001pzq.1	-	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCAGGAAGTGGAAAAAATAGA	0.537													11	262					0	0	0.008291	0	0
OR10G7	390265	broad.mit.edu	37	11	123909403	123909403	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909403A>G	uc001pzq.1	-	1	306	c.306T>C	c.(304-306)TTT>TTC	p.F102F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGAAGTGGAAAAAATAGAGCT	0.532													14	261					0	0	0.001855	0	0
OR10G7	390265	broad.mit.edu	37	11	123909514	123909514	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:123909514G>C	uc001pzq.1	-	1	195	c.195C>G	c.(193-195)TCC>TCG	p.S65S		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGTCAATGAAGGACAGGTTGG	0.552													13	200					0	0	0.013537	0	0
VWF	7450	broad.mit.edu	37	12	6153464	6153464	+	Missense_Mutation	SNP	G	A	A	rs137990643	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:6153464G>A	uc001qnn.1	-	18	2685	c.2435C>T	c.(2434-2436)CCG>CTG	p.P812L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	812	E1.|TIL 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CACCATGCCCGGGGGGCAGAG	0.592													15	16					0	0	0.003163	0	0
TAS2R14	50840	broad.mit.edu	37	12	11091555	11091555	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11091555C>T	uc010shi.1	-	1	252	c.252G>A	c.(250-252)ATG>ATA	p.M84I	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_023922	NP_076411	Q9NYV8	T2R14_HUMAN	taste receptor, type 2, member 14	84	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste		bitter taste receptor activity				0						TATTAGTAAGCATTCTGAACA	0.378													7	6					0	0	0.001984	0	0
PRB4	5545	broad.mit.edu	37	12	11461798	11461798	+	Missense_Mutation	SNP	C	G	G	rs77336955		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11461798C>G	uc001qzf.1	-	3	153	c.119G>C	c.(118-120)CGC>CCC	p.R40P	PRB4_uc001qzt.2_Missense_Mutation_p.R40P	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	40	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|1.					extracellular region				ovary(1)	1						TCCTTGTGGGCGTCGTCCTTC	0.552										HNSCC(22;0.051)			20	574					0	0	0.003610	0	0
PRB1	5542	broad.mit.edu	37	12	11506464	11506464	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11506464C>T	uc001qzw.1	-	4	610	c.573G>A	c.(571-573)CAG>CAA	p.Q191Q	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	252	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|10.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTGGGGGACCCTGAGGTTTCT	0.607													21	70					0	0	0.005524	0	0
ERP27	121506	broad.mit.edu	37	12	15073916	15073916	+	Missense_Mutation	SNP	G	A	A	rs149706342		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:15073916G>A	uc001rco.2	-	4	421	c.400C>T	c.(400-402)CGT>TGT	p.R134C		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	134	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						TCAATGAAACGGCTCAATTTG	0.428													5	30					0	0	0.001984	0	0
ABCC9	10060	broad.mit.edu	37	12	21971159	21971159	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:21971159G>A	uc001rfi.1	-	30	3716	c.3696C>T	c.(3694-3696)CTC>CTT	p.L1232L	ABCC9_uc001rfh.2_Silent_p.L1232L|ABCC9_uc001rfj.1_Silent_p.L1196L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1232	Extracellular (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGATGCAGTGAGGACAATGC	0.378													61	42					0	0	0.003610	0	0
SOX5	6660	broad.mit.edu	37	12	24048932	24048932	+	Missense_Mutation	SNP	G	T	T	rs61756182		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:24048932G>T	uc001rfw.2	-	2	167	c.65C>A	c.(64-66)CCG>CAG	p.P22Q	SOX5_uc001rfx.2_Missense_Mutation_p.P9Q|SOX5_uc001rfy.2_Missense_Mutation_p.P9Q|SOX5_uc010siv.1_Missense_Mutation_p.P9Q|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.P9Q|SOX5_uc001rga.2_Missense_Mutation_p.P22Q	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	22					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TTCCCCATACGGAGAGGCTGG	0.498													4	53					2.56e-06	2.68145e-06	0.009096	1	0
PKP2	5318	broad.mit.edu	37	12	32996194	32996194	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:32996194C>T	uc001rlj.3	-	6	1547	c.1432G>A	c.(1432-1434)GCC>ACC	p.A478T	PKP2_uc001rlk.3_Intron|PKP2_uc010skj.1_Intron	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	478					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ggattacaggcgtgagccacc	0.174													5	57					0	0	0.001168	0	0
MLL2	8085	broad.mit.edu	37	12	49438017	49438017	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:49438017C>T	uc001rta.3	-	21	5154	c.5154G>A	c.(5152-5154)GCG>GCA	p.A1718A		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1718					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCAACACCTCCGCCTGTGCAG	0.617			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)	OREG0021780	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	40					0	0	0.010504	0	0
KRT81	3887	broad.mit.edu	37	12	52681031	52681031	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52681031G>A	uc001sab.2	-	7	1152	c.1102C>T	c.(1102-1104)CTG>TTG	p.L368L	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	368	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGCTCGGCCAGCTTGCAGCGG	0.622													17	131					0	0	0.007413	0	0
KRT81	3887	broad.mit.edu	37	12	52681047	52681047	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52681047A>G	uc001sab.2	-	7	1136	c.1086T>C	c.(1084-1086)AGT>AGC	p.S362S	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	362	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGCGGGCATCACTGAGGGCCG	0.612													11	103					0	0	0.001855	0	0
KRT86	3892	broad.mit.edu	37	12	52698742	52698742	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52698742A>G	uc010snq.1	+	5	799	c.666A>G	c.(664-666)AAA>AAG	p.K222K	KRT86_uc009zmg.2_Silent_p.K222K|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.K222K	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	222	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		ACCTCCGCAAATCAGACCTGG	0.607													13	509					0	0	0.002450	0	0
KRT86	3892	broad.mit.edu	37	12	52699041	52699041	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52699041G>A	uc010snq.1	+	6	886	c.753G>A	c.(751-753)CAG>CAA	p.Q251Q	KRT86_uc009zmg.2_Silent_p.Q251Q|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.Q251Q	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	251	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGTTCTCCAGTCCCACATCT	0.557													10	279					0	0	0.008291	0	0
KRT86	3892	broad.mit.edu	37	12	52699111	52699111	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52699111A>G	uc010snq.1	+	6	956	c.823A>G	c.(823-825)ATT>GTT	p.I275V	KRT86_uc009zmg.2_Missense_Mutation_p.I275V|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.I275V	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	275	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGACTGCATCATTGCCGAGAT	0.592													10	256					0	0	0.006214	0	0
KRT86	3892	broad.mit.edu	37	12	52699122	52699122	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52699122C>T	uc010snq.1	+	6	967	c.834C>T	c.(832-834)ATC>ATT	p.I278I	KRT86_uc009zmg.2_Silent_p.I278I|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.I278I	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	278	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		TTGCCGAGATCAAGGCACAGT	0.582													20	236					0	0	0.008871	0	0
KRT83	3889	broad.mit.edu	37	12	52710790	52710790	+	Silent	SNP	T	C	C	rs143202217	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52710790T>C	uc001saf.2	-	5	831	c.768A>G	c.(766-768)CAA>CAG	p.Q256Q		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	256	Rod.|Coil 1B.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		AGATGTGGGATTGGAGAATGC	0.522													6	123					0	0	0.001168	0	0
KRT85	3891	broad.mit.edu	37	12	52761062	52761062	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:52761062G>A	uc001sag.2	-	1	248	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	43	Head.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCGGTAGCAGGACACCCCTCG	0.682													10	11					0	0	0.006214	0	0
OR6C6	283365	broad.mit.edu	37	12	55688303	55688303	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:55688303G>A	uc010sph.1	-	1	714	c.714C>T	c.(712-714)ACC>ACT	p.T238T		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						GGGAAGTACAGGTGGAAAATG	0.383													6	62					0	0	0.001984	0	0
MMP19	4327	broad.mit.edu	37	12	56234912	56234912	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:56234912C>T	uc001sib.2	-	3	403	c.282G>A	c.(280-282)AAG>AAA	p.K94K	MMP19_uc001sia.2_5'Flank|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Silent_p.K94K	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	94					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						ATTTAAGGGTCTTCTGGTTGA	0.552													97	198					0	0	0.003610	0	0
NAB2	4665	broad.mit.edu	37	12	57485001	57485001	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:57485001G>C	uc001smz.2	+	2	555	c.177G>C	c.(175-177)GAG>GAC	p.E59D		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	59	NCD1.				cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCTACTATGAGACCTTCATCC	0.632													33	49					0	0	0.010818	0	0
STAT6	6778	broad.mit.edu	37	12	57499974	57499974	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:57499974C>G	uc009zpe.2	-	7	931	c.680G>C	c.(679-681)AGG>ACG	p.R227T	STAT6_uc009zpf.2_Missense_Mutation_p.R227T|STAT6_uc001sna.2_Missense_Mutation_p.R227T|STAT6_uc010srb.1_Missense_Mutation_p.R117T|STAT6_uc010src.1_Missense_Mutation_p.R117T|STAT6_uc010srd.1_Missense_Mutation_p.R117T|STAT6_uc009zpg.2_Missense_Mutation_p.R276T	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	227					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						CTAGCCCAACCTCTCCTGGAG	0.627													10	110					0	0	0.008291	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57992919	57992919	+	Missense_Mutation	SNP	C	G	G	rs147041101		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:57992919C>G	uc001sou.2	+	5	716	c.585C>G	c.(583-585)AAC>AAG	p.N195K	PIP4K2C_uc001sot.2_Missense_Mutation_p.N195K|PIP4K2C_uc010srs.1_Missense_Mutation_p.N177K|PIP4K2C_uc010srt.1_Missense_Mutation_p.N147K	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	195	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					GTGTGGACAACGAAGACAGCT	0.512													4	65					0	0	0.009096	0	0
FRS2	10818	broad.mit.edu	37	12	69968409	69968409	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:69968409C>T	uc001suy.2	+	10	1711	c.1201C>T	c.(1201-1203)CCA>TCA	p.P401S	FRS2_uc001suz.2_Missense_Mutation_p.P401S|FRS2_uc009zrj.2_Missense_Mutation_p.P401S|FRS2_uc009zrk.2_Missense_Mutation_p.P401S	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	401					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TGTAACAGTGCCAGCAAGTGC	0.398													6	17					0	0	0.001168	0	0
LRRC10	376132	broad.mit.edu	37	12	70004511	70004511	+	Silent	SNP	C	G	G	rs147784049	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:70004511C>G	uc001svc.2	-	1	432	c.108G>C	c.(106-108)CTG>CTC	p.L36L		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	36						nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GGCTCCCACTCAGATCCACCA	0.607													7	9					0	0	0.003080	0	0
ALKBH2	121642	broad.mit.edu	37	12	109526072	109526072	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:109526072T>A	uc001tnx.2	-	4	1118	c.725A>T	c.(724-726)AAG>ATG	p.K242M	ALKBH2_uc001tny.2_Missense_Mutation_p.K242M|ALKBH2_uc010sxj.1_Missense_Mutation_p.K242M|ALKBH2_uc009zvd.2_3'UTR|ALKBH2_uc010sxk.1_3'UTR	NM_001145374	NP_001138846	Q6NS38	ALKB2_HUMAN	AlkB homolog 2	242	Fe2OG dioxygenase.				DNA dealkylation involved in DNA repair|oxidative DNA demethylation	nucleoplasm	cytosine C-5 DNA demethylase activity|damaged DNA binding|DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0					Vitamin C(DB00126)	CAGAACCTTCTTTCTCACGGG	0.468								Direct_reversal_of_damage					26	56					0	0	0.004656	0	0
DNAH10	196385	broad.mit.edu	37	12	124416370	124416370	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:124416370G>A	uc001uft.3	+	74	12775	c.12750G>A	c.(12748-12750)ACG>ACA	p.T4250T	DNAH10_uc001ufu.3_Silent_p.T163T	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4250	Potential.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCCGGATGACGAAGTCTCTGG	0.562													10	55					0	0	0.006214	0	0
BRCA2	675	broad.mit.edu	37	13	32910968	32910968	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:32910968G>T	uc001uub.1	+	11	2703	c.2476G>T	c.(2476-2478)GAA>TAA	p.E826*		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	826	Interaction with NPM1.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TGCTTTAAATGAAAATTATAA	0.323			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			5	10					3.59834e-05	3.73431e-05	0.001168	1	0
ZC3H13	23091	broad.mit.edu	37	13	46549612	46549612	+	Silent	SNP	C	T	T	rs142530497	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:46549612C>T	uc010tfw.1	-	11	2280	c.2274G>A	c.(2272-2274)AGG>AGA	p.R758R	ZC3H13_uc001vas.1_Silent_p.R758R|ZC3H13_uc001vat.1_Silent_p.R758R	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	758	Arg/Glu-rich.|Potential.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		gctctctctccctctctctct	0.154													6	48					0	0	0.013537	0	0
DZIP1	22873	broad.mit.edu	37	13	96293693	96293693	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:96293693C>G	uc001vmk.2	-	5	1305	c.453G>C	c.(451-453)CTG>CTC	p.L151L	DZIP1_uc001vml.2_Silent_p.L151L|DZIP1_uc001vmn.2_Silent_p.L140L	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	151					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CGCAGTGGCTCAGGCGCAGCC	0.592													9	11					0	0	0.004482	0	0
LIG4	3981	broad.mit.edu	37	13	108862231	108862231	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:108862231C>T	uc001vqn.2	-	2	1659	c.1386G>A	c.(1384-1386)TTG>TTA	p.L462L	LIG4_uc001vqo.2_Silent_p.L462L|LIG4_uc010agg.1_Silent_p.L395L|LIG4_uc010agf.2_Silent_p.L462L|LIG4_uc001vqp.2_Silent_p.L462L	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	462					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TTAAAATGTCCAATTCATCCA	0.423								NHEJ					157	73					0	0	0.003610	0	0
CUL4A	8451	broad.mit.edu	37	13	113897336	113897336	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:113897336G>C	uc010tjy.1	+	12	1101	c.1090G>C	c.(1090-1092)GAC>CAC	p.D364H	CUL4A_uc010tjx.1_Missense_Mutation_p.D264H|CUL4A_uc010agu.2_Missense_Mutation_p.D225H|CUL4A_uc010tjz.1_Missense_Mutation_p.D43H	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	364					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			CATGGTCCAAGACCTGTTGGA	0.448													9	26					0	0	0.004482	0	0
CPNE6	9362	broad.mit.edu	37	14	24545748	24545748	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:24545748G>C	uc001wll.2	+	13	1246	c.1147G>C	c.(1147-1149)GAA>CAA	p.E383Q	CPNE6_uc010tnv.1_Missense_Mutation_p.E438Q|CPNE6_uc001wlm.2_Missense_Mutation_p.E208Q|CPNE6_uc001wln.2_Silent_p.R9R	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	383	VWFA.				lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		CTTTGACCCGGAAAATCCTGA	0.587													44	100					0	0	0.009718	0	0
DDHD1	80821	broad.mit.edu	37	14	53525268	53525268	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:53525268C>T	uc001xai.2	-	9	2149	c.1919G>A	c.(1918-1920)GGA>GAA	p.G640E	DDHD1_uc001xaj.2_Missense_Mutation_p.G647E|DDHD1_uc001xah.2_Missense_Mutation_p.G640E|DDHD1_uc001xag.2_Missense_Mutation_p.G222E|DDHD1_uc001xak.1_Missense_Mutation_p.G36E	NM_001160148	NP_001153620	Q8NEL9	DDHD1_HUMAN	DDHD domain containing 1 isoform c	640	DDHD.				lipid catabolic process	cytoplasm	hydrolase activity|metal ion binding			ovary(2)	2	Breast(41;0.037)					GTCTTGACTTCCAGTATTTCC	0.383													19	41					0	0	0.007413	0	0
JKAMP	51528	broad.mit.edu	37	14	59970581	59970581	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:59970581G>C	uc001xei.3	+	7	1271	c.769G>C	c.(769-771)GAT>CAT	p.D257H	JKAMP_uc001xef.3_Missense_Mutation_p.D243H|JKAMP_uc001xeh.3_Missense_Mutation_p.D237H|JKAMP_uc001xeg.3_Missense_Mutation_p.D251H|JKAMP_uc010try.1_Missense_Mutation_p.D180H|JKAMP_uc001xej.3_Missense_Mutation_p.D180H	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	258	Cytoplasmic (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						GAACTGCTATGATCTTCTGGT	0.308													5	25					0	0	0.000602	0	0
FNTB	2342	broad.mit.edu	37	14	65494228	65494228	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:65494228C>T	uc001xia.2	+	5	597	c.432C>T	c.(430-432)CCC>CCT	p.P144P	FNTB_uc010tsl.1_Silent_p.P178P|FNTB_uc010tsm.1_Silent_p.P98P|MAX_uc001xic.1_Intron|FNTB_uc001xid.2_5'UTR|FNTB_uc010tso.1_Silent_p.P59P	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	144	PFTB 1.				protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		GAGGAGGACCCGGTCAGTATC	0.502													10	135					0	0	0.008291	0	0
RGS6	9628	broad.mit.edu	37	14	72936741	72936741	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:72936741C>G	uc001xna.3	+	8	1009	c.486C>G	c.(484-486)GCC>GCG	p.A162A	RGS6_uc010ttn.1_Silent_p.A162A|RGS6_uc001xmx.3_Silent_p.A162A|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Silent_p.A162A|RGS6_uc010ttp.1_Silent_p.A93A|RGS6_uc001xmz.1_Silent_p.A23A|RGS6_uc010arg.2_RNA	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	162					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		TCCAGAGGGCCTTTGCGAGGA	0.393													8	28					0	0	0.004482	0	0
FAM161B	145483	broad.mit.edu	37	14	74402681	74402681	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:74402681C>G	uc001xpd.1	-	8	1882	c.1776G>C	c.(1774-1776)GAG>GAC	p.E592D		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TGGTCTCTTTCTCTTGAACAG	0.468													7	39					0	0	0.001984	0	0
GOLGA5	9950	broad.mit.edu	37	14	93273203	93273203	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:93273203G>A	uc001yaz.1	+	3	849	c.667G>A	c.(667-669)GAA>AAA	p.E223K		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	223	Cytoplasmic (Potential).|Potential.				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		CAAATCACATGAACTGTCTAA	0.438			T	RET	papillary thyroid								13	26					0	0	0.002450	0	0
SERPINA3	12	broad.mit.edu	37	14	95081321	95081321	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:95081321C>T	uc001ydp.2	+	2	622	c.543C>T	c.(541-543)AAC>AAT	p.N181N	SERPINA3_uc001ydo.3_Silent_p.N206N|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.N181N|SERPINA3_uc001yds.2_Silent_p.N181N|SERPINA3_uc010avg.2_Silent_p.N181N	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	181					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity	p.N181N(1)		ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		AGCTCATCAACGACTACGTGA	0.493													36	46					0	0	0.003755	0	0
CLMN	79789	broad.mit.edu	37	14	95669509	95669509	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:95669509A>G	uc001yef.2	-	9	2293	c.2177T>C	c.(2176-2178)CTC>CCC	p.L726P		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	726						integral to membrane	actin binding				0				Epithelial(152;0.193)		GAAATAGAAGAGGTCGTGGGG	0.512													8	127					0	0	0.006214	0	0
AK7	122481	broad.mit.edu	37	14	96944864	96944864	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:96944864G>C	uc001yfn.2	+	15	1662	c.1618G>C	c.(1618-1620)GAG>CAG	p.E540Q		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	540					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		AAACCTTCCTGAGAGCATCGT	0.517													17	56					0	0	0.004990	0	0
JAG2	3714	broad.mit.edu	37	14	105615570	105615570	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:105615570C>T	uc001yqg.2	-	13	2094	c.1690G>A	c.(1690-1692)GAT>AAT	p.D564N	JAG2_uc010axf.2_5'Flank|JAG2_uc001yqf.2_5'UTR|JAG2_uc001yqh.2_Missense_Mutation_p.D526N	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	564	EGF-like 9.|Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CCAAAGTCATCAGGGCAGGCG	0.667													53	131					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106236243	106236243	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:106236243C>T	uc010tyt.1	-	3616		c.57701G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CACGTGACCTCAGGGGTCCGG	0.582													13	105					0	0	0.001855	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42092085	42092085	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:42092085G>A	uc001zok.3	+	3	465	c.179G>A	c.(178-180)CGA>CAA	p.R60Q	MAPKBP1_uc001zoj.3_Missense_Mutation_p.R60Q|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.R60Q|MAPKBP1_uc010udb.1_Intron|MAPKBP1_uc010bck.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	60										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		TGTGACCCCCGATCAGGTTTA	0.507													43	57					0	0	0.006999	0	0
CATSPER2P1	440278	broad.mit.edu	37	15	44028184	44028184	+	RNA	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:44028184T>C	uc001zss.2	-	4		c.1597A>G				NR_002318				Homo sapiens cation channel, sperm associated 2 pseudogene 1, mRNA (cDNA clone IMAGE:5294645).												0						accatgttggtcaggctggtc	0.01													6	16					0	0	0.006214	0	0
DUOX1	53905	broad.mit.edu	37	15	45433188	45433188	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:45433188T>C	uc001zus.1	+	14	1831	c.1485T>C	c.(1483-1485)CCT>CCC	p.P495P	DUOX1_uc001zut.1_Silent_p.P495P|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	495	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		ACCCTGGACCTCTGTTCAGCA	0.597													19	178					0	0	0.007413	0	0
DUOX1	53905	broad.mit.edu	37	15	45433204	45433204	+	Missense_Mutation	SNP	G	A	A	rs149290661	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:45433204G>A	uc001zus.1	+	14	1847	c.1501G>A	c.(1501-1503)GTC>ATC	p.V501I	DUOX1_uc001zut.1_Missense_Mutation_p.V501I|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	501	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CAGCACCATCGTCCTTGAACA	0.597													14	201					0	0	0.003163	0	0
DUOX1	53905	broad.mit.edu	37	15	45433212	45433212	+	Missense_Mutation	SNP	A	C	C	rs111482565		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:45433212A>C	uc001zus.1	+	14	1855	c.1509A>C	c.(1507-1509)GAA>GAC	p.E503D	DUOX1_uc001zut.1_Missense_Mutation_p.E503D|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	503	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		TCGTCCTTGAACAATTTGTGC	0.607													13	206					0	0	0.002450	0	0
DMXL2	23312	broad.mit.edu	37	15	51828879	51828879	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:51828879T>G	uc002abf.2	-	12	2023	c.1798A>C	c.(1798-1800)AGT>CGT	p.S600R	DMXL2_uc010ufy.1_Missense_Mutation_p.S600R|DMXL2_uc010bfa.2_Missense_Mutation_p.S600R	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	600	WD 5.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATATGTGTACTGTGGGATCTA	0.448													22	34					0	0	0.003954	0	0
IGDCC4	57722	broad.mit.edu	37	15	65685759	65685759	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:65685759A>T	uc002aou.1	-	10	2035	c.1825T>A	c.(1825-1827)TTC>ATC	p.F609I	IGDCC4_uc002aot.1_Missense_Mutation_p.F197I	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	609	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGGGCCCCGAAGCCGGCTGCT	0.562													16	82					0	0	0.004990	0	0
MAP2K5	5607	broad.mit.edu	37	15	67878265	67878265	+	Silent	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:67878265G>T	uc002aqu.2	+	5	1013	c.360G>T	c.(358-360)CTG>CTT	p.L120L	MAP2K5_uc002aqt.1_Silent_p.L120L|MAP2K5_uc002aqv.2_Silent_p.L120L|MAP2K5_uc002aqw.2_5'UTR|MAP2K5_uc010ujw.1_Silent_p.L84L	NM_145160	NP_660143	Q13163	MP2K5_HUMAN	mitogen-activated protein kinase kinase 5	120	Interaction with MAPK7 (By similarity).				nerve growth factor receptor signaling pathway		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)	2						TACATGGCCTGAAGGTACGAA	0.373													7	23					0.00198382	0.00203441	0.001984	1	0
GLCE	26035	broad.mit.edu	37	15	69560957	69560957	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:69560957G>A	uc002ary.1	+	5	1456	c.1228G>A	c.(1228-1230)GAT>AAT	p.D410N		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	410	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TGCTGCTAGTGATTGGCTAGT	0.478													11	52					0	0	0.008291	0	0
THSD4	79875	broad.mit.edu	37	15	72069591	72069591	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:72069591T>C	uc002atb.1	+	17	3014	c.2935T>C	c.(2935-2937)TAC>CAC	p.Y979H	THSD4_uc002ate.2_Missense_Mutation_p.Y619H	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	979	PLAC.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						CAAGGACAAGTACTACAACTG	0.418													25	38					0	0	0.002780	0	0
MYO9A	4649	broad.mit.edu	37	15	72191121	72191121	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:72191121C>A	uc002atl.3	-	25	4196	c.3723G>T	c.(3721-3723)CAG>CAT	p.Q1241H	MYO9A_uc010biq.2_Missense_Mutation_p.Q861H|MYO9A_uc002atn.1_Missense_Mutation_p.Q1222H|MYO9A_uc002atk.2_5'UTR|MYO9A_uc002atm.1_5'UTR	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1241	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CCACACCACTCTGGCTTTGGG	0.463													21	135					1.55469e-16	1.67681e-16	0.003330	1	0
C15orf39	56905	broad.mit.edu	37	15	75499074	75499074	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:75499074A>T	uc002azp.3	+	2	1005	c.685A>T	c.(685-687)AGG>TGG	p.R229W	C15orf39_uc002azq.3_Missense_Mutation_p.R229W|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	229											0						CCTGGCCTCCAGGTACACAGG	0.602													16	91					0	0	0.004990	0	0
KIAA1199	57214	broad.mit.edu	37	15	81201527	81201527	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:81201527C>A	uc002bfw.1	+	13	1937	c.1677C>A	c.(1675-1677)TTC>TTA	p.F559L	KIAA1199_uc010unn.1_Missense_Mutation_p.F559L	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	559				HFHLAGD -> TRPPTRP (in Ref. 5; CAB94391).						upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CGATTCACTTCCACCTGGCCG	0.547													21	40					1.40151e-16	1.51304e-16	0.010504	1	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													8	16					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	15	84947171	84947171	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:84947171C>T	uc002bke.1	-	1		c.47G>A								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		TCCACCCTTCCCGGTGCCATG	0.507													4	18					0	0	0.009096	0	0
SV2B	9899	broad.mit.edu	37	15	91832822	91832822	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:91832822G>C	uc002bqv.2	+	11	2171	c.1780G>C	c.(1780-1782)GGC>CGC	p.G594R	SV2B_uc010uqv.1_Missense_Mutation_p.G443R|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	594	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TGCAATGATCGGCTGGCAGTG	0.517													32	94					0	0	0.012213	0	0
RHBDF1	64285	broad.mit.edu	37	16	113171	113171	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:113171G>A	uc002cfl.3	-	8	620	c.472C>T	c.(472-474)CCC>TCC	p.P158S	RHBDF1_uc010uty.1_Missense_Mutation_p.P181S|RHBDF1_uc010utz.1_Missense_Mutation_p.P158S|RHBDF1_uc010bqo.1_RNA	NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	158	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				CGGGCCAGGGGGTCTATGATC	0.652													4	16					0	0	0.009096	0	0
PIGQ	9091	broad.mit.edu	37	16	630886	630886	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:630886G>T	uc002cho.2	+	9	1547	c.1445G>T	c.(1444-1446)GGC>GTC	p.G482V	PIGQ_uc010bqw.2_Missense_Mutation_p.G482V|PIGQ_uc002chn.2_Missense_Mutation_p.G482V|PIGQ_uc010uui.1_Missense_Mutation_p.G496V|PIGQ_uc002chp.2_5'Flank	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	482	Helical; (Potential).|Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCCGTGCAGGGCCTGATCCAT	0.667													11	150					0.00829132	0.00848729	0.008291	1	0
MAPK8IP3	23162	broad.mit.edu	37	16	1816594	1816594	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:1816594A>T	uc002cmk.2	+	23	3001	c.2881A>T	c.(2881-2883)ACG>TCG	p.T961S	MAPK8IP3_uc002cml.2_Missense_Mutation_p.T955S|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.T962S	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	961					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						CGGGGACCCCACGGGAGCAGG	0.706													9	25					0	0	0.006214	0	0
CLDN9	9080	broad.mit.edu	37	16	3063465	3063465	+	Silent	SNP	C	T	T	rs61743246		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3063465C>T	uc010uwo.1	+	1	1009	c.102C>T	c.(100-102)GCC>GCT	p.A34A		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	34	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGGTGACCGCCTTCATCGGCA	0.657													12	272					0	0	0.010504	0	0
CLDN9	9080	broad.mit.edu	37	16	3063579	3063579	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3063579T>G	uc010uwo.1	+	1	1123	c.216T>G	c.(214-216)GCT>GCG	p.A72A		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	72	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CACTGCTGGCTCTGCCGCAGG	0.657													22	250					0	0	0.002299	0	0
CLDN9	9080	broad.mit.edu	37	16	3063600	3063600	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3063600C>T	uc010uwo.1	+	1	1144	c.237C>T	c.(235-237)GCC>GCT	p.A79A		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	79	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						ACCTGCAGGCCGCACGTGCCC	0.647													19	244					0	0	0.008871	0	0
CLDN9	9080	broad.mit.edu	37	16	3063630	3063631	+	Missense_Mutation	DNP	GC	TG	TG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3063630_3063631GC>TG	uc010uwo.1	+	1	1174_1175	c.267_268GC>TG	c.(265-270)CTGCTG>CTTGTG	p.L90V		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	90	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TTGCCCTCCTGCTGGCCCTGCT	0.653													17	296					0	0	0.004672	0	0
CLDN9	9080	broad.mit.edu	37	16	3063859	3063859	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3063859C>T	uc010uwo.1	+	1	1403	c.496C>T	c.(496-498)CTG>TTG	p.L166L		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	166	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CTCCCTCTACCTGGGCTGGGC	0.721													15	126					0	0	0.003163	0	0
CLDN6	9074	broad.mit.edu	37	16	3065589	3065589	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065589C>T	uc002csu.3	-	2	494	c.434G>A	c.(433-435)CGG>CAG	p.R145Q		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	145	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						ATAGAAGTCCCGGATGATGGC	0.627													9	135					0	0	0.010729	0	0
CLDN6	9074	broad.mit.edu	37	16	3065846	3065846	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065846G>C	uc002csu.3	-	2	237	c.177C>G	c.(175-177)ACC>ACG	p.T59T		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	59	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCATCTGGCCGGTGCTCTGCA	0.642													29	347					0	0	0.006320	0	0
CLDN6	9074	broad.mit.edu	37	16	3065921	3065921	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065921A>G	uc002csu.3	-	2	162	c.102T>C	c.(100-102)GCT>GCC	p.A34A		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	34	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCCGATGAAAGCGGTCACCT	0.632													14	321					0	0	0.006122	0	0
CLDN6	9074	broad.mit.edu	37	16	3065938	3065938	+	Missense_Mutation	SNP	T	G	G	rs141047348	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065938T>G	uc002csu.3	-	2	145	c.85A>C	c.(85-87)ATG>CTG	p.M29L		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	29	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						ACCTTCCACATGGGCAGGGCA	0.632													18	273					0	0	0.012319	0	0
CLDN6	9074	broad.mit.edu	37	16	3065948	3065948	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065948A>G	uc002csu.3	-	2	135	c.75T>C	c.(73-75)TGT>TGC	p.C25C		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	25	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGGGCAGGGCACAGGAGACCA	0.627													13	247					0	0	0.006122	0	0
TRAP1	10131	broad.mit.edu	37	16	3716075	3716075	+	Missense_Mutation	SNP	A	T	T	rs138210295		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3716075A>T	uc002cvt.3	-	12	1369	c.1280T>A	c.(1279-1281)ATT>AAT	p.I427N	TRAP1_uc002cvs.2_Missense_Mutation_p.I218N|TRAP1_uc010uxf.1_Missense_Mutation_p.I374N	NM_016292	NP_057376	Q12931	TRAP1_HUMAN	TNF receptor-associated protein 1 precursor	427					cellular response to oxidative stress|protein folding	mitochondrion	ATP binding|tumor necrosis factor receptor binding|unfolded protein binding			central_nervous_system(1)	1		Ovarian(90;0.0261)				ACTCTGGTCAATGAAGAATTT	0.413													11	21					0	0	0.008291	0	0
ROGDI	79641	broad.mit.edu	37	16	4848114	4848114	+	Silent	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:4848114G>T	uc002cxv.2	-	8	705	c.603C>A	c.(601-603)CTC>CTA	p.L201L	ROGDI_uc002cxu.2_Silent_p.L111L|ROGDI_uc010bua.2_RNA|ROGDI_uc002cxw.2_Silent_p.L111L	NM_024589	NP_078865	Q9GZN7	ROGDI_HUMAN	leucine zipper domain protein	201						intracellular				ovary(1)|skin(1)	2						GGTACACCGTGAGGCAGAGCT	0.667													6	63					3.09899e-07	3.26117e-07	0.004482	1	0
SEC14L5	9717	broad.mit.edu	37	16	5046440	5046440	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:5046440A>T	uc002cye.2	+	7	939	c.759A>T	c.(757-759)TTA>TTT	p.L253F		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	253						integral to membrane|intracellular	transporter activity				0						GGCACTGGTTACAGGAGACCC	0.597													3	2					0	0	0.004672	0	0
ALG1	56052	broad.mit.edu	37	16	5125493	5125493	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:5125493T>A	uc002cym.2	+	4	536	c.495T>A	c.(493-495)GGT>GGA	p.G165G	ALG1_uc002cyj.2_Silent_p.G54G|ALG1_uc002cyn.2_Silent_p.G165G|ALG1_uc010bue.2_Silent_p.G54G|ALG1_uc010uxy.1_Silent_p.G54G	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	165	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				CCATCATGGGTCTGGTGCATG	0.552													14	98					0	0	0.006122	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11870659	11870659	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:11870659C>T	uc002dbk.2	-	4	611	c.413G>A	c.(412-414)AGA>AAA	p.R138K	ZC3H7A_uc002dbl.2_Missense_Mutation_p.R138K|ZC3H7A_uc002dbm.1_Missense_Mutation_p.R138K	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	138	TPR 3.					nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CTTTTTGTATCTTCCTAAATC	0.368													9	18					0	0	0.004482	0	0
ERCC4	2072	broad.mit.edu	37	16	14029410	14029410	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:14029410G>C	uc002dce.2	+	8	1630	c.1621G>C	c.(1621-1623)GAT>CAT	p.D541H	ERCC4_uc010uyz.1_Missense_Mutation_p.D91H	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	541					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						TTTGTCATCGGATGCTGCTTT	0.468			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				4	53					0	0	0.009096	0	0
PDILT	204474	broad.mit.edu	37	16	20395988	20395988	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:20395988A>T	uc002dhc.1	-	3	611	c.388T>A	c.(388-390)TCA>ACA	p.S130T		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	130					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						ATGGGCTCTGACCTGTTGCCC	0.368													54	149					0	0	0.003610	0	0
DNAH3	55567	broad.mit.edu	37	16	21117847	21117847	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:21117847G>A	uc010vbe.1	-	15	2248	c.2248C>T	c.(2248-2250)CGG>TGG	p.R750W	DNAH3_uc002die.2_Missense_Mutation_p.R690W	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	750	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AACTCCAGCCGTTCACTTGCA	0.423													5	34					0	0	0.000602	0	0
ITGAX	3687	broad.mit.edu	37	16	31373492	31373492	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31373492C>G	uc002ebu.1	+	11	1250	c.1183C>G	c.(1183-1185)CAG>GAG	p.Q395E	ITGAX_uc002ebt.2_Missense_Mutation_p.Q395E|ITGAX_uc010vfk.1_Missense_Mutation_p.Q45E	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	395	FG-GAP 4.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAACATGTCTCAGGAGAATGT	0.597													22	245					0	0	0.010504	0	0
ITGAX	3687	broad.mit.edu	37	16	31374491	31374492	+	Missense_Mutation	DNP	AA	CC	CC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374491_31374492AA>CC	uc002ebu.1	+	14	1573_1574	c.1506_1507AA>CC	c.(1504-1509)AGAAGG>AGCCGG	p.R502S	ITGAX_uc002ebt.2_Missense_Mutation_p.R502S|ITGAX_uc010vfk.1_Missense_Mutation_p.R152S	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	502	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGCAGTGGAGAAGGTGGTGGTG	0.644													67	855					0	0	0.004672	0	0
ITGAX	3687	broad.mit.edu	37	16	31374517	31374517	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374517A>G	uc002ebu.1	+	14	1599	c.1532A>G	c.(1531-1533)TAC>TGC	p.Y511C	ITGAX_uc002ebt.2_Missense_Mutation_p.Y511C|ITGAX_uc010vfk.1_Missense_Mutation_p.Y161C	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	511	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTGTTCTCTACGGGGAGCAG	0.642													31	910					0	0	0.010818	0	0
ITGAX	3687	broad.mit.edu	37	16	31374542	31374542	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374542T>C	uc002ebu.1	+	14	1624	c.1557T>C	c.(1555-1557)GGT>GGC	p.G519G	ITGAX_uc002ebt.2_Silent_p.G519G|ITGAX_uc010vfk.1_Silent_p.G169G	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	519	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACCCCTGGGGTCGCTTTGGGG	0.637													37	908					0	0	0.010818	0	0
ITGAX	3687	broad.mit.edu	37	16	31374544	31374544	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374544G>A	uc002ebu.1	+	14	1626	c.1559G>A	c.(1558-1560)CGC>CAC	p.R520H	ITGAX_uc002ebt.2_Missense_Mutation_p.R520H|ITGAX_uc010vfk.1_Missense_Mutation_p.R170H	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	520	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCCTGGGGTCGCTTTGGGGCG	0.637													31	913					0	0	0.008361	0	0
ITGAX	3687	broad.mit.edu	37	16	31374554	31374554	+	Silent	SNP	G	A	A	rs144979651		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374554G>A	uc002ebu.1	+	14	1636	c.1569G>A	c.(1567-1569)GCG>GCA	p.A523A	ITGAX_uc002ebt.2_Silent_p.A523A|ITGAX_uc010vfk.1_Silent_p.A173A	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	523	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTTTGGGGCGGCTCTGACAG	0.617													38	897					0	0	0.003755	0	0
ITGAX	3687	broad.mit.edu	37	16	31374578	31374578	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374578G>C	uc002ebu.1	+	14	1660	c.1593G>C	c.(1591-1593)GTG>GTC	p.V531V	ITGAX_uc002ebt.2_Silent_p.V531V|ITGAX_uc010vfk.1_Silent_p.V181V	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	531	Potential.|Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGGGGGATGTGAATGGGGACA	0.617													20	888					0	0	0.007291	0	0
ITGAX	3687	broad.mit.edu	37	16	31374635	31374635	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31374635G>A	uc002ebu.1	+	14	1717	c.1650G>A	c.(1648-1650)CGG>CGA	p.R550R	ITGAX_uc002ebt.2_Silent_p.R550R|ITGAX_uc010vfk.1_Silent_p.R200R	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	550	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity	p.R550R(1)		ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGAGAACCGGGGTGCTGTCT	0.627													21	759					0	0	0.002780	0	0
C16orf58	64755	broad.mit.edu	37	16	31503399	31503399	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31503399T>C	uc002eci.1	-	12	1252	c.1240A>G	c.(1240-1242)AAA>GAA	p.K414E	C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_Missense_Mutation_p.K152E	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	414						integral to membrane				ovary(1)|breast(1)	2						CAGCTCTCTTTCTTAGGACCT	0.557													7	27					0	0	0.004482	0	0
CES1	1066	broad.mit.edu	37	16	55846823	55846823	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:55846823T>G	uc002eim.2	-	9	1183	c.1075A>C	c.(1075-1077)ATT>CTT	p.I359L	CES1_uc010ccf.2_Missense_Mutation_p.I34L|CES1_uc002eil.2_Missense_Mutation_p.I360L|CES1_uc002ein.2_Missense_Mutation_p.I359L	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	359					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ACCATTGGAATCAACCAGCCA	0.527													7	98					0	0	0.001984	0	0
CES1	1066	broad.mit.edu	37	16	55846826	55846826	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:55846826A>T	uc002eim.2	-	9	1180	c.1072T>A	c.(1072-1074)TTG>ATG	p.L358M	CES1_uc010ccf.2_Missense_Mutation_p.L33M|CES1_uc002eil.2_Missense_Mutation_p.L359M|CES1_uc002ein.2_Missense_Mutation_p.L358M	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	358					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ATTGGAATCAACCAGCCAAAC	0.527													8	101					0	0	0.003080	0	0
MT1G	4495	broad.mit.edu	37	16	56700792	56700792	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:56700792C>T	uc002eju.1	-	3	257	c.185G>A	c.(184-186)TGA>TAA	p.*62*	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	62	Alpha.						metal ion binding|protein binding				0						GTCCCGACATCAGGCGCAGCA	0.547													190	756					0	0	0.003610	0	0
MT1G	4495	broad.mit.edu	37	16	56701251	56701251	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:56701251C>T	uc002eju.1	-	2	139	c.67G>A	c.(67-69)GAG>AAG	p.E23K	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	24	Beta.						metal ion binding|protein binding				0						CATTTGCACTCTTTGCACTTG	0.567													62	849					0	0	0.003610	0	0
MT1H	4496	broad.mit.edu	37	16	56704829	56704829	+	Silent	SNP	C	T	T	rs150116400		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:56704829C>T	uc002ejw.2	+	3	185	c.114C>T	c.(112-114)CCC>CCT	p.P38P	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	38	Alpha.						metal ion binding|protein binding				0						CCTGTTGCCCCCTGGGCTGTG	0.607													32	722					0	0	0.011902	0	0
