Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CASZ1	54897	broad.mit.edu	37	1	10699536	10699536	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:10699536C>T	uc001aro.2	-	21	5063	c.4743G>A	c.(4741-4743)ACG>ACA	p.T1581T		NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1581	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TGCCCACCACCGTGTGGCGGC	0.687000													6	6					0	0	0.006214	0	0
PLEKHM2	23207	broad.mit.edu	37	1	16044409	16044409	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:16044409C>T	uc010obo.1	+	4	526	c.299C>T	c.(298-300)GCC>GTC	p.A100V		NM_015164	NP_055979	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M	100	RUN.|Interaction with KIF5B.				Golgi organization	cytoplasm	kinesin binding			ovary(1)	1		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		CTGTACCTGGCCCTCAACGAG	0.562000													8	11					0	0	0.006214	0	0
EPB41	2035	broad.mit.edu	37	1	29314294	29314294	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:29314294G>A	uc001brm.1	+	1	352	c.345G>A	c.(343-345)GAG>GAA	p.E115E	EPB41_uc001brg.1_5'UTR|EPB41_uc001brh.1_5'UTR|EPB41_uc001bri.1_Silent_p.E115E|EPB41_uc001brj.1_5'UTR|EPB41_uc009vtk.1_Silent_p.E115E|EPB41_uc001brk.2_Silent_p.E115E|EPB41_uc001brl.1_Silent_p.E115E|EPB41_uc009vtl.1_5'UTR|EPB41_uc009vtm.1_5'UTR	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	115					blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		GTCAGAAAGAGATAGAATTTG	0.423000													90	165					0	0	0.003610	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579239	35579239	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:35579239G>A	uc001bym.2	+	11	1956	c.1808G>A	c.(1807-1809)CGA>CAA	p.R603Q	ZMYM1_uc001byn.2_Missense_Mutation_p.R603Q|ZMYM1_uc010ohu.1_Missense_Mutation_p.R584Q|ZMYM1_uc001byo.2_Missense_Mutation_p.R243Q|ZMYM1_uc009vut.2_Missense_Mutation_p.R528Q	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	603						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAAACATTTCGACTTATGAAT	0.318000													57	81					0	0	0.003610	0	0
GRIK3	2899	broad.mit.edu	37	1	37270815	37270815	+	Missense_Mutation	SNP	T	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:37270815T>A	uc001caz.2	-	15	2473	c.2338A>T	c.(2338-2340)ACC>TCC	p.T780S	GRIK3_uc001cba.1_Missense_Mutation_p.T780S	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	780	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	ATGGCGATGGTGATCTTGTCC	0.592000													24	59					0	0	0.002780	0	0
LOC200030	200030	broad.mit.edu	37	1	148346705	148346705	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:148346705G>A	uc001eqf.2	-	1	87	c.52C>T	c.(52-54)CTA>TTA	p.L18L	LOC200030_uc001eqe.2_5'UTR|LOC200030_uc001eqg.2_5'UTR|NBPF14_uc009wkf.1_RNA|uc001erd.3_Silent_p.L18L|uc001erc.3_RNA|uc010paj.1_5'UTR|uc010pav.1_Silent_p.L18L|uc010paw.1_5'UTR	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	18						cytoplasm					0						TTGATTTCTAGAATGTTCATC	0.512000													6	244					0	0	0.001984	0	0
NBPF15	284565	broad.mit.edu	37	1	148594456	148594456	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:148594456G>A	uc001esc.2	+	19	2318	c.1829G>A	c.(1828-1830)AGA>AAA	p.R610K		NM_173638	NP_775909	Q8N660	NBPFF_HUMAN	hypothetical protein LOC284565	610	NBPF 6.					cytoplasm					0	all_hematologic(923;0.032)					TCACTGGATAGATGTTATTCG	0.453000													222	400					0	0	0.003610	0	0
DDR2	4921	broad.mit.edu	37	1	162737062	162737062	+	Silent	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:162737062T>C	uc001gcf.2	+	12	1671	c.1206T>C	c.(1204-1206)ATT>ATC	p.I402I	DDR2_uc001gcg.2_Silent_p.I402I	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	402	Helical; (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			GGATCCTGATTGGCTGCTTGG	0.478000													15	240					0	0	0.004007	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204408075	204408075	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:204408075G>A	uc001haw.2	-	24	3983	c.3504C>T	c.(3502-3504)GAC>GAT	p.D1168D	PIK3C2B_uc010pqv.1_Silent_p.D1140D	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1168	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			TCTCATACTCGTCCTCCCCAG	0.597000													10	43					0	0	0.000978	0	0
DISP1	84976	broad.mit.edu	37	1	223176989	223176989	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:223176989C>T	uc001hnu.1	+	8	2397	c.2250C>T	c.(2248-2250)TCC>TCT	p.S750S		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	750					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TGGAGTTATCCGAGTTCCAGG	0.463000													70	123					0	0	0.003610	0	0