MT1H	4496	broad.mit.edu	37	16	56704895	56704895	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:56704895T>C	uc002ejw.2	+	3	251	c.180T>C	c.(178-180)TGT>TGC	p.C60C	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	60	Alpha.	Divalent metal cation; cluster A.					metal ion binding|protein binding				0						GCAGCTGCTGTGCCTGATGTC	0.527													41	896					0	0	0.003610	0	0
NLRC5	84166	broad.mit.edu	37	16	57057717	57057717	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:57057717A>G	uc002ekk.1	+	5	601	c.376A>G	c.(376-378)AGC>GGC	p.S126G	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_5'Flank|NLRC5_uc002ekl.2_5'Flank|NLRC5_uc002ekm.2_5'Flank|NLRC5_uc010ccr.1_5'Flank	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	126					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CCCACATCAGAGCTGTGGGTC	0.597													12	21					0	0	0.010729	0	0
CCDC135	84229	broad.mit.edu	37	16	57764926	57764926	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:57764926G>C	uc002emi.2	+	17	2564	c.2475G>C	c.(2473-2475)CTG>CTC	p.L825L	CCDC135_uc002emj.2_Silent_p.L825L|CCDC135_uc002emk.2_Silent_p.L760L	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	825						cytoplasm				central_nervous_system(1)	1						ACCTGTACCTGAGTTACTGCT	0.597													4	39					0	0	0.009096	0	0
CNGB1	1258	broad.mit.edu	37	16	57996486	57996486	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:57996486A>G	uc002emt.2	-	7	506	c.441T>C	c.(439-441)CTT>CTC	p.L147L	CNGB1_uc010cdh.2_Silent_p.L147L|CNGB1_uc002emu.2_Silent_p.L147L	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	147					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CTTGGGCCTCAAGGGCCTCAT	0.473													6	93					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	16	74425609	74425609	+	Missense_Mutation	SNP	C	G	G	rs710958		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:74425609C>G	uc010vmt.1	+	6	781	c.780C>G	c.(778-780)GAC>GAG	p.D260E						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		ATCTGAAGGACTGTCTCTTTG	0.433													6	168					0	0	0.004482	0	0
PLCG2	5336	broad.mit.edu	37	16	81965113	81965113	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:81965113C>G	uc002fgt.2	+	25	2745	c.2593C>G	c.(2593-2595)CAG>GAG	p.Q865E		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	865					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GAAAGCCCCTCAGGGAAAAAA	0.522													5	78					0	0	0.001168	0	0
KIAA0182	23199	broad.mit.edu	37	16	85702027	85702027	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:85702027G>C	uc002fix.2	+	14	3486	c.3412G>C	c.(3412-3414)GAA>CAA	p.E1138Q	KIAA0182_uc002fiw.2_Missense_Mutation_p.E1034Q|KIAA0182_uc002fiy.2_Missense_Mutation_p.E1065Q|KIAA0182_uc002fiz.2_Missense_Mutation_p.E280Q|KIAA0182_uc010cho.2_Missense_Mutation_p.E318Q	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	1138	Potential.						protein binding			large_intestine(3)|ovary(1)|skin(1)	5						GGAACACATAGAAGGTAAGGG	0.453													9	47					0	0	0.004482	0	0
CXCL16	58191	broad.mit.edu	37	17	4638701	4638701	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:4638701T>C	uc002fyr.3	-	4	993	c.461A>G	c.(460-462)CAC>CGC	p.H154R	CXCL16_uc002fyq.3_5'UTR|CXCL16_uc002fys.3_Missense_Mutation_p.H154R	NM_022059	NP_071342	Q9H2A7	CXL16_HUMAN	chemokine (C-X-C motif) ligand 16	135	Extracellular (Potential).			H -> L (in Ref. 6; BAB55078).	lymphocyte chemotaxis|positive regulation of cell growth|positive regulation of cell migration|receptor-mediated endocytosis|response to interferon-gamma|response to tumor necrosis factor	extracellular space|integral to membrane|plasma membrane	chemokine activity|low-density lipoprotein receptor activity|scavenger receptor activity				0						GGCAGGGGTGTGGATATCTGA	0.572													40	31					0	0	0.007835	0	0
GPR172B	55065	broad.mit.edu	37	17	4936443	4936443	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:4936443G>C	uc002gap.3	-	5	1869	c.1156C>G	c.(1156-1158)CTG>GTG	p.L386V	GPR172B_uc002gao.3_Missense_Mutation_p.L386V|GPR172B_uc010ckw.2_Missense_Mutation_p.L264V|GPR172B_uc010ckx.2_Silent_p.V344V	NM_001104577	NP_001098047	Q9NWF4	RFT_HUMAN	G protein-coupled receptor 172B precursor	386	Helical; (Potential).					integral to plasma membrane	receptor activity|riboflavin transporter activity				0						AACACACACAGACACAGCACC	0.607													5	69					0	0	0.001168	0	0
NTN1	9423	broad.mit.edu	37	17	8926473	8926473	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:8926473C>G	uc002glw.3	+	2	890	c.783C>G	c.(781-783)AAC>AAG	p.N261K		NM_004822	NP_004813	O95631	NET1_HUMAN	netrin 1 precursor	261	Laminin N-terminal.				apoptosis|axon guidance		protein binding				0						GCGACGAGAACGAGGACGACT	0.697													2	0					0	0	0.004672	0	0
TRIM16L	147166	broad.mit.edu	37	17	18634442	18634442	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:18634442G>A	uc002gug.1	+	8	948	c.261G>A	c.(259-261)CTG>CTA	p.L87L	TRIM16L_uc010vyf.1_Silent_p.L141L|TRIM16L_uc002guh.1_Silent_p.L87L|TRIM16L_uc010cqg.1_Silent_p.L189L|TRIM16L_uc002gui.1_Silent_p.L87L|TRIM16L_uc010vyg.1_Silent_p.L87L|TRIM16L_uc010vyh.1_Intron	NM_001037330	NP_001032407	Q309B1	TR16L_HUMAN	tripartite motif-containing 16-like	87						cytoplasm					0						ACATAGGGCTGAAGGATAAAC	0.433													4	27					0	0	0.009096	0	0
KIAA0100	9703	broad.mit.edu	37	17	26942772	26942772	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:26942772C>A	uc002hbu.2	-	38	6534	c.6435G>T	c.(6433-6435)CTG>CTT	p.L2145L	SGK494_uc010waq.1_5'Flank|SGK494_uc010war.1_5'Flank|SGK494_uc002hbr.1_5'Flank|uc002hbs.1_Intron|KIAA0100_uc002hbt.2_Silent_p.L474L	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	2145						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CCAGACAGGGCAGCACCAGGT	0.552													14	29					1.15088e-07	1.21224e-07	0.004007	1	0
AP2B1	163	broad.mit.edu	37	17	33984792	33984792	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:33984792A>G	uc002hjr.2	+	14	2160	c.1971A>G	c.(1969-1971)GGA>GGG	p.G657G	AP2B1_uc002hjq.2_Silent_p.G657G|AP2B1_uc010wci.1_Silent_p.G619G|AP2B1_uc002hjs.2_Silent_p.G600G|AP2B1_uc002hjt.2_Silent_p.G657G|AP2B1_uc010ctv.2_Silent_p.G657G|AP2B1_uc010wcj.1_Silent_p.G394G	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	657	Pro-rich (stalk region).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		ATCTCCTAGGAGGAGGACTAG	0.428													7	23					0	0	0.008291	0	0
LOC284100	284100	broad.mit.edu	37	17	36214769	36214769	+	Splice_Site	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:36214769C>G	uc002hom.1	-	2		c.189_splice	c.e2+1		LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGGACTTGCCAGTGGTAGC	0.363													12	59					0	0	0.013537	0	0
LOC284100	284100	broad.mit.edu	37	17	36214775	36214775	+	RNA	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:36214775G>T	uc002hom.1	-	2		c.184C>A			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGCCAGTGGTAGCTGCTGG	0.353													55	6					2.07692e-80	2.2727e-80	0.003610	1	0
CDK12	51755	broad.mit.edu	37	17	37618489	37618489	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:37618489G>C	uc010cvv.2	+	1	751	c.165G>C	c.(163-165)TTG>TTC	p.L55F	CDK12_uc010wef.1_Missense_Mutation_p.L55F|CDK12_uc002hrw.3_Missense_Mutation_p.L55F	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	55					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						ACATGGGGTTGGTGACCCCCG	0.542										TCGA Ovarian(9;0.13)			16	33					0	0	0.003163	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197490	39197490	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39197490A>C	uc002hvw.1	-	1	224	c.160T>G	c.(160-162)TTC>GTC	p.F54V		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	54			Missing (in allele KAP1.7).|PSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQT SFCGFP -> R (in allele KAP1.6).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AATCCACAGAAGCTGGTCTGG	0.607													6	114					0	0	0.001168	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39253968	39253968	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39253968G>A	uc010wfo.1	-	1	408	c.369C>T	c.(367-369)AAC>AAT	p.N123N		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	123	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|20.			N -> T (in Ref. 2; CAC27579).		keratin filament					0						ggcggcagcagttgggctggc	0.095													18	220					0	0	0.004656	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254058	39254058	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254058G>C	uc010wfo.1	-	1	318	c.279C>G	c.(277-279)AGC>AGG	p.S93R		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	93	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|14.					keratin filament					0						agatgcagcagcTAGGGTGGC	0.333													25	315					0	0	0.010818	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254154	39254154	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254154C>T	uc010wfo.1	-	1	222	c.183G>A	c.(181-183)CAG>CAA	p.Q61Q		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	61	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|8.					keratin filament					0						AGCAGGTGGGCTGGCAGCACA	0.637													63	559					0	0	0.003610	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254184	39254184	+	Silent	SNP	T	C	C	rs7217470	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254184T>C	uc010wfo.1	-	1	192	c.153A>G	c.(151-153)AGA>AGG	p.R51R		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	51	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|6.					keratin filament					0						AGCACTGGGGTCTGCAGCAGC	0.652													16	537					0	0	0.012319	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254218	39254218	+	Missense_Mutation	SNP	T	C	C	rs112091306		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254218T>C	uc010wfo.1	-	1	158	c.119A>G	c.(118-120)TAC>TGC	p.Y40C		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	40	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|4.					keratin filament					0						GCTGGGGCGGTAGCAGGTGGT	0.657													27	524					0	0	0.012213	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254246	39254246	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254246G>C	uc010wfo.1	-	1	130	c.91C>G	c.(91-93)CAG>GAG	p.Q31E		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	31	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].					keratin filament					0						CAGGTGGTCTGACAGCAGCTG	0.632													26	495					0	0	0.006320	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254298	39254298	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39254298T>C	uc010wfo.1	-	1	78	c.39A>G	c.(37-39)CAA>CAG	p.Q13Q		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	13						keratin filament					0						GGCCACAGCCTTGGTCAGAGC	0.562													21	421					0	0	0.005443	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261685	39261685	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261685C>T	uc010wfp.1	+	1	45	c.45C>T	c.(43-45)TGC>TGT	p.C15C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	15						keratin filament					0						ACCAGGGCTGCGGCCAAGACC	0.617													20	460					0	0	0.008740	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261700	39261700	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261700T>C	uc010wfp.1	+	1	60	c.60T>C	c.(58-60)TGT>TGC	p.C20C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	20						keratin filament					0						AAGACCTCTGTCAGGAGACCT	0.642													25	515					0	0	0.003610	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261716	39261716	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261716C>T	uc010wfp.1	+	1	76	c.76C>T	c.(76-78)CGC>TGC	p.R26C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	26	1.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						GACCTGCTGCCGCCCCAGCTG	0.647													20	578					0	0	0.004289	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261731	39261731	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261731G>C	uc010wfp.1	+	1	91	c.91G>C	c.(91-93)GAG>CAG	p.E31Q		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	31	2.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						CAGCTGCTGTGAGACCACCTG	0.637													27	562					0	0	0.007835	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261759	39261759	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261759G>A	uc010wfp.1	+	1	119	c.119G>A	c.(118-120)TGC>TAC	p.C40Y		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	40	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|4.					keratin filament					0						ACCACCTGCTGCCGCCCCAGC	0.662													15	614					0	0	0.005443	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261862	39261862	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261862T>C	uc010wfp.1	+	1	222	c.222T>C	c.(220-222)TGT>TGC	p.C74C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	74	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|10.		Missing (in allele KAP.9-v1).			keratin filament					0						AGACCACCTGTTGCAGGACCA	0.652													28	411					0	0	0.010818	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261879	39261879	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261879A>G	uc010wfp.1	+	1	239	c.239A>G	c.(238-240)TAC>TGC	p.Y80C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	80	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						ACCACCTGCTACCGCCCCAGC	0.657													26	387					0	0	0.007291	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261892	39261892	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261892T>C	uc010wfp.1	+	1	252	c.252T>C	c.(250-252)TGT>TGC	p.C84C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	84	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|12.					keratin filament					0						GCCCCAGCTGTTGTGTGTCCA	0.657													25	376					0	0	0.010818	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261929	39261929	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261929C>T	uc010wfp.1	+	1	289	c.289C>T	c.(289-291)CCT>TCT	p.P97S		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	97	14.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						GTGCTGCCAGCCTGCGTGCTG	0.542													15	385					0	0	0.009535	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261976	39261976	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39261976G>C	uc010wfp.1	+	1	336	c.336G>C	c.(334-336)ACG>ACC	p.T112T		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	112	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|17.					keratin filament					0						GCTGTGAGACGACCTGCTGCC	0.398													21	303					0	0	0.003954	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262015	39262015	+	Silent	SNP	T	C	C	rs140170009	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39262015T>C	uc010wfp.1	+	1	375	c.375T>C	c.(373-375)TGT>TGC	p.C125C		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	125	20.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						ccagctgctgtcgccccagct	0.269													41	429					0	0	0.003610	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262047	39262047	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39262047A>G	uc010wfp.1	+	1	407	c.407A>G	c.(406-408)AAG>AGG	p.K136R		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	136	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|22.					keratin filament					0						agctgctgcaagccccagtgc	0.154													11	406					0	0	0.004656	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262233	39262233	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39262233G>C	uc010wfp.1	+	1	593	c.593G>C	c.(592-594)AGC>ACC	p.S198T		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	198						keratin filament					0						GTCATCTCCAGCTGCCCCCGC	0.517													7	95					0	0	0.004482	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	C	C	rs141357429	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39274087G>C	uc002hvz.2	-	1	520	c.481C>G	c.(481-483)CTG>GTG	p.L161V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	161	27.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACTGGACGCAGGcagcagcag	0.323													8	53					0	0	0.008291	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274161	39274161	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39274161T>C	uc002hvz.2	-	1	446	c.407A>G	c.(406-408)CAC>CGC	p.H136R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	136	23.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gcagctggggtggcagcaggt	0.095													8	134					0	0	0.006230	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274274	39274274	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39274274A>G	uc002hvz.2	-	1	333	c.294T>C	c.(292-294)ACT>ACC	p.T98T		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	98	15.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ggcggcagcaAGTGGGCTGGC	0.328													13	121					0	0	0.004007	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274311	39274311	+	Missense_Mutation	SNP	T	C	C	rs425755	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39274311T>C	uc002hvz.2	-	1	296	c.257A>G	c.(256-258)AAG>AGG	p.K86R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	86	13.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCACTGGGGCTTGCAGCAGCT	0.448													14	151					0	0	0.004007	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274452	39274452	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:39274452T>C	uc002hvz.2	-	1	155	c.116A>G	c.(115-117)TAC>TGC	p.Y39C		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	39	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GGGGCGACAGTAGGTGGTCCT	0.667													14	168					0	0	0.012319	0	0
KAT2A	2648	broad.mit.edu	37	17	40266554	40266554	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:40266554G>A	uc002hyx.2	-	14	2148	c.2088C>T	c.(2086-2088)TTC>TTT	p.F696F	DHX58_uc002hyv.3_5'Flank|DHX58_uc002hyw.3_5'Flank|DHX58_uc010wgf.1_5'Flank	NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	696					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						CGCCCTCCTTGAAGCAGCTGA	0.597													34	148					0	0	0.003271	0	0
PTRF	284119	broad.mit.edu	37	17	40556936	40556936	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:40556936C>T	uc002hzo.2	-	2	1101	c.942G>A	c.(940-942)GCG>GCA	p.A314A	PTRF_uc010wgi.1_Silent_p.A296A	NM_012232	NP_036364	Q6NZI2	PTRF_HUMAN	polymerase I and transcript release factor	314					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription initiation from RNA polymerase I promoter	caveola|cytosol|endoplasmic reticulum|microsome|mitochondrion|nucleoplasm	protein binding|rRNA primary transcript binding			breast(1)	1		all_cancers(22;0.00146)|Breast(137;0.00116)|all_epithelial(22;0.0134)		BRCA - Breast invasive adenocarcinoma(366;0.193)		CCTTGTAGACCGCGGTCTTGG	0.647													14	23					0	0	0.008871	0	0
CDC27	996	broad.mit.edu	37	17	45216125	45216125	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:45216125T>A	uc002ild.3	-	13	1811	c.1684A>T	c.(1684-1686)ATG>TTG	p.M562L	CDC27_uc002ile.3_Missense_Mutation_p.M568L|CDC27_uc002ilf.3_Missense_Mutation_p.M561L|CDC27_uc010wkp.1_Missense_Mutation_p.M501L|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	562					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TTTTTATCCATGTCTGTTAAG	0.353													5	18					0	0	0.010729	0	0
CDC27	996	broad.mit.edu	37	17	45219241	45219241	+	Missense_Mutation	SNP	A	C	C	rs80029043		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:45219241A>C	uc002ild.3	-	12	1656	c.1529T>G	c.(1528-1530)TTT>TGT	p.F510C	CDC27_uc002ile.3_Missense_Mutation_p.F516C|CDC27_uc002ilf.3_Missense_Mutation_p.F509C|CDC27_uc010wkp.1_Missense_Mutation_p.F449C|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	510	TPR 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGAAAGTTCAAAATAGGCCCT	0.338													8	56					0	0	0.004482	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47243614	47243614	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:47243614G>A	uc002ion.2	+	9	1332	c.1273G>A	c.(1273-1275)GTG>ATG	p.V425M	B4GALNT2_uc010wlt.1_Missense_Mutation_p.V339M|B4GALNT2_uc010wlu.1_Missense_Mutation_p.V365M	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	425	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			AGAACTGGACGTGGTAAGGGA	0.448													16	91					0	0	0.004007	0	0
STXBP4	252983	broad.mit.edu	37	17	53124450	53124450	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:53124450G>A	uc002iuf.1	+	12	1153	c.946G>A	c.(946-948)GAA>AAA	p.E316K	STXBP4_uc010dcd.1_Intron	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	316	Potential.					cytoplasm	calcium ion binding			ovary(1)	1						TTAAATATAGGAAAAATTATT	0.274													60	111					0	0	0.003610	0	0
BRIP1	83990	broad.mit.edu	37	17	59853848	59853848	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:59853848C>G	uc002izk.1	-	14	2152	c.2011G>C	c.(2011-2013)GAG>CAG	p.E671Q	BRIP1_uc002izl.1_Missense_Mutation_p.E52Q	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	671					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TCTTGGAACTCAAATGTTTCA	0.418			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				14	23					0	0	0.002450	0	0
LOC651250	651250	broad.mit.edu	37	17	66123001	66123001	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:66123001C>T	uc002jgq.2	+	6		c.2124C>T			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						CATTTTGTCTCAGTTTGTTTA	0.463													23	43					0	0	0.002299	0	0
GPR142	350383	broad.mit.edu	37	17	72363552	72363552	+	5'Flank	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:72363552A>G	uc010wqy.1	+						GPR142_uc010wqx.1_5'UTR	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142							cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTGCTGGCTGATGACGTGGTT	0.552													8	17					0	0	0.004482	0	0
AZI1	22994	broad.mit.edu	37	17	79164829	79164829	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:79164829C>G	uc002jzp.1	-	23	3030	c.2830G>C	c.(2830-2832)GAG>CAG	p.E944Q	AZI1_uc002jzm.1_Missense_Mutation_p.E376Q|AZI1_uc002jzn.1_Missense_Mutation_p.E941Q|AZI1_uc002jzo.1_Missense_Mutation_p.E905Q|AZI1_uc010wum.1_Missense_Mutation_p.E908Q|AZI1_uc002jzq.2_Missense_Mutation_p.E92Q	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	944					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			AGCTTCCGCTCCGACTGCTCC	0.662													15	58					0	0	0.003163	0	0
AZI1	22994	broad.mit.edu	37	17	79165108	79165108	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:79165108C>G	uc002jzp.1	-	22	2859	c.2659G>C	c.(2659-2661)GAG>CAG	p.E887Q	AZI1_uc002jzm.1_Missense_Mutation_p.E319Q|AZI1_uc002jzn.1_Missense_Mutation_p.E884Q|AZI1_uc002jzo.1_Missense_Mutation_p.E848Q|AZI1_uc010wum.1_Missense_Mutation_p.E851Q|AZI1_uc002jzq.2_Missense_Mutation_p.E35Q	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	887					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			TCCCTCAGCTCCTGTTCCCGG	0.677													6	95					0	0	0.001168	0	0
FASN	2194	broad.mit.edu	37	17	80048927	80048927	+	Missense_Mutation	SNP	C	T	T	rs41283367		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:80048927C>T	uc002kdu.2	-	10	1628	c.1511G>A	c.(1510-1512)CGC>CAC	p.R504H	FASN_uc002kdw.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	504	Acyl and malonyl transferases (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	CCCCATCCCGCGCCACTGTGT	0.647													9	31					0	0	0.006214	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886915	9886915	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:9886915A>G	uc002koi.3	+	2	888	c.439A>G	c.(439-441)AGT>GGT	p.S147G	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.S80G	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	147	3.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GCCCAAAGAGAGTAACATCCC	0.567													8	275					0	0	0.008291	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886918	9886918	+	Missense_Mutation	SNP	A	G	G	rs142946305		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:9886918A>G	uc002koi.3	+	2	891	c.442A>G	c.(442-444)AAC>GAC	p.N148D	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.N81D	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	148	3.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAAAGAGAGTAACATCCCCAA	0.557													8	275					0	0	0.006214	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887155	9887155	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:9887155A>G	uc002koi.3	+	2	1128	c.679A>G	c.(679-681)ACC>GCC	p.T227A	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.T160A	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	227	8.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						TATTGCCAAGACCTCAGTGAA	0.562													8	234					0	0	0.008871	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887437	9887437	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:9887437G>A	uc002koi.3	+	2	1410	c.961G>A	c.(961-963)GCC>ACC	p.A321T	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.A254T	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	321	14.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CCCAGAAGAAGCCATCCAGCC	0.597													10	264					0	0	0.006320	0	0
DSG4	147409	broad.mit.edu	37	18	28993305	28993305	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:28993305C>G	uc002kwq.2	+	16	3005	c.2870C>G	c.(2869-2871)GCA>GGA	p.A957G	DSG4_uc002kwr.2_Missense_Mutation_p.A976G	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	957	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCTGAGTTAGCAGATTACAAC	0.443													12	122					0	0	0.010729	0	0
INO80C	125476	broad.mit.edu	37	18	33059274	33059274	+	Missense_Mutation	SNP	G	C	C	rs139586727		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:33059274G>C	uc002kyy.3	-	3	486	c.369C>G	c.(367-369)AAC>AAG	p.N123K	INO80C_uc002kyw.1_Missense_Mutation_p.N123K|INO80C_uc002kyx.3_Missense_Mutation_p.N68K|INO80C_uc010dmt.2_Missense_Mutation_p.N159K	NM_194281	NP_919257	Q6PI98	IN80C_HUMAN	Ies6-similar protein isoform 2	123					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|MLL1 complex					0						AGTTAGGATCGTTCAGTTGCC	0.458													8	25					0	0	0.003080	0	0
FHOD3	80206	broad.mit.edu	37	18	34289207	34289207	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:34289207G>C	uc002kzt.1	+	14	1907	c.1810G>C	c.(1810-1812)GAA>CAA	p.E604Q	FHOD3_uc002kzr.1_Missense_Mutation_p.E604Q|FHOD3_uc002kzs.1_Missense_Mutation_p.E621Q|FHOD3_uc010dmz.1_Missense_Mutation_p.E336Q|FHOD3_uc010dna.1_5'UTR	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	604					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GCAAGAGCCGGAAGAAAGAGC	0.607													22	114					0	0	0.012319	0	0
FHOD3	80206	broad.mit.edu	37	18	34320696	34320696	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:34320696C>G	uc002kzt.1	+	17	3175	c.3078C>G	c.(3076-3078)CCC>CCG	p.P1026P	FHOD3_uc002kzs.1_Silent_p.P1043P|FHOD3_uc010dmz.1_Silent_p.P758P|FHOD3_uc010dnb.1_Silent_p.P22P	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1026	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				CTGAAATCCCCCTGGGCAGTG	0.493													11	40					0	0	0.013537	0	0
DAZAP1	26528	broad.mit.edu	37	19	1432667	1432667	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:1432667A>C	uc002lsn.2	+	11	1215	c.1026A>C	c.(1024-1026)CCA>CCC	p.P342P	DAZAP1_uc002lsm.2_Silent_p.P342P|DAZAP1_uc002lso.2_Silent_p.P341P|DAZAP1_uc002lsl.1_Silent_p.P342P	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	342	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCTCAGCCAGACTTCCCCT	0.667													55	77					0	0	0.003610	0	0
REXO1	57455	broad.mit.edu	37	19	1816800	1816801	+	Missense_Mutation	DNP	AT	GC	GC	rs143450089	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:1816800_1816801AT>GC	uc002lua.3	-	13	3308_3309	c.3213_3214AT>GC	c.(3211-3216)ACATAT>ACGCAT	p.Y1072H	REXO1_uc010dsq.2_Missense_Mutation_p.Y381H|REXO1_uc010xgs.1_Missense_Mutation_p.Y58H|MIR1909_hsa-mir-1909|MI0008330_5'Flank|REXO1_uc010dsp.1_RNA	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	1072	Exonuclease.					nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCAGGCCATATGTGGTGTAGG	0.614													4	42					0	0	0.004672	0	0
EBI3	10148	broad.mit.edu	37	19	4234821	4234821	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:4234821G>A	uc002lzu.2	+	4	545	c.537G>A	c.(535-537)CGG>CGA	p.R179R		NM_005755	NP_005746	Q14213	IL27B_HUMAN	Epstein-Barr virus induced 3 precursor	179	Fibronectin type-III 2.				humoral immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of interferon-gamma biosynthetic process|T-helper 1 type immune response	extracellular space|plasma membrane	cytokine activity|cytokine receptor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0336)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTTCCACCGGGTGAGGAGGA	0.597													37	178					0	0	0.006230	0	0
CHAF1A	10036	broad.mit.edu	37	19	4428772	4428772	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:4428772C>A	uc002mal.2	+	8	1589	c.1489C>A	c.(1489-1491)CAG>AAG	p.Q497K		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	497					cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGCTGGACCAGCTCCTCCA	0.607								Chromatin_Structure					5	51					1.23904e-05	1.29181e-05	0.000602	1	0
SAFB2	9667	broad.mit.edu	37	19	5622547	5622547	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:5622547G>C	uc002mcd.2	-	1	392	c.180C>G	c.(178-180)CTC>CTG	p.L60L	SAFB_uc010xiq.1_5'Flank|SAFB_uc002mcf.2_5'Flank|SAFB_uc002mcg.2_5'Flank|SAFB_uc002mce.3_5'Flank|SAFB_uc010xir.1_5'Flank|SAFB_uc010xis.1_5'Flank|SAFB_uc010xit.1_5'Flank|SAFB_uc010xiu.1_5'Flank|SAFB2_uc010xio.1_Silent_p.L60L|SAFB2_uc010xip.1_RNA	NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	60	SAP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		TCACCTTCTTGAGCCGCTCCA	0.741													10	107					0	0	0.008291	0	0
SAFB2	9667	broad.mit.edu	37	19	5622561	5622562	+	Silent	DNP	GG	AA	AA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:5622561_5622562GG>AA	uc002mcd.2	-	1	377_378	c.165_166CC>TT	c.(163-168)GTCCTG>GTTTTG	p.55_56VL>VL	SAFB_uc010xiq.1_5'Flank|SAFB_uc002mcf.2_5'Flank|SAFB_uc002mcg.2_5'Flank|SAFB_uc002mce.3_5'Flank|SAFB_uc010xir.1_5'Flank|SAFB_uc010xis.1_5'Flank|SAFB_uc010xit.1_5'Flank|SAFB_uc010xiu.1_5'Flank|SAFB2_uc010xio.1_Silent_p.55_56VL>VL|SAFB2_uc010xip.1_RNA	NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	55_56	SAP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CGCTCCATCAGGACGCTCTTGT	0.718													10	123					0	0	0.004672	0	0
ACSBG2	81616	broad.mit.edu	37	19	6177276	6177276	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:6177276A>C	uc002mef.1	+	8	1002	c.775A>C	c.(775-777)AAA>CAA	p.K259Q	ACSBG2_uc002mee.1_Missense_Mutation_p.K72Q|ACSBG2_uc002meg.1_Missense_Mutation_p.K259Q|ACSBG2_uc002meh.1_Missense_Mutation_p.K259Q|ACSBG2_uc002mei.1_Missense_Mutation_p.K209Q|ACSBG2_uc010xiz.1_Missense_Mutation_p.K259Q	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	259					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						AAAGGACTTTAAACTGACAGA	0.463													11	143					0	0	0.010729	0	0
ACSBG2	81616	broad.mit.edu	37	19	6177305	6177305	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:6177305T>C	uc002mef.1	+	8	1031	c.804T>C	c.(802-804)GTT>GTC	p.V268V	ACSBG2_uc002mee.1_Silent_p.V81V|ACSBG2_uc002meg.1_Silent_p.V268V|ACSBG2_uc002meh.1_Silent_p.V268V|ACSBG2_uc002mei.1_Silent_p.V218V|ACSBG2_uc010xiz.1_Silent_p.V268V	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	268					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGACGGTGGTTAGCTACCTCC	0.493													11	112					0	0	0.013537	0	0
CLEC4M	10332	broad.mit.edu	37	19	7832508	7832509	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:7832508_7832509CA>TG	uc002mih.2	+	7	1092_1093	c.974_975CA>TG	c.(973-975)TCA>TTG	p.S325L	CLEC4M_uc002mhy.2_3'UTR|CLEC4M_uc010xjw.1_Missense_Mutation_p.S281L|CLEC4M_uc010dvt.2_Missense_Mutation_p.S302L|CLEC4M_uc010dvs.2_Missense_Mutation_p.S324L|CLEC4M_uc010xjx.1_Missense_Mutation_p.S297L|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Intron|CLEC4M_uc002mia.2_Missense_Mutation_p.S212L	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	348	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						TCACCTCTGTCACCCAGGTAGA	0.574													9	95					0	0	0.004672	0	0
MYO1F	4542	broad.mit.edu	37	19	8615215	8615215	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:8615215C>A	uc002mkg.2	-	10	1044	c.930G>T	c.(928-930)CTG>CTT	p.L310L	MYO1F_uc002mkh.2_Silent_p.L310L	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	310	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TGTCAATGCCCAGCAGGTAGG	0.612													4	10					2.56e-06	2.68145e-06	0.009096	1	0
MUC16	94025	broad.mit.edu	37	19	9048427	9048427	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9048427T>C	uc002mkp.2	-	5	33408	c.33204A>G	c.(33202-33204)GAA>GAG	p.E11068E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11070	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGTGTGGTTTCTAGTTCAC	0.512													5	50					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9048431	9048431	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9048431A>G	uc002mkp.2	-	5	33404	c.33200T>C	c.(33199-33201)CTA>CCA	p.L11067P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11069	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGTTTCTAGTTCACCAGG	0.502													4	50					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9058347	9058347	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9058347G>C	uc002mkp.2	-	3	29303	c.29099C>G	c.(29098-29100)TCA>TGA	p.S9700*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9702	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCATCTCTGAGTGTGAAAG	0.478													12	35					0	0	0.013537	0	0
MUC16	94025	broad.mit.edu	37	19	9085757	9085757	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9085757C>A	uc002mkp.2	-	1	6262	c.6058G>T	c.(6058-6060)GTC>TTC	p.V2020F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2020	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.V2020A(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAGAAGAGACTGAATTCTCA	0.458													5	99					1.024e-07	1.07961e-07	0.000602	1	0
OR7D4	125958	broad.mit.edu	37	19	9325127	9325127	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9325127T>G	uc002mla.1	-	1	387	c.387A>C	c.(385-387)CCA>CCC	p.P129P		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGTAGTGCAGTGGGTGGCAGA	0.498													8	173					0	0	0.006214	0	0
OR7E24	26648	broad.mit.edu	37	19	9361925	9361925	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9361925C>G	uc002mlb.1	+	1	206	c.206C>G	c.(205-207)TCT>TGT	p.S69C		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	69	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGTCAGCTCTGACTCCCAC	0.582													10	163					0	0	0.008291	0	0
KRI1	65095	broad.mit.edu	37	19	10670571	10670571	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:10670571G>A	uc002moy.1	-	10	869	c.860C>T	c.(859-861)TCA>TTA	p.S287L	KRI1_uc002mow.1_5'UTR|KRI1_uc002mox.1_Missense_Mutation_p.S283L	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	287	Glu-rich.									ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			CCCTTCGTCTGAGGAGTCGTC	0.597													7	32					0	0	0.003080	0	0
ZNF653	115950	broad.mit.edu	37	19	11597972	11597972	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:11597972C>G	uc002mrz.1	-	5	1226	c.1173G>C	c.(1171-1173)GAG>GAC	p.E391D		NM_138783	NP_620138	Q96CK0	ZN653_HUMAN	zinc finger protein 653	391					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGTCCTCCTTCTCTACAGGGT	0.652													47	76					0	0	0.003610	0	0
ZNF844	284391	broad.mit.edu	37	19	12187111	12187111	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:12187111G>A	uc002mtb.2	+	4	1319	c.1176G>A	c.(1174-1176)ATG>ATA	p.M392I	ZNF844_uc010dym.1_Missense_Mutation_p.M235I	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAACCTTATGAATGCAAGCA	0.408													5	13					0	0	0.001984	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413													6	97					0	0	0.013537	0	0
ZNF709	163051	broad.mit.edu	37	19	12575152	12575152	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:12575152C>T	uc002mtv.3	-	4	1745	c.1584G>A	c.(1582-1584)GGG>GGA	p.G528G	ZNF709_uc002mtw.3_Silent_p.G496G|ZNF709_uc002mtx.3_Silent_p.G528G	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	528					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGGGTTTCTCCCCAGTGTGAG	0.423													5	83					0	0	0.004482	0	0
IL12RB1	3594	broad.mit.edu	37	19	18179319	18179319	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:18179319G>A	uc002nhw.1	-	11	1271	c.1207C>T	c.(1207-1209)CGA>TGA	p.R403*	IL12RB1_uc010xqb.1_Nonsense_Mutation_p.R403*|IL12RB1_uc002nhx.1_Nonsense_Mutation_p.R443*	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	403	Extracellular (Potential).|Fibronectin type-III 4.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CCAGACTCTCGACTCCAGCTG	0.418													58	78					0	0	0.003610	0	0
ZNF506	440515	broad.mit.edu	37	19	19905508	19905508	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:19905508C>G	uc010eci.2	-	4	1336	c.1188G>C	c.(1186-1188)CCG>CCC	p.P396P	ZNF506_uc002nog.2_Intron|ZNF506_uc002noh.3_Silent_p.P364P	NM_001099269	NP_001092739	Q5JVG8	ZN506_HUMAN	zinc finger protein 506 isoform 1	396					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding				0						CACATTTGTACGGTTTCTCTC	0.373													5	32					0	0	0.006122	0	0
ZNF431	170959	broad.mit.edu	37	19	21366048	21366048	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:21366048G>A	uc002npp.2	+	5	1089	c.942G>A	c.(940-942)AAG>AAA	p.K314K	ZNF431_uc010ecq.2_Silent_p.K223K|ZNF431_uc010ecr.2_Silent_p.K315K	NM_133473	NP_597730	Q8TF32	ZN431_HUMAN	zinc finger protein 431	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2						CTGGAGAGAAGCCCTACAAAT	0.413													5	60					0	0	0.010729	0	0
ZNF738	148203	broad.mit.edu	37	19	21558085	21558085	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:21558085G>C	uc002nps.3	+	3	350	c.142G>C	c.(142-144)GAG>CAG	p.E48Q	ZNF738_uc002npt.3_RNA	NR_027130				SubName: Full=cDNA FLJ14673 fis, clone NT2RP2003714, moderately similar to Zinc finger protein 430;												0						CTCTCAGGAGGAGTGGCAATG	0.428													47	139					0	0	0.003610	0	0
ZNF43	7594	broad.mit.edu	37	19	21991811	21991811	+	Missense_Mutation	SNP	G	T	T	rs149679417	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:21991811G>T	uc002nqj.2	-	4	1158	c.1028C>A	c.(1027-1029)ACA>AAA	p.T343K	ZNF43_uc010ecv.2_Missense_Mutation_p.T337K|ZNF43_uc002nql.2_Missense_Mutation_p.T337K|ZNF43_uc002nqm.2_Missense_Mutation_p.T337K|ZNF43_uc002nqk.2_Missense_Mutation_p.T273K	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	343	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TTCTTCACATGTGTAGGGTTT	0.383													5	52					0.00400662	0.00410506	0.004007	1	0
ZNF208	7757	broad.mit.edu	37	19	22154249	22154249	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22154249A>G	uc002nqp.2	-	6	3352	c.3203T>C	c.(3202-3204)CTC>CCC	p.L1068P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				ACATTTGTAGAGTTTCTCTCC	0.378													6	42					0	0	0.006214	0	0
ZNF208	7757	broad.mit.edu	37	19	22156021	22156021	+	Silent	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22156021A>T	uc002nqp.2	-	5	1664	c.1515T>A	c.(1513-1515)GGT>GGA	p.G505G	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGGGTTTCTCACCAGTATGAA	0.363													5	43					0	0	0.001984	0	0
ZNF208	7757	broad.mit.edu	37	19	22156484	22156484	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22156484G>T	uc002nqp.2	-	4	1501	c.1352C>A	c.(1351-1353)ACA>AAA	p.T451K	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTTGTAGGGTGTCTCTCCAGT	0.373													5	54					0.000157383	0.000162284	0.003080	1	0
ZNF676	163223	broad.mit.edu	37	19	22363189	22363189	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22363189C>T	uc002nqs.1	-	3	1648	c.1330G>A	c.(1330-1332)GCT>ACT	p.A444T		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	444					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTCTCTCCAGCATGAATTCTC	0.428													5	82					0	0	0.001984	0	0
ZNF99	7652	broad.mit.edu	37	19	22939435	22939435	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22939435C>T	uc010xrh.1	-	7	2736	c.2736G>A	c.(2734-2736)GGG>GGA	p.G912G		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				ACGGTTTCTCCCCAGTATGAA	0.358													6	49					0	0	0.006214	0	0
ZNF99	7652	broad.mit.edu	37	19	22941316	22941316	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:22941316A>C	uc010xrh.1	-	5	1122	c.1122T>G	c.(1120-1122)TTT>TTG	p.F374L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAAGGGCTGAAAAATTGCTAA	0.358													5	46					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	19	23405389	23405389	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23405389T>C	uc010xri.1	-	4	1776	c.1658A>G	c.(1657-1659)AAG>AGG	p.K553R						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		ATGAATTATCTTATGTTGAGT	0.363													4	60					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	19	23405868	23405868	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23405868T>G	uc010xri.1	-	4	1297	c.1179A>C	c.(1177-1179)CCA>CCC	p.P393P						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		CACATTTGTATGGTTTTTCTC	0.388													5	30					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	19	23405874	23405874	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23405874T>C	uc010xri.1	-	4	1291	c.1173A>G	c.(1171-1173)GAA>GAG	p.E391E						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;																		TGTATGGTTTTTCTCCAGTAT	0.393													5	28					0	0	0.001984	0	0
ZNF91	7644	broad.mit.edu	37	19	23542561	23542561	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23542561T>C	uc002nre.2	-	4	3333	c.3220A>G	c.(3220-3222)AGA>GGA	p.R1074G	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.R1042G	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1074						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTTCTCTCTAGTATGAATT	0.383													6	60					0	0	0.013537	0	0
ZNF91	7644	broad.mit.edu	37	19	23542775	23542775	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23542775T>A	uc002nre.2	-	4	3119	c.3006A>T	c.(3004-3006)GCA>GCT	p.A1002A	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.A970A	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1002	C2H2-type 31.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				ATTGGCTAAATGCTTTGCCAC	0.383													5	86					0	0	0.001168	0	0
ZNF91	7644	broad.mit.edu	37	19	23544724	23544724	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23544724T>C	uc002nre.2	-	4	1170	c.1057A>G	c.(1057-1059)AAA>GAA	p.K353E	ZNF91_uc010xrj.1_Missense_Mutation_p.K321E	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	353	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CCACATTCTTTACATTTGTAG	0.373													4	44					0	0	0.001984	0	0
ZNF675	171392	broad.mit.edu	37	19	23836697	23836697	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23836697T>G	uc002nri.2	-	4	1220	c.1038A>C	c.(1036-1038)GGA>GGC	p.G346G		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	346	C2H2-type 8.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TAAAAGCTTTTCCACATTCTT	0.383													6	43					0	0	0.008291	0	0
ZNF675	171392	broad.mit.edu	37	19	23836724	23836724	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23836724T>C	uc002nri.2	-	4	1193	c.1011A>G	c.(1009-1011)GAA>GAG	p.E337E		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	337					bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TGTAGGGTTTTTCTCCAGTAT	0.378													4	40					0	0	0.013537	0	0
ZNF675	171392	broad.mit.edu	37	19	23836733	23836733	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:23836733A>G	uc002nri.2	-	4	1184	c.1002T>C	c.(1000-1002)CAT>CAC	p.H334H		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	334	C2H2-type 7.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TTTCTCCAGTATGAATTCTCT	0.373													4	38					0	0	0.001168	0	0
ZNF254	9534	broad.mit.edu	37	19	24310684	24310684	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:24310684C>A	uc002nru.2	+	4	2016	c.1882C>A	c.(1882-1884)CAA>AAA	p.Q628K	ZNF254_uc010xrk.1_Missense_Mutation_p.Q543K	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	628					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				TACTGGAGAGCAACCCTACAA	0.383													6	72					0.000157383	0.000162284	0.003080	1	0
CCNE1	898	broad.mit.edu	37	19	30313028	30313028	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:30313028G>C	uc002nsn.2	+	9	1014	c.831G>C	c.(829-831)CAG>CAC	p.Q277H	CCNE1_uc002nso.2_Missense_Mutation_p.Q262H|CCNE1_uc002nsp.2_Missense_Mutation_p.Q24H	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	277					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			TCTTTATACAGATTGCAGAGG	0.498													12	24					0	0	0.010729	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38631843	38631843	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:38631843G>A	uc002ohk.2	+	11	3672	c.3163G>A	c.(3163-3165)GAC>AAC	p.D1055N		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1055					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGAGACCTACGACATGAATAC	0.637													6	97					0	0	0.001168	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903577	38903577	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:38903577C>T	uc002oir.2	-	12	1743	c.1529G>A	c.(1528-1530)CGC>CAC	p.R510H	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.R441H|RASGRP4_uc010xub.1_Missense_Mutation_p.R476H|RASGRP4_uc010xuc.1_Missense_Mutation_p.R418H|RASGRP4_uc010xud.1_Missense_Mutation_p.R413H|RASGRP4_uc010xue.1_Missense_Mutation_p.R321H|RASGRP4_uc010egb.2_Missense_Mutation_p.R496H	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	510					activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TTACCCCTGGCGTGGGGGTGG	0.582													18	29					0	0	0.012319	0	0
IL28A	282616	broad.mit.edu	37	19	39760266	39760266	+	Missense_Mutation	SNP	T	C	C	rs144434925	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:39760266T>C	uc002oku.1	+	4	461	c.409T>C	c.(409-411)TTC>CTC	p.F137L		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	137					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CCTCTCCCAGTTCCGGGCCTG	0.657													7	121					0	0	0.003080	0	0
LOC400696	400696	broad.mit.edu	37	19	40172688	40172688	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:40172688C>G	uc010xve.1	+	3	189	c.143C>G	c.(142-144)TCA>TGA	p.S48*	LOC400696_uc010xvf.1_RNA	NM_207646	NP_997529			hypothetical protein LOC400696												0						AAGGAAGACTCAGACATCGCC	0.537													3	6					0	0	0.004672	0	0
PRX	57716	broad.mit.edu	37	19	40902681	40902681	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:40902681C>T	uc002onr.2	-	7	1847	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	PRX_uc002onq.2_Silent_p.S387S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	526	15.|55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTTTCATCTCCGACACTTTCA	0.562													12	161					0	0	0.006122	0	0
LTBP4	8425	broad.mit.edu	37	19	41122877	41122877	+	Silent	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:41122877A>T	uc002ooh.1	+	23	3096	c.3096A>T	c.(3094-3096)ACA>ACT	p.T1032T	LTBP4_uc002oog.1_Silent_p.T995T|LTBP4_uc002ooi.1_Silent_p.T965T|LTBP4_uc002ooj.1_5'UTR|LTBP4_uc002ook.1_Intron|LTBP4_uc002ool.1_Intron|LTBP4_uc002oom.1_Intron|LTBP4_uc010xvp.1_Intron	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1032	Cys-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACCGCTGCACACCAGCCTGTG	0.602													4	19					0	0	0.009096	0	0
RPS19	6223	broad.mit.edu	37	19	42364896	42364896	+	Missense_Mutation	SNP	C	G	G	rs138366744		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:42364896C>G	uc002ort.2	+	2	424	c.52C>G	c.(52-54)CTG>GTG	p.L18V		NM_001022	NP_001013	P39019	RS19_HUMAN	ribosomal protein S19	18			L -> R (in DBA1).|L -> P (in DBA1; affects protein stability; does not localize to the nucleolus; affects assembly into a functional ribosomal subunit).|LA -> E (in DBA1).		endocrine pancreas development|erythrocyte differentiation|gas transport|positive regulation of cellular component movement|response to extracellular stimulus|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						CGTCAGAGCTCTGGCAGCCTT	0.557									Diamond-Blackfan_Anemia				22	82					0	0	0.012319	0	0
PSG3	5671	broad.mit.edu	37	19	43243016	43243016	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:43243016C>T	uc002oue.2	-	2	422	c.290G>A	c.(289-291)GGA>GAA	p.G97E	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.G119E	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	97	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGTTTCTCGTCCACTGTATGC	0.458													52	130					0	0	0.003610	0	0
ZNF224	7767	broad.mit.edu	37	19	44611513	44611513	+	Missense_Mutation	SNP	C	G	G	rs143646781		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:44611513C>G	uc002oyh.1	+	6	1502	c.1200C>G	c.(1198-1200)TTC>TTG	p.F400L	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	400	C2H2-type 9.			FK -> IQ (in Ref. 3; AAD32448).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				AAAAACCATTCAAATGTGAAG	0.423													23	36					0	0	0.002780	0	0
VASP	7408	broad.mit.edu	37	19	46027912	46027912	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:46027912G>A	uc002pcg.2	+	11	1383	c.1041G>A	c.(1039-1041)GTG>GTA	p.V347V	VASP_uc010eki.2_Silent_p.V181V|VASP_uc002pci.2_Silent_p.V333V	NM_003370	NP_003361	P50552	VASP_HUMAN	vasodilator-stimulated phosphoprotein	347	1.|2 X 15 AA tandem repeats of L-[EQ]-[KR]- [MV]-K-[EQ]-E-[IL]-[IL]-E-[AEV]-[FV]- [KRV]-[KQ]-E.|Potential.|EVH2.|EVH2 block C.				axon guidance|cell junction assembly|T cell receptor signaling pathway	actin cytoskeleton|cytosol|filopodium membrane|focal adhesion|lamellipodium membrane	actin binding|profilin binding|SH3 domain binding				0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0145)|GBM - Glioblastoma multiforme(486;0.154)		TACAGAGGGTGAAACAGGTAA	0.403													10	10					0	0	0.010729	0	0
SIX5	147912	broad.mit.edu	37	19	46270412	46270412	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:46270412C>G	uc002pdb.2	-	2	1200	c.805G>C	c.(805-807)GAG>CAG	p.E269Q	SIX5_uc002pdc.2_Intron	NM_175875	NP_787071	Q8N196	SIX5_HUMAN	SIX homeobox 5	269						cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00783)|GBM - Glioblastoma multiforme(486;0.0802)|Epithelial(262;0.235)		CCATCAGACTCGCTGGCCGGA	0.672													6	4					0	0	0.001984	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461932	50461932	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50461932G>T	uc010ybh.1	-	7	1422	c.1331C>A	c.(1330-1332)TCC>TAC	p.S444Y	SIGLEC11_uc010ybi.1_Missense_Mutation_p.S444Y	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	444	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GACGTGCTGGGAGCCCAGAGG	0.667													13	316					0.00185496	0.001904	0.001855	1	0
SIGLEC11	114132	broad.mit.edu	37	19	50462143	50462144	+	Missense_Mutation	DNP	CG	TC	TC	rs138150955	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50462143_50462144CG>TC	uc010ybh.1	-	7	1210_1211	c.1119_1120CG>GA	c.(1117-1122)CTCGGG>CTGAGG	p.G374R	SIGLEC11_uc010ybi.1_Missense_Mutation_p.G374R	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	374	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GTGCCGTTCCCGAGGTTTTCCA	0.673													15	175					0	0	0.004672	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50463835	50463835	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50463835C>T	uc010ybh.1	-	2	525	c.434G>A	c.(433-435)AGC>AAC	p.S145N	SIGLEC11_uc010ybi.1_Missense_Mutation_p.S145N	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	145	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GAACGCATTGCTCAGGAAACT	0.562													22	331					0	0	0.007835	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50473422	50473422	+	RNA	SNP	G	C	C	rs67889261		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50473422G>C	uc002prf.2	+	2		c.441G>C			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						ACATAGTTTCGTGAACAATTT	0.547													17	374					0	0	0.003271	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50473426	50473426	+	RNA	SNP	A	G	G	rs4009627		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50473426A>G	uc002prf.2	+	2		c.445A>G			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						AGTTTCGTGAACAATTTGTTC	0.557													13	336					0	0	0.013726	0	0
SHANK1	50944	broad.mit.edu	37	19	51201202	51201202	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:51201202C>T	uc002psx.1	-	12	1778	c.1759G>A	c.(1759-1761)GGG>AGG	p.G587R		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	587	SH3.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CCTCCTTCCCCGATGCTAAGT	0.547													23	5					0	0	0.002780	0	0
KLK15	55554	broad.mit.edu	37	19	51331009	51331009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:51331009G>A	uc002ptl.2	-	2	137	c.106C>T	c.(106-108)CAA>TAA	p.Q36*	KLK15_uc002ptm.2_Nonsense_Mutation_p.Q36*|KLK15_uc002ptn.2_Nonsense_Mutation_p.Q36*|KLK15_uc002pto.2_Nonsense_Mutation_p.Q35*|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Nonsense_Mutation_p.Q35*|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	36	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		AGAGCCACTTGCCATGGCTGG	0.602													5	40					0	0	0.001168	0	0
ZNF347	84671	broad.mit.edu	37	19	53645450	53645450	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:53645450C>G	uc002qbb.1	-	5	700	c.631G>C	c.(631-633)GAG>CAG	p.E211Q	ZNF347_uc010eql.1_Missense_Mutation_p.E212Q|ZNF347_uc002qbc.1_Missense_Mutation_p.E212Q	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	211					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		AAAGACTTCTCAACCTGATTA	0.338													7	42					0	0	0.001984	0	0
ZNF761	388561	broad.mit.edu	37	19	53958910	53958910	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:53958910A>G	uc010eqp.2	+	7	1607	c.1149A>G	c.(1147-1149)AAA>AAG	p.K383K	ZNF761_uc010ydy.1_Silent_p.K329K|ZNF761_uc002qbt.1_Silent_p.K329K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	383	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		AACCCTACAAATGTAATGAGT	0.413													6	162					0	0	0.003080	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349098	55349098	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:55349098C>T	uc002qhm.1	+	3	184	c.138C>T	c.(136-138)ATC>ATT	p.I46I	KIR2DS4_uc010yfj.1_Silent_p.I39I|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.I46I|KIR2DS4_uc002qhn.1_5'UTR	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	46	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGACAGTCATCCTGCAATGTT	0.498													11	206					0	0	0.002450	0	0
ZNF784	147808	broad.mit.edu	37	19	56133784	56133784	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56133784C>T	uc002qll.1	-	2	319	c.305G>A	c.(304-306)CGG>CAG	p.R102Q	ZNF784_uc010etb.1_RNA	NM_203374	NP_976308	Q8NCA9	ZN784_HUMAN	zinc finger protein 784	102	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		CACGTGGCACCGGCTCGGGTC	0.731													7	3					0	0	0.003080	0	0
NLRP9	338321	broad.mit.edu	37	19	56228096	56228096	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56228096C>G	uc002qly.2	-	5	2356	c.2328G>C	c.(2326-2328)CTG>CTC	p.L776L		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	776	LRR 2.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CAACTTACATCAGCCTCTCCA	0.542													28	20					0	0	0.009535	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701632	56701632	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701632G>T	uc010ygh.1	-	4	1052	c.1052C>A	c.(1051-1053)GCC>GAC	p.A351D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	351					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GGGCGGCAGGGCCTTGGCTTC	0.537													13	251					6.81908e-15	7.3336e-15	0.002450	1	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701664	56701664	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701664C>T	uc010ygh.1	-	4	1020	c.1020G>A	c.(1018-1020)CCG>CCA	p.P340P		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	340					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GGTGACTGACCGGGCCCGCAG	0.542													18	331					0	0	0.006122	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701712	56701712	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701712T>C	uc010ygh.1	-	4	972	c.972A>G	c.(970-972)CCA>CCG	p.P324P		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	324					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CAGCTTGTCCTGGGGATTCTC	0.567													32	390					0	0	0.008740	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701797	56701797	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701797G>A	uc010ygh.1	-	4	887	c.887C>T	c.(886-888)CCC>CTC	p.P296L		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	296					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCTTCTTTTGGGACTGCTCAG	0.522													13	422					0	0	0.002450	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701827	56701827	+	Missense_Mutation	SNP	T	C	C	rs61742634		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701827T>C	uc010ygh.1	-	4	857	c.857A>G	c.(856-858)AAC>AGC	p.N286S		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	286					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATCTCCTCTGTTCCCGCTGTG	0.532													14	444					0	0	0.001855	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701912	56701912	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56701912G>T	uc010ygh.1	-	4	772	c.772C>A	c.(772-774)CAG>AAG	p.Q258K		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	258					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GCTCTTTTCTGGGGTTCCTTC	0.493													13	281					5.01169e-05	5.19629e-05	0.004990	1	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704108	56704108	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56704108T>A	uc010ygh.1	-	1	314	c.314A>T	c.(313-315)AAG>ATG	p.K105M		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	105	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACCGTTCACCTTGACTAAGAC	0.552													34	117					0	0	0.012213	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704262	56704263	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56704262_56704263CT>TC	uc010ygh.1	-	1	159_160	c.159_160AG>GA	c.(157-162)CCAGAG>CCGAAG	p.E54K		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	54	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCCGACTCCTCTGGGCAGCTGA	0.559													7	115					0	0	0.004672	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733033	56733033	+	Missense_Mutation	SNP	A	G	G	rs142259207	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733033A>G	uc002qmq.2	-	5	1568	c.1402T>C	c.(1402-1404)TAC>CAC	p.Y468H	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.Y351H|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.Y468H|ZSCAN5A_uc002qms.1_Missense_Mutation_p.Y467H	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	468	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAACATTTGTAGGGTTTCTCT	0.493													11	256					0	0	0.008291	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733046	56733046	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733046G>A	uc002qmq.2	-	5	1555	c.1389C>T	c.(1387-1389)TCC>TCT	p.S463S	ZSCAN5A_uc010ygi.1_Silent_p.S346S|ZSCAN5A_uc002qmr.2_Silent_p.S463S|ZSCAN5A_uc002qms.1_Silent_p.S462S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	463					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTTTCTCTCCGGAGTGGATGC	0.498													15	258					0	0	0.002450	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733189	56733189	+	Missense_Mutation	SNP	C	T	T	rs151298410	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733189C>T	uc002qmq.2	-	5	1412	c.1246G>A	c.(1246-1248)GTC>ATC	p.V416I	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.V299I|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.V416I|ZSCAN5A_uc002qms.1_Missense_Mutation_p.V415I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	416	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TTCTGGCAGACGTCACACGTG	0.493													22	189					0	0	0.005443	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733268	56733268	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733268A>G	uc002qmq.2	-	5	1333	c.1167T>C	c.(1165-1167)TGT>TGC	p.C389C	ZSCAN5A_uc010ygi.1_Silent_p.C272C|ZSCAN5A_uc002qmr.2_Silent_p.C389C|ZSCAN5A_uc002qms.1_Silent_p.C388C	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	389	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGCGCTTCCCACAGAGATTAC	0.507													14	190					0	0	0.001855	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733280	56733280	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733280T>C	uc002qmq.2	-	5	1321	c.1155A>G	c.(1153-1155)CAA>CAG	p.Q385Q	ZSCAN5A_uc010ygi.1_Silent_p.Q268Q|ZSCAN5A_uc002qmr.2_Silent_p.Q385Q|ZSCAN5A_uc002qms.1_Silent_p.Q384Q	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	385	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGAGATTACATTGAAAGAGTC	0.517													14	202					0	0	0.001855	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733358	56733358	+	Missense_Mutation	SNP	G	C	C	rs144472423	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733358G>C	uc002qmq.2	-	5	1243	c.1077C>G	c.(1075-1077)GAC>GAG	p.D359E	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.D242E|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.D359E|ZSCAN5A_uc002qms.1_Missense_Mutation_p.D358E	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	359	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTCGCACACGTCACATGCAA	0.527													13	321					0	0	0.003163	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733399	56733399	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733399C>T	uc002qmq.2	-	5	1202	c.1036G>A	c.(1036-1038)GAT>AAT	p.D346N	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.D229N|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.D346N|ZSCAN5A_uc002qms.1_Missense_Mutation_p.D345N	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	346					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTTGGCCATCCGGGTGACTG	0.547													13	383					0	0	0.003163	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733417	56733417	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733417T>C	uc002qmq.2	-	5	1184	c.1018A>G	c.(1018-1020)AGC>GGC	p.S340G	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S223G|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S340G|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S339G	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	340					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTGACTGGGCTCGCAGGGCCT	0.547													14	385					0	0	0.003163	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733441	56733441	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733441A>G	uc002qmq.2	-	5	1160	c.994T>C	c.(994-996)TCA>CCA	p.S332P	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S215P|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S332P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S331P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	332					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAATGAATTGAATTCATCCCA	0.562													20	446					0	0	0.003330	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733445	56733445	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733445C>G	uc002qmq.2	-	5	1156	c.990G>C	c.(988-990)ATG>ATC	p.M330I	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.M213I|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.M330I|ZSCAN5A_uc002qms.1_Missense_Mutation_p.M329I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	330					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAATTGAATTCATCCCAGCTT	0.562													25	450					0	0	0.006320	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733449	56733449	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733449C>T	uc002qmq.2	-	5	1152	c.986G>A	c.(985-987)GGG>GAG	p.G329E	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.G212E|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.G329E|ZSCAN5A_uc002qms.1_Missense_Mutation_p.G328E	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	329					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGAATTCATCCCAGCTTGTCC	0.567													34	455					0	0	0.003755	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733549	56733550	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733549_56733550TG>CT	uc002qmq.2	-	5	1051_1052	c.885_886CA>AG	c.(883-888)AGCAGT>AGAGGT	p.295_296SS>RG	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.178_179SS>RG|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.295_296SS>RG|ZSCAN5A_uc002qms.1_Missense_Mutation_p.294_295SS>RG	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	295_296					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTTTTGGGACTGCTCAGATTCA	0.545													27	764					0	0	0.004672	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733575	56733575	+	Missense_Mutation	SNP	T	C	C	rs142298937	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733575T>C	uc002qmq.2	-	5	1026	c.860A>G	c.(859-861)AAC>AGC	p.N287S	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.N170S|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.N287S|ZSCAN5A_uc002qms.1_Missense_Mutation_p.N286S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	287					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTCTCCTCTGTTCCCGCTGTG	0.542													31	818					0	0	0.004289	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733967	56733967	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733967C>G	uc002qmq.2	-	4	898	c.732G>C	c.(730-732)AAG>AAC	p.K244N	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.K127N|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.K244N|ZSCAN5A_uc002qms.1_Missense_Mutation_p.K244N	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	244					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CACTGGGACTCTTTGGAAGCT	0.562													19	410					0	0	0.007413	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733994	56733994	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56733994C>A	uc002qmq.2	-	4	871	c.705G>T	c.(703-705)CTG>CTT	p.L235L	ZSCAN5A_uc010ygi.1_Silent_p.L118L|ZSCAN5A_uc002qmr.2_Silent_p.L235L|ZSCAN5A_uc002qms.1_Silent_p.L235L	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	235					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTGGGGATGTCAGTCCTGGGT	0.542													24	482					7.16444e-05	7.42149e-05	0.003954	1	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734017	56734017	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56734017T>C	uc002qmq.2	-	4	848	c.682A>G	c.(682-684)AAC>GAC	p.N228D	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.N111D|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.N228D|ZSCAN5A_uc002qms.1_Missense_Mutation_p.N228D	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	228					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTTCCCTGTTTTCCTTCAGA	0.502													13	430					0	0	0.001855	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734023	56734023	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56734023T>C	uc002qmq.2	-	4	842	c.676A>G	c.(676-678)AAG>GAG	p.K226E	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.K109E|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.K226E|ZSCAN5A_uc002qms.1_Missense_Mutation_p.K226E	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	226					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTGTTTTCCTTCAGATCCTTC	0.502													15	418					0	0	0.002450	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734043	56734043	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56734043T>G	uc002qmq.2	-	4	822	c.656A>C	c.(655-657)CAG>CCG	p.Q219P	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.Q102P|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.Q219P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.Q219P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	219					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTCCAAGGTCTGCTTGGGTCT	0.488													28	432					0	0	0.004656	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734059	56734059	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56734059A>C	uc002qmq.2	-	4	806	c.640T>G	c.(640-642)TCT>GCT	p.S214A	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S97A|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S214A|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S214A	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	214					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGTCTCAGAGACTTTGGGTCA	0.498													30	406					0	0	0.006320	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56735115	56735115	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56735115A>G	uc002qmq.2	-	3	639	c.473T>C	c.(472-474)CTG>CCG	p.L158P	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.L41P|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.L158P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.L158P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	158					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CACGTCTTTCAGATCATCTCT	0.572													16	280					0	0	0.007413	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736331	56736331	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56736331A>G	uc002qmq.2	-	2	251	c.85T>C	c.(85-87)TCA>CCA	p.S29P	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S29P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S29P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	29					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGAGTTTCTGAGGATGCCATA	0.512													17	300					0	0	0.004007	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736365	56736365	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:56736365T>G	uc002qmq.2	-	2	217	c.51A>C	c.(49-51)AGA>AGC	p.R17S	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.R17S|ZSCAN5A_uc002qms.1_Missense_Mutation_p.R17S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	17					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CCAACCCAGGTCTGTTGCAGG	0.468													11	302					0	0	0.010729	0	0
ZNF835	90485	broad.mit.edu	37	19	57175327	57175327	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:57175327C>T	uc010ygo.1	-	2	1306	c.1306G>A	c.(1306-1308)GGA>AGA	p.G436R	ZNF835_uc010ygn.1_Missense_Mutation_p.G414R	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						GGCCGCTCTCCGGTGTGGATC	0.677													28	30					0	0	0.008361	0	0
VN1R1	57191	broad.mit.edu	37	19	57967117	57967117	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:57967117G>C	uc002qos.1	-	1	738	c.738C>G	c.(736-738)CTC>CTG	p.L246L	ZNF547_uc002qpm.3_Intron	NM_020633	NP_065684	Q9GZP7	VN1R1_HUMAN	vomeronasal 1 receptor 1	246	Helical; Name=5; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)|Breast(46;0.222)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)|Lung(386;0.171)		TGTGTCTGTAGAGGAAGAAGA	0.483													13	68					0	0	0.013537	0	0
ZNF587	84914	broad.mit.edu	37	19	58370837	58370837	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:58370837C>G	uc002qql.2	+	3	1195	c.1057C>G	c.(1057-1059)CAC>GAC	p.H353D	ZNF587_uc002qqb.2_Missense_Mutation_p.H310D|ZNF587_uc010yhh.1_Missense_Mutation_p.H310D|ZNF587_uc002qqi.1_Missense_Mutation_p.H310D|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Missense_Mutation_p.H352D	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	353	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		GAGAGCTTATCACTGTGGGGA	0.448													9	189					0	0	0.004482	0	0
ZNF587	84914	broad.mit.edu	37	19	58370845	58370845	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:58370845G>A	uc002qql.2	+	3	1203	c.1065G>A	c.(1063-1065)GGG>GGA	p.G355G	ZNF587_uc002qqb.2_Silent_p.G312G|ZNF587_uc010yhh.1_Silent_p.G312G|ZNF587_uc002qqi.1_Silent_p.G312G|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Silent_p.G354G	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	355	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		ATCACTGTGGGGAATGTGGGA	0.438													8	178					0	0	0.006214	0	0
PPM1G	5496	broad.mit.edu	37	2	27604613	27604613	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:27604613C>T	uc002rkl.2	-	11	1601	c.1494G>A	c.(1492-1494)ATG>ATA	p.M498I	ZNF513_uc002rkj.2_5'Flank|ZNF513_uc002rkk.2_5'Flank|PPM1G_uc002rkm.2_Missense_Mutation_p.M279I	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	498					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGATGCAGGTCATGTTGTCAC	0.552													9	92					0	0	0.004482	0	0
PRKD3	23683	broad.mit.edu	37	2	37494578	37494578	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:37494578A>T	uc002rqd.2	-	13	2434	c.1879T>A	c.(1879-1881)TTA>ATA	p.L627I	PRKD3_uc002rqe.1_Missense_Mutation_p.L227I	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	627	Protein kinase.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				TTTACCTGTAAAATAGCCACT	0.303													24	26					0	0	0.003330	0	0
MTIF2	4528	broad.mit.edu	37	2	55470693	55470693	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:55470693G>T	uc002ryn.2	-	13	2160	c.1423C>A	c.(1423-1425)CAG>AAG	p.Q475K	MTIF2_uc010yox.1_Missense_Mutation_p.Q144K|MTIF2_uc002ryo.2_Missense_Mutation_p.Q475K	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	475					regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						CGGGCTTTCTGATGTGCTTCT	0.383													42	116					1.00953e-15	1.08674e-15	0.013114	1	0
MTIF2	4528	broad.mit.edu	37	2	55481288	55481288	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:55481288T>C	uc002ryn.2	-	8	1290	c.553A>G	c.(553-555)ATA>GTA	p.I185V	MTIF2_uc010yox.1_Intron|MTIF2_uc002ryo.2_Missense_Mutation_p.I185V	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	185	G-domain.				regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						TGGCCCATTATAGTAACAACT	0.413													13	16					0	0	0.001855	0	0
PELI1	57162	broad.mit.edu	37	2	64321919	64321919	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:64321919G>A	uc002scs.3	-	6	5213	c.1174C>T	c.(1174-1176)CAT>TAT	p.H392Y	PELI1_uc002sct.3_Missense_Mutation_p.H392Y|PELI1_uc002scr.3_Missense_Mutation_p.H213Y	NM_020651	NP_065702	Q96FA3	PELI1_HUMAN	pellino protein	392					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol				ovary(1)	1						CAGGCTGCATGAAAAGTATGA	0.478													18	65					0	0	0.007413	0	0
DYSF	8291	broad.mit.edu	37	2	71827924	71827924	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:71827924G>A	uc002sie.2	+	34	4171	c.3795G>A	c.(3793-3795)CAG>CAA	p.Q1265Q	DYSF_uc010feg.2_Silent_p.Q1296Q|DYSF_uc010feh.2_Silent_p.Q1251Q|DYSF_uc002sig.3_Silent_p.Q1251Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.Q1265Q|DYSF_uc010fef.2_Silent_p.Q1282Q|DYSF_uc010fei.2_Silent_p.Q1282Q|DYSF_uc010fek.2_Silent_p.Q1283Q|DYSF_uc010fej.2_Silent_p.Q1252Q|DYSF_uc010fel.2_Silent_p.Q1252Q|DYSF_uc010feo.2_Silent_p.Q1297Q|DYSF_uc010fem.2_Silent_p.Q1266Q|DYSF_uc010fen.2_Silent_p.Q1283Q|DYSF_uc002sif.2_Silent_p.Q1266Q|DYSF_uc010yqy.1_Silent_p.Q146Q|DYSF_uc010yqz.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1265	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGGGCAGCCAGCCGTCGGGGG	0.617													35	52					0	0	0.004289	0	0
MRPL19	9801	broad.mit.edu	37	2	75879347	75879347	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:75879347G>C	uc002snl.2	+	3	326	c.301G>C	c.(301-303)GAA>CAA	p.E101Q	MRPL19_uc002snm.1_Missense_Mutation_p.E101Q	NM_014763	NP_055578	P49406	RM19_HUMAN	mitochondrial ribosomal protein L19 precursor	101					translation	mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0						AGATATGTTAGAAAGGAGAAA	0.333													7	18					0	0	0.004482	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95515048	95515048	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:95515048C>T	uc010fhp.2	-	4		c.403G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TGGGGTATTACTGTCCTACAA	0.323													4	46					0	0	0.001984	0	0
CNNM4	26504	broad.mit.edu	37	2	97427824	97427824	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:97427824A>T	uc002swx.2	+	1	1186	c.1088A>T	c.(1087-1089)CAG>CTG	p.Q363L		NM_020184	NP_064569	Q6P4Q7	CNNM4_HUMAN	cyclin M4	363					biomineral tissue development|ion transport|response to stimulus|visual perception	integral to membrane|plasma membrane				breast(2)|ovary(1)	3						AATATGATCCAGGGTGCCCTG	0.517													13	30					0	0	0.001855	0	0
SEMA4C	54910	broad.mit.edu	37	2	97532106	97532106	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:97532106G>C	uc002sxh.3	-	3	332	c.172C>G	c.(172-174)CTG>GTG	p.L58V	SEMA4C_uc002sxg.3_Missense_Mutation_p.L111V	NM_017789	NP_060259	Q9C0C4	SEM4C_HUMAN	semaphorin 4C precursor	58	Extracellular (Potential).|Dominant negative effect on myogenic differentiation (By similarity).|Sema.				muscle cell differentiation|nervous system development|positive regulation of stress-activated MAPK cascade	cell junction|integral to membrane|postsynaptic density|postsynaptic membrane|synaptic vesicle membrane	receptor activity			skin(2)	2						GGCTCCGTCAGCGTCAGTGTC	0.657													21	27					0	0	0.008871	0	0
BUB1	699	broad.mit.edu	37	2	111413329	111413329	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:111413329A>G	uc002tgc.2	-	16	1975	c.1863T>C	c.(1861-1863)ATT>ATC	p.I621I	BUB1_uc010yxh.1_Silent_p.I601I|BUB1_uc010fkb.2_Silent_p.I621I	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	621					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		TATCTTCTAAAATGTGCACTG	0.428													24	62					0	0	0.002780	0	0
POTEF	728378	broad.mit.edu	37	2	130877802	130877802	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:130877802T>C	uc010fmh.2	-	3	687	c.287A>G	c.(286-288)AAC>AGC	p.N96S		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	96						cell cortex	ATP binding			skin(3)|ovary(2)	5						GCCCATCTTGTTCCTGAGTGT	0.607													8	246					0	0	0.008291	0	0
NEB	4703	broad.mit.edu	37	2	152534209	152534209	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:152534209T>A	uc010fnx.2	-	34	3835	c.3644A>T	c.(3643-3645)AAA>ATA	p.K1215I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1215	Nebulin 30.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTTTTTAACTTTTTCGACGTC	0.458													59	96					0	0	0.003610	0	0
TANC1	85461	broad.mit.edu	37	2	160027260	160027260	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:160027260G>A	uc002uag.2	+	10	1569	c.1295G>A	c.(1294-1296)TGC>TAC	p.C432Y	TANC1_uc010fol.1_Missense_Mutation_p.C326Y|TANC1_uc010zcm.1_Missense_Mutation_p.C424Y|TANC1_uc010fom.1_Missense_Mutation_p.C238Y	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	432						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						GCCCTGAGCTGCCACGGAAGC	0.483													13	80					0	0	0.002450	0	0
LRP2	4036	broad.mit.edu	37	2	170042231	170042231	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:170042231C>G	uc002ues.2	-	50	9840	c.9627G>C	c.(9625-9627)TTG>TTC	p.L3209F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3209	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTAAATTTCTCAAATAGTAAC	0.418													26	91					0	0	0.005443	0	0
KLHL23	151230	broad.mit.edu	37	2	170605976	170605976	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:170605976G>T	uc002ufh.1	+	6	1749	c.1411G>T	c.(1411-1413)GTC>TTC	p.V471F	KLHL23_uc002ufi.1_Missense_Mutation_p.V471F|uc002ufj.3_5'Flank	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	471	Kelch 5.										0						GCTCTATCTAGTCGGCGGACA	0.383													15	20					4.7546e-09	5.03166e-09	0.004007	1	0
CHN1	1123	broad.mit.edu	37	2	175742609	175742609	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:175742609C>T	uc002uji.2	-	6	1038	c.508G>A	c.(508-510)GAG>AAG	p.E170K	CHN1_uc010zeq.1_Missense_Mutation_p.E170K|CHN1_uc002ujj.2_Intron	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	170					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			GAATCTCTCTCATCATGTGTC	0.413			T	TAF15	extraskeletal myxoid chondrosarcoma								19	67					0	0	0.008871	0	0
OSBPL6	114880	broad.mit.edu	37	2	179238658	179238658	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:179238658A>T	uc002ulx.2	+	15	1815	c.1437A>T	c.(1435-1437)CAA>CAT	p.Q479H	OSBPL6_uc002ulw.2_Missense_Mutation_p.Q412H|OSBPL6_uc002uly.2_Missense_Mutation_p.Q504H|OSBPL6_uc010zfe.1_Missense_Mutation_p.Q448H|OSBPL6_uc002ulz.2_Missense_Mutation_p.Q443H|OSBPL6_uc002uma.2_Missense_Mutation_p.Q483H	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	479					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TATCACAGCAAGTAGCCAATG	0.473													17	47					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179413904	179413904	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:179413904C>G	uc010zfg.1	-	288	84969	c.84745G>C	c.(84745-84747)GAG>CAG	p.E28249Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E21944Q|TTN_uc010zfi.1_Missense_Mutation_p.E21877Q|TTN_uc010zfj.1_Missense_Mutation_p.E21752Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29176							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGACGGGCTCTCTACATTTA	0.473													11	44					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179469033	179469033	+	Splice_Site	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:179469033C>G	uc010zfg.1	-	231	46902	c.46678_splice	c.e231-1	p.I15560_splice	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Splice_Site_p.I9255_splice|TTN_uc010zfi.1_Splice_Site_p.I9188_splice|TTN_uc010zfj.1_Splice_Site_p.I9063_splice	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTCCAGATCTAGAAATTAG	0.333													7	22					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179516201	179516201	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:179516201G>C	uc010zfg.1	-	161	32448	c.32224C>G	c.(32224-32226)CCA>GCA	p.P10742A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11669							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGGCTTCTGGCTTTTTGGGA	0.478													18	38					0	0	0.007413	0	0
ASNSD1	54529	broad.mit.edu	37	2	190530967	190530967	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:190530967C>G	uc002uqt.2	+	4	543	c.109C>G	c.(109-111)CAA>GAA	p.Q37E		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	37	Glutamine amidotransferase type-2.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TAGTAGTAAACAATTGTTAAA	0.383													21	76					0	0	0.010504	0	0
HIBCH	26275	broad.mit.edu	37	2	191175495	191175495	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:191175495G>C	uc002uru.2	-	2	146	c.63C>G	c.(61-63)ACC>ACG	p.T21T	HIBCH_uc002urv.2_Silent_p.T21T	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	21					branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			GGTGCAGTATGGTATTAGTCC	0.328													7	38					0	0	0.004482	0	0
DNAH7	56171	broad.mit.edu	37	2	196729155	196729155	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:196729155A>G	uc002utj.3	-	41	7325	c.7224T>C	c.(7222-7224)TTT>TTC	p.F2408F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2408	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATCTTCCAGAAAAGACTCTT	0.383													10	40					0	0	0.001855	0	0
STK17B	9262	broad.mit.edu	37	2	197002267	197002267	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:197002267C>G	uc002utk.2	-	8	1347	c.1023G>C	c.(1021-1023)GAG>GAC	p.E341D	STK17B_uc010fsh.2_Missense_Mutation_p.E341D	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	341					apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			CTGGGATATTCTCTTTGTCTT	0.423													10	47					0	0	0.006214	0	0
FZD7	8324	broad.mit.edu	37	2	202899735	202899735	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:202899735C>G	uc002uyw.1	+	1	426	c.365C>G	c.(364-366)TCT>TGT	p.S122C		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	122	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						CCGTGTCGTTCTCTGTGCGAG	0.637											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	7					0	0	0.013537	0	0
TRIP12	9320	broad.mit.edu	37	2	230723526	230723526	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:230723526G>C	uc002vpw.1	-	3	972	c.863C>G	c.(862-864)TCA>TGA	p.S288*	TRIP12_uc002vpx.1_Nonsense_Mutation_p.S330*|TRIP12_uc002vpy.1_Intron|TRIP12_uc010zlz.1_RNA|TRIP12_uc010fxh.1_Nonsense_Mutation_p.S288*	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	288					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TCCAGGTTTTGATGTCTCTGA	0.383													8	5					0	0	0.003080	0	0
DGKD	8527	broad.mit.edu	37	2	234368410	234368410	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:234368410C>G	uc002vui.1	+	23	2714	c.2702C>G	c.(2701-2703)ACG>AGG	p.T901R	DGKD_uc002vuj.1_Missense_Mutation_p.T857R|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	901					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	CAGTGTCGCACGGTGAAGATC	0.562													23	80					0	0	0.002780	0	0
PRR21	643905	broad.mit.edu	37	2	240982255	240982255	+	Missense_Mutation	SNP	C	A	A	rs140532642	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:240982255C>A	uc010zod.1	-	1	145	c.145G>T	c.(145-147)GCC>TCC	p.A49S		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	49	Pro-rich.									ovary(1)|skin(1)	2						GGATGAAGGGCCATGGGTGAA	0.582													10	166					4.92774e-30	5.36101e-30	0.004656	1	0
PASK	23178	broad.mit.edu	37	2	242080125	242080125	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:242080125C>T	uc002wao.1	-	3	332	c.240G>A	c.(238-240)CAG>CAA	p.Q80Q	PASK_uc010zol.1_Intron|PASK_uc010zom.1_Silent_p.Q80Q|PASK_uc010fzl.1_Silent_p.Q80Q|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Silent_p.Q80Q	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	80					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		TACAAATATTCTGGGCAGCCA	0.557													21	50					0	0	0.012319	0	0
SIRPB2	284759	broad.mit.edu	37	20	1460691	1460691	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:1460691G>A	uc002wfg.2	-	2	333	c.105C>T	c.(103-105)AGC>AGT	p.S35S	SIRPB2_uc002wfh.3_Silent_p.S35S|SIRPB2_uc010zpr.1_5'UTR	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	35	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane					0						AGTCATTCCTGCTGCTCTGCC	0.532													4	21					0	0	0.009096	0	0
JAG1	182	broad.mit.edu	37	20	10639235	10639235	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:10639235T>C	uc002wnw.2	-	4	1091	c.575A>G	c.(574-576)TAT>TGT	p.Y192C		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	192	Extracellular (Potential).|DSL.				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						GCCAAAGCCATAGTAGTAGTC	0.532									Alagille_Syndrome				29	14					0	0	0.008361	0	0
RIN2	54453	broad.mit.edu	37	20	19970893	19970893	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:19970893A>C	uc002wro.1	+	8	2042	c.2006A>C	c.(2005-2007)AAG>ACG	p.K669T	RIN2_uc010gcu.1_Missense_Mutation_p.K236T|RIN2_uc010gcv.1_Missense_Mutation_p.K463T	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	669	VPS9.				endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						TCGCCGGAAAAGAAGGTCATG	0.557													13	8					0	0	0.003163	0	0
FAM182B	728882	broad.mit.edu	37	20	25848650	25848650	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:25848650C>T	uc002wvd.1	-	1		c.137G>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ccccggactccgcctggggtt	0													3	4					0	0	0.000602	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33422022	33422022	+	RNA	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:33422022T>G	uc002xax.2	-	1		c.244A>C				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						tcaaactccttacctcaggtg	0.06													4	26					0	0	0.004482	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33422063	33422063	+	RNA	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:33422063A>G	uc002xax.2	-	1		c.203T>C				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						caaagtgctgagattacaggc	0.139													6	47					0	0	0.007413	0	0
DSN1	79980	broad.mit.edu	37	20	35396428	35396428	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:35396428T>C	uc010gfr.2	-	4	746	c.373A>G	c.(373-375)AGT>GGT	p.S125G	DSN1_uc002xfz.2_Missense_Mutation_p.S125G|DSN1_uc002xfy.3_5'UTR|DSN1_uc002xga.2_Missense_Mutation_p.S125G|DSN1_uc010zvs.1_Missense_Mutation_p.S18G|DSN1_uc002xgc.2_Missense_Mutation_p.S109G|DSN1_uc002xgb.2_Missense_Mutation_p.S109G	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	125					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				AAATCGACACTGATAGACCGG	0.398													10	126					0	0	0.008291	0	0
ZNFX1	57169	broad.mit.edu	37	20	47865030	47865030	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:47865030C>G	uc002xui.2	-	14	4778	c.4531G>C	c.(4531-4533)GTG>CTG	p.V1511L		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1511							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CAGGGTTCCACGCAGGGACTA	0.587													6	100					0	0	0.001168	0	0
CBLN4	140689	broad.mit.edu	37	20	54579007	54579007	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:54579007G>A	uc002xxa.2	-	1	1006	c.221C>T	c.(220-222)TCG>TTG	p.S74L		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	74	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			CCGCACCGCCGAGAAGGCGAC	0.642													13	94					0	0	0.013537	0	0
RAB22A	57403	broad.mit.edu	37	20	56929213	56929213	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:56929213G>C	uc002xyz.2	+	6	641	c.379G>C	c.(379-381)GAA>CAA	p.E127Q		NM_020673	NP_065724	Q9UL26	RB22A_HUMAN	RAS-related protein RAB-22A	127					endocytosis|endosome organization|protein transport|small GTPase mediated signal transduction	early endosome|endosome membrane|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_epithelial(3;5.09e-14)|Lung NSC(12;0.000122)|all_lung(29;0.00042)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;4.73e-08)|all cancers(14;4.83e-07)			GCCTTCCAGAGAAGTCATGGA	0.398													3	7					0	0	0.009096	0	0
NPEPL1	79716	broad.mit.edu	37	20	57268820	57268820	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:57268820A>G	uc010zzs.1	+	2	273	c.178A>G	c.(178-180)AAC>GAC	p.N60D	NPEPL1_uc010zzr.1_Missense_Mutation_p.N12D|NPEPL1_uc002xzn.2_RNA|NPEPL1_uc010gjo.1_Missense_Mutation_p.N32D|NPEPL1_uc002xzp.2_5'UTR	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	aminopeptidase-like 1	60					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity				0	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			GAGCACGCTCAACCCCAACCC	0.662													20	130					0	0	0.010504	0	0
RGS19	10287	broad.mit.edu	37	20	62708228	62708228	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:62708228C>T	uc002yhy.2	-	2	279	c.12G>A	c.(10-12)CCG>CCA	p.P4P	RGS19_uc002yhz.2_Intron|RGS19_uc002yia.2_Silent_p.P4P|RGS19_uc002yib.2_Silent_p.P4P	NM_005873	NP_005864	P49795	RGS19_HUMAN	G protein signalling regulator 19	4					autophagy|G-protein coupled receptor protein signaling pathway|negative regulation of signal transduction|small GTPase mediated signal transduction	Golgi apparatus|membrane fraction|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			skin(1)	1	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CAGCCTCATGCGGGGTGGGCA	0.672													4	18					0	0	0.009096	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798115	31798115	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31798115T>G	uc002yob.1	-	1	116	c.116A>C	c.(115-117)GAC>GCC	p.D39A		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	39						intermediate filament				ovary(1)|lung(1)	2						AGAGCAGAGGTCAGTGCTGTA	0.582													79	396					0	0	0.003610	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802676	31802676	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31802676G>A	uc011acw.1	+	1	83	c.83G>A	c.(82-84)AGC>AAC	p.S28N		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	28						intermediate filament					0						TACCCCAGCAGCCTGGTCTAC	0.602													27	319					0	0	0.005443	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802694	31802694	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31802694C>A	uc011acw.1	+	1	101	c.101C>A	c.(100-102)GCC>GAC	p.A34D		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	34						intermediate filament					0						TACAGCACTGCCCTCTGCTCT	0.602													14	304					1.05317e-09	1.11664e-09	0.002450	1	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802723	31802723	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31802723C>G	uc011acw.1	+	1	130	c.130C>G	c.(130-132)CGT>GGT	p.R44G		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	44	1.|4 X 10 AA approximate repeats.					intermediate filament					0						CTGCCAGCTGCGTTCCTCTCT	0.637													12	347					0	0	0.013537	0	0
DYRK1A	1859	broad.mit.edu	37	21	38862532	38862532	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:38862532G>A	uc002ywk.2	+	6	795	c.720G>A	c.(718-720)ATG>ATA	p.M240I	DYRK1A_uc002ywi.2_Missense_Mutation_p.M240I|DYRK1A_uc002ywj.2_Missense_Mutation_p.M231I|DYRK1A_uc002ywl.2_Missense_Mutation_p.M240I|DYRK1A_uc002ywm.2_Missense_Mutation_p.M240I|DYRK1A_uc011aei.1_Missense_Mutation_p.M1I	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	240	Protein kinase.				nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						TTTTTGAAATGCTGTCCTACA	0.378													5	24					0	0	0.000602	0	0
ETS2	2114	broad.mit.edu	37	21	40182009	40182009	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:40182009C>T	uc002yxg.2	+	2	247	c.51C>T	c.(49-51)AAC>AAT	p.N17N	ETS2_uc002yxf.2_Silent_p.N157N	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	17					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				CTGTGGCTAACAGTTACAGAG	0.308													4	17					0	0	0.009096	0	0
DSCAM	1826	broad.mit.edu	37	21	41514548	41514548	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:41514548C>T	uc002yyq.1	-	18	3795	c.3343G>A	c.(3343-3345)GAA>AAA	p.E1115K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1115	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTCAAGGCTTCCTTGGAAAGT	0.463													5	69					0	0	0.000602	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959763	45959763	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45959763T>C	uc002zfh.1	-	1	316	c.271A>G	c.(271-273)ACC>GCC	p.T91A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	91	6.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						ggggaggaggtgcagcaagcc	0.328													7	76					0	0	0.006122	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45971146	45971146	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45971146C>G	uc002zfi.1	-	1	243	c.196G>C	c.(196-198)GCC>CCC	p.A66P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	66	22 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)	1						GATTGGCAGGCGCTGGGCTCA	0.706													5	87					0	0	0.002780	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994283	45994284	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994283_45994284GG>AA	uc002zfk.1	+	1	678_679	c.648_649GG>AA	c.(646-651)CCGGCT>CCAACT	p.A217T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	217	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTGCCAGCCGGCTTGCTGCAC	0.653													11	380					0	0	0.004672	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994293	45994293	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994293A>G	uc002zfk.1	+	1	688	c.658A>G	c.(658-660)ACC>GCC	p.T220A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	220	36 X 5 AA repeats of C-C-X(3).|19.					keratin filament					0						GGCTTGCTGCACCTCCTCCTC	0.647													13	407					0	0	0.012319	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994368	45994368	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994368G>A	uc002zfk.1	+	1	763	c.733G>A	c.(733-735)GAG>AAG	p.E245K	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	245	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGTGTGCTCTGAGGATTCCTC	0.637													13	437					0	0	0.001855	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994394	45994394	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994394G>T	uc002zfk.1	+	1	789	c.759G>T	c.(757-759)CAG>CAT	p.Q253H	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	253	36 X 5 AA repeats of C-C-X(3).|23.					keratin filament					0						GCTGCCAGCAGTCTAGCTGCC	0.632													23	416					7.92952e-12	8.47924e-12	0.003954	1	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994409	45994409	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994409G>A	uc002zfk.1	+	1	804	c.774G>A	c.(772-774)CCG>CCA	p.P258P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	258	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTGCCAGCCGGCTTGCTGCA	0.622													13	586					0	0	0.003610	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994442	45994442	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994442T>C	uc002zfk.1	+	1	837	c.807T>C	c.(805-807)GCT>GCC	p.A269A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	269	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCCAGCAGGCTTGCTGTGTGC	0.612													17	605					0	0	0.005443	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994613	45994613	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45994613G>C	uc002zfk.1	+	1	1008	c.978G>C	c.(976-978)GTG>GTC	p.V326V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	326	36 X 5 AA repeats of C-C-X(3).|30.					keratin filament					0						GCAAGCCTGTGAGCTGTGTGC	0.622													45	695					0	0	0.003610	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999841	45999841	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:45999841A>G	uc002zfl.1	-	1	641	c.615T>C	c.(613-615)TGT>TGC	p.C205C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	205	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						AAGCCGGCTGACAGCTAGACT	0.632													28	854					0	0	0.009718	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000218	46000219	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46000218_46000219CG>TA	uc002zfl.1	-	1	263_264	c.237_238CG>TA	c.(235-240)TGCGCC>TGTACC	p.A80T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	80	4.|22 X 5 AA repeats of C-C-X(3).					keratin filament					0						ggggaggaggcgcagcaagccg	0.297													15	461					0	0	0.004672	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000259	46000259	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46000259G>A	uc002zfl.1	-	1	223	c.197C>T	c.(196-198)ACC>ATC	p.T66I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	66	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						gcaggAGCTGGTGCAGCCTGA	0.368													14	275					0	0	0.003163	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000292	46000292	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46000292G>A	uc002zfl.1	-	1	190	c.164C>T	c.(163-165)GCC>GTC	p.A55V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	55	22 X 5 AA repeats of C-C-X(3).|2.					keratin filament					0						GGGCTCACAGGCCGCCTGGCA	0.488													23	251					0	0	0.003954	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012355	46012355	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46012355G>C	uc002zfm.2	-	1	32	c.11C>G	c.(10-12)TCC>TGC	p.S4C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	4						keratin filament					0						GGACATGGTGGACGCGGCCAT	0.632													9	249					0	0	0.006214	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021185	46021185	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46021185G>A	uc002zfn.3	+	2	674	c.649G>A	c.(649-651)GCT>ACT	p.A217T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	222	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGCCAGCCGGCTTGCTGCAC	0.662													11	294					0	0	0.006122	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021229	46021229	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46021229T>C	uc002zfn.3	+	2	718	c.693T>C	c.(691-693)CCT>CCC	p.P231P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	236	30 X 5 AA repeats of C-C-X(3).|17.					keratin filament					0						GCTGTGTGCCTGTCTGCTGCA	0.652													18	498					0	0	0.009535	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021491	46021491	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:46021491C>T	uc002zfn.3	+	2	980	c.955C>T	c.(955-957)CCC>TCC	p.P319S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	324	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGTGTGCAGGCCCACCTGCTG	0.697													20	226					0	0	0.006320	0	0
S100B	6285	broad.mit.edu	37	21	48019347	48019347	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:48019347C>T	uc002zju.1	-	3	319	c.208G>A	c.(208-210)GAC>AAC	p.D70N	S100B_uc002zjv.1_3'UTR	NM_006272	NP_006263	P04271	S100B_HUMAN	S100 calcium-binding protein, beta	70	2; high affinity.|EF-hand 2.				axonogenesis|cell proliferation|central nervous system development|innate immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade	extracellular region|nucleus|perinuclear region of cytoplasm|ruffle	calcium ion binding|calcium-dependent protein binding|protein homodimerization activity|RAGE receptor binding|S100 beta binding|tau protein binding|zinc ion binding				0	Breast(49;0.247)	Lung NSC(3;0.245)		OV - Ovarian serous cystadenocarcinoma(3;1.84e-06)|Epithelial(3;4.45e-06)|all cancers(3;2.07e-05)|Colorectal(79;0.241)		TCCTGGAAGTCACATTCGCCG	0.458													15	45					0	0	0.007413	0	0
POTEH	23784	broad.mit.edu	37	22	16287511	16287511	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:16287511G>A	uc010gqp.2	-	1	427	c.375C>T	c.(373-375)GAC>GAT	p.D125D	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_Intron	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	125										skin(1)	1						TCATAGCAGAGTCGTCGTGGT	0.612													9	307					0	0	0.013537	0	0
LOC96610	96610	broad.mit.edu	37	22	23006960	23006960	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:23006960C>T	uc011aim.1	+	119		c.7563C>T								Parts of antibodies, mostly variable regions.												0						GGGCTCTGCTCCTCCTCACCC	0.627													4	8					0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	23055618	23055618	+	RNA	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:23055618G>T	uc011aim.1	+	153		c.9333G>T								Parts of antibodies, mostly variable regions.												0						CTGACCATCAGCAGGGTCGAA	0.577													4	25					0.00909568	0.00928535	0.009096	1	0
AP1B1	162	broad.mit.edu	37	22	29755870	29755870	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:29755870C>T	uc003afj.2	-	4	406	c.222G>A	c.(220-222)ATG>ATA	p.M74I	AP1B1_uc003afi.2_Missense_Mutation_p.M74I|AP1B1_uc003afk.2_Missense_Mutation_p.M74I|AP1B1_uc003afl.2_Missense_Mutation_p.M74I	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	74					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						TGGCGTAATTCATCAAGTAGA	0.522											OREG0026449	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	42					0	0	0.007413	0	0
NEFH	4744	broad.mit.edu	37	22	29885501	29885501	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:29885501A>G	uc003afo.2	+	4	1943	c.1872A>G	c.(1870-1872)GAA>GAG	p.E624E	NEFH_uc003afp.2_Intron	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	624	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.				cell death|nervous system development	neurofilament					0						CAGTGAAGGAAGAAGCAAAAT	0.463													6	139					0	0	0.010729	0	0
NEFH	4744	broad.mit.edu	37	22	29885828	29885828	+	Silent	SNP	C	T	T	rs144895799		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:29885828C>T	uc003afo.2	+	4	2270	c.2199C>T	c.(2197-2199)CCC>CCT	p.P733P	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	739	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.				cell death|nervous system development	neurofilament					0						CAAAGACCCCCGAGAAGGCCA	0.542													10	264					0	0	0.001855	0	0
DRG1	4733	broad.mit.edu	37	22	31819365	31819365	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:31819365G>A	uc003aku.2	+	6	813	c.682G>A	c.(682-684)GAT>AAT	p.D228N		NM_004147	NP_004138	Q9Y295	DRG1_HUMAN	developmentally regulated GTP binding protein 1	228					multicellular organismal development|transcription, DNA-dependent	cytoplasm|intermediate filament cytoskeleton|nucleus	GTP binding|transcription factor binding			central_nervous_system(1)	1						TGCTACAGCTGATGACCTCAT	0.473													6	50					0	0	0.001984	0	0
HMGXB4	10042	broad.mit.edu	37	22	35659182	35659182	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:35659182C>G	uc003anl.2	+	3	317	c.143C>G	c.(142-144)GCT>GGT	p.A48G	HMGXB4_uc011amh.1_5'UTR|HMGXB4_uc003ank.2_5'UTR	NM_001003681	NP_001003681	Q9UGU5	HMGX4_HUMAN	high-mobility group protein 2-like 1	48					endosome to lysosome transport|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	NURF complex	DNA binding			breast(1)|skin(1)	2						GAAGAAATTGCTGCTCAGGTC	0.383													4	29					0	0	0.009096	0	0
APOL6	80830	broad.mit.edu	37	22	36055619	36055619	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:36055619C>G	uc003aoe.2	+	3	1302	c.1008C>G	c.(1006-1008)GTC>GTG	p.V336V	APOL6_uc003aod.2_RNA	NM_030641	NP_085144	Q9BWW8	APOL6_HUMAN	apolipoprotein L6	336					lipoprotein metabolic process	cytoplasm|extracellular region	lipid binding|lipid transporter activity				0						gtctgtgtgtctgtgtgtatg	0.413													9	40					0	0	0.004007	0	0
NCF4	4689	broad.mit.edu	37	22	37266516	37266516	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:37266516C>A	uc003apy.3	+	5	586	c.402C>A	c.(400-402)TAC>TAA	p.Y134*	NCF4_uc003apz.3_Nonsense_Mutation_p.Y134*	NM_000631	NP_000622	Q15080	NCF4_HUMAN	neutrophil cytosolic factor 4 isoform 1	134	PX.				cell communication|immune response|oxidation-reduction process	cytosol|NADPH oxidase complex	phosphatidylinositol binding|protein dimerization activity			ovary(1)	1						TCTTCTTTTACCAGTCGCCCT	0.637													21	28					1.10513e-12	1.184e-12	0.002299	1	0
TRIOBP	11078	broad.mit.edu	37	22	38120006	38120006	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:38120006T>C	uc003atr.2	+	7	1714	c.1443T>C	c.(1441-1443)TGT>TGC	p.C481C	TRIOBP_uc003atu.2_Silent_p.C309C|TRIOBP_uc003atq.1_Silent_p.C481C|TRIOBP_uc003ats.1_Silent_p.C309C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	481					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGTGCCCAGCGGG	0.592													59	181					0	0	0.003610	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120676	38120676	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:38120676G>A	uc003atr.2	+	7	2384	c.2113G>A	c.(2113-2115)GAT>AAT	p.D705N	TRIOBP_uc003atu.2_Missense_Mutation_p.D533N|TRIOBP_uc003atq.1_Missense_Mutation_p.D705N|TRIOBP_uc003ats.1_Missense_Mutation_p.D533N	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	705					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCAACGGGACGATCCCAGAGC	0.582													9	343					0	0	0.003163	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120707	38120707	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:38120707C>T	uc003atr.2	+	7	2415	c.2144C>T	c.(2143-2145)ACC>ATC	p.T715I	TRIOBP_uc003atu.2_Missense_Mutation_p.T543I|TRIOBP_uc003atq.1_Missense_Mutation_p.T715I|TRIOBP_uc003ats.1_Missense_Mutation_p.T543I	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	715				RTTQQEN -> KSTFGCL (in Ref. 7; BAB33332).	actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AACAGAACCACCCAACAAGAG	0.577													12	325					0	0	0.002299	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120824	38120824	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:38120824C>T	uc003atr.2	+	7	2532	c.2261C>T	c.(2260-2262)CCC>CTC	p.P754L	TRIOBP_uc003atu.2_Missense_Mutation_p.P582L|TRIOBP_uc003atq.1_Missense_Mutation_p.P754L|TRIOBP_uc003ats.1_Missense_Mutation_p.P582L	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	754					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CGGGACAATCCCAGAGCCTCC	0.562													7	256					0	0	0.003163	0	0
SOX10	6663	broad.mit.edu	37	22	38369886	38369886	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:38369886G>A	uc003aun.1	-	4	1295	c.1017C>T	c.(1015-1017)GGC>GGT	p.G339G	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.G339G	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	339						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					GCAGAGCCACGCCTGGTGGCT	0.677													21	39					0	0	0.008871	0	0
GTSE1	51512	broad.mit.edu	37	22	46704589	46704589	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr22:46704589A>G	uc011aqy.1	+	4	723	c.511A>G	c.(511-513)AGC>GGC	p.S171G	GTSE1_uc011aqz.1_Missense_Mutation_p.S18G	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	152					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		CCTGTCAGACAGCCCCTTGCT	0.577													50	134					0	0	0.003610	0	0
CCDC13	152206	broad.mit.edu	37	3	42777385	42777385	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:42777385C>G	uc003cly.3	-	10	1269	c.1185G>C	c.(1183-1185)CAG>CAC	p.Q395H		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	395	Potential.									ovary(1)	1						CTAGGATCTCCTGTAGCTGCT	0.632													3	9					0	0	0.004672	0	0
TGM4	7047	broad.mit.edu	37	3	44951664	44951665	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:44951664_44951665GA>TT	uc003coc.3	+	11	1483_1484	c.1410_1411GA>TT	c.(1408-1413)GAGAAC>GATTAC	p.470_471EN>DY		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	470_471					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CTGTAAAAGAGAACTTTCTTCA	0.475													4	26					0	0	0.004672	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443													9	97					0	0	0.002450	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448													9	99					0	0	0.003163	0	0
SEMA3B	7869	broad.mit.edu	37	3	50310965	50310965	+	Splice_Site	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:50310965G>T	uc003cyu.2	+	10	1053	c.811_splice	c.e10-1	p.N271_splice	SEMA3B_uc003cyt.2_Splice_Site_p.N271_splice|SEMA3B_uc003cyv.2_Splice_Site_p.N158_splice|SEMA3B_uc003cyw.2_Splice_Site|SEMA3B_uc010hli.2_Splice_Site_p.N158_splice|SEMA3B_uc003cyx.2_Splice_Site_p.N158_splice|SEMA3B_uc003cyy.2_Splice_Site|SEMA3B_uc011bdo.1_Splice_Site	NM_004636	NP_004627	Q13214	SEM3B_HUMAN	semaphorin 3B isoform 1 precursor						axon guidance|cell-cell signaling	endoplasmic reticulum|extracellular region|membrane	receptor activity			lung(2)|central_nervous_system(2)|kidney(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CGTCCCGGCAGAACGACGTGG	0.692											OREG0015583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	32					0.000602214	0.000619263	0.000602	1	0
PRICKLE2	166336	broad.mit.edu	37	3	64084967	64084967	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:64084967C>T	uc003dmf.2	-	8	2881	c.2295G>A	c.(2293-2295)TGG>TGA	p.W765*		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	765						cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		AGTAGGGTCCCCAGCGGTCCC	0.602													9	10					0	0	0.004482	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596430	97596430	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:97596430C>G	uc003drx.2	+	1	612	c.548C>G	c.(547-549)TCA>TGA	p.S183*		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						CAGTCAGTGTCAGAACGTTTA	0.448													6	59					0	0	0.001168	0	0
KIAA2018	205717	broad.mit.edu	37	3	113377606	113377606	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:113377606C>G	uc003eam.2	-	7	3334	c.2923G>C	c.(2923-2925)GAG>CAG	p.E975Q	KIAA2018_uc003eal.2_Missense_Mutation_p.E919Q	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	975					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						ATTTCTACCTCAGAAACACAG	0.408													6	50					0	0	0.001984	0	0
GOLGB1	2804	broad.mit.edu	37	3	121388133	121388133	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:121388133C>T	uc003eei.3	-	18	9358	c.9232G>A	c.(9232-9234)GAG>AAG	p.E3078K	GOLGB1_uc010hrc.2_Missense_Mutation_p.E3083K|GOLGB1_uc003eej.3_Missense_Mutation_p.E3044K	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	3078	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TGCTGGTTCTCACGAAGACTC	0.483													26	53					0	0	0.005443	0	0
ZNF148	7707	broad.mit.edu	37	3	124952316	124952316	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:124952316T>A	uc003ehx.3	-	9	1740	c.1254A>T	c.(1252-1254)GAA>GAT	p.E418D	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.E418D|ZNF148_uc010hsa.2_Missense_Mutation_p.E418D|ZNF148_uc003eia.3_Missense_Mutation_p.E418D|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	418					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						CTTTGCTCTCTTCATATGTGG	0.368													13	39					0	0	0.013537	0	0
ZNF148	7707	broad.mit.edu	37	3	125032198	125032198	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:125032198G>C	uc003ehx.3	-	4	773	c.287C>G	c.(286-288)ACA>AGA	p.T96R	ZNF148_uc003ehz.3_Missense_Mutation_p.T96R|ZNF148_uc010hsa.2_Missense_Mutation_p.T96R|ZNF148_uc003eia.3_Missense_Mutation_p.T96R|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	96					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TCTTTCATGTGTTTCCATCTG	0.343													4	72					0	0	0.009096	0	0
ABTB1	80325	broad.mit.edu	37	3	127395140	127395140	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:127395140G>A	uc003ejt.2	+	5	434	c.346G>A	c.(346-348)GAC>AAC	p.D116N	ABTB1_uc003ejr.2_5'UTR|ABTB1_uc003ejs.2_Missense_Mutation_p.D91N|ABTB1_uc003eju.2_5'UTR|ABTB1_uc010hsm.2_5'Flank	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	116	BTB 1.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						CATCCACAGTGACGTGGTCTT	0.582													33	176					0	0	0.003271	0	0
IFT122	55764	broad.mit.edu	37	3	129170834	129170834	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:129170834G>A	uc003emm.2	+	3	392	c.186G>A	c.(184-186)GCG>GCA	p.A62A	IFT122_uc003eml.2_Silent_p.A62A|IFT122_uc003emn.2_Silent_p.A62A|IFT122_uc003emo.2_Silent_p.A62A|IFT122_uc003emp.2_5'UTR|IFT122_uc010htc.2_Silent_p.A62A|IFT122_uc011bky.1_5'UTR|IFT122_uc003emq.2_Silent_p.A62A|IFT122_uc011bkx.1_Silent_p.A62A	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	62	WD 2.				camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TGGCATATGCGAAGGATGGTA	0.408													12	67					0	0	0.003163	0	0
KY	339855	broad.mit.edu	37	3	134322784	134322784	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:134322784C>G	uc010hty.2	-	11	1685	c.1623G>C	c.(1621-1623)AAG>AAC	p.K541N	KY_uc011blw.1_3'UTR|KY_uc011blx.1_Missense_Mutation_p.K520N	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	541						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						GTTCCTGCCTCTTCTTGACAA	0.522													9	57					0	0	0.006214	0	0
FOXL2	668	broad.mit.edu	37	3	138664558	138664558	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:138664558G>T	uc003esw.2	-	1	1425	c.1007C>A	c.(1006-1008)GCG>GAG	p.A336E	uc003esv.1_5'Flank|C3orf72_uc003esx.1_5'Flank|C3orf72_uc011bmr.1_5'Flank	NM_023067	NP_075555	P58012	FOXL2_HUMAN	forkhead box L2	336					convergent extension|DNA fragmentation involved in apoptotic nuclear change|embryonic eye morphogenesis|extraocular skeletal muscle development|female somatic sex determination|induction of apoptosis|menstruation|negative regulation of transcription, DNA-dependent|ovarian follicle development|pattern specification process|positive regulation of caspase activity|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	caspase regulator activity|DNA bending activity|double-stranded DNA binding|estrogen receptor binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|ubiquitin conjugating enzyme binding			ovary(266)|large_intestine(1)|skin(1)	268						ACTGGTGggcgcgggcgccgg	0.323			Mis		granulosa-cell tumour of the ovary		Blepharophimosis|ptosis and epicanthus inversus Types I|II; Premature ovarian failure type III						8	12					5.18039e-06	5.41106e-06	0.003080	1	0
RNF7	9616	broad.mit.edu	37	3	141464073	141464073	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:141464073G>C	uc003eud.2	+	3	429	c.296G>C	c.(295-297)TGC>TCC	p.C99S	RNF7_uc003euc.2_3'UTR|RNF7_uc003eue.2_RNA	NM_014245	NP_055060	Q9UBF6	RBX2_HUMAN	ring finger protein 7 isoform 1	99	RING-type.	Zinc 2 (By similarity).			anti-apoptosis|induction of apoptosis by oxidative stress|protein neddylation|response to redox state	cytoplasm|nucleus	copper ion binding|NEDD8 ligase activity|protein binding|zinc ion binding				0						AACAATCGCTGCCCTCTCTGC	0.488													17	15					0	0	0.008871	0	0
ATR	545	broad.mit.edu	37	3	142231288	142231288	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:142231288G>C	uc003eux.3	-	27	4788	c.4666C>G	c.(4666-4668)CTA>GTA	p.L1556V		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1556					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCATGCTTTAGAACTGCCATA	0.328								Other_conserved_DNA_damage_response_genes					7	24					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	3	161147012	161147012	+	IGR	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:161147012T>G								C3orf57 (57141 upstream) : OTOL1 (67584 downstream)																							AATCAGGATGTTGACCTTGGC	0.438													12	53					0	0	0.013537	0	0
ZBBX	79740	broad.mit.edu	37	3	167083738	167083738	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:167083738C>T	uc003fep.2	-	6	532	c.209G>A	c.(208-210)GGA>GAA	p.G70E	ZBBX_uc011bpc.1_Missense_Mutation_p.G70E|ZBBX_uc003feq.2_Missense_Mutation_p.G41E	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	70						intracellular	zinc ion binding			ovary(2)	2						GCCCACTTTTCCAGATTTCCA	0.289													8	43					0	0	0.008291	0	0
DVL3	1857	broad.mit.edu	37	3	183887805	183887805	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:183887805C>T	uc003fms.2	+	14	1650	c.1510C>T	c.(1510-1512)CTG>TTG	p.L504L	DVL3_uc011bqw.1_Silent_p.L487L|DVL3_uc003fmt.2_Silent_p.L175L|DVL3_uc003fmu.2_Silent_p.L336L	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	504					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CATGGCCAACCTGTCTCTCCA	0.647													15	94					0	0	0.003163	0	0
TPRG1	285386	broad.mit.edu	37	3	188956639	188956639	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:188956639G>C	uc003frv.1	+	9	1647	c.420G>C	c.(418-420)CTG>CTC	p.L140L	TPRG1_uc003frw.1_Silent_p.L140L	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	140											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		GGATTCCTCTGAGCGCTGTCT	0.488													6	66					0	0	0.003080	0	0
RNF168	165918	broad.mit.edu	37	3	196198875	196198875	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:196198875C>G	uc003fwq.2	-	6	2069	c.1531G>C	c.(1531-1533)GAG>CAG	p.E511Q	RNF168_uc010iah.2_Missense_Mutation_p.E344Q|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	511					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		GAGCCTCTCTCTGGTGTTGGA	0.433													18	294					0	0	0.006122	0	0
ZNF876P	642280	broad.mit.edu	37	4	247456	247456	+	RNA	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:247456C>G	uc010iba.2	+	2		c.290C>G				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						GAAGAATTTACAATTAAGGAA	0.363													6	80					0	0	0.001984	0	0
ZNF876P	642280	broad.mit.edu	37	4	247464	247464	+	RNA	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:247464G>A	uc010iba.2	+	2		c.298G>A				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						TACAATTAAGGAAAGGCTCTA	0.368													9	74					0	0	0.006214	0	0
MRFAP1	93621	broad.mit.edu	37	4	6642972	6642972	+	Nonstop_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:6642972G>C	uc003gjg.1	+	2	1036	c.383G>C	c.(382-384)TGA>TCA	p.*128S	MRFAP1_uc003gjh.1_Nonstop_Mutation_p.*128S	NM_033296	NP_150638	Q9Y605	MOFA1_HUMAN	Mof4 family associated protein 1	128						nucleus|perinuclear region of cytoplasm	protein binding				0						GAGTCGTCGTGAGCGCGGTCG	0.632													34	131					0	0	0.003755	0	0
SH3TC1	54436	broad.mit.edu	37	4	8230031	8230031	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:8230031C>T	uc003gkv.3	+	12	2711	c.2610C>T	c.(2608-2610)GCC>GCT	p.A870A	SH3TC1_uc003gkw.3_Silent_p.A794A|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	870	TPR 5.						binding			large_intestine(2)|pancreas(1)	3						ACATGGTGGCCGTGGCTCTGA	0.672													20	43					0	0	0.008871	0	0
ANAPC4	29945	broad.mit.edu	37	4	25415344	25415344	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:25415344C>T	uc003gro.2	+	22	1732	c.1603C>T	c.(1603-1605)CAG>TAG	p.Q535*	ANAPC4_uc003grp.2_Nonsense_Mutation_p.Q421*|ANAPC4_uc003grq.2_5'UTR	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	535					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				TATTATTGATCAGTGTTTGCA	0.338													10	19					0	0	0.006214	0	0
REST	5978	broad.mit.edu	37	4	57797217	57797217	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:57797217G>A	uc003hch.2	+	4	2540	c.2193G>A	c.(2191-2193)ATG>ATA	p.M731I	REST_uc003hci.2_Missense_Mutation_p.M731I|REST_uc010ihf.2_Missense_Mutation_p.M405I	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	731	Pro-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					CTGTTCAGATGGAGCTGTCTC	0.562													8	191					0	0	0.013537	0	0
EPHA5	2044	broad.mit.edu	37	4	66270136	66270136	+	Silent	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:66270136T>A	uc003hcy.2	-	8	1939	c.1746A>T	c.(1744-1746)GGA>GGT	p.G582G	EPHA5_uc003hcx.2_Silent_p.G514G|EPHA5_uc003hcz.2_Silent_p.G582G|EPHA5_uc011cah.1_Silent_p.G583G|EPHA5_uc011cai.1_Silent_p.G583G|EPHA5_uc003hda.2_Silent_p.G583G	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	582	Helical; (Potential).		G -> E (in a lung adenocarcinoma sample; somatic mutation).		cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity	p.G582E(1)		lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						ACAAAATGACTCCCACTGTCA	0.473										TSP Lung(17;0.13)			18	26					0	0	0.008871	0	0
UGT2B10	7365	broad.mit.edu	37	4	69683878	69683878	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69683878G>A	uc003hee.2	+	2	875	c.850G>A	c.(850-852)GCC>ACC	p.A284T	UGT2B10_uc011cam.1_Missense_Mutation_p.A200T	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	284					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CTGCAAACCTGCCAAACCCCT	0.373													8	233					0	0	0.006214	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885558	69885558	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885558C>T	uc011cao.1	-	4	567	c.431G>A	c.(430-432)AGG>AAG	p.R144K	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	181					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TCCACTGTGCCTTTCAAATGA	0.423													19	316					0	0	0.012319	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885565	69885565	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885565A>G	uc011cao.1	-	4	560	c.424T>C	c.(424-426)TTT>CTT	p.F142L	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	179					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGCCTTTCAAATGAGTAGCCA	0.418													21	353					0	0	0.003954	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885568	69885568	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885568A>T	uc011cao.1	-	4	557	c.421T>A	c.(421-423)TCA>ACA	p.S141T	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	178					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CTTTCAAATGAGTAGCCAGGA	0.423													24	369					0	0	0.006320	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885580	69885580	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885580T>A	uc011cao.1	-	4	545	c.409A>T	c.(409-411)AGT>TGT	p.S137C	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	174					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TAGCCAGGAGTGAAGCTGTGA	0.413													20	418					0	0	0.002299	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885719	69885719	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885719T>C	uc011cao.1	-	4	406	c.270A>G	c.(268-270)AAA>AAG	p.K90K	UGT2B10_uc011can.1_Silent_p.K90K			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	127					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AAACTACATCTTTACAGAAGT	0.323													6	48					0	0	0.001168	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885951	69885951	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885951T>A	uc011cao.1	-	2	154	c.18A>T	c.(16-18)AAA>AAT	p.K6N	UGT2B10_uc011can.1_Missense_Mutation_p.K6N			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	43					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GAACAAGTTCTTTCAGGATTG	0.443													16	450					0	0	0.002299	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885953	69885953	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885953T>C	uc011cao.1	-	2	152	c.16A>G	c.(16-18)AAA>GAA	p.K6E	UGT2B10_uc011can.1_Missense_Mutation_p.K6E			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	43					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ACAAGTTCTTTCAGGATTGTC	0.448													18	444					0	0	0.002780	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885966	69885966	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885966C>T	uc011cao.1	-	2	139	c.3G>A	c.(1-3)ATG>ATA	p.M1I	UGT2B10_uc011can.1_Missense_Mutation_p.M1I			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	38					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GGATTGTCTTCATATTCATCC	0.453													21	462					0	0	0.010504	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885968	69885968	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69885968T>C	uc011cao.1	-	2	137	c.1A>G	c.(1-3)ATG>GTG	p.M1V	UGT2B10_uc011can.1_Missense_Mutation_p.M1V			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	38					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ATTGTCTTCATATTCATCCAA	0.453													24	471					0	0	0.002780	0	0
UGT2B11	10720	broad.mit.edu	37	4	70078323	70078323	+	Missense_Mutation	SNP	A	G	G	rs143777219	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:70078323A>G	uc003heh.2	-	2	847	c.838T>C	c.(838-840)TTC>CTC	p.F280L	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	280					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TTGCAGTGGAATCCTCCAACA	0.378													5	94					0	0	0.001168	0	0
ART3	419	broad.mit.edu	37	4	77003066	77003066	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:77003066C>T	uc003hjo.2	+	3	278	c.159C>T	c.(157-159)CCC>CCT	p.P53P	ART3_uc003hji.2_Silent_p.P53P|ART3_uc003hjj.2_Silent_p.P53P|ART3_uc003hjk.2_Silent_p.P53P|ART3_uc010ija.1_Silent_p.P53P|ART3_uc003hjn.2_Silent_p.P53P|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Silent_p.P23P|ART3_uc010ijc.2_Silent_p.P23P|ART3_uc010ijd.2_Silent_p.P23P	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	53					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AATACGTTCCCCAACTGCTAA	0.423													21	37					0	0	0.012319	0	0
CENPE	1062	broad.mit.edu	37	4	104101549	104101549	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:104101549C>G	uc003hxb.1	-	13	1251	c.1161G>C	c.(1159-1161)CAG>CAC	p.Q387H	CENPE_uc003hxc.1_Missense_Mutation_p.Q387H	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	387	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TCTGTACTTTCTGAAGCAAAT	0.378													6	31					0	0	0.001984	0	0
PRSS48	345062	broad.mit.edu	37	4	152200956	152200957	+	Nonsense_Mutation	DNP	CA	TG	TG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152200956_152200957CA>TG	uc011cif.1	+	2	61_62	c.61_62CA>TG	c.(61-63)CAA>TGA	p.Q21*	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	21					proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						AGTGTGTGGGCAACCTGTATAC	0.515													26	637					0	0	0.004672	0	0
PRSS48	345062	broad.mit.edu	37	4	152200976	152200976	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152200976C>T	uc011cif.1	+	2	81	c.81C>T	c.(79-81)CGC>CGT	p.R27R	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	27					proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						ACTCCAGCCGCGTTGTAGGTG	0.527													19	632					0	0	0.007413	0	0
PRSS48	345062	broad.mit.edu	37	4	152201036	152201036	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201036T>G	uc011cif.1	+	2	141	c.141T>G	c.(139-141)TTT>TTG	p.F47L	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	47	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GCCTACACTTTGACCACAACT	0.542													38	582					0	0	0.009718	0	0
PRSS48	345062	broad.mit.edu	37	4	152201038	152201038	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201038A>G	uc011cif.1	+	2	143	c.143A>G	c.(142-144)GAC>GGC	p.D48G	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	48	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CTACACTTTGACCACAACTTT	0.542													41	587					0	0	0.003610	0	0
PRSS48	345062	broad.mit.edu	37	4	152201044	152201044	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201044A>G	uc011cif.1	+	2	149	c.149A>G	c.(148-150)AAC>AGC	p.N50S	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	50	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TTTGACCACAACTTTATCTGT	0.552													29	655					0	0	0.007291	0	0
PRSS48	345062	broad.mit.edu	37	4	152201058	152201058	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201058G>T	uc011cif.1	+	2	163	c.163G>T	c.(163-165)GGT>TGT	p.G55C	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	55	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TATCTGTGGAGGTTCCCTCGT	0.532													58	680					1.91898e-51	2.0958e-51	0.003610	1	0
PRSS48	345062	broad.mit.edu	37	4	152201066	152201066	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201066C>G	uc011cif.1	+	2	171	c.171C>G	c.(169-171)CTC>CTG	p.L57L	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	57	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GAGGTTCCCTCGTCAGTGAGA	0.532													47	704					0	0	0.003610	0	0
PRSS48	345062	broad.mit.edu	37	4	152201080	152201080	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201080T>G	uc011cif.1	+	2	185	c.185T>G	c.(184-186)TTG>TGG	p.L62W	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	62	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						AGTGAGAGGTTGATACTGACA	0.512													30	723					0	0	0.010818	0	0
PRSS48	345062	broad.mit.edu	37	4	152201091	152201091	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:152201091G>A	uc011cif.1	+	2	196	c.196G>A	c.(196-198)GCA>ACA	p.A66T	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	66	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GATACTGACAGCAGCACACTG	0.493													27	711					0	0	0.009535	0	0
TLR2	7097	broad.mit.edu	37	4	154626100	154626100	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:154626100C>T	uc003inq.2	+	3	2260	c.2041C>T	c.(2041-2043)CCT>TCT	p.P681S	TLR2_uc003inr.2_Missense_Mutation_p.P681S|TLR2_uc003ins.2_Missense_Mutation_p.P681S	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	681	TIR.|Cytoplasmic (Potential).			P->F: Abolishes the interaction with MYD88. No effect on oligomerization or on the structure of the TIR domain.	cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				GGACTTCATTCCTGGCAAGTG	0.463													6	31					0	0	0.001984	0	0
PALLD	23022	broad.mit.edu	37	4	169589347	169589347	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:169589347C>T	uc011cjx.1	+	3	1126	c.915C>T	c.(913-915)TTC>TTT	p.F305F	PALLD_uc003iru.2_Silent_p.F305F|PALLD_uc003irv.2_5'UTR	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	305	Ig-like C2-type 1.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GCAGATGGTTCTGTGAAGGGA	0.468									Pancreatic_Cancer_Familial_Clustering_of				5	40					0	0	0.000602	0	0
STOX2	56977	broad.mit.edu	37	4	184931634	184931634	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:184931634C>G	uc003ivz.1	+	3	3078	c.1643C>G	c.(1642-1644)TCC>TGC	p.S548C	STOX2_uc003iwa.1_Missense_Mutation_p.S237C	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	548					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		CACATTTCGTCCACAAGCTAT	0.532													3	14					0	0	0.004672	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5209234	5209234	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:5209234C>A	uc003jdl.2	+	10	1618	c.1480C>A	c.(1480-1482)CAG>AAG	p.Q494K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.Q494K|ADAMTS16_uc003jdj.1_Missense_Mutation_p.Q494K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	494	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CCTTGCTGATCAGCCAAAGCC	0.448													16	79					8.00594e-06	8.35467e-06	0.007413	1	0
MTRR	4552	broad.mit.edu	37	5	7897305	7897305	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:7897305G>T	uc003jed.2	+	14	2008	c.1978G>T	c.(1978-1980)GGC>TGC	p.G660C	MTRR_uc003jee.3_Missense_Mutation_p.G633C|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_RNA|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	660					methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	CCAGCTTCATGGCCAGCAGGT	0.512													72	80					2.17656e-39	2.37251e-39	0.003610	1	0
DNAH5	1767	broad.mit.edu	37	5	13762983	13762983	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:13762983C>A	uc003jfd.2	-	60	10171	c.10129G>T	c.(10129-10131)GAG>TAG	p.E3377*	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3377	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTATCACCTCTTCATTGATT	0.368									Kartagener_syndrome				10	27					0.000673444	0.000691878	0.008291	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33535065	33535065	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:33535065C>G	uc003jia.1	-	23	4642	c.4479G>C	c.(4477-4479)AAG>AAC	p.K1493N	ADAMTS12_uc010iuq.1_Missense_Mutation_p.K1408N	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1493	TSP type-1 8.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGACAGTCCTCTTCTGAAAGC	0.473										HNSCC(64;0.19)			31	19					0	0	0.007291	0	0
RAI14	26064	broad.mit.edu	37	5	34830792	34830792	+	Splice_Site	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:34830792G>C	uc003jir.2	+	18	3062	c.2866_splice	c.e18-1	p.G956_splice	RAI14_uc010iur.2_Splice_Site_p.G927_splice|RAI14_uc011coj.1_Splice_Site_p.G956_splice|RAI14_uc003jis.2_Splice_Site_p.G959_splice|RAI14_uc003jit.2_Splice_Site_p.G956_splice|RAI14_uc011cok.1_Splice_Site_p.G948_splice	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a							cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					GAATATCCTAGGGCCAGATGG	0.428													6	29					0	0	0.001168	0	0
RAD1	5810	broad.mit.edu	37	5	34908893	34908893	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:34908893C>G	uc003jix.2	-	6	1155	c.826G>C	c.(826-828)GAA>CAA	p.E276Q	RAD1_uc003jiw.2_Missense_Mutation_p.E167Q|RAD1_uc003jiy.2_Missense_Mutation_p.E276Q	NM_002853	NP_002844	O60671	RAD1_HUMAN	RAD1 homolog	276					DNA damage checkpoint|DNA repair|DNA replication|meiotic prophase I	nucleoplasm	3'-5' exonuclease activity|damaged DNA binding|exodeoxyribonuclease III activity|protein binding				0	all_lung(31;0.000107)	Lung NSC(810;5.19e-05)|Ovarian(839;0.0448)|Breast(839;0.198)	COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TCAGGAACTTCTTCATCAGGG	0.338								Other_conserved_DNA_damage_response_genes					9	22					0	0	0.004482	0	0
ZNF366	167465	broad.mit.edu	37	5	71756190	71756190	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:71756190G>A	uc003kce.1	-	2	1320	c.1134C>T	c.(1132-1134)GCC>GCT	p.A378A		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	378	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TCTTCAGCTGGGCCAAGGTGG	0.632													6	31					0	0	0.001168	0	0
RASA1	5921	broad.mit.edu	37	5	86564614	86564614	+	Missense_Mutation	SNP	C	T	T	rs149246093		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:86564614C>T	uc003kiw.2	+	1	464	c.346C>T	c.(346-348)CTC>TTC	p.L116F	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_5'Flank|RASA1_uc011ctv.1_5'Flank|RASA1_uc011ctw.1_5'Flank|RASA1_uc010jaw.2_5'Flank|RASA1_uc011ctu.1_Missense_Mutation_p.L116F	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	116					cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		AGACATGGCTCTCACCAAACT	0.478													23	24					0	0	0.005443	0	0
AFF4	27125	broad.mit.edu	37	5	132222085	132222085	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:132222085C>A	uc003kyd.2	-	18	3424	c.3016G>T	c.(3016-3018)GAG>TAG	p.E1006*	AFF4_uc011cxk.1_Nonsense_Mutation_p.E684*	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1006					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGCAAAGACTCGCATCGCAGG	0.483													13	29					0.00010058	0.000103902	0.013537	1	0
HSPA9	3313	broad.mit.edu	37	5	137892546	137892546	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:137892546C>A	uc003ldf.2	-	15	1846	c.1738G>T	c.(1738-1740)GAA>TAA	p.E580*	HSPA9_uc003lde.2_5'UTR	NM_004134	NP_004125	P38646	GRP75_HUMAN	heat shock 70kDa protein 9 precursor	580					anti-apoptosis|protein folding	cell surface|mitochondrial nucleoid	ATP binding|unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TTAACTGCTTCAACTCGTTCC	0.358													9	27					2.17888e-05	2.26539e-05	0.006214	1	0
PCDHA4	56144	broad.mit.edu	37	5	140189056	140189056	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:140189056G>A	uc003lhi.2	+	1	2385	c.2284G>A	c.(2284-2286)GAG>AAG	p.E762K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E762K|PCDHA4_uc011daa.1_Missense_Mutation_p.E762K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	762	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCTCTGGTGAGGGCCCACC	0.622													16	36					0	0	0.004990	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308814	140308814	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:140308814C>A	uc003lih.2	+	1	2513	c.2337C>A	c.(2335-2337)GAC>GAA	p.D779E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.D779E	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	779	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCTGCCGACCTGCGAAATC	0.468													7	47					5.4927e-09	5.80731e-09	0.004482	1	0
PCDHB6	56130	broad.mit.edu	37	5	140531356	140531356	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:140531356G>A	uc003lir.2	+	1	1518	c.1518G>A	c.(1516-1518)GCG>GCA	p.A506A	PCDHB6_uc011dah.1_Silent_p.A370A	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	506	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCATCAACGCGGACAACGGCC	0.662													6	117					0	0	0.003163	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712442	140712442	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:140712442G>A	uc003lji.1	+	1	2191	c.2191G>A	c.(2191-2193)GGC>AGC	p.G731S	PCDHGA1_uc011dan.1_Missense_Mutation_p.G731S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	731	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGGGAGGCGGCTTAGCGAG	0.662													5	44					0	0	0.001168	0	0
ARAP3	64411	broad.mit.edu	37	5	141033632	141033632	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:141033632G>A	uc003llm.2	-	33	4598	c.4520C>T	c.(4519-4521)TCC>TTC	p.S1507F	ARAP3_uc003lll.2_Missense_Mutation_p.S458F|ARAP3_uc011dbe.1_Missense_Mutation_p.S1156F|ARAP3_uc003lln.2_Missense_Mutation_p.S1338F	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1507	Pro-rich.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GGATGGCTGGGAAGGACTTCC	0.642													38	74					0	0	0.007835	0	0
TLX3	30012	broad.mit.edu	37	5	170736613	170736613	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:170736613C>T	uc003mbf.2	+	1	326	c.244C>T	c.(244-246)CTA>TTA	p.L82L	uc003mbe.1_5'Flank	NM_021025	NP_066305	O43711	TLX3_HUMAN	T-cell leukemia homeobox 3	82						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAACCTGAGCCTAGCGCCCGC	0.746			T	BCL11B	T-ALL								5	4					0	0	0.000602	0	0
LMAN2	10960	broad.mit.edu	37	5	176761333	176761333	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:176761333C>G	uc003mge.2	-	7	1099	c.862G>C	c.(862-864)GAC>CAC	p.D288H	LMAN2_uc003mgd.2_Missense_Mutation_p.D288H	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor	288	Lumenal (Potential).				protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTGGTCCAGTCGATGCTCTCC	0.587													5	9					0	0	0.000602	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179306153	179306153	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:179306153G>A	uc003mlh.2	-	9	1498	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	TBC1D9B_uc003mli.2_Silent_p.F487F|TBC1D9B_uc003mlj.2_Silent_p.F487F	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	487						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCCGTACTCGAAGAAGTGGA	0.617													8	6					0	0	0.004482	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727499	25727499	+	Silent	SNP	T	C	C	rs1137660		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:25727499T>C	uc003nfd.2	+	1	363	c.363T>C	c.(361-363)ACT>ACC	p.T121T	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	121					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						AGGCTGTCACTAAGTACACCA	0.498													7	51					0	0	0.003080	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727508	25727508	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:25727508C>T	uc003nfd.2	+	1	372	c.372C>T	c.(370-372)ACC>ACT	p.T124T	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	124					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						CTAAGTACACCAGCTCCAAGT	0.483													8	52					0	0	0.003080	0	0
TRIM38	10475	broad.mit.edu	37	6	25966895	25966895	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:25966895C>G	uc003nfm.2	+	3	580	c.145C>G	c.(145-147)CAA>GAA	p.Q49E	TRIM38_uc003nfn.2_Missense_Mutation_p.Q49E	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	49	RING-type.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						AAACCCAAGCCAAAAGCAACT	0.507													13	64					0	0	0.001855	0	0
HIST1H4B	8366	broad.mit.edu	37	6	26027241	26027241	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:26027241C>G	uc003nfr.2	-	1	240	c.240G>C	c.(238-240)AAG>AAC	p.K80N		NM_003544	NP_003535	P62805	H4_HUMAN	histone cluster 1, H4b	80					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						CAGTGACAGTCTTGCGCTTGG	0.537											OREG0017238	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	45					0	0	0.012213	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775319	27775319	+	Silent	SNP	G	A	A	rs141178835		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775319G>A	uc003njl.2	-	1	391	c.366C>T	c.(364-366)TAC>TAT	p.Y122Y	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	122					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGGAGCTGGTGTACTTGGTGA	0.562													34	299					0	0	0.013726	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775346	27775346	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775346C>G	uc003njl.2	-	1	364	c.339G>C	c.(337-339)TCG>TCC	p.S113S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	113					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGGTGCCCTCCGACACCGCGT	0.582													18	354					0	0	0.006122	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775352	27775352	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775352C>G	uc003njl.2	-	1	358	c.333G>C	c.(331-333)GCG>GCC	p.A111A	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	111					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCTCCGACACCGCGTGCTTGG	0.597													13	359					0	0	0.003163	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775436	27775436	+	Silent	SNP	G	A	A	rs147149614	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775436G>A	uc003njl.2	-	1	274	c.249C>T	c.(247-249)CAC>CAT	p.H83H	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	83					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCTTGTTGTAGTGCGCCAGGC	0.632													25	564					0	0	0.003954	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775508	27775508	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775508G>A	uc003njl.2	-	1	202	c.177C>T	c.(175-177)GCC>GCT	p.A59A	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	59					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGATTCCCATGGCCTTAGAAG	0.582													56	853					0	0	0.003610	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775514	27775514	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775514A>G	uc003njl.2	-	1	196	c.171T>C	c.(169-171)TCT>TCC	p.S57S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	57					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCATGGCCTTAGAAGAGATGC	0.577													47	871					0	0	0.003610	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775562	27775562	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775562G>A	uc003njl.2	-	1	148	c.123C>T	c.(121-123)TAC>TAT	p.Y41Y	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	41					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCTTGTACACGTACACGGAGT	0.587													29	755					0	0	0.005443	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775568	27775568	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775568G>A	uc003njl.2	-	1	142	c.117C>T	c.(115-117)TCC>TCT	p.S39S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	39					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ACACGTACACGGAGTAGCTCT	0.582													23	727					0	0	0.002299	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775646	27775646	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27775646C>T	uc003njl.2	-	1	64	c.39G>A	c.(37-39)AAG>AAA	p.K13K	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	13					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTTGGAGCCCTTCTTCGGGG	0.517													53	620					0	0	0.003610	0	0
HIST1H3H	8357	broad.mit.edu	37	6	27776335	27776335	+	5'Flank	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27776335A>G	uc003njm.2	+						HIST1H2BL_uc003njl.2_5'Flank	NM_003536	NP_003527	P68431	H31_HUMAN	histone cluster 1, H3h						blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						AGGCCGTGCTACTGCCCAAGA	0.557													12	351					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782159	27782159	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782159T>C	uc003njn.1	-	1	360	c.360A>G	c.(358-360)AAA>AAG	p.K120K	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	120					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGCTCTCAGTTTTCTTTGGCA	0.493													34	596					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782165	27782165	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782165T>G	uc003njn.1	-	1	354	c.354A>C	c.(352-354)CCA>CCC	p.P118P	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	118					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CAGTTTTCTTTGGCAGCAGCA	0.498													28	598					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782171	27782171	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782171C>T	uc003njn.1	-	1	348	c.348G>A	c.(346-348)CTG>CTA	p.L116L	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	116					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTTTGGCAGCAGCACGGCCT	0.512													32	605					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782938	27782938	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782938T>C	uc003njo.2	+	1	117	c.117T>C	c.(115-117)TCT>TCC	p.S39S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	39					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						AGAGCTACTCTGTGTATGTGT	0.507													31	706					0	0	0.013114	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782944	27782944	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782944T>C	uc003njo.2	+	1	123	c.123T>C	c.(121-123)TAT>TAC	p.Y41Y	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	41					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						ACTCTGTGTATGTGTACAAGG	0.512													27	742					0	0	0.005524	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782992	27782992	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782992C>T	uc003njo.2	+	1	171	c.171C>T	c.(169-171)TCC>TCT	p.S57S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	57					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						GCATCTCTTCCAAGGCTATGG	0.542													47	789					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782998	27782998	+	Silent	SNP	T	C	C	rs143234094		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27782998T>C	uc003njo.2	+	1	177	c.177T>C	c.(175-177)GCT>GCC	p.A59A	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	59					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CTTCCAAGGCTATGGGAATCA	0.542													45	759					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783034	27783034	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27783034T>C	uc003njo.2	+	1	213	c.213T>C	c.(211-213)TTT>TTC	p.F71F	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	71					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						ACGACATCTTTGAGCGTATCG	0.567													47	535					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783070	27783070	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27783070T>C	uc003njo.2	+	1	249	c.249T>C	c.(247-249)CAT>CAC	p.H83H	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	83					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						GCCTGGCGCATTACAACAAGC	0.597													29	378					0	0	0.010818	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783097	27783097	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27783097G>C	uc003njo.2	+	1	276	c.276G>C	c.(274-276)TCG>TCC	p.S92S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	92					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CCATCACTTCGAGGGAGATCC	0.587													19	319					0	0	0.002299	0	0
ABCF1	23	broad.mit.edu	37	6	30539290	30539290	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:30539290C>T	uc003nql.2	+	1	121	c.26C>T	c.(25-27)CCG>CTG	p.P9L	ABCF1_uc003nqk.2_Missense_Mutation_p.P9L|ABCF1_uc003nqm.2_Missense_Mutation_p.P9L|ABCF1_uc010jsb.2_Missense_Mutation_p.P9L	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	9					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						AAGCAGCAGCCGCCGGAGCCC	0.667													41	178					0	0	0.008740	0	0
ABCF1	23	broad.mit.edu	37	6	30539323	30539323	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:30539323G>A	uc003nql.2	+	1	154	c.59G>A	c.(58-60)AGC>AAC	p.S20N	ABCF1_uc003nqk.2_Missense_Mutation_p.S20N|ABCF1_uc003nqm.2_Missense_Mutation_p.S20N|ABCF1_uc010jsb.2_Missense_Mutation_p.S20N	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	20					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						GACGGAGAGAGCACGAGCCCA	0.637													23	182					0	0	0.002780	0	0
CCHCR1	54535	broad.mit.edu	37	6	31118780	31118780	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31118780C>T	uc003nsr.3	-	5	777	c.654G>A	c.(652-654)CTG>CTA	p.L218L	CCHCR1_uc011dne.1_Silent_p.L218L|CCHCR1_uc003nsq.3_Silent_p.L271L|CCHCR1_uc003nsp.3_Silent_p.L307L|CCHCR1_uc010jsk.1_Silent_p.L218L	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	218	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						GAGCCTCGGCCAGCTCCTTGG	0.602													34	197					0	0	0.003755	0	0
BAT2	7916	broad.mit.edu	37	6	31599781	31599781	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31599781G>A	uc003nvb.3	+	16	3580	c.3331G>A	c.(3331-3333)GAG>AAG	p.E1111K	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.E1111K	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1111	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						AACAGGCAGCGAGACCCATGA	0.647													9	151					0	0	0.004482	0	0
BAT2	7916	broad.mit.edu	37	6	31599878	31599878	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31599878G>C	uc003nvb.3	+	16	3677	c.3428G>C	c.(3427-3429)GGA>GCA	p.G1143A	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.G1143A	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1143	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CCACCACCAGGAGCCCCACCT	0.672													10	97					0	0	0.010504	0	0
BAT2	7916	broad.mit.edu	37	6	31600224	31600224	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31600224G>C	uc003nvb.3	+	16	4023	c.3774G>C	c.(3772-3774)CGG>CGC	p.R1258R	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.R1258R	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1258	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CTCGTTTCCGGAGGCTGAAGC	0.627													10	189					0	0	0.010729	0	0
BAT2	7916	broad.mit.edu	37	6	31600709	31600709	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31600709G>C	uc003nvb.3	+	16	4508	c.4259G>C	c.(4258-4260)GGA>GCA	p.G1420A	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.G1420A	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1420	Poly-Gly.|4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GGGGGTCCTGGAGGAAGGACC	0.612													8	65					0	0	0.003080	0	0
BAT2	7916	broad.mit.edu	37	6	31600727	31600727	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31600727G>A	uc003nvb.3	+	16	4526	c.4277G>A	c.(4276-4278)GGA>GAA	p.G1426E	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.G1426E	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1426	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						ACCGGGCCAGGACGAGGCGAC	0.607													5	48					0	0	0.001168	0	0
BAT2	7916	broad.mit.edu	37	6	31604509	31604509	+	Splice_Site	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31604509G>A	uc003nvb.3	+	28	6184	c.5935_splice	c.e28-1	p.M1979_splice	BAT2_uc003nvc.3_Splice_Site_p.M1979_splice	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2							cytoplasm|nucleus	protein binding				0						TCTTGTTACAGATGCTTCTAC	0.522													48	858					0	0	0.003610	0	0
C6orf47	57827	broad.mit.edu	37	6	31627050	31627050	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31627050G>T	uc003nvm.1	-	1	1500	c.675C>A	c.(673-675)TTC>TTA	p.F225L		NM_021184	NP_067007	O95873	CF047_HUMAN	G4 protein	225										ovary(1)	1						GGGCAGCCAGGAAGGACAGTA	0.642													17	66					4.14922e-12	4.44108e-12	0.004007	1	0
HSPA1L	3305	broad.mit.edu	37	6	31778229	31778229	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778229A>G	uc003nxh.2	-	2	1704	c.1521T>C	c.(1519-1521)AAT>AAC	p.N507N	HSPA1L_uc010jte.2_Silent_p.N507N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	507					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGCCCTTGTCATTGGTGATGG	0.493													27	680					0	0	0.008361	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778277	31778277	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778277T>C	uc003nxh.2	-	2	1656	c.1473A>G	c.(1471-1473)ACA>ACG	p.T491T	HSPA1L_uc010jte.2_Silent_p.T491T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	491					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTCCGTGGCTGTGACATTGA	0.547													30	454					0	0	0.007291	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778286	31778286	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778286G>C	uc003nxh.2	-	2	1647	c.1464C>G	c.(1462-1464)CTC>CTG	p.L488L	HSPA1L_uc010jte.2_Silent_p.L488L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	488					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTGTGACATTGAGAATACCAT	0.547													22	448					0	0	0.004878	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778304	31778304	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778304A>G	uc003nxh.2	-	2	1629	c.1446T>C	c.(1444-1446)ATT>ATC	p.I482I	HSPA1L_uc010jte.2_Silent_p.I482I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	482					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTGGCATCAATGTCAAACG	0.552													25	460					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778310	31778310	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778310A>G	uc003nxh.2	-	2	1623	c.1440T>C	c.(1438-1440)TTT>TTC	p.F480F	HSPA1L_uc010jte.2_Silent_p.F480F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	480					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATCAATGTCAAACGTCACCT	0.552													32	463					0	0	0.012213	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778313	31778313	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778313C>G	uc003nxh.2	-	2	1620	c.1437G>C	c.(1435-1437)ACG>ACC	p.T479T	HSPA1L_uc010jte.2_Silent_p.T479T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	479					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAATGTCAAACGTCACCTCGA	0.552													37	475					0	0	0.004878	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778328	31778328	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778328A>G	uc003nxh.2	-	2	1605	c.1422T>C	c.(1420-1422)CCT>CCC	p.P474P	HSPA1L_uc010jte.2_Silent_p.P474P	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	474					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTCGATCTGAGGAACTCCCC	0.537													28	500					0	0	0.007291	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778331	31778331	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778331A>C	uc003nxh.2	-	2	1602	c.1419T>G	c.(1417-1419)GTT>GTG	p.V473V	HSPA1L_uc010jte.2_Silent_p.V473V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	473					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CGATCTGAGGAACTCCCCTGG	0.542													38	497					0	0	0.004878	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778334	31778334	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778334T>G	uc003nxh.2	-	2	1599	c.1416A>C	c.(1414-1416)GGA>GGC	p.G472G	HSPA1L_uc010jte.2_Silent_p.G472G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	472					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTGAGGAACTCCCCTGGGTG	0.547													35	508					0	0	0.003271	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778343	31778343	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778343T>G	uc003nxh.2	-	2	1590	c.1407A>C	c.(1405-1407)GCA>GCC	p.A469A	HSPA1L_uc010jte.2_Silent_p.A469A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	469					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTCCCCTGGGTGCTGGAGGGA	0.557													32	540					0	0	0.012213	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778359	31778359	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778359G>C	uc003nxh.2	-	2	1574	c.1391C>G	c.(1390-1392)ACT>AGT	p.T464S	HSPA1L_uc010jte.2_Missense_Mutation_p.T464S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	464					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGGGATTCCAGTCAGGTCAAA	0.557													15	592					0	0	0.008871	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778367	31778367	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778367A>G	uc003nxh.2	-	2	1566	c.1383T>C	c.(1381-1383)TTT>TTC	p.F461F	HSPA1L_uc010jte.2_Silent_p.F461F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	461					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGTCAGGTCAAACCGCCCCA	0.542													49	649					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778391	31778391	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778391C>T	uc003nxh.2	-	2	1542	c.1359G>A	c.(1357-1359)AAG>AAA	p.K453K	HSPA1L_uc010jte.2_Silent_p.K453K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	453					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGTTGTTGTCCTTTGTCATGG	0.557													53	867					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778394	31778394	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778394T>C	uc003nxh.2	-	2	1539	c.1356A>G	c.(1354-1356)ACA>ACG	p.T452T	HSPA1L_uc010jte.2_Silent_p.T452T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	452					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTTGTCCTTTGTCATGGCCC	0.557													59	859					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778415	31778415	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778415A>G	uc003nxh.2	-	2	1518	c.1335T>C	c.(1333-1335)TAT>TAC	p.Y445Y	HSPA1L_uc010jte.2_Silent_p.Y445Y	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	445					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTCGCCCTCATACACCTGGA	0.567													45	871					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778448	31778448	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778448A>G	uc003nxh.2	-	2	1485	c.1302T>C	c.(1300-1302)TCT>TCC	p.S434S	HSPA1L_uc010jte.2_Silent_p.S434S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	434					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GTTGGTTGTCAGAGTAGGTGG	0.587													44	824					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778463	31778463	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778463A>G	uc003nxh.2	-	2	1470	c.1287T>C	c.(1285-1287)ATT>ATC	p.I429I	HSPA1L_uc010jte.2_Silent_p.I429I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	429					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGGTGGTGAAAATCTGTGTCT	0.602													38	821					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778469	31778469	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778469T>C	uc003nxh.2	-	2	1464	c.1281A>G	c.(1279-1281)ACA>ACG	p.T427T	HSPA1L_uc010jte.2_Silent_p.T427T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	427					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGAAAATCTGTGTCTGCTTGG	0.607													20	840					0	0	0.012213	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778502	31778502	+	Silent	SNP	T	G	G	rs17857014		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778502T>G	uc003nxh.2	-	2	1431	c.1248A>C	c.(1246-1248)ATA>ATC	p.I416I	HSPA1L_uc010jte.2_Silent_p.I416I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	416				I -> M (in Ref. 7; AAH34483).	response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTTGCGCTTTATCAGGGCAG	0.607													42	789					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778523	31778523	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778523C>T	uc003nxh.2	-	2	1410	c.1227G>A	c.(1225-1227)GGG>GGA	p.G409G	HSPA1L_uc010jte.2_Silent_p.G409G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	409					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCATCACGCCCCCAGCCGTCT	0.602													57	680					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778526	31778526	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778526A>G	uc003nxh.2	-	2	1407	c.1224T>C	c.(1222-1224)GCT>GCC	p.A408A	HSPA1L_uc010jte.2_Silent_p.A408A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	408				A -> V (in Ref. 1; AAA63228).	response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCACGCCCCCAGCCGTCTCCA	0.602													42	669					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778544	31778544	+	Silent	SNP	G	C	C	rs146348020	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778544G>C	uc003nxh.2	-	2	1389	c.1206C>G	c.(1204-1206)TCC>TCG	p.S402S	HSPA1L_uc010jte.2_Silent_p.S402S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	402					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCAGCCCCAGGGACAGGGGAG	0.597													32	619					0	0	0.006230	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778580	31778580	+	Silent	SNP	T	C	C	rs143774785		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778580T>C	uc003nxh.2	-	2	1353	c.1170A>G	c.(1168-1170)GTA>GTG	p.V390V	HSPA1L_uc010jte.2_Silent_p.V390V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	390					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GCAGGTCCTGTACCTTCTCAG	0.597													45	507					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778583	31778583	+	Missense_Mutation	SNP	C	G	G	rs148130784		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778583C>G	uc003nxh.2	-	2	1350	c.1167G>C	c.(1165-1167)AAG>AAC	p.K389N	HSPA1L_uc010jte.2_Missense_Mutation_p.K389N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	389					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGTCCTGTACCTTCTCAGACT	0.592													54	504					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778589	31778589	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778589A>G	uc003nxh.2	-	2	1344	c.1161T>C	c.(1159-1161)TCT>TCC	p.S387S	HSPA1L_uc010jte.2_Silent_p.S387S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	387					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GTACCTTCTCAGACTTGTCCC	0.582													36	497					0	0	0.007835	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778616	31778616	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778616T>C	uc003nxh.2	-	2	1317	c.1134A>G	c.(1132-1134)CAA>CAG	p.Q378Q	HSPA1L_uc010jte.2_Silent_p.Q378Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	378					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGATGGCTGCTTGTACCGCAG	0.602													22	487					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778625	31778625	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778625A>C	uc003nxh.2	-	2	1308	c.1125T>G	c.(1123-1125)GCT>GCG	p.A375A	HSPA1L_uc010jte.2_Silent_p.A375A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	375					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTTGTACCGCAGCCCCATATG	0.602													23	457					0	0	0.005443	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778634	31778634	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778634T>G	uc003nxh.2	-	2	1299	c.1116A>C	c.(1114-1116)GCA>GCC	p.A372A	HSPA1L_uc010jte.2_Silent_p.A372A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	372					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGCCCCATATGCTACGGCCT	0.602													22	438					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778637	31778637	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778637T>C	uc003nxh.2	-	2	1296	c.1113A>G	c.(1111-1113)GTA>GTG	p.V371V	HSPA1L_uc010jte.2_Silent_p.V371V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	371					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCCCATATGCTACGGCCTCAT	0.597													22	437					0	0	0.005443	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778640	31778640	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778640G>A	uc003nxh.2	-	2	1293	c.1110C>T	c.(1108-1110)GCC>GCT	p.A370A	HSPA1L_uc010jte.2_Silent_p.A370A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	370					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATATGCTACGGCCTCATCAG	0.582													19	422					0	0	0.003330	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778667	31778667	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778667G>C	uc003nxh.2	-	2	1266	c.1083C>G	c.(1081-1083)CTC>CTG	p.L361L	HSPA1L_uc010jte.2_Silent_p.L361L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	361					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGCTCTTGTTGAGATCACGTC	0.537													24	368					0	0	0.009535	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778670	31778670	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778670A>G	uc003nxh.2	-	2	1263	c.1080T>C	c.(1078-1080)GAT>GAC	p.D360D	HSPA1L_uc010jte.2_Silent_p.D360D	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	360					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTTGTTGAGATCACGTCCAT	0.532													26	366					0	0	0.012213	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778676	31778676	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778676T>C	uc003nxh.2	-	2	1257	c.1074A>G	c.(1072-1074)GGA>GGG	p.G358G	HSPA1L_uc010jte.2_Silent_p.G358G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	358					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGAGATCACGTCCATTGAAGT	0.527													20	372					0	0	0.005443	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778694	31778694	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778694A>C	uc003nxh.2	-	2	1239	c.1056T>G	c.(1054-1056)CTT>CTG	p.L352L	HSPA1L_uc010jte.2_Silent_p.L352L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	352					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTAGTCCTGAAGCAGCCGCT	0.527													26	354					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778701	31778702	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778701_31778702CG>TT	uc003nxh.2	-	2	1231_1232	c.1048_1049CG>AA	c.(1048-1050)CGG>AAG	p.R350K	HSPA1L_uc010jte.2_Missense_Mutation_p.R350K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	350					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTGAAGCAGCCGCTGCACCTTG	0.53													38	334					0	0	0.004672	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778994	31778994	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31778994T>C	uc003nxh.2	-	2	939	c.756A>G	c.(754-756)AAA>AAG	p.K252K	HSPA1L_uc010jte.2_Silent_p.K252K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	252					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGATGTCCTTTTTGTGTTTCC	0.587													38	562					0	0	0.007835	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779028	31779028	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779028C>T	uc003nxh.2	-	2	905	c.722G>A	c.(721-723)AGC>AAC	p.S241N	HSPA1L_uc010jte.2_Missense_Mutation_p.S241N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	241					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CACGAAGTGGCTCACAAGCCT	0.552													21	628					0	0	0.003271	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779033	31779033	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779033A>C	uc003nxh.2	-	2	900	c.717T>G	c.(715-717)CTT>CTG	p.L239L	HSPA1L_uc010jte.2_Silent_p.L239L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	239					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTGGCTCACAAGCCTGTTGT	0.542													17	635					0	0	0.010818	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779066	31779066	+	Silent	SNP	A	G	G	rs111381223		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779066A>G	uc003nxh.2	-	2	867	c.684T>C	c.(682-684)ACT>ACC	p.T228T	HSPA1L_uc010jte.2_Silent_p.T228T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	228					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CACCCAGGTGAGTGTCCCCAG	0.498													25	569					0	0	0.006230	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779078	31779078	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779078A>C	uc003nxh.2	-	2	855	c.672T>G	c.(670-672)ACT>ACG	p.T224T	HSPA1L_uc010jte.2_Silent_p.T224T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	224					response to unfolded protein		ATP binding	p.T224N(1)		ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTCCCCAGCAGTGGCCTTTA	0.488													40	551					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779087	31779087	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779087T>C	uc003nxh.2	-	2	846	c.663A>G	c.(661-663)GTA>GTG	p.V221V	HSPA1L_uc010jte.2_Silent_p.V221V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	221					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGTGGCCTTTACCTCAAAAA	0.478													20	524					0	0	0.002299	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779129	31779129	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779129A>G	uc003nxh.2	-	2	804	c.621T>C	c.(619-621)TTT>TTC	p.F207F	HSPA1L_uc010jte.2_Silent_p.F207F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	207					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TTGACACATCAAATGTGCCTC	0.488													20	389					0	0	0.012319	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779312	31779312	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779312A>G	uc003nxh.2	-	2	621	c.438T>C	c.(436-438)ATT>ATC	p.I146I	HSPA1L_uc010jte.2_Silent_p.I146I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	146					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTGGCACGGTAATCACTGCAT	0.468													9	244					0	0	0.008291	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779321	31779321	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779321A>G	uc003nxh.2	-	2	612	c.429T>C	c.(427-429)AAT>AAC	p.N143N	HSPA1L_uc010jte.2_Silent_p.N143N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	143					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TAATCACTGCATTGGTGACAG	0.458													14	249					0	0	0.003163	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779327	31779327	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779327G>C	uc003nxh.2	-	2	606	c.423C>G	c.(421-423)GTC>GTG	p.V141V	HSPA1L_uc010jte.2_Silent_p.V141V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	141					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTGCATTGGTGACAGGGTGGC	0.463													15	245					0	0	0.003163	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779374	31779375	+	Silent	DNP	AT	GC	GC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779374_31779375AT>GC	uc003nxh.2	-	2	558_559	c.375_376AT>GC	c.(373-378)GTATTG>GTGCTG	p.125_126VL>VL	HSPA1L_uc010jte.2_Silent_p.125_126VL>VL	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	125_126					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AACTTAGTCAATACCATCGAAG	0.475													15	243					0	0	0.004672	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779405	31779405	+	Silent	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779405A>T	uc003nxh.2	-	2	528	c.345T>A	c.(343-345)GCT>GCA	p.A115A	HSPA1L_uc010jte.2_Silent_p.A115A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	115					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGGGTAGAAAGCTTTATTCT	0.453													13	300					0	0	0.004007	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779412	31779412	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779412T>G	uc003nxh.2	-	2	521	c.338A>C	c.(337-339)AAT>ACT	p.N113T	HSPA1L_uc010jte.2_Missense_Mutation_p.N113T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	113					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GAAAGCTTTATTCTCCCCTTT	0.433													11	309					0	0	0.002450	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779453	31779453	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779453T>G	uc003nxh.2	-	2	480	c.297A>C	c.(295-297)GAA>GAC	p.E99D	HSPA1L_uc010jte.2_Missense_Mutation_p.E99D	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	99					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GCTTGCCTCCTTCATTAATCA	0.408													12	352					0	0	0.001855	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779456	31779456	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779456A>G	uc003nxh.2	-	2	477	c.294T>C	c.(292-294)AAT>AAC	p.N98N	HSPA1L_uc010jte.2_Silent_p.N98N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	98					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGCCTCCTTCATTAATCACTT	0.413													18	351					0	0	0.008871	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779465	31779465	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779465T>C	uc003nxh.2	-	2	468	c.285A>G	c.(283-285)CAA>CAG	p.Q95Q	HSPA1L_uc010jte.2_Silent_p.Q95Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	95					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTAATCACTTGAAAAGGCC	0.408													27	348					0	0	0.005443	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779468	31779468	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779468A>G	uc003nxh.2	-	2	465	c.282T>C	c.(280-282)TTT>TTC	p.F94F	HSPA1L_uc010jte.2_Silent_p.F94F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	94					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TAATCACTTGAAAAGGCCAAA	0.408													26	356					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779528	31779528	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779528A>C	uc003nxh.2	-	2	405	c.222T>G	c.(220-222)CGT>CGG	p.R74R	HSPA1L_uc010jte.2_Silent_p.R74R	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	74					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGCCGATCAGACGTTTAGCAT	0.473													25	506					0	0	0.009535	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779531	31779531	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779531T>C	uc003nxh.2	-	2	402	c.219A>G	c.(217-219)AAA>AAG	p.K73K	HSPA1L_uc010jte.2_Silent_p.K73K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	73					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CGATCAGACGTTTAGCATCAA	0.483													30	505					0	0	0.005524	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779543	31779543	+	Silent	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779543A>C	uc003nxh.2	-	2	390	c.207T>G	c.(205-207)GTT>GTG	p.V69V	HSPA1L_uc010jte.2_Silent_p.V69V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	69					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TAGCATCAAAAACAGTGTTCT	0.493													31	525					0	0	0.003755	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779555	31779555	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779555G>C	uc003nxh.2	-	2	378	c.195C>G	c.(193-195)CCC>CCG	p.P65P	HSPA1L_uc010jte.2_Silent_p.P65P	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	65					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGTGTTCTGGGGATTCATTG	0.498													24	542					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779563	31779564	+	Missense_Mutation	DNP	TT	GC	GC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779563_31779564TT>GC	uc003nxh.2	-	2	369_370	c.186_187AA>GC	c.(184-189)GCAATG>GCGCTG	p.M63L	HSPA1L_uc010jte.2_Missense_Mutation_p.M63L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	63					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGGGGATTCATTGCTACCTGGT	0.505													19	536					0	0	0.004672	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779591	31779591	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779591A>G	uc003nxh.2	-	2	342	c.159T>C	c.(157-159)ATT>ATC	p.I53I	HSPA1L_uc010jte.2_Silent_p.I53I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	53					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCGCATCCCCAATGAGCCGCT	0.547													57	508					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779609	31779609	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779609T>C	uc003nxh.2	-	2	324	c.141A>G	c.(139-141)ACA>ACG	p.T47T	HSPA1L_uc010jte.2_Silent_p.T47T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	47					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GCTCGGTGTCTGTGAAGGCCA	0.567													68	474					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779678	31779678	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779678C>T	uc003nxh.2	-	2	255	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	HSPA1L_uc010jte.2_Silent_p.Q24Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	24					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTTGCCGTGCTGGAACACCC	0.602													95	460					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779693	31779693	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31779693A>G	uc003nxh.2	-	2	240	c.57T>C	c.(55-57)TGT>TGC	p.C19C	HSPA1L_uc010jte.2_Silent_p.C19C	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	19					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ACACCCCCACACAGGAGTAGG	0.582													108	450					0	0	0.003610	0	0
CFB	629	broad.mit.edu	37	6	31910831	31910831	+	5'Flank	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:31910831C>G	uc003nyj.3	+						C2_uc003nyc.2_Missense_Mutation_p.L226V|C2_uc011doo.1_Missense_Mutation_p.L193V|C2_uc011dop.1_Missense_Mutation_p.L225V|C2_uc003nyf.2_Missense_Mutation_p.L439V|C2_uc010jtk.2_Missense_Mutation_p.L307V|C2_uc011doq.1_Missense_Mutation_p.L410V|C2_uc003nyg.2_Missense_Mutation_p.L216V|CFB_uc011dor.1_Missense_Mutation_p.L286V|C2_uc003nyh.1_Missense_Mutation_p.L90V|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein						complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						TGCCTTCATTCTGCAGGACAC	0.557													17	369					0	0	0.006122	0	0
B3GALT4	8705	broad.mit.edu	37	6	33245457	33245457	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:33245457A>T	uc003odr.2	+	1	541	c.261A>T	c.(259-261)AGA>AGT	p.R87S		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	87	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						TGAACCAGAGAAACGCCATTC	0.662													11	163					0	0	0.008291	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33402933	33402933	+	Missense_Mutation	SNP	C	T	T	rs142649710		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:33402933C>T	uc011dri.1	+	6	709	c.514C>T	c.(514-516)CGG>TGG	p.R172W	SYNGAP1_uc003oeo.1_Missense_Mutation_p.R157W|SYNGAP1_uc010juy.2_Missense_Mutation_p.R157W|SYNGAP1_uc010juz.2_5'Flank	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	172	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						TGCCAGGGCCCGGCTGATGCA	0.413													154	165					0	0	0.003610	0	0
C6orf1	221491	broad.mit.edu	37	6	34214592	34214592	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:34214592A>G	uc003ojf.2	-	5	771	c.179T>C	c.(178-180)ATG>ACG	p.M60T	uc003oje.1_5'Flank|C6orf1_uc003ojg.2_Missense_Mutation_p.M60T|C6orf1_uc003ojh.2_Missense_Mutation_p.M60T|C6orf1_uc003oji.2_RNA	NM_178508	NP_848603	Q86T20	CF001_HUMAN	hypothetical protein LOC221491 precursor	60						extracellular region					0		Ovarian(999;0.0228)		BRCA - Breast invasive adenocarcinoma(397;1.11e-10)		ACGTCTTGACATCCAGCAGTG	0.647											OREG0017364	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	32					0	0	0.003610	0	0
FTSJD2	23070	broad.mit.edu	37	6	37447794	37447794	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:37447794G>C	uc003ons.2	+	24	2634	c.2381G>C	c.(2380-2382)TGC>TCC	p.C794S		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	794	Interaction with POLR2A.				mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CCCAGCATTTGCTACTATGGC	0.592													19	152					0	0	0.008871	0	0
GLP1R	2740	broad.mit.edu	37	6	39040637	39040638	+	Splice_Site	DNP	GA	AC	AC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:39040637_39040638GA>AC	uc003ooj.3	+	6	570	c.510_splice	c.e6-1	p.R170_splice	GLP1R_uc003ooh.2_Splice_Site|GLP1R_uc003ooi.2_Splice_Site	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor						activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	TTCTCCCTCAGACACCTGCACT	0.54													24	45					0	0	0.004672	0	0
TREML3	340206	broad.mit.edu	37	6	41185564	41185564	+	RNA	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41185564T>C	uc003oqb.2	-	1		c.122A>G				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						AACTGCTGTCTGGGGCTTGGA	0.507													8	93					0	0	0.008291	0	0
TREML3	340206	broad.mit.edu	37	6	41185640	41185640	+	RNA	SNP	A	G	G	rs111911263		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41185640A>G	uc003oqb.2	-	1		c.46T>C				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						GGCTGATAGGACCCTCTCTTG	0.522													9	104					0	0	0.013537	0	0
TREML3	340206	broad.mit.edu	37	6	41185673	41185673	+	RNA	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41185673A>G	uc003oqb.2	-	1		c.13T>C				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						CATTGCAGGAAGAGGGTCTGT	0.522													7	100					0	0	0.004482	0	0
TREML3	340206	broad.mit.edu	37	6	41185687	41185687	+	Splice_Site	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41185687T>G	uc003oqb.2	-	1		c.1_splice	c.e1-1			NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						GGTCTGTCCTTAGTGTTTGTG	0.483													6	94					0	0	0.003080	0	0
TREML4	285852	broad.mit.edu	37	6	41196454	41196454	+	Silent	SNP	T	C	C	rs145503269	byFrequency	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41196454T>C	uc003oqc.2	+	2	170	c.66T>C	c.(64-66)GGT>GGC	p.G22G	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	22						extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GGGTAAAGGGTGCTGTGCCTG	0.577													10	218					0	0	0.013537	0	0
TREML4	285852	broad.mit.edu	37	6	41196530	41196530	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41196530C>T	uc003oqc.2	+	2	246	c.142C>T	c.(142-144)CCC>TCC	p.P48S	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	48	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAAGAGAGGGCCCTATCAGCC	0.537													20	198					0	0	0.003954	0	0
TREML4	285852	broad.mit.edu	37	6	41196649	41196649	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41196649C>A	uc003oqc.2	+	2	365	c.261C>A	c.(259-261)CCC>CCA	p.P87P	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	87	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GGGACAAGCCCAATGCTGGCT	0.488													9	226					2.48551e-13	2.66541e-13	0.004990	1	0
TREML4	285852	broad.mit.edu	37	6	41196656	41196656	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41196656G>A	uc003oqc.2	+	2	372	c.268G>A	c.(268-270)GGC>AGC	p.G90S	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	90	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GCCCAATGCTGGCTTCTTCAA	0.478													10	221					0	0	0.004990	0	0
TREML4	285852	broad.mit.edu	37	6	41196659	41196659	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:41196659T>A	uc003oqc.2	+	2	375	c.271T>A	c.(271-273)TTC>ATC	p.F91I	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	91	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAATGCTGGCTTCTTCAACAT	0.468													11	222					0	0	0.006122	0	0
C6orf138	442213	broad.mit.edu	37	6	48036193	48036193	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:48036193C>T	uc011dwm.1	-	1	233	c.148G>A	c.(148-150)GAG>AAG	p.E50K	C6orf138_uc011dwn.1_Intron|C6orf138_uc003ozf.2_Missense_Mutation_p.E67K	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	67						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						AGGTCGCCCTCGGGCTGGAAG	0.662													22	24					0	0	0.012319	0	0
RPS12	6206	broad.mit.edu	37	6	133138134	133138134	+	Silent	SNP	C	G	G	rs146638149		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:133138134C>G	uc003qdx.2	+	5	352	c.270C>G	c.(268-270)GGC>GGG	p.G90G	RPS12_uc003qdy.1_3'UTR	NM_001016	NP_001007	P25398	RS12_HUMAN	ribosomal protein S12	90					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	structural constituent of ribosome				0	Breast(56;0.214)			OV - Ovarian serous cystadenocarcinoma(155;0.00284)|GBM - Glioblastoma multiforme(226;0.0256)		AATGGGTAGGCCTTTGTAAAA	0.358													4	25					0	0	0.004482	0	0
RAET1L	154064	broad.mit.edu	37	6	150343212	150343212	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:150343212T>G	uc011eei.1	-	2	314	c.253A>C	c.(253-255)ATG>CTG	p.M85L		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	85	MHC class I alpha-1 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TTCCAGGCCATTGTGACATTT	0.483													11	96					0	0	0.008291	0	0
AKAP12	9590	broad.mit.edu	37	6	151673276	151673276	+	Silent	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:151673276G>T	uc011eep.1	+	4	3990	c.3750G>T	c.(3748-3750)GTG>GTT	p.V1250V	AKAP12_uc003qoe.2_Silent_p.V1250V|AKAP12_uc003qof.2_Silent_p.V1152V|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.V1145V	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1250					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		ATAAAGAGGTGTCAGTGGAAA	0.438													17	5					9.16793e-09	9.68395e-09	0.004990	1	0
PLG	5340	broad.mit.edu	37	6	161159642	161159642	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:161159642G>C	uc003qtm.3	+	15	1938	c.1875G>C	c.(1873-1875)GAG>GAC	p.E625D		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	625	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ACTGCTTGGAGAAGTATGTTT	0.313													8	37					0	0	0.004482	0	0
MLLT4	4301	broad.mit.edu	37	6	168227167	168227167	+	5'Flank	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:168227167A>C	uc003qwd.2	+						MLLT4_uc003qwb.1_5'Flank|MLLT4_uc003qwc.1_5'Flank|C6orf124_uc003qwa.2_RNA	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CGAACCGAACATAGCACCGCC	0.706			T	MLL	AL								12	216					0	0	0.003610	0	0
TMEM184A	202915	broad.mit.edu	37	7	1590520	1590520	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:1590520G>A	uc003skv.3	-	3	635	c.318C>T	c.(316-318)CTC>CTT	p.L106L	TMEM184A_uc003skt.3_5'UTR|TMEM184A_uc003skw.3_5'UTR	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	106	Helical; (Potential).					integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		GGAGGAGGCTGAGCCAGGAGT	0.617													27	37					0	0	0.006320	0	0
C7orf40	285958	broad.mit.edu	37	7	45025088	45025088	+	RNA	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:45025088C>A	uc003tmk.3	-	1		c.1149G>T			C7orf40_uc003tml.3_Intron|SNORA9_uc003tmm.2_RNA					Homo sapiens cDNA FLJ38860 fis, clone MESAN2011977.												0						ACCGCAGACCCAAGCACGCTG	0.537													9	24					0.000219431	0.000226057	0.002450	1	0
PKD1L1	168507	broad.mit.edu	37	7	47898286	47898286	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:47898286G>C	uc003tny.1	-	27	4347	c.4347C>G	c.(4345-4347)ATC>ATG	p.I1449M		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1449	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ATAAATCTGAGATGACTGTAA	0.398													5	41					0	0	0.001168	0	0
ABCA13	154664	broad.mit.edu	37	7	48288891	48288891	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:48288891A>T	uc003toq.2	+	15	1973	c.1948A>T	c.(1948-1950)ACT>TCT	p.T650S	ABCA13_uc010kyr.2_Missense_Mutation_p.T153S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	650					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TATCAGGAAGACTTGCGAAGT	0.378													12	19					0	0	0.001855	0	0
ZNF479	90827	broad.mit.edu	37	7	57188238	57188238	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:57188238C>T	uc010kzo.2	-	5	1155	c.884G>A	c.(883-885)AGA>AAA	p.R295K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	295					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTTGTAGGGTCTCTCTCCAGT	0.473													5	55					0	0	0.001168	0	0
ZNF117	51351	broad.mit.edu	37	7	64439383	64439383	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:64439383T>C	uc003ttr.2	-	4	1851	c.566A>G	c.(565-567)GAA>GGA	p.E189G		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	189						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				GGGTTTCTCTTCAGTATGAAT	0.363													5	49					0	0	0.006214	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72333464	72333464	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:72333464C>T	uc010lal.1	-	1		c.6192G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCAGGTTCTTCTAGATGATCT	0.512													77	125					0	0	0.003610	0	0
GTF2IRD2B	389524	broad.mit.edu	37	7	74564125	74564125	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:74564125G>C	uc003ubt.2	+	16	2087	c.1872G>C	c.(1870-1872)ATG>ATC	p.M624I	GTF2IRD2B_uc010lcd.2_Missense_Mutation_p.M377I|GTF2IRD2B_uc003ubu.2_Missense_Mutation_p.M454I	NM_001003795	NP_001003795	Q6EKJ0	GTD2B_HUMAN	GTF2I repeat domain containing 2B	624					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ccccagcgatggtggatgcca	0													7	17					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82584480	82584480	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:82584480G>T	uc003uhx.2	-	5	6078	c.5789C>A	c.(5788-5790)GCT>GAT	p.A1930D	PCLO_uc003uhv.2_Missense_Mutation_p.A1930D	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1861					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGCTGGAAAAGCTTTGTATTT	0.358													12	14					6.72482e-11	7.1706e-11	0.003163	1	0
ZNF394	84124	broad.mit.edu	37	7	99091155	99091155	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:99091155T>C	uc003uqs.2	-	3	1844	c.1683A>G	c.(1681-1683)CTA>CTG	p.L561L	ZNF394_uc003uqt.2_Silent_p.L354L	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	561					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					gctgggattataggcgtgagc	0.139													12	124					0	0	0.003330	0	0
AZGP1	563	broad.mit.edu	37	7	99569478	99569478	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:99569478C>A	uc003ush.2	-	2	272	c.228G>T	c.(226-228)CAG>CAT	p.Q76H		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	76					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TTCCTTCCACCTGTCTCCAGA	0.512													15	337					3.41278e-10	3.6287e-10	0.004990	1	0
Unknown	0	broad.mit.edu	37	7	99578454	99578454	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:99578454T>C	uc003usi.2	+	1	70	c.59T>C	c.(58-60)CTC>CCC	p.L20P						RecName: Full=Putative zinc-alpha-2-glycoprotein-like 2; Flags: Precursor;																		CCTGCTGTCCTCCAGGAGACC	0.572													23	892					0	0	0.004289	0	0
ORAI2	80228	broad.mit.edu	37	7	102087396	102087396	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:102087396C>G	uc010lhz.1	+	4	897	c.662C>G	c.(661-663)TCC>TGC	p.S221C	ORAI2_uc003uzj.2_Missense_Mutation_p.S221C|ORAI2_uc003uzk.2_Missense_Mutation_p.S221C|ORAI2_uc011kks.1_Missense_Mutation_p.S144C	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator	221						integral to membrane	protein binding			ovary(1)|kidney(1)	2						TTCTACCGCTCCCTGGTGCGC	0.637													8	12					0	0	0.003080	0	0
DOCK4	9732	broad.mit.edu	37	7	111382090	111382090	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:111382090C>T	uc003vfx.2	-	44	5018	c.4749G>A	c.(4747-4749)ATG>ATA	p.M1583I	DOCK4_uc011kml.1_Missense_Mutation_p.M464I|DOCK4_uc011kmm.1_Missense_Mutation_p.M490I|DOCK4_uc003vfw.2_Missense_Mutation_p.M1033I|DOCK4_uc003vfy.2_Missense_Mutation_p.M1628I|DOCK4_uc003vfv.2_5'Flank	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1583	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				AGCTCGACTTCATCACAAAGA	0.453													4	39					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	7	124116642	124116642	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:124116642G>C	uc011kod.1	+	1	218	c.218G>C	c.(217-219)AGA>ACA	p.R73T		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		AGGAAAGATAGAGAATGCTAC	0.418													38	27					0	0	0.004289	0	0
LRRC4	64101	broad.mit.edu	37	7	127670234	127670234	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:127670234G>A	uc003vmk.2	-	2	597	c.460C>T	c.(460-462)CTT>TTT	p.L154F	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	154	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		TTGTTGCGAAGCCAGAGCTCC	0.597													6	27					0	0	0.003080	0	0
OR2A14	135941	broad.mit.edu	37	7	143826478	143826478	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826478C>G	uc011kua.1	+	1	273	c.273C>G	c.(271-273)ATC>ATG	p.I91M		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AAAGCACCATCTCCTTTTTTC	0.438													14	311					0	0	0.001855	0	0
OR2A14	135941	broad.mit.edu	37	7	143826553	143826554	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826553_143826554GA>TT	uc011kua.1	+	1	348_349	c.348_349GA>TT	c.(346-351)GTGATG>GTTTTG	p.M117L		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TTTTGGTGGTGATGTCCTATGA	0.47													27	295					0	0	0.004672	0	0
OR2A14	135941	broad.mit.edu	37	7	143826826	143826826	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826826G>A	uc011kua.1	+	1	621	c.621G>A	c.(619-621)GTG>GTA	p.V207V		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TCATCCTGGTGGGGCCACTCT	0.587													13	352					0	0	0.013537	0	0
OR2A14	135941	broad.mit.edu	37	7	143826830	143826830	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826830C>T	uc011kua.1	+	1	625	c.625C>T	c.(625-627)CCA>TCA	p.P209S		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCTGGTGGGGCCACTCTGCCT	0.592													13	342					0	0	0.013537	0	0
OR2A14	135941	broad.mit.edu	37	7	143826853	143826853	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826853C>T	uc011kua.1	+	1	648	c.648C>T	c.(646-648)TCC>TCT	p.S216S		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TGCTGGTCTCCTACTTGCGCA	0.612													12	344					0	0	0.010729	0	0
OR2A14	135941	broad.mit.edu	37	7	143826895	143826895	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826895G>C	uc011kua.1	+	1	690	c.690G>C	c.(688-690)GGG>GGC	p.G230G		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TCCAGTCTGGGGAGGGCCGCA	0.612													19	316					0	0	0.006122	0	0
OR2A14	135941	broad.mit.edu	37	7	143826919	143826919	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826919C>T	uc011kua.1	+	1	714	c.714C>T	c.(712-714)TCC>TCT	p.S238S		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGGCCTTCTCCACCTGCTCCT	0.622													16	305					0	0	0.003163	0	0
OR2A14	135941	broad.mit.edu	37	7	143826937	143826937	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826937T>C	uc011kua.1	+	1	732	c.732T>C	c.(730-732)CTT>CTC	p.L244L		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCTCCCACCTTTGCGTGGTGG	0.592													12	290					0	0	0.013537	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439470	150439470	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:150439470T>C	uc003whr.1	+	3	595	c.243T>C	c.(241-243)GTT>GTC	p.V81V	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	81	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCTGGTGGTTGACACGCCCT	0.597													12	109					0	0	0.010729	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439764	150439764	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:150439764G>A	uc003whr.1	+	3	889	c.537G>A	c.(535-537)GAG>GAA	p.E179E	GIMAP5_uc010lpu.2_Silent_p.E37E	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	179	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGTGCGGGAGTGTGAGAGAA	0.582													10	271					0	0	0.008291	0	0
NOM1	64434	broad.mit.edu	37	7	156755857	156755857	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:156755857G>C	uc003wmy.2	+	6	1914	c.1899G>C	c.(1897-1899)CAG>CAC	p.Q633H	NOM1_uc010lqp.1_Missense_Mutation_p.Q82H	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	633					RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		TGCAGAAGCAGCTTGTGGGGA	0.622													16	9					0	0	0.004007	0	0
RP1L1	94137	broad.mit.edu	37	8	10465197	10465197	+	Silent	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:10465197A>T	uc003wtc.2	-	4	6640	c.6411T>A	c.(6409-6411)GCT>GCA	p.A2137A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2137					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCTCCCCTTCAGCCTCTGGGG	0.617													18	614					0	0	0.013726	0	0
DLC1	10395	broad.mit.edu	37	8	12947948	12947948	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:12947948G>T	uc003wwm.2	-	15	4331	c.3887C>A	c.(3886-3888)TCC>TAC	p.S1296Y	DLC1_uc003wwk.1_Missense_Mutation_p.S859Y|DLC1_uc003wwl.1_Missense_Mutation_p.S893Y|DLC1_uc011kxx.1_Missense_Mutation_p.S785Y	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1296					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TTCGGTATAGGAATTACGACA	0.522													12	12					4.36969e-10	4.63739e-10	0.001855	1	0
LYN	4067	broad.mit.edu	37	8	56854438	56854438	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:56854438A>T	uc003xsk.3	+	2	302	c.20A>T	c.(19-21)AAA>ATA	p.K7I	LYN_uc003xsl.3_Missense_Mutation_p.K7I	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	7					erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			ATAAAATCAAAAGGGAAAGAC	0.348													7	17					0	0	0.001984	0	0
C8orf44	56260	broad.mit.edu	37	8	67590097	67590097	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:67590097A>G	uc003xwo.1	+	2	307	c.154A>G	c.(154-156)AAG>GAG	p.K52E	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Missense_Mutation_p.K52E	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	52											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			ttgggaggccaaggcaggcag	0.139													6	60					0	0	0.003163	0	0
C8orf44	56260	broad.mit.edu	37	8	67591973	67591973	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:67591973G>C	uc003xwo.1	+	3	417	c.264G>C	c.(262-264)CTG>CTC	p.L88L	SGK3_uc003xwp.2_5'UTR|C8orf44_uc003xwq.1_Silent_p.L88L	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	88											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			AATTATTTCTGAATTATCAGT	0.413													10	31					0	0	0.008291	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346541	92346541	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:92346541G>C	uc003yex.2	+	7	939	c.661G>C	c.(661-663)GAA>CAA	p.E221Q	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.E221Q|SLC26A7_uc003yfa.2_Missense_Mutation_p.E221Q	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	221	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			ATATGTTTTTGAAAACATCAA	0.343													14	39					0	0	0.003163	0	0
C8orf85	441376	broad.mit.edu	37	8	117954820	117954820	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:117954820C>G	uc003yof.2	+	2	367	c.348C>G	c.(346-348)CAC>CAG	p.H116Q		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	116											0						TCCAAAACCACCAGCTGGCTA	0.368													5	53					0	0	0.001168	0	0
DEPDC6	64798	broad.mit.edu	37	8	120977640	120977640	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:120977640C>T	uc003yow.3	+	4	781	c.594C>T	c.(592-594)ATC>ATT	p.I198I	DEPDC6_uc011lid.1_Silent_p.I97I	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	198	DEP 2.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AGCATGGCATCATCCAGCATG	0.328													15	62					0	0	0.003163	0	0
COL14A1	7373	broad.mit.edu	37	8	121313001	121313001	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:121313001C>T	uc003yox.2	+	36	4610	c.4345C>T	c.(4345-4347)CAT>TAT	p.H1449Y	COL14A1_uc003yoz.2_Missense_Mutation_p.H414Y	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1449	Nonhelical region (NC4).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AGACCTTCCCCATTCCTGCTC	0.428													21	140					0	0	0.004656	0	0
HAS2	3037	broad.mit.edu	37	8	122641224	122641224	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:122641224G>C	uc003yph.2	-	2	895	c.357C>G	c.(355-357)GTC>GTG	p.V119V		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	119	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			TCCCATCTATGACCATGACAA	0.428													17	92					0	0	0.008871	0	0
FAM135B	51059	broad.mit.edu	37	8	139207509	139207509	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:139207509C>G	uc003yuy.2	-	9	1036	c.865G>C	c.(865-867)GAG>CAG	p.E289Q	FAM135B_uc003yux.2_Missense_Mutation_p.E190Q|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	289										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACCTGTAGCTCTGAGCACAGC	0.433										HNSCC(54;0.14)			4	61					0	0	0.009096	0	0
ACO1	48	broad.mit.edu	37	9	32421017	32421017	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:32421017T>C	uc003zqw.3	+	8	1117	c.962T>C	c.(961-963)GTG>GCG	p.V321A	ACO1_uc010mjh.1_Missense_Mutation_p.V155A|ACO1_uc003zqx.3_Missense_Mutation_p.V321A|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	321					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		ACGTACCTGGTGCAAACAGGT	0.478													9	99					0	0	0.004482	0	0
PRSS3	5646	broad.mit.edu	37	9	33798037	33798037	+	Silent	SNP	T	C	C	rs138553179	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:33798037T>C	uc003ztj.3	+	3	582	c.582T>C	c.(580-582)ACT>ACC	p.T194T	uc003ztk.1_Intron|PRSS3_uc003zti.3_Silent_p.T151T|PRSS3_uc003ztl.3_Silent_p.T137T	NM_007343	NP_031369	P35030	TRY3_HUMAN	mesotrypsin isoform 1 preproprotein	194	Peptidase S1.				digestion|endothelial cell migration|zymogen activation	extracellular space	calcium ion binding|protein binding|serine-type endopeptidase activity|serine-type peptidase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)			CTGCTGGCACTGAGTGCCTCA	0.562													6	77					0	0	0.001855	0	0
KIAA1045	23349	broad.mit.edu	37	9	34977167	34977167	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:34977167G>C	uc003zvq.2	+	6	1115	c.937G>C	c.(937-939)GAG>CAG	p.E313Q	KIAA1045_uc003zvr.2_Missense_Mutation_p.E313Q	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	313							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			CACCGTCAGTGAGGCAGAGTG	0.627													9	52					0	0	0.006214	0	0
VCP	7415	broad.mit.edu	37	9	35068292	35068292	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:35068292C>G	uc003zvy.2	-	2	474	c.85G>C	c.(85-87)GAT>CAT	p.D29H	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_5'UTR	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	29					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			ATGGCTTCATCAACAATTAAC	0.453													64	40					0	0	0.003610	0	0
SPAG8	26206	broad.mit.edu	37	9	35812129	35812129	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:35812129A>G	uc003zye.2	-	1	131	c.16T>C	c.(16-18)TCT>CCT	p.S6P	SPAG8_uc003zyf.2_5'UTR|SPAG8_uc003zyg.2_Missense_Mutation_p.S6P	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	6						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			CCCTCCGTAGACTCGTTGGTC	0.597													11	11					0	0	0.013537	0	0
KIF27	55582	broad.mit.edu	37	9	86530261	86530261	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:86530261G>C	uc004ana.2	-	2	390	c.246C>G	c.(244-246)GCC>GCG	p.A82A	KIF27_uc010mpw.2_Silent_p.A82A|KIF27_uc010mpx.2_Silent_p.A82A	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	82	Kinesin-motor.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TTTGTCCATAGGCAAAAACAG	0.383													4	21					0	0	0.003080	0	0
NOL8	55035	broad.mit.edu	37	9	95077986	95077986	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:95077986T>C	uc004arv.2	-	7	1258	c.921A>G	c.(919-921)GAA>GAG	p.E307E	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Silent_p.E239E	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	307					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						TCATTCTCAATTCATCTTCAG	0.348													7	9					0	0	0.003080	0	0
SMC2	10592	broad.mit.edu	37	9	106874063	106874063	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:106874063G>C	uc004bbv.2	+	10	1510	c.1222G>C	c.(1222-1224)GAT>CAT	p.D408H	SMC2_uc004bbu.1_Missense_Mutation_p.D408H|SMC2_uc004bbw.2_Missense_Mutation_p.D408H|SMC2_uc011lvl.1_Missense_Mutation_p.D408H|SMC2_uc010mtg.1_Missense_Mutation_p.D263H|SMC2_uc010mth.1_Missense_Mutation_p.D358H|SMC2_uc004bbx.2_Missense_Mutation_p.D408H	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	408	Potential.				cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity	p.D408N(1)		ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						CTGTAAAAATGATATAAGTAA	0.403													6	8					0	0	0.001984	0	0
RGS3	5998	broad.mit.edu	37	9	116357878	116357878	+	Splice_Site	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:116357878G>A	uc004bhq.2	+	25	3454	c.3245_splice	c.e25-1	p.Y1082_splice	RGS3_uc004bhs.2_Splice_Site_p.Y972_splice|RGS3_uc004bht.2_Splice_Site_p.Y801_splice|RGS3_uc010muy.2_Splice_Site_p.Y475_splice|RGS3_uc004bhv.2_Splice_Site_p.Y403_splice|RGS3_uc004bhw.2_Splice_Site_p.Y52_splice|RGS3_uc011lxh.1_Splice_Site_p.Y392_splice|RGS3_uc004bhx.2_Splice_Site_p.Y403_splice|RGS3_uc004bhz.2_Splice_Site_p.Y424_splice|RGS3_uc004bia.2_Splice_Site_p.Y195_splice	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6						inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TCTCCTCACAGACGGGTTAGC	0.522													4	34					0	0	0.009096	0	0
LHX6	26468	broad.mit.edu	37	9	124975947	124975947	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:124975947T>C	uc010mvw.2	-	7	1014	c.905A>G	c.(904-906)CAC>CGC	p.H302R	LHX6_uc004blx.3_Missense_Mutation_p.H331R|LHX6_uc004bly.3_Missense_Mutation_p.H331R	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	302					cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGGGGTGTAGTGGATGTCGTC	0.697													19	43					0	0	0.007413	0	0
OR1J1	347168	broad.mit.edu	37	9	125239256	125239256	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:125239256A>G	uc011lyu.1	-	1	950	c.950T>C	c.(949-951)CTC>CCC	p.L317P	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						caaagtgttgagattacaggc	0.124													13	62					0	0	0.012319	0	0
OR1B1	347169	broad.mit.edu	37	9	125391689	125391689	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:125391689C>G	uc011lyz.1	-	1	126	c.126G>C	c.(124-126)CTG>CTC	p.L42L		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	42	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCACATTCCCCAGTATGGTGG	0.507													13	86					0	0	0.001855	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129871003	129871003	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:129871003G>C	uc004bqr.1	-	2	508	c.8C>G	c.(7-9)CCA>CGA	p.P3R	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	3					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						CACGCACAGTGGCCTCATGGT	0.537													6	29					0	0	0.001984	0	0
STXBP1	6812	broad.mit.edu	37	9	130416009	130416009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:130416009C>T	uc004brl.2	+	3	300	c.103C>T	c.(103-105)CAG>TAG	p.Q35*	STXBP1_uc004brk.2_Nonsense_Mutation_p.Q35*	NM_001032221	NP_001027392	P61764	STXB1_HUMAN	syntaxin binding protein 1 isoform b	35					axon target recognition|energy reserve metabolic process|glutamate secretion|negative regulation of synaptic transmission, GABAergic|neurotransmitter secretion|platelet aggregation|platelet degranulation|protein transport|regulation of insulin secretion|regulation of synaptic vesicle priming|synaptic vesicle maturation|vesicle docking involved in exocytosis	cytosol|mitochondrion|plasma membrane|platelet alpha granule|protein complex	identical protein binding|syntaxin-1 binding|syntaxin-2 binding			skin(1)	1						GGTGGTGGATCAGTTAAGCAT	0.522													20	48					0	0	0.002299	0	0
TOR2A	27433	broad.mit.edu	37	9	130494381	130494381	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:130494381C>T	uc004brs.3	-	5	953	c.898G>A	c.(898-900)GAA>AAA	p.E300K	TOR2A_uc004brt.3_3'UTR|TOR2A_uc004brw.3_3'UTR|TOR2A_uc011maj.1_3'UTR|TOR2A_uc004bru.3_Missense_Mutation_p.E138K|TOR2A_uc004brv.3_RNA|TOR2A_uc004brx.1_3'UTR	NM_001085347	NP_001078816	Q5JU69	TOR2A_HUMAN	torsin family 2, member A isoform a	300					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum|extracellular region	ATP binding|nucleoside-triphosphatase activity				0						TGCTCGTCTTCAGGGAAGAAG	0.632													31	50					0	0	0.009535	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130674558	130674558	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:130674558C>T	uc004bss.2	-	4	876	c.600G>A	c.(598-600)ACG>ACA	p.T200T	ST6GALNAC4_uc004bst.2_Silent_p.T116T	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	200	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						GGTTCTTGCCCGTCTCGTCCT	0.637													14	68					0	0	0.001855	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130674582	130674582	+	Silent	SNP	G	A	A	rs148599736		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:130674582G>A	uc004bss.2	-	4	852	c.576C>T	c.(574-576)TGC>TGT	p.C192C	ST6GALNAC4_uc004bst.2_Silent_p.C108C	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	192	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						AGATCTGGTCGCAGTAGGCCA	0.662													7	79					0	0	0.001984	0	0
CERCAM	51148	broad.mit.edu	37	9	131190594	131190594	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:131190594C>T	uc004buz.3	+	6	1178	c.780C>T	c.(778-780)CAC>CAT	p.H260H	CERCAM_uc004buy.1_Silent_p.H182H|CERCAM_uc010mxz.2_Silent_p.H182H|CERCAM_uc010mya.1_Silent_p.H101H	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	260					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						TCTCCGTCCACGTGTGCAATG	0.383													14	31					0	0	0.001855	0	0
NUP214	8021	broad.mit.edu	37	9	134103621	134103621	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:134103621G>C	uc004cag.2	+	33	6088	c.5977G>C	c.(5977-5979)GCA>CCA	p.A1993P	NUP214_uc004cah.2_Missense_Mutation_p.A1983P|NUP214_uc004cai.2_Missense_Mutation_p.A1423P|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.A819P	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1993	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AGGGGTGCCAGCATTCGGTTC	0.597			T	DEK|SET|ABL1	AML|T-ALL								21	59					0	0	0.008871	0	0
TTF1	7270	broad.mit.edu	37	9	135251335	135251335	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:135251335A>G	uc004cbl.2	-	11	2737	c.2685T>C	c.(2683-2685)AGT>AGC	p.S895S	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Silent_p.S380S	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	895					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		ctcccaaagtactggaattac	0.109													4	31					0	0	0.003080	0	0
RALGDS	5900	broad.mit.edu	37	9	135985721	135985721	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:135985721G>A	uc004cco.2	-	3	470	c.450C>T	c.(448-450)TTC>TTT	p.F150F	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Silent_p.F150F|RALGDS_uc004ccr.2_Silent_p.F149F|RALGDS_uc011mcv.1_Silent_p.F133F|RALGDS_uc004ccs.2_Silent_p.F95F|RALGDS_uc011mcw.1_Silent_p.F221F|RALGDS_uc004ccv.1_5'Flank|RALGDS_uc004ccu.1_5'Flank	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	150	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GGGTGGTGGTGAAGGCTCTAT	0.542			T	CIITA	PMBL|Hodgkin Lymphona|								29	49					0	0	0.010818	0	0
SNAPC4	6621	broad.mit.edu	37	9	139276445	139276445	+	Silent	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:139276445C>G	uc004chh.2	-	17	2157	c.2148G>C	c.(2146-2148)GTG>GTC	p.V716V		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	716					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		GTAGCCACTGCACATGGGATC	0.662													7	20					0	0	0.001984	0	0
FAM166A	401565	broad.mit.edu	37	9	140138185	140138185	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:140138185C>G	uc004cmi.1	-	7	976	c.921G>C	c.(919-921)TGG>TGC	p.W307C		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	307										ovary(1)	1						CCCATTCCTTCCAGTAGGCCC	0.557													62	138					0	0	0.003610	0	0
SHOX	6473	broad.mit.edu	37	X	591655	591655	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:591655T>A	uc004cph.1	+	2	714	c.23T>A	c.(22-24)GTA>GAA	p.V8E	SHOX_uc004cpi.2_Missense_Mutation_p.V8E	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	8					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				ACGGCTTTTGTATCCAAGTCT	0.642													44	140					0	0	0.003610	0	0
CSF2RA	1438	broad.mit.edu	37	X	1428369	1428369	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:1428369C>A	uc010nct.2	+	14	1522	c.1200C>A	c.(1198-1200)ACC>ACA	p.T400T	CSF2RA_uc004cpq.2_3'UTR|CSF2RA_uc004cpn.2_Silent_p.T400T|CSF2RA_uc004cpo.2_Silent_p.T400T|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Silent_p.T267T|CSF2RA_uc004cpp.2_Missense_Mutation_p.L341M|CSF2RA_uc010ncv.2_Silent_p.T434T|CSF2RA_uc004cpr.2_3'UTR	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	400	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGGAAATTACCTGAGACCCAG	0.502													107	93					8.98033e-41	9.79831e-41	0.003610	1	0
NLGN4X	57502	broad.mit.edu	37	X	5821894	5821894	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:5821894C>T	uc010ndh.2	-	5	1326	c.825G>A	c.(823-825)AAG>AAA	p.K275K	NLGN4X_uc004crp.2_Silent_p.K295K|NLGN4X_uc004crq.2_Silent_p.K275K|NLGN4X_uc010ndi.2_Silent_p.K312K|NLGN4X_uc004crr.2_Silent_p.K275K|NLGN4X_uc010ndj.2_Silent_p.K275K	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	275	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GAATGATGGCCTTCTGGAAGA	0.522													12	61					0	0	0.013537	0	0
FRMPD4	9758	broad.mit.edu	37	X	12712462	12712462	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:12712462G>C	uc004cuz.1	+	9	1328	c.822G>C	c.(820-822)CAG>CAC	p.Q274H	FRMPD4_uc011mij.1_Missense_Mutation_p.Q266H	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	274	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AGGTGACACAGAGGCCCAGCT	0.458													4	53					0	0	0.001168	0	0
CDKL5	6792	broad.mit.edu	37	X	18622667	18622667	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:18622667G>C	uc004cym.2	+	12	1876	c.1623G>C	c.(1621-1623)TTG>TTC	p.L541F	CDKL5_uc004cyn.2_Missense_Mutation_p.L541F	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	541				L -> W (in Ref. 4; CAA61445).	neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					CGAGAACTTTGCTCAGCCCTT	0.522													34	182					0	0	0.004878	0	0
EIF2S3	1968	broad.mit.edu	37	X	24089770	24089770	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:24089770G>A	uc004dbc.2	+	10	1129	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K		NM_001415	NP_001406	P41091	IF2G_HUMAN	eukaryotic translation initiation factor 2,	370						cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			lung(1)	1						GATATTCACAGAATTGGAAAT	0.433													16	43					0	0	0.004007	0	0
ZFX	7543	broad.mit.edu	37	X	24228686	24228686	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:24228686C>T	uc004dbf.2	+	9	1869	c.1611C>T	c.(1609-1611)CAC>CAT	p.H537H	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Silent_p.H576H|ZFX_uc010nfz.2_Silent_p.H193H	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	537	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						TGAATCGCCACCTCTTGGCAG	0.428													31	113					0	0	0.012213	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329440	24329440	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:24329440G>A	uc011mjw.1	-	1	1993	c.1993C>T	c.(1993-1995)CAG>TAG	p.Q665*		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	665	Gln-rich.										0						TGGGACTGCTGCTGCGGGCCG	0.612													13	114					0	0	0.001855	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212382	26212382	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:26212382A>G	uc004dbr.2	+	2	568	c.419A>G	c.(418-420)CAT>CGT	p.H140R	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	140	Ser-rich.									ovary(3)	3						AGCACTTCCCATGATGTCTCC	0.537													6	98					0	0	0.001984	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29686583	29686583	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:29686583C>T	uc004dby.2	+	6	1248	c.740C>T	c.(739-741)CCT>CTT	p.P247L		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	247	Extracellular (Potential).|Ig-like C2-type 3.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						CTTTTGTATCCTATGGAAAGT	0.368													5	22					0	0	0.000602	0	0
FAM47C	442444	broad.mit.edu	37	X	37028641	37028641	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:37028641G>C	uc004ddl.1	+	1	2172	c.2158G>C	c.(2158-2160)GAG>CAG	p.E720Q		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	720										ovary(3)	3						GGAGCCTCCTGAGAGTCGCGT	0.637													28	67					0	0	0.008361	0	0
FAM47C	442444	broad.mit.edu	37	X	37028848	37028848	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:37028848G>C	uc004ddl.1	+	1	2379	c.2365G>C	c.(2365-2367)GAG>CAG	p.E789Q		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	789										ovary(3)	3						TCTCCACCTGGAGCCTCCCAA	0.632													28	45					0	0	0.013726	0	0
FAM47C	442444	broad.mit.edu	37	X	37029376	37029376	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:37029376G>C	uc004ddl.1	+	1	2907	c.2893G>C	c.(2893-2895)GAA>CAA	p.E965Q		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	965										ovary(3)	3						GCTCGTACTTGAAAAGCCTGA	0.448													18	69					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	X	48163706	48163706	+	Missense_Mutation	SNP	A	C	C	rs3125189		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:48163706A>C	uc010nib.1	-	3	227	c.140T>G	c.(139-141)ATC>AGC	p.I47S		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		ATACACATAGATGATTTTCTC	0.383													5	53					0	0	0.004482	0	0
SSX3	10214	broad.mit.edu	37	X	48207000	48207000	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:48207000C>T	uc004djd.1	-	7	600	c.506G>A	c.(505-507)CGT>CAT	p.R169H		NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						CTTTCTCTCACGCAGTCTGTG	0.502													18	752					0	0	0.006122	0	0
SSX3	10214	broad.mit.edu	37	X	48209493	48209493	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:48209493G>A	uc004djd.1	-	6	489	c.395C>T	c.(394-396)CCA>CTA	p.P132L	SSX3_uc004dje.2_Missense_Mutation_p.P132L	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						ATCGTTTTGTGGGCCAGATGC	0.448													17	483					0	0	0.006122	0	0
PQBP1	10084	broad.mit.edu	37	X	48759680	48759680	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:48759680C>A	uc004dle.2	+	5	652	c.463C>A	c.(463-465)CGA>AGA	p.R155R	PQBP1_uc004dlf.2_Silent_p.R155R|PQBP1_uc004dlg.2_Silent_p.R155R|PQBP1_uc004dld.2_Intron|PQBP1_uc004dlh.2_Silent_p.R155R|PQBP1_uc004dli.2_Silent_p.R155R|PQBP1_uc004dlj.1_Silent_p.R155R|PQBP1_uc004dln.2_Silent_p.R155R|PQBP1_uc010nih.2_RNA|PQBP1_uc010nii.2_Silent_p.R113R|PQBP1_uc004dlk.2_Intron|PQBP1_uc004dll.2_Intron|PQBP1_uc004dlm.2_Silent_p.R113R|PQBP1_uc010nij.2_Intron	NM_001032382	NP_001027554	O60828	PQBP1_HUMAN	polyglutamine binding protein 1	155	3-3.|Arg-rich.|7 X 2 AA tandem repeats of [DE]-R.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|transcription coactivator activity			large_intestine(1)	1						AGAGAGAGAGCGAGACAGGGA	0.612													6	65					2.17888e-05	2.26539e-05	0.006214	1	0
SSX8	280659	broad.mit.edu	37	X	52659369	52659369	+	RNA	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52659369T>C	uc011moa.1	+	7		c.866T>C			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAGGGAGTGTCAGAAGCATC	0.428													35	726					0	0	0.003610	0	0
SSX8	280659	broad.mit.edu	37	X	52659452	52659452	+	RNA	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52659452G>C	uc011moa.1	+	7		c.949G>C			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						ATTAATAAGAGATCTGGTAAG	0.493													22	306					0	0	0.002299	0	0
SSX8	280659	broad.mit.edu	37	X	52661890	52661890	+	RNA	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52661890C>G	uc011mob.1	+	7		c.801C>G				NR_027250				Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GTGAGAGAAACCAGCTGGTGA	0.493													25	895					0	0	0.003755	0	0
SSX8	280659	broad.mit.edu	37	X	52662448	52662448	+	RNA	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52662448A>G	uc011mob.1	+	8		c.897A>G				NR_027250				Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAGCAGAACATGGTGACCTT	0.502													11	291					0	0	0.008291	0	0
SSX7	280658	broad.mit.edu	37	X	52677383	52677383	+	Missense_Mutation	SNP	A	G	G	rs149511984		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52677383A>G	uc004dqx.1	-	6	553	c.394T>C	c.(394-396)TCA>CCA	p.S132P		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TCGTTCTGTGAGCCAGATGCT	0.458													58	850					0	0	0.003610	0	0
XAGE5	170627	broad.mit.edu	37	X	52844181	52844181	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52844181A>G	uc004drd.1	+	4	309	c.244A>G	c.(244-246)AGT>GGT	p.S82G		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	82										ovary(1)	1						ATGCGGAGATAGTCCTGATGT	0.433													17	324					0	0	0.004007	0	0
HUWE1	10075	broad.mit.edu	37	X	53577667	53577667	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:53577667C>G	uc004dsp.2	-	66	9850	c.9448G>C	c.(9448-9450)GGT>CGT	p.G3150R	HUWE1_uc004dsn.2_Missense_Mutation_p.G1958R	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3150					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AAGGTGCCACCTCTCTGCACA	0.448													37	58					0	0	0.008740	0	0
SPIN4	139886	broad.mit.edu	37	X	62570307	62570307	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:62570307T>G	uc004dvf.2	-	1	912	c.392A>C	c.(391-393)CAT>CCT	p.H131P		NM_001012968	NP_001012986	Q56A73	SPIN4_HUMAN	spindlin family, member 4	131					gamete generation					ovary(1)|lung(1)	2						CTTGGTACCATGTTCACCTTC	0.488													9	60					0	0	0.008291	0	0
PJA1	64219	broad.mit.edu	37	X	68382865	68382865	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:68382865A>C	uc004dxh.2	-	2	503	c.217T>G	c.(217-219)TCC>GCC	p.S73A	PJA1_uc011mpi.1_5'UTR|PJA1_uc004dxg.2_Missense_Mutation_p.S73A|PJA1_uc004dxi.2_Missense_Mutation_p.S18A	NM_145119	NP_660095	Q8NG27	PJA1_HUMAN	praja 1 isoform a	73							zinc ion binding				0						CGAGTAGTGGAAAATGGCGAT	0.527													53	89					0	0	0.003610	0	0
EDA	1896	broad.mit.edu	37	X	68836505	68836505	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:68836505C>T	uc004dxs.2	+	1	595	c.353C>T	c.(352-354)CCG>CTG	p.P118L	EDA_uc004dxr.2_Missense_Mutation_p.P118L|EDA_uc011mpj.1_Missense_Mutation_p.P118L|EDA_uc004dxn.1_Missense_Mutation_p.P118L|EDA_uc004dxm.1_Missense_Mutation_p.P118L|EDA_uc004dxp.1_Missense_Mutation_p.P118L|EDA_uc004dxq.1_Missense_Mutation_p.P118L|EDA_uc004dxl.1_Missense_Mutation_p.P118L	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	118	Extracellular (Potential).		P -> L (in a colorectal cancer sample; somatic mutation).		cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding	p.P118L(1)		ovary(2)|large_intestine(1)	3						CCATTGGAACCGGGAGAAGCC	0.687													12	60					0	0	0.002450	0	0
TCEAL2	140597	broad.mit.edu	37	X	101382150	101382150	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:101382150A>G	uc004eip.2	+	3	567	c.348A>G	c.(346-348)GGA>GGG	p.G116G		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						agagtgagggagagCCAGAAA	0.249													39	62					0	0	0.003610	0	0
COL4A6	1288	broad.mit.edu	37	X	107420239	107420239	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:107420239G>A	uc004enw.3	-	28	2624	c.2521C>T	c.(2521-2523)CAT>TAT	p.H841Y	COL4A6_uc004env.3_Missense_Mutation_p.H840Y|COL4A6_uc011msn.1_Missense_Mutation_p.H840Y|COL4A6_uc010npk.2_Missense_Mutation_p.H840Y	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	841	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTTCCAGGATGTCCTGAATAA	0.498									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	74					0	0	0.001168	0	0
TRPC5	7224	broad.mit.edu	37	X	111155738	111155738	+	Silent	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:111155738G>C	uc004epl.1	-	3	1600	c.681C>G	c.(679-681)CTC>CTG	p.L227L	TRPC5_uc004epm.1_Silent_p.L227L	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	227	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TGAGCTCCTTGAGCTCCCAGC	0.552													23	125					0	0	0.005443	0	0
WDR44	54521	broad.mit.edu	37	X	117575391	117575391	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:117575391G>A	uc004eqn.2	+	15	2460	c.2035G>A	c.(2035-2037)GAC>AAC	p.D679N	WDR44_uc004eqo.2_Missense_Mutation_p.D679N|WDR44_uc011mtr.1_Intron|WDR44_uc010nqi.2_Missense_Mutation_p.D389N	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	679	WD 3.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						GAACATACCTGACAAAAAAGT	0.403													16	46					0	0	0.006122	0	0
DOCK11	139818	broad.mit.edu	37	X	117819686	117819686	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:117819686G>A	uc004eqp.2	+	53	6201	c.6138G>A	c.(6136-6138)ATG>ATA	p.M2046I	DOCK11_uc004eqq.2_Missense_Mutation_p.M1825I	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	2046					blood coagulation	cytosol	GTP binding			ovary(3)	3						CTCCCTGGATGAGCAACACAT	0.388													17	57					0	0	0.007413	0	0
CT47B1	643311	broad.mit.edu	37	X	120009295	120009295	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:120009295T>C	uc011muc.1	-	1	485	c.230A>G	c.(229-231)CAG>CGG	p.Q77R		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	77											0						GCTCCCGCCCTGGGGGACTGC	0.602													4	56					0	0	0.009096	0	0
FAM127C	441518	broad.mit.edu	37	X	134156271	134156271	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156271C>T	uc004eyc.1	-	1	296	c.219G>A	c.(217-219)ACG>ACA	p.T73T		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	73											0	Acute lymphoblastic leukemia(192;0.000127)					GGGCGGGCCCCGTGAGGCGGG	0.597													20	261					0	0	0.007413	0	0
FAM127C	441518	broad.mit.edu	37	X	134156388	134156388	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156388A>G	uc004eyc.1	-	1	179	c.102T>C	c.(100-102)GAT>GAC	p.D34D		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	34											0	Acute lymphoblastic leukemia(192;0.000127)					CGGTATCGCCATCAAACGTCT	0.632													32	445					0	0	0.010818	0	0
FAM127C	441518	broad.mit.edu	37	X	134156432	134156432	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156432C>T	uc004eyc.1	-	1	135	c.58G>A	c.(58-60)GCG>ACG	p.A20T		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	20											0	Acute lymphoblastic leukemia(192;0.000127)					CAGCGACGCGCCGCGGGCCGG	0.657													13	433					0	0	0.001855	0	0
FAM127C	441518	broad.mit.edu	37	X	134156436	134156436	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156436G>A	uc004eyc.1	-	1	131	c.54C>T	c.(52-54)CCC>CCT	p.P18P		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	18											0	Acute lymphoblastic leukemia(192;0.000127)					GACGCGCCGCGGGCCGGAGGG	0.657													17	437					0	0	0.006122	0	0
FAM127C	441518	broad.mit.edu	37	X	134156466	134156466	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156466C>T	uc004eyc.1	-	1	101	c.24G>A	c.(22-24)ATG>ATA	p.M8I		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	8											0	Acute lymphoblastic leukemia(192;0.000127)					GGAGGGCCTTCATCAGCTGCA	0.697													13	324					0	0	0.002450	0	0
FAM127C	441518	broad.mit.edu	37	X	134156478	134156478	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134156478T>C	uc004eyc.1	-	1	89	c.12A>G	c.(10-12)CGA>CGG	p.R4R		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	4											0	Acute lymphoblastic leukemia(192;0.000127)					TCAGCTGCACTCGACCTTCCA	0.687													22	269					0	0	0.002780	0	0
FAM127A	8933	broad.mit.edu	37	X	134166515	134166515	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134166515C>T	uc004eyd.2	+	1	183	c.102C>T	c.(100-102)GAC>GAT	p.D34D	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	34											0	Acute lymphoblastic leukemia(192;0.000127)					AGACGTTTGACGGCGATACCG	0.627													18	374					0	0	0.006122	0	0
FAM127A	8933	broad.mit.edu	37	X	134166530	134166530	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134166530A>G	uc004eyd.2	+	1	198	c.117A>G	c.(115-117)CGA>CGG	p.R39R	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	39											0	Acute lymphoblastic leukemia(192;0.000127)					ATACCGACCGACTCCCGGAGT	0.617													17	373					0	0	0.004007	0	0
FAM127A	8933	broad.mit.edu	37	X	134166555	134166555	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134166555G>A	uc004eyd.2	+	1	223	c.142G>A	c.(142-144)GGC>AGC	p.G48S	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	48											0	Acute lymphoblastic leukemia(192;0.000127)					CGTGCAGACGGGCTCCTACAT	0.637													24	315					0	0	0.002299	0	0
FAM127B	26071	broad.mit.edu	37	X	134185914	134185914	+	Silent	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134185914T>G	uc004eyf.2	-	1	308	c.225A>C	c.(223-225)CCA>CCC	p.P75P	FAM127B_uc004eyg.3_Intron	NM_001078172	NP_001071640	Q9BWD3	F127B_HUMAN	family with sequence similarity 127, member B	75											0	Acute lymphoblastic leukemia(192;0.000127)					ACTGCAGGGCTGGCCCCGTGA	0.597													6	86					0	0	0.001168	0	0
FAM127B	26071	broad.mit.edu	37	X	134186098	134186099	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:134186098_134186099CC>AA	uc004eyf.2	-	1	123_124	c.40_41GG>TT	c.(40-42)GGG>TTG	p.G14L	FAM127B_uc004eyg.3_Missense_Mutation_p.G14L	NM_001078172	NP_001071640	Q9BWD3	F127B_HUMAN	family with sequence similarity 127, member B	14											0	Acute lymphoblastic leukemia(192;0.000127)					CCGGAGGGGCCCGGCCAGGAGG	0.693													9	116					0	0	0.004672	0	0
GPR112	139378	broad.mit.edu	37	X	135427881	135427881	+	Silent	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:135427881C>A	uc004ezu.1	+	6	2307	c.2016C>A	c.(2014-2016)ACC>ACA	p.T672T	GPR112_uc010nsb.1_Silent_p.T467T|GPR112_uc010nsc.1_Silent_p.T439T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	672	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACACAACCACCATACTCACAT	0.428													10	87					2.17888e-05	2.26539e-05	0.006214	1	0
SOX3	6658	broad.mit.edu	37	X	139586071	139586071	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:139586071G>A	uc004fbd.1	-	1	1155	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	385					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					AGTGCGATGCGATGGCGGGCG	0.582													10	15					0	0	0.006214	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995720	140995720	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:140995720A>C	uc004fbt.2	+	4	2816	c.2530A>C	c.(2530-2532)AAG>CAG	p.K844Q	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	844							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTCTTTCCAAGAGTTCCCC	0.542										HNSCC(15;0.026)			11	472					0	0	0.007291	0	0
AFF2	2334	broad.mit.edu	37	X	147743790	147743790	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:147743790T>C	uc004fcp.2	+	3	1021	c.542T>C	c.(541-543)ATG>ACG	p.M181T	AFF2_uc004fco.2_Missense_Mutation_p.M177T|AFF2_uc004fcq.2_Missense_Mutation_p.M177T|AFF2_uc004fcr.2_Missense_Mutation_p.M177T|AFF2_uc011mxb.1_Missense_Mutation_p.M181T|AFF2_uc004fcs.2_Missense_Mutation_p.M177T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	181					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAACAAGATGCAGACTTTG	0.478													38	89					0	0	0.007835	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896333	151896333	+	RNA	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151896333C>T	uc004fgb.2	-	4		c.434G>A						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGTTCCCTTCCGGGTTGTCTT	0.527													24	461					0	0	0.009535	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896346	151896346	+	RNA	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151896346C>G	uc004fgb.2	-	4		c.421G>C						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GTTGTCTTGGCAACCTGGAAA	0.527													31	428					0	0	0.004878	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896589	151896589	+	RNA	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151896589C>A	uc004fgb.2	-	3		c.388G>T						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGTTGTTGGACAATGGGCTGG	0.557													32	800					2.61193e-14	2.80633e-14	0.009535	1	0
MAGEA12	4111	broad.mit.edu	37	X	151896643	151896644	+	RNA	DNP	CA	GT	GT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151896643_151896644CA>GT	uc004fgb.2	-	3		c.333_334TG>AC						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTGTCTCTCAACAGTCTACT	0.421													44	606					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899914	151899914	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151899914C>T	uc010ntp.2	-	3	1241	c.887G>A	c.(886-888)GGA>GAA	p.G296E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.G296E	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	296	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AATGTGAGGTCCTCCACTGAT	0.557													48	698					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899921	151899921	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151899921T>C	uc010ntp.2	-	3	1234	c.880A>G	c.(880-882)AGT>GGT	p.S294G	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S294G	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	294	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGTCCTCCACTGATCTTTAGC	0.562													30	730					0	0	0.003271	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900053	151900053	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900053A>G	uc010ntp.2	-	3	1102	c.748T>C	c.(748-750)TTG>CTG	p.L250L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L250L	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	250	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGCACCAAATCTTGGGTG	0.572													23	597					0	0	0.006320	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900060	151900061	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900060_151900061GG>CA	uc010ntp.2	-	3	1094_1095	c.740_741CC>TG	c.(739-741)ACC>ATG	p.T247M	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.T247M	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	247	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAATCTTGGGTGAGCAGCTT	0.574													32	583					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900111	151900111	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900111T>C	uc010ntp.2	-	3	1044	c.690A>G	c.(688-690)GCA>GCG	p.A230A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.A230A	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	230	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCATCAGATGCCTCCAACA	0.567													31	614					0	0	0.003755	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900357	151900357	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900357A>G	uc010ntp.2	-	3	798	c.444T>C	c.(442-444)CCT>CCC	p.P148P	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.P148P|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	148	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAGATCACAGGAAAGAAGT	0.512													34	551					0	0	0.012213	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900373	151900373	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900373A>C	uc010ntp.2	-	3	782	c.428T>G	c.(427-429)TTC>TGC	p.F143C	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.F143C|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	143	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GAAGTCCTGGAAATTTCTGAT	0.507													19	529					0	0	0.012319	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900383	151900383	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900383T>G	uc010ntp.2	-	3	772	c.418A>C	c.(418-420)ATC>CTC	p.I140L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.I140L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	140	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AAATTTCTGATGACACTCCCC	0.507													28	511					0	0	0.009535	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900413	151900414	+	Missense_Mutation	DNP	AT	CC	CC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900413_151900414AT>CC	uc010ntp.2	-	3	741_742	c.387_388AT>GG	c.(385-390)CCATTC>CCGGTC	p.F130V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.F130V|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	130	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCCTTTGTGAATGGCTCCCTGG	0.5													25	461					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900460	151900460	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900460G>A	uc010ntp.2	-	3	695	c.341C>T	c.(340-342)GCT>GTT	p.A114V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.A114V|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	114	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AACCAACTCAGCCATCTTCCT	0.502													31	415					0	0	0.007291	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900476	151900476	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900476G>T	uc010ntp.2	-	3	679	c.325C>A	c.(325-327)CTC>ATC	p.L109I	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.L109I|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	109	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTACTGAGTGCTACTTGG	0.507													35	406					0.000409698	0.000421682	0.012213	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900481	151900481	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900481A>G	uc010ntp.2	-	3	674	c.320T>C	c.(319-321)GTA>GCA	p.V107A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.V107A|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	107										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACTGAGTGCTACTTGGAAGCT	0.512													35	400					0	0	0.012213	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900522	151900522	+	Silent	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900522T>C	uc010ntp.2	-	3	633	c.279A>G	c.(277-279)GAA>GAG	p.E93E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.E93E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	93										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTTGGCCCTTCCTGTTCTT	0.542													16	370					0	0	0.004007	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900527	151900527	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900527G>C	uc010ntp.2	-	3	628	c.274C>G	c.(274-276)CAG>GAG	p.Q92E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.Q92E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	92										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCCTTCCTGTTCTTCGTTG	0.537													19	373					0	0	0.008871	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900533	151900533	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900533C>G	uc010ntp.2	-	3	622	c.268G>C	c.(268-270)GAA>CAA	p.E90Q	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.E90Q|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	90										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGTTCTTCGTTGCTGGAG	0.542													25	369					0	0	0.005443	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900558	151900558	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900558A>T	uc010ntp.2	-	3	597	c.243T>A	c.(241-243)AGT>AGA	p.S81R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S81R|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	81										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CATCGGATTGACTCCAGAGAG	0.582													27	377					0	0	0.005443	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900564	151900564	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900564G>A	uc010ntp.2	-	3	591	c.237C>T	c.(235-237)CTC>CTT	p.L79L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L79L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	79										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ATTGACTCCAGAGAGTATAGT	0.577													24	385					0	0	0.003954	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900570	151900570	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900570A>G	uc010ntp.2	-	3	585	c.231T>C	c.(229-231)TAT>TAC	p.Y77Y	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.Y77Y|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	77										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGAGAGTATAGTTGATGG	0.577													26	387					0	0	0.005443	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900684	151900684	+	Silent	SNP	G	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900684G>A	uc010ntp.2	-	3	471	c.117C>T	c.(115-117)GCC>GCT	p.A39A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.A39A|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	39										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGAGGAGGCAGTCTCCT	0.647													19	267					0	0	0.010504	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900687	151900687	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900687A>G	uc010ntp.2	-	3	468	c.114T>C	c.(112-114)ACT>ACC	p.T38T	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.T38T|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	38										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGAGGCAGTCTCCTGCT	0.642													13	266					0	0	0.003163	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900692	151900692	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900692C>G	uc010ntp.2	-	3	463	c.109G>C	c.(109-111)GAG>CAG	p.E37Q	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.E37Q|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	37										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GAGGCAGTCTCCTGCTCCTCA	0.637													11	255					0	0	0.013537	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900728	151900728	+	Silent	SNP	A	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900728A>G	uc010ntp.2	-	3	427	c.73T>C	c.(73-75)TTG>CTG	p.L25L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L25L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	25										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCACCCACCAAGCCCAGGGCC	0.627													28	202					0	0	0.008361	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900745	151900745	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900745T>C	uc010ntp.2	-	3	410	c.56A>G	c.(55-57)CAA>CGA	p.Q19R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.Q19R|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	19										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCTCTCCTTGGGCCTCAAG	0.617													24	180					0	0	0.004656	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900762	151900762	+	Silent	SNP	C	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151900762C>T	uc010ntp.2	-	3	393	c.39G>A	c.(37-39)GAG>GAA	p.E13E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.E13E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	13										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGGCCTTCCTCAGGCTTGC	0.627													14	148					0	0	0.004007	0	0
CSAG1	158511	broad.mit.edu	37	X	151909164	151909164	+	Missense_Mutation	SNP	A	C	C	rs139700556		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:151909164A>C	uc004fge.2	+	5	521	c.193A>C	c.(193-195)AAG>CAG	p.K65Q	CSAG1_uc004fgf.2_Missense_Mutation_p.K65Q|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	65										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAAAAGGGAAAAGGGACCCGT	0.532													32	632					0	0	0.003610	0	0
EMD	2010	broad.mit.edu	37	X	153609512	153609512	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:153609512C>A	uc004fkl.2	+	6	968	c.720C>A	c.(718-720)TTC>TTA	p.F240L		NM_000117	NP_000108	P50402	EMD_HUMAN	emerin	240	Helical; (Potential).				cellular response to growth factor stimulus|muscle contraction|muscle organ development|negative regulation of catenin import into nucleus|negative regulation of fibroblast proliferation|positive regulation of protein export from nucleus|regulation of canonical Wnt receptor signaling pathway	endoplasmic reticulum|integral to membrane|microtubule|nuclear inner membrane|nuclear outer membrane	actin binding|beta-tubulin binding				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCGTCCTCTTCTTCATTTACC	0.592													33	38					2.80507e-11	2.99669e-11	0.012213	1	0
TMEM52	339456	broad.mit.edu	37	1	1849514	1849514	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:1849514delT	uc001aij.2	-	5	473	c.437delA	c.(436-438)TACfs	p.Y146fs	TMEM52_uc001aii.2_Frame_Shift_Del_p.Y131fs	NM_178545	NP_848640	Q8NDY8	TMM52_HUMAN	transmembrane protein 52 precursor	146						integral to membrane					0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.82e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.75e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GTACAGGCTGTAGGCAGGAGG	0.627													7	256	---	---	---	---					
NBPF1	55672	broad.mit.edu	37	1	16918458	16918459	+	Frame_Shift_Ins	INS	-	GG	GG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:16918458_16918459insGG	uc009vos.1	-	7	946_947	c.58_59insCC	c.(58-60)ATCfs	p.I20fs	NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	20						cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TTTCTCGTTGATTTCTAAAATG	0.525													8	615	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27057930	27057931	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:27057930_27057931insC	uc001bmv.1	+	3	2011_2012	c.1638_1639insC	c.(1636-1641)CAGAGCfs	p.Q546fs	ARID1A_uc001bmt.1_Frame_Shift_Ins_p.Q546fs|ARID1A_uc001bmu.1_Frame_Shift_Ins_p.Q546fs|ARID1A_uc001bmw.1_Frame_Shift_Ins_p.Q163fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	546_547					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.Q546*(1)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AGCACCCCCAGAGCCAGCCCCC	0.649			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								8	1362	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	39112390	39112391	+	IGR	INS	-	CCTCTG	CCTCTG	rs143541526	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:39112390_39112391insCCTCTG								POU3F1 (599940 upstream) : RRAGC (192624 downstream)																							ctctccctctccctctgcctct	0.163													11	34	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	54307532	54307532	+	IGR	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:54307532delA								TMEM48 (3357 upstream) : YIPF1 (9875 downstream)																							cctgggcaacaagagtaaaac	0.264													11	110	---	---	---	---					
RPRD2	23248	broad.mit.edu	37	1	150444330	150444330	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:150444330delT	uc009wlr.2	+	11	3107	c.2906delT	c.(2905-2907)GTCfs	p.V969fs	RPRD2_uc010pcc.1_Intron|RPRD2_uc001eup.3_Frame_Shift_Del_p.V943fs	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	969							protein binding			ovary(1)	1						CCTCACCCAGTCCCACATCGT	0.557													8	1375	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	151742571	151742575	+	IGR	DEL	CCATG	-	-	rs6143423		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:151742571_151742575delCCATG								OAZ3 (-1234 upstream) : OAZ3 (-7130 downstream)																							gagagggagaccatggggagacgga	0.146													8	182	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	152050706	152050707	+	IGR	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152050706_152050707insG								S100A11 (41195 upstream) : TCHHL1 (5913 downstream)																							cttgctctgtcaccaggctgga	0.188													14	543	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	152050707	152050708	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152050707_152050708insC								S100A11 (41196 upstream) : TCHHL1 (5912 downstream)																							ttgctctgtcaccaggctggag	0.183													41	497	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152082123	152082124	+	In_Frame_Ins	INS	-	CTC	CTC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152082123_152082124insCTC	uc001ezp.2	-	2	3569_3570	c.3569_3570insGAG	c.(3568-3570)AAA>AAGAGA	p.1192_1193insR	TCHH_uc009wne.1_In_Frame_Ins_p.1192_1193insR	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1192_1193	10 X 30 AA tandem repeats.|4-10.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cctggcgccttttctcctgttc	0.297													7	232	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:152083818_152083820delCGG	uc001ezp.2	-	2	1873_1875	c.1873_1875delCCG	c.(1873-1875)CCGdel	p.P625del	TCHH_uc009wne.1_In_Frame_Del_p.P625del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	625	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCCTCCGGCTCCTCGCGC	0.680													14	300	---	---	---	---					
LY9	4063	broad.mit.edu	37	1	160765879	160765880	+	5'Flank	DEL	TG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:160765879_160765880delTG	uc001fwu.2	+						LY9_uc001fwt.2_5'Flank|LY9_uc010pjs.1_5'Flank|LY9_uc001fwv.2_5'Flank|LY9_uc001fww.2_5'Flank|LY9_uc001fwx.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a						cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			cacatacacatgcacacacaca	0.381													14	229	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276010	186276011	+	In_Frame_Ins	INS	-	AGG	AGG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276010_186276011insAGG	uc001gru.3	+	7	1210_1211	c.1159_1160insAGG	c.(1159-1161)AAG>AAGGAG	p.387_388insE	PRG4_uc001grt.3_In_Frame_Ins_p.346_347insE|PRG4_uc009wyl.2_In_Frame_Ins_p.294_295insE|PRG4_uc009wym.2_In_Frame_Ins_p.253_254insE|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	387_388	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|6; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CACCACCACCAAGTCTGCACCC	0.634													25	962	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276044	186276046	+	In_Frame_Del	DEL	CCA	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276044_186276046delCCA	uc001gru.3	+	7	1244_1246	c.1193_1195delCCA	c.(1192-1197)CCCACC>CCC	p.T401del	PRG4_uc001grt.3_In_Frame_Del_p.T360del|PRG4_uc009wyl.2_In_Frame_Del_p.T308del|PRG4_uc009wym.2_In_Frame_Del_p.T267del|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	401	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|7.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GAGCCTGCACCCACCACCACCAA	0.650													21	918	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276374	186276376	+	In_Frame_Del	DEL	CCA	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276374_186276376delCCA	uc001gru.3	+	7	1574_1576	c.1523_1525delCCA	c.(1522-1527)CCCACC>CCC	p.T511del	PRG4_uc001grt.3_In_Frame_Del_p.T470del|PRG4_uc009wyl.2_In_Frame_Del_p.T418del|PRG4_uc009wym.2_In_Frame_Del_p.T377del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	511	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|21.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GAGCCTGCACCCACCACCACCAA	0.645													20	1088	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276386	186276388	+	In_Frame_Del	DEL	AGG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276386_186276388delAGG	uc001gru.3	+	7	1586_1588	c.1535_1537delAGG	c.(1534-1539)AAGGAG>AAG	p.E513del	PRG4_uc001grt.3_In_Frame_Del_p.E472del|PRG4_uc009wyl.2_In_Frame_Del_p.E420del|PRG4_uc009wym.2_In_Frame_Del_p.E379del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	513	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|22.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCACCACCAAGGAGCCTTCACC	0.640													19	975	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276548	186276550	+	In_Frame_Del	DEL	AGG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr1:186276548_186276550delAGG	uc001gru.3	+	7	1748_1750	c.1697_1699delAGG	c.(1696-1701)AAGGAG>AAG	p.E567del	PRG4_uc001grt.3_In_Frame_Del_p.E526del|PRG4_uc009wyl.2_In_Frame_Del_p.E474del|PRG4_uc009wym.2_In_Frame_Del_p.E433del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	567	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|29.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCACTCCCAAGGAGCCTGCACC	0.635													7	692	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	35254677	35254677	+	IGR	DEL	T	-	-	rs150201909		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:35254677delT								PARD3 (150754 upstream) : CUL2 (44131 downstream)																							CTGCAGGGGCttttttttttt	0.274													6	12	---	---	---	---					
TACC2	10579	broad.mit.edu	37	10	123970891	123970892	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:123970891_123970892insG	uc001lfv.2	+	9	7311_7312	c.6951_6952insG	c.(6949-6954)TCACCTfs	p.S2317fs	TACC2_uc001lfw.2_Frame_Shift_Ins_p.S463fs|TACC2_uc009xzx.2_Frame_Shift_Ins_p.S2272fs|TACC2_uc010qtv.1_Frame_Shift_Ins_p.S2321fs|TACC2_uc001lfx.2_Frame_Shift_Ins_p.S21fs|TACC2_uc001lfy.2_Frame_Shift_Ins_p.S21fs|TACC2_uc001lfz.2_Frame_Shift_Ins_p.S395fs|TACC2_uc001lga.2_Frame_Shift_Ins_p.S395fs|TACC2_uc009xzy.2_Frame_Shift_Ins_p.S395fs|TACC2_uc001lgb.2_Frame_Shift_Ins_p.S352fs|TACC2_uc010qtw.1_Frame_Shift_Ins_p.S412fs	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2317_2318	SPAZ.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTCCTGCCTCACCTCCCAGATC	0.465													15	384	---	---	---	---					
MKI67	4288	broad.mit.edu	37	10	129903675	129903675	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:129903675delG	uc001lke.2	-	13	6624	c.6429delC	c.(6427-6429)ACCfs	p.T2143fs	MKI67_uc001lkf.2_Frame_Shift_Del_p.T1783fs|MKI67_uc009yav.1_Frame_Shift_Del_p.T1718fs|MKI67_uc009yaw.1_Frame_Shift_Del_p.T1293fs	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2143	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTGTGTGTGTGGTCTGTGTGA	0.498													17	569	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262812	130262812	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr10:130262812delC								MKI67 (338344 upstream) : None (None downstream)																							tcctcctcctccaccatcctc	0.015													7	856	---	---	---	---					
IFITM2	10581	broad.mit.edu	37	11	308212	308213	+	In_Frame_Ins	INS	-	CTT	CTT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:308212_308213insCTT	uc001lox.3	+	1	106_107	c.20_21insCTT	c.(19-21)ACC>ACCTTC	p.8_9insF		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	8_9	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATTGTGCAAACCTTCTCTCCTG	0.574													8	354	---	---	---	---					
KRTAP5-4	387267	broad.mit.edu	37	11	1643238	1643249	+	In_Frame_Del	DEL	CCACAGCCAGAG	-	-	rs142004120	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:1643238_1643249delCCACAGCCAGAG	uc009ycy.1	-	1	120_131	c.33_44delCTCTGGCTGTGG	c.(31-45)GGCTCTGGCTGTGGG>GGG	p.11_15GSGCG>G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	25_29						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		gccacagcccccacagccagagccacagcccc	0.269													13	370	---	---	---	---					
NPAS4	266743	broad.mit.edu	37	11	66191873	66191874	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:66191873_66191874insA	uc001ohx.1	+	7	1688_1689	c.1512_1513insA	c.(1510-1515)TGCACCfs	p.C504fs	NPAS4_uc010rpc.1_Frame_Shift_Ins_p.C294fs	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	504_505					transcription, DNA-dependent		DNA binding|signal transducer activity				0						TGACTCCCTGCACCTCCACCTT	0.589													11	762	---	---	---	---					
KRTAP5-7	440050	broad.mit.edu	37	11	71238403	71238405	+	In_Frame_Del	DEL	CGG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71238403_71238405delCGG	uc001oqq.1	+	1	91_93	c.57_59delCGG	c.(55-60)TCCGGC>TCC	p.G20del		NM_001012503	NP_001012521	Q6L8G8	KRA57_HUMAN	keratin associated protein 5-7	20						keratin filament					0						GCTGTGGCTCCGGCTGTGGGGGC	0.660													8	372	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71276657	71276658	+	In_Frame_Ins	INS	-	GGCTGTGGCTCCGGCTGTGGG	GGCTGTGGCTCCGGCTGTGGG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71276657_71276658insGGCTGTGGCTCCGGCTGTGGG	uc001oqt.1	+	1	49_50	c.24_25insGGCTGTGGCTCCGGCTGTGGG	c.(22-27)insGGCTGTGGCTCCGGCTGTGGG	p.29_30insGCGSGCG		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	29_30						keratin filament				skin(1)	1						GCTGCTCCGGAGGCTGTGGCTC	0.668													219	359	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71277147	71277161	+	In_Frame_Del	DEL	TGCTGTGTCCCCGTG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr11:71277147_71277161delTGCTGTGTCCCCGTG	uc001oqt.1	+	1	539_553	c.514_528delTGCTGTGTCCCCGTG	c.(514-528)TGCTGTGTCCCCGTGdel	p.CCVPV172del		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	172_176	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						ccagtccagctgctgtgtccccgtgtgctgccagt	0.200													60	453	---	---	---	---					
ACSM4	341392	broad.mit.edu	37	12	7469826	7469827	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:7469826_7469827insT	uc001qsx.1	+	4	714_715	c.714_715insT	c.(712-717)ATGGCCfs	p.M238fs		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	238_239					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						TTCCTAAAATGGCCCAGCACTC	0.441													2	4	---	---	---	---					
PRB1	5542	broad.mit.edu	37	12	11506876	11506878	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11506876_11506878delGGA	uc001qzw.1	-	3	196_198	c.159_161delTCC	c.(157-162)CCTCCA>CCA	p.53_54PP>P	PRB1_uc001qzu.1_In_Frame_Del_p.53_54PP>P|PRB1_uc001qzv.1_In_Frame_Del_p.53_54PP>P	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	53_54	1.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGCTTTCCTGGAGGAGGTGGGG	0.581													13	391	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11545986	11545987	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11545986_11545987insGGA	uc010shk.1	-	3	1060_1061	c.1025_1026insTCC	c.(1024-1026)CCA>CCTCCA	p.342_342P>PP		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTGGCTTTCCTGGAGGTGGGGG	0.604													15	403	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546506	11546508	+	In_Frame_Del	DEL	TTG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11546506_11546508delTTG	uc010shk.1	-	3	539_541	c.504_506delCAA	c.(502-507)AACAAG>AAG	p.N168del		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			ACTTCGGGACTTGTTGTCTCCTT	0.596													36	1624	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546691	11546692	+	In_Frame_Ins	INS	-	TTG	TTG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr12:11546691_11546692insTTG	uc010shk.1	-	3	355_356	c.320_321insCAA	c.(319-321)AAG>AACAAG	p.106_107insN		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GACTTCGGGACTTGTCTCCTTG	0.604													49	1884	---	---	---	---					
ATP7B	540	broad.mit.edu	37	13	52536010	52536011	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:52536010_52536011insG	uc001vfw.2	-	6	2065_2066	c.1908_1909insC	c.(1906-1911)CCCAACfs	p.P636fs	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Intron|ATP7B_uc001vfy.2_Frame_Shift_Ins_p.P525fs|ATP7B_uc010tgt.1_Frame_Shift_Ins_p.P636fs|ATP7B_uc010tgu.1_Frame_Shift_Ins_p.P636fs|ATP7B_uc010tgv.1_Frame_Shift_Ins_p.P636fs|ATP7B_uc001vfv.2_5'Flank|ATP7B_uc010tgs.1_5'UTR|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	636_637	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TGATGAGCGTTGGGGTTTCTCT	0.450									Wilson_disease				32	60	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	78233826	78233827	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr13:78233826_78233827insC								SCEL (14430 upstream) : SLAIN1 (38643 downstream)																							ttgctctgtcaccaggctggag	0.168													12	267	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	25042640	25042640	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:25042640delT								CMA1 (65169 upstream) : CTSG (85 downstream)																							cttagacttcttagcctctag	0.025													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	57508916	57508917	+	IGR	INS	-	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:57508916_57508917insA								OTX2 (231732 upstream) : EXOC5 (160279 downstream)																							AGAAAATAAAGAAACACAAAAA	0.421													12	41	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	57511661	57511661	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:57511661delT								OTX2 (234477 upstream) : EXOC5 (157535 downstream)																							TCTTTTTGTGTTTTCTTTATT	0.458													11	66	---	---	---	---					
CLMN	79789	broad.mit.edu	37	14	95669529	95669530	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr14:95669529_95669530insG	uc001yef.2	-	9	2272_2273	c.2156_2157insC	c.(2155-2157)GTTfs	p.V719fs		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	719						integral to membrane	actin binding				0				Epithelial(152;0.193)		GAATGACGGAAACCTTTGAGAG	0.530													8	167	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20434315	20434316	+	IGR	INS	-	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:20434315_20434316insA								None (None upstream) : GOLGA6L6 (302778 downstream)																							ccatctctactaaaatacaaaa	0.000													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22566973	22566974	+	IGR	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:22566973_22566974insG								MIR1268 (53693 upstream) : GOLGA8DP (135311 downstream)																							agagagagagaaaagagacaaa	0.302													15	494	---	---	---	---					
ANPEP	290	broad.mit.edu	37	15	90349638	90349639	+	In_Frame_Ins	INS	-	GAC	GAC			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:90349638_90349639insGAC	uc002bop.3	-	2	468_469	c.176_177insGTC	c.(175-177)CCC>CCGTCC	p.59_60insS		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	59_60	Extracellular.|Cytosolic Ser/Thr-rich junction.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TGGCCGAGGCGGGGTTGGTGGT	0.614													13	1042	---	---	---	---					
ANPEP	290	broad.mit.edu	37	15	90349660	90349662	+	In_Frame_Del	DEL	GAC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr15:90349660_90349662delGAC	uc002bop.3	-	2	445_447	c.153_155delGTC	c.(151-156)CCGTCC>CCC	p.S52del		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	52	Extracellular.|Cytosolic Ser/Thr-rich junction.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GGCTGAGGCGGACGGGGTGGTGG	0.616													20	976	---	---	---	---					
LUC7L	55692	broad.mit.edu	37	16	242961	242961	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:242961delT	uc002cgc.1	-	7	852	c.741delA	c.(739-741)AGAfs	p.R247fs	LUC7L_uc002cga.1_Frame_Shift_Del_p.R247fs|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Frame_Shift_Del_p.R247fs|LUC7L_uc002cgb.1_Frame_Shift_Del_p.R161fs	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	247	Potential.|Arg/Ser-rich.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CCCTCTCCTCTCTCCTCCTCA	0.517													7	541	---	---	---	---					
CLDN6	9074	broad.mit.edu	37	16	3065693	3065694	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:3065693_3065694insG	uc002csu.3	-	2	389_390	c.329_330insC	c.(328-330)GAGfs	p.E110fs		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	110	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGGAATCCTTCTCCTCCACACA	0.609													9	180	---	---	---	---					
ITGAL	3683	broad.mit.edu	37	16	30531249	30531251	+	In_Frame_Del	DEL	GCT	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:30531249_30531251delGCT	uc002dyi.3	+	30	3476_3478	c.3300_3302delGCT	c.(3298-3303)GGGCTG>GGG	p.L1106del	ITGAL_uc002dyj.3_In_Frame_Del_p.L1022del|ITGAL_uc010vev.1_In_Frame_Del_p.L340del	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1106	Helical; (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GCATCGGGGGGCTGCTGCTGCTG	0.601													8	410	---	---	---	---					
FUS	2521	broad.mit.edu	37	16	31201684	31201684	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:31201684delA	uc002ebf.2	+	12	1340	c.1257delA	c.(1255-1257)GGAfs	p.G419fs	FUS_uc002ebh.2_Frame_Shift_Del_p.G418fs|FUS_uc002ebg.2_Frame_Shift_Del_p.G214fs|FUS_uc002ebi.2_Frame_Shift_Del_p.G420fs|FUS_uc002ebj.2_Frame_Shift_Del_p.G215fs|FUS_uc010caj.1_Frame_Shift_Del_p.G110fs	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	419	Arg/Gly-rich.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		gcggtggaggACAGCAGCGAG	0.274			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								7	387	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	60391396	60391397	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr16:60391396_60391397insC								None (None upstream) : None (None downstream)																							ttgctctgtcaccaggctggag	0.168													20	292	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20623697	20623697	+	IGR	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:20623697delA								LGALS9B (252849 upstream) : CCDC144NL (143013 downstream)																							tagagacgggagtttcaccgt	0.000													5	10	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													9	18	---	---	---	---					
VEZF1	7716	broad.mit.edu	37	17	56056586	56056587	+	In_Frame_Ins	INS	-	TGT	TGT			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr17:56056586_56056587insTGT	uc002ivf.1	-	5	1207_1208	c.1064_1065insACA	c.(1063-1065)CAT>CAACAT	p.354_355insQ	VEZF1_uc010dcn.1_In_Frame_Ins_p.204_205insQ	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	354_355					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						AGCTTGTCACAtgttgttgttg	0.317													20	561	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	10153	10154	+	IGR	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:10153_10154insT								None (None upstream) : USP14 (148329 downstream)																							acccttaaccctaacccttaac	0.000													3	6	---	---	---	---					
SEH1L	81929	broad.mit.edu	37	18	12955510	12955510	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr18:12955510delG	uc002krr.2	+	3	349	c.211delG	c.(211-213)GGGfs	p.G71fs	SEH1L_uc002krq.2_Frame_Shift_Del_p.G71fs	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	71	WD 2.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						TCCTGAATTTGGGCAGGTTTT	0.448													13	520	---	---	---	---					
MUC16	94025	broad.mit.edu	37	19	9071219	9071220	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:9071219_9071220insT	uc002mkp.2	-	3	16430_16431	c.16226_16227insA	c.(16225-16227)ACTfs	p.T5409fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5411	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGTGTGCAGTGTCTTTGTA	0.505													7	899	---	---	---	---					
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220352	10220353	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:10220352_10220353insT	uc002mna.2	+	6	559_560	c.559_560insT	c.(559-561)CCCfs	p.P187fs	PPAN-P2RY11_uc010xla.1_Frame_Shift_Ins_p.P187fs|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mmz.1_Frame_Shift_Ins_p.P187fs|PPAN_uc002mnb.1_Frame_Shift_Ins_p.P134fs|SNORD105B_uc010dwz.1_5'Flank	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	187	Brix.				RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			CGACTACAACCCCGACTCCCAG	0.599													7	604	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	12671454	12671455	+	IGR	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:12671454_12671455insT								ZNF709 (9098 upstream) : ZNF490 (15465 downstream)																							gagtctcactctgtcacccagg	0.168													7	124	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	12754774	12754775	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:12754774_12754775insC								ZNF791 (14098 upstream) : MAN2B1 (2547 downstream)																							AAGGGAAAGAGAaattttttgt	0.386													13	213	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	39001386	39001387	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:39001386_39001387insT	uc002oit.2	+	60	9217_9218	c.9087_9088insT	c.(9085-9090)GGCCACfs	p.G3029fs	RYR1_uc002oiu.2_Frame_Shift_Ins_p.G3029fs|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3029_3030	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCAGCGGTGGCCACGCCTCTAA	0.564													12	266	---	---	---	---					
SPHK2	56848	broad.mit.edu	37	19	49132379	49132380	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:49132379_49132380delAG	uc002pjr.2	+	7	1680_1681	c.1314_1315delAG	c.(1312-1317)CCAGAAfs	p.P438fs	SPHK2_uc010xzt.1_Frame_Shift_Del_p.P379fs|SPHK2_uc002pjs.2_Frame_Shift_Del_p.P438fs|SPHK2_uc002pjt.2_Frame_Shift_Del_p.P232fs|SPHK2_uc002pju.2_Intron|SPHK2_uc002pjv.2_Frame_Shift_Del_p.P402fs|SPHK2_uc002pjw.2_Frame_Shift_Del_p.P500fs	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	438_439					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		ctggctcgccAGAACCCCTGCC	0.366													11	81	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	49526035	49526035	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:49526035delC								LHB (5688 upstream) : CGB (92 downstream)																							CCAGAGTTCTCATACTGTGAC	0.458													8	88	---	---	---	---					
SIGLEC16	400709	broad.mit.edu	37	19	50473433	50473434	+	RNA	INS	-	TTCT	TTCT	rs4009628		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:50473433_50473434insTTCT	uc002prf.2	+	2		c.452_453insTTCT			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						TGAACAATTTGTTCTAAAAGTA	0.550													10	200	---	---	---	---					
ACPT	93650	broad.mit.edu	37	19	51298096	51298097	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr19:51298096_51298097delCT	uc002pta.1	+	10	1040_1041	c.1040_1041delCT	c.(1039-1041)CCTfs	p.P347fs		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	347	Extracellular (Potential).					integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CTGCCCCTGCCTCTCAGCCTCC	0.673													11	928	---	---	---	---					
FAM98A	25940	broad.mit.edu	37	2	33810389	33810390	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:33810389_33810390insG	uc002rpa.1	-	8	1084_1085	c.1010_1011insC	c.(1009-1011)GGAfs	p.G337fs	FAM98A_uc010yne.1_Frame_Shift_Ins_p.G142fs|FAM98A_uc010ynd.1_Frame_Shift_Ins_p.G168fs|FAM98A_uc002roz.1_Frame_Shift_Ins_p.G175fs	NM_015475	NP_056290	Q8NCA5	FA98A_HUMAN	hypothetical protein LOC25940	338	Gly-rich.			G -> V (in Ref. 2; CAB43217).						ovary(1)	1	all_hematologic(175;0.115)					CTCTCCCTCCTCCTCGGCCTCC	0.594													8	275	---	---	---	---					
APLF	200558	broad.mit.edu	37	2	68765054	68765065	+	In_Frame_Del	DEL	TAATATTAAGAC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:68765054_68765065delTAATATTAAGAC	uc002sep.2	+	7	1028_1039	c.855_866delTAATATTAAGAC	c.(853-867)AATAATATTAAGACT>AAT	p.NIKT286del	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_In_Frame_Del_p.NIKT262del|APLF_uc002ser.1_In_Frame_Del_p.NIKT17del	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	286_289					double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						CAGAGATGAATAATATTAAGACTAATGCACAG	0.292													6	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	106986445	106986445	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:106986445delC								UXS1 (175650 upstream) : PLGLA (16324 downstream)																							gaggtcaggacgttcaagacc	0.045													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130751147	130751148	+	IGR	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr2:130751147_130751148insG								RAB6C (10836 upstream) : LOC440905 (32424 downstream)																							CCCTCGGCCCCCCATGCCCGGG	0.604													11	87	---	---	---	---					
PSMF1	9491	broad.mit.edu	37	20	1145035	1145035	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:1145035delG	uc002wel.3	+	7	847	c.679delG	c.(679-681)GGCfs	p.G227fs	PSMF1_uc010zpo.1_Frame_Shift_Del_p.G139fs|PSMF1_uc002wem.3_Frame_Shift_Del_p.G227fs|PSMF1_uc010zpp.1_Frame_Shift_Del_p.G165fs|PSMF1_uc002wen.3_Frame_Shift_Del_p.G227fs|PSMF1_uc002wep.3_Frame_Shift_Del_p.G178fs	NM_178578	NP_848693	Q92530	PSMF1_HUMAN	proteasome inhibitor subunit 1	227	Pro-rich.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome core complex	endopeptidase inhibitor activity|protein binding				0						CCCTTCCTCAGGCCTCCCGAA	0.582													7	233	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	23961127	23961130	+	IGR	DEL	TATG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:23961127_23961130delTATG								CST5 (100747 upstream) : GGTLC1 (4561 downstream)																							cacacacacatatgctcacacaca	0.211													9	72	---	---	---	---					
CEP250	11190	broad.mit.edu	37	20	34067239	34067257	+	Splice_Site	DEL	CAGGGGCTCAGGTAGGGCC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:34067239_34067257delCAGGGGCTCAGGTAGGGCC	uc002xcm.2	+	19	2959	c.2288_splice	c.e19+1	p.S763_splice	CEP250_uc010zve.1_Splice_Site_p.S131_splice	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2						centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			TGAACAACTACAGGGGCTCAGGTAGGGCCCAGACTCAGT	0.562													9	175	---	---	---	---					
RBM39	9584	broad.mit.edu	37	20	34319970	34319970	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr20:34319970delC	uc002xeb.2	-	4	533	c.189delG	c.(187-189)AGGfs	p.R63fs	RBM39_uc002xdz.2_Frame_Shift_Del_p.R39fs|RBM39_uc002xea.2_5'UTR|RBM39_uc010gfn.2_5'UTR|RBM39_uc010zvm.1_Frame_Shift_Del_p.R63fs|RBM39_uc002xeg.2_Frame_Shift_Del_p.R63fs|RBM39_uc002xec.2_Frame_Shift_Del_p.R63fs|RBM39_uc002xed.2_5'UTR|RBM39_uc002xee.2_5'UTR|RBM39_uc002xef.2_5'UTR|RBM39_uc010zvn.1_5'UTR	NM_184234	NP_909122	Q14498	RBM39_HUMAN	RNA binding motif protein 39 isoform a	63	Arg/Ser-rich (RS domain).				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	centrosome|nuclear speck	nucleotide binding|protein binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_epithelial(2;0.00295)|Lung NSC(9;0.00453)|Breast(12;0.00544)|all_lung(11;0.00676)					TGCTCTTTTTCCTTTCTCTGT	0.448													9	276	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	31411978	31411979	+	IGR	INS	-	A	A	rs139797347	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31411978_31411979insA								GRIK1 (99696 upstream) : CLDN17 (126284 downstream)																							GACACAGGAGGATGAAGGAAGG	0.391													5	1	---	---	---	---					
KRTAP19-2	337969	broad.mit.edu	37	21	31859698	31859700	+	5'Flank	DEL	ACC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:31859698_31859700delACC	uc011acy.1	-							NM_181608	NP_853639	Q3LHN2	KR192_HUMAN	keratin associated protein 19-2							intermediate filament					0						CATAGCCCAGACCTCCACAGTAG	0.542													7	263	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551313	42551313	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:42551313delC	uc002yyz.2	-	1	5854	c.243delG	c.(241-243)TGGfs	p.W81fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	81											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.159													22	122	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551471	42551472	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr21:42551471_42551472insC	uc002yyz.2	-	1	5695_5696	c.84_85insG	c.(82-87)CTGACAfs	p.L28fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	28_29											0		Prostate(19;2.29e-06)				AGTGAGGGTGTCAGGGTGAGTG	0.569													8	284	---	---	---	---					
SCN10A	6336	broad.mit.edu	37	3	38833543	38833546	+	Frame_Shift_Del	DEL	GTGG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:38833543_38833546delGTGG	uc003ciq.2	-	2	384_387	c.384_387delCCAC	c.(382-387)GTCCACfs	p.V128fs		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	128_129	Helical; Name=S1 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAGGATATGAGTGGACAGACACTT	0.485													7	142	---	---	---	---					
TMCC1	23023	broad.mit.edu	37	3	129370392	129370393	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:129370392_129370393insA	uc003emz.3	-	7	2394_2395	c.1893_1894insT	c.(1891-1896)ATTGCCfs	p.I631fs	TMCC1_uc003emy.3_Frame_Shift_Ins_p.I307fs|TMCC1_uc011blc.1_Frame_Shift_Ins_p.I452fs|TMCC1_uc010htg.2_Frame_Shift_Ins_p.I517fs	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	631_632	Helical; (Potential).					integral to membrane				skin(1)	1						CAGAGAAAGGCAATAAAAACCA	0.500													8	170	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	142895155	142895155	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:142895155delC								CHST2 (53345 upstream) : SLC9A9 (88910 downstream)																							GGCCTCAGGGCCCCCCCCCAG	0.746													4	4	---	---	---	---					
GMPS	8833	broad.mit.edu	37	3	155628590	155628591	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:155628590_155628591insG	uc003faq.2	+	6	971_972	c.636_637insG	c.(634-639)GGATGCfs	p.G212fs	GMPS_uc011bom.1_Frame_Shift_Ins_p.G113fs	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	212_213	Glutamine amidotransferase type-1.				glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATATAGCTGGATGCAGTGGAAC	0.381			T	MLL	AML								8	66	---	---	---	---					
FNDC3B	64778	broad.mit.edu	37	3	172061972	172061972	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:172061972delA	uc003fhy.2	+	19	2346	c.2174delA	c.(2173-2175)GAGfs	p.E725fs	FNDC3B_uc003fhz.3_Frame_Shift_Del_p.E725fs	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	725	Fibronectin type-III 5.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		CATGGCCCAGAGCTGGAGTGC	0.572													11	252	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	186478893	186478893	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr3:186478893delT								KNG1 (17152 upstream) : EIF4A2 (22468 downstream)																							gtagctgggatttacaggtgt	0.204													9	164	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388673	1388673	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:1388673delC	uc003gdf.2	+	1	3334	c.374delC	c.(373-375)GCCfs	p.A125fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	125					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			ATGCGGAGTGCCCGCCTGCTC	0.697													10	322	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389456	1389457	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:1389456_1389457delCA	uc003gdf.2	+	1	4117_4118	c.1157_1158delCA	c.(1156-1158)TCAfs	p.S386fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	386	10.|Interaction with PAK1.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCTGCCTGCTCACACACGTGCC	0.639													12	499	---	---	---	---					
WFS1	7466	broad.mit.edu	37	4	6302779	6302781	+	In_Frame_Del	DEL	CCC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:6302779_6302781delCCC	uc003giy.2	+	8	1423_1425	c.1257_1259delCCC	c.(1255-1260)TTCCCC>TTC	p.P420del	WFS1_uc003gix.2_In_Frame_Del_p.P420del|WFS1_uc003giz.2_In_Frame_Del_p.P238del	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	420	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		TCTTCTCCTTCCCCATCGCCAGC	0.596													7	338	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	69894184	69894184	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr4:69894184delT								UGT2A3 (76675 upstream) : UGT2B7 (68009 downstream)																							AGGGTAAAAATATATGATCTA	0.318													9	140	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	3276462	3276462	+	IGR	DEL	G	-	-	rs140838536	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:3276462delG								C5orf38 (520950 upstream) : IRX1 (319706 downstream)																							ggaggaaggagggaggggagg	0.000													13	64	---	---	---	---					
UGT3A2	167127	broad.mit.edu	37	5	36038005	36038006	+	Frame_Shift_Ins	INS	-	G	G	rs148808619		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:36038005_36038006insG	uc003jjz.1	-	6	1281_1282	c.1188_1189insC	c.(1186-1191)GAAAACfs	p.E396fs	UGT3A2_uc011cos.1_Frame_Shift_Ins_p.E362fs|UGT3A2_uc011cot.1_Frame_Shift_Ins_p.E94fs	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	396_397	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CGGACCATGTTTTCAGGCTGGT	0.480													8	142	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	53695958	53695958	+	IGR	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:53695958delA								ARL15 (89555 upstream) : HSPB3 (55487 downstream)																							cgtctctactaaaaaatacaa	0.080													10	41	---	---	---	---					
EGR1	1958	broad.mit.edu	37	5	137802681	137802682	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr5:137802681_137802682insT	uc003ldb.1	+	2	813_814	c.543_544insT	c.(541-546)TCCGCCfs	p.S181fs	EGR1_uc011cyu.1_Intron	NM_001964	NP_001955	P18146	EGR1_HUMAN	early growth response 1	181_182					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CGGCCTCCTCCGCCTCCGCCTC	0.653													7	459	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	1478502	1478503	+	IGR	INS	-	TGG	TGG			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:1478502_1478503insTGG								FOXF2 (82671 upstream) : FOXC1 (132178 downstream)																							gatggtggtgatggtggtggtg	0.000													8	40	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	23856770	23856771	+	IGR	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:23856770_23856771insG								None (None upstream) : NRSN1 (269643 downstream)																							cactccagcctggtgacagagc	0.178													39	302	---	---	---	---					
HIST1H2BM	8342	broad.mit.edu	37	6	27781951	27781952	+	5'Flank	INS	-	G	G			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:27781951_27781952insG	uc003njo.2	+							NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm						nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						ATTaagaaaaaaaaaaaaaaaa	0.243													3	6	---	---	---	---					
KIAA1949	170954	broad.mit.edu	37	6	30653003	30653003	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:30653003delA	uc003nra.2	-	2	1024	c.793delT	c.(793-795)TCAfs	p.S265fs	KIAA1949_uc003nrb.3_Frame_Shift_Del_p.S265fs	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	265						cytoplasm|cytoskeleton	actin binding				0						TCTTCTCCTGACCTCAGCCTC	0.522													28	839	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	63937666	63937667	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:63937666_63937667insC								KHDRBS2 (941566 upstream) : LGSN (48190 downstream)																							ttgctctgtcaccaggctggag	0.188													16	193	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160131788	160131788	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:160131788delT								SOD2 (17435 upstream) : WTAP (16341 downstream)																							ccaccactcatactgctctga	0.100													9	416	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132134	160132134	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:160132134delC								SOD2 (17781 upstream) : WTAP (15995 downstream)																							ataaccacctccataaccacc	0.070													10	453	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132360	160132360	+	IGR	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr6:160132360delC								SOD2 (18007 upstream) : WTAP (15769 downstream)																							ccaccactcacactgctctga	0.139													16	75	---	---	---	---					
LIMK1	3984	broad.mit.edu	37	7	73520418	73520419	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:73520418_73520419insT	uc003uaa.1	+	7	891_892	c.726_727insT	c.(724-729)CTGATTfs	p.L242fs	RFC2_uc011kfa.1_Intron|LIMK1_uc010lbl.1_RNA|LIMK1_uc003uab.2_Frame_Shift_Ins_p.L208fs|LIMK1_uc003uac.1_Frame_Shift_Ins_p.L34fs	NM_002314	NP_002305	P53667	LIMK1_HUMAN	LIM domain kinase 1	242_243	PDZ.				actin cytoskeleton organization|axon guidance|negative regulation of ubiquitin-protein ligase activity|positive regulation of actin filament bundle assembly|positive regulation of axon extension|Rho protein signal transduction	cytosol|growth cone|nucleus	ATP binding|heat shock protein binding|protein serine/threonine kinase activity|zinc ion binding			stomach(2)|ovary(1)	3		Lung NSC(55;0.137)				TTGACCTGCTGATTCAGGAAAC	0.644													7	340	---	---	---	---					
MAGI2	9863	broad.mit.edu	37	7	77762371	77762374	+	Frame_Shift_Del	DEL	TTGA	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:77762371_77762374delTTGA	uc003ugx.2	-	18	3289_3292	c.3035_3038delTCAA	c.(3034-3039)CTCAACfs	p.L1012fs	MAGI2_uc003ugy.2_Frame_Shift_Del_p.L998fs|MAGI2_uc010ldx.1_Frame_Shift_Del_p.L605fs	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1012_1013						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGTGGGGCTGTTGAGCTCTGCGAT	0.598													14	330	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100377302	100377302	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:100377302delG	uc003uwj.2	+	36	6717	c.6552delG	c.(6550-6552)CTGfs	p.L2184fs	ZAN_uc003uwk.2_Frame_Shift_Del_p.L2184fs|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2184	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCCAGGCTCTGCAAGCCTTCG	0.642													4	8	---	---	---	---					
MUC17	140453	broad.mit.edu	37	7	100684131	100684133	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:100684131_100684133delCTC	uc003uxp.1	+	3	9487_9489	c.9434_9436delCTC	c.(9433-9438)TCTCCT>TCT	p.P3146del	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3146	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCCATTCATCTCCTACAACTTC	0.493													21	690	---	---	---	---					
OR2A14	135941	broad.mit.edu	37	7	143826378	143826379	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr7:143826378_143826379delTG	uc011kua.1	+	1	173_174	c.173_174delTG	c.(172-174)ATGfs	p.M58fs		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CACACACCCATGTACTTCTTCC	0.480													9	359	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	26868281	26868282	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:26868281_26868282insC								ADRA1A (145359 upstream) : MIR548H-4 (38088 downstream)																							ttgctctgtcaccagtctggag	0.183													8	163	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	82605747	82605752	+	IGR	DEL	TATATA	-	-	rs71268017	by1000genomes	TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr8:82605747_82605752delTATATA								IMPA1 (7158 upstream) : SLC10A5 (141 downstream)																							tgtgtgtgtgtATATATATATATGTA	0.291													9	28	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	31644563	31644563	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:31644563delT								None (None upstream) : ACO1 (740038 downstream)																							ACAAGGAGAGTTTTTTTTTTT	0.373													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	66333705	66333710	+	IGR	DEL	GTGGAG	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chr9:66333705_66333710delGTGGAG								FAM74A4 (839319 upstream) : LOC442421 (162760 downstream)																							CTTCAGGGACGTGGAGGTGGAGGAGT	0.451													12	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	66	66	+	5'Flank	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrM:66delG	uc004cor.1	+						uc004cos.3_5'Flank					DQ582265																		ATTTTCGTCTGGGGGGTGTGC	0.506													14	2	---	---	---	---					
REPS2	9185	broad.mit.edu	37	X	17043215	17043215	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:17043215delG	uc004cxv.1	+	4	751	c.580delG	c.(580-582)GCCfs	p.A194fs	REPS2_uc004cxw.1_Frame_Shift_Del_p.A193fs|REPS2_uc011miw.1_Frame_Shift_Del_p.A53fs	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	194					epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					GTCACCCCTCGCCTCCCCTCC	0.572													7	317	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	26523757	26523757	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:26523757delT								MAGEB6 (309995 upstream) : VENTXP1 (52697 downstream)																							atgcctgtaattcccaacact	0.144													7	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	48300166	48300166	+	IGR	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:48300166delT								SSX4 (47381 upstream) : SLC38A5 (16762 downstream)																							CTCTTTCGTAttttttttttt	0.209													7	20	---	---	---	---					
XAGE5	170627	broad.mit.edu	37	X	52844141	52844141	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52844141delG	uc004drd.1	+	4	269	c.204delG	c.(202-204)CAGfs	p.Q68fs		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	68										ovary(1)	1						CTGATCTCCAGGAGCTGTCTC	0.448													13	276	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	52853416	52853417	+	IGR	INS	-	C	C			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:52853416_52853417insC								XAGE5 (6094 upstream) : XAGE3 (38143 downstream)																							CTGAGACAGCTCTGGAGATCAG	0.426													19	141	---	---	---	---					
IL13RA1	3597	broad.mit.edu	37	X	117875043	117875043	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:117875043delC	uc004eqs.2	+	2	195	c.152delC	c.(151-153)ACAfs	p.T51fs	IL13RA1_uc004eqr.1_Frame_Shift_Del_p.T51fs|IL13RA1_uc004eqt.1_Frame_Shift_Del_p.T51fs	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	51	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						GTAATATGGACATGGAATCCA	0.378													12	83	---	---	---	---					
CXorf66	347487	broad.mit.edu	37	X	139040296	139040296	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:139040296delT	uc004fbb.2	-	2	191	c.169delA	c.(169-171)ATGfs	p.M57fs		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	57	Helical; (Potential).					integral to membrane					0						ACAAAAACCATGATGATAATA	0.318													8	392	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140994985	140994987	+	In_Frame_Del	DEL	CCT	-	-	rs150321883		TCGA-DS-A1OC-01A-11D-A14W-08	TCGA-DS-A1OC-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	ba015a7f-c612-4309-b767-177fd5802e4f	72615905-823e-4ace-976e-82a198791120	g.chrX:140994985_140994987delCCT	uc004fbt.2	+	4	2081_2083	c.1795_1797delCCT	c.(1795-1797)CCTdel	p.P600del	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	600							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAGAGCCCTCCTCAGGGGG	0.581										HNSCC(15;0.026)			21	510	---	---	---	---					