PSEN2	5664	broad.mit.edu	37	1	227076555	227076555	+	Missense_Mutation	SNP	G	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:227076555G>T	uc009xeo.1	+	8	1019	c.592G>T	c.(592-594)GCC>TCC	p.A198S	PSEN2_uc009xep.1_Missense_Mutation_p.A198S|PSEN2_uc001hqk.2_RNA	NM_000447	NP_000438	P49810	PSN2_HUMAN	presenilin 2 isoform 1	198	Lumenal (Potential).				amyloid precursor protein catabolic process|anti-apoptosis|apoptosis|beta-amyloid metabolic process|calcium ion transport|induction of apoptosis by extracellular signals|intracellular signal transduction|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity	apical plasma membrane|axon|cell cortex|cell surface|centrosome|ciliary rootlet|dendritic shaft|endoplasmic reticulum membrane|Golgi membrane|growth cone|integral to plasma membrane|kinetochore|lysosomal membrane|membrane raft|mitochondrial inner membrane|neuromuscular junction|neuronal cell body|nuclear inner membrane|perinuclear region of cytoplasm|Z disc	aspartic-type endopeptidase activity|protein binding			lung(2)	2		Prostate(94;0.0771)				CTACAATGTGGCCATGGACTA	0.577000													12	97					1.61879e-10	2.01311e-10	0.001368	1	0
SEC61A2	55176	broad.mit.edu	37	10	12198972	12198972	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr10:12198972G>A	uc001ile.2	+	8	830	c.683G>A	c.(682-684)CGA>CAA	p.R228Q	SEC61A2_uc010qbq.1_Missense_Mutation_p.R206Q|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.R228Q	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	228	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				GACAAAGTCCGAGCTTTACGG	0.443000													60	33					0	0	0.003610	0	0
ZNF33A	7581	broad.mit.edu	37	10	38343652	38343652	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr10:38343652G>A	uc001izh.2	+	5	775	c.597G>A	c.(595-597)CTG>CTA	p.L199L	ZNF33A_uc001izg.2_Silent_p.L200L|ZNF33A_uc010qev.1_Silent_p.L206L|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	199						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GGAACACACTGAGTCATCATG	0.348000													31	16					0	0	0.008361	0	0
ZNF33A	7581	broad.mit.edu	37	10	38343662	38343662	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr10:38343662G>A	uc001izh.2	+	5	785	c.607G>A	c.(607-609)GAG>AAG	p.E203K	ZNF33A_uc001izg.2_Missense_Mutation_p.E204K|ZNF33A_uc010qev.1_Missense_Mutation_p.E210K|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	203						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GAGTCATCATGAGGAGACTTT	0.348000													33	15					0	0	0.002096	0	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294000													3	34					0	0	0.000248	0	0
RRP12	23223	broad.mit.edu	37	10	99126355	99126355	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr10:99126355G>A	uc001knf.2	-	28	3378	c.3239C>T	c.(3238-3240)TCA>TTA	p.S1080L	RRP12_uc001kne.2_Missense_Mutation_p.S95L|RRP12_uc009xvl.2_Missense_Mutation_p.S197L|RRP12_uc009xvm.2_Missense_Mutation_p.S798L|RRP12_uc010qou.1_Missense_Mutation_p.S1019L|RRP12_uc009xvn.2_Missense_Mutation_p.S980L	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1080	Glu-rich.					integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		CTCGTCCTCTGAGTCAGCTAA	0.602000													6	103					0	0	0.001984	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7647010	7647010	+	Silent	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr11:7647010T>C	uc001mfj.3	+	8	1102	c.714T>C	c.(712-714)GCT>GCC	p.A238A	PPFIBP2_uc010rbb.1_Silent_p.A161A|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Silent_p.A161A|PPFIBP2_uc010rbd.1_Silent_p.A80A|PPFIBP2_uc010rbe.1_Silent_p.A126A|PPFIBP2_uc001mfl.3_Silent_p.A95A	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	238	Potential.				cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		TCTTCCAGGCTGAAGTCGCCC	0.572000													3	49					0	0	0.004672	0	0
LRRN4CL	221091	broad.mit.edu	37	11	62455621	62455621	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr11:62455621G>A	uc001nun.2	-	2	667	c.360C>T	c.(358-360)GAC>GAT	p.D120D		NM_203422	NP_981967	Q8ND94	LRN4L_HUMAN	LRRN4 C-terminal like precursor	120	Fibronectin type-III.|Extracellular (Potential).					integral to membrane					0						CCTCGCTGCCGTCCCAAAGCA	0.657000													5	5					0	0	0.001168	0	0
GALNT8	26290	broad.mit.edu	37	12	4870147	4870147	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr12:4870147C>T	uc001qne.1	+	7	1289	c.1197C>T	c.(1195-1197)GTC>GTT	p.V399V		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	399	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GAGGGAAGGTCGAGATTTTGC	0.522000													44	47					0	0	0.003610	0	0
WDR76	79968	broad.mit.edu	37	15	44127315	44127315	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr15:44127315C>T	uc001zti.1	+	3	542	c.519C>T	c.(517-519)AAC>AAT	p.N173N		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	173											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		TATCAGAAAACGCAGACTTTT	0.294000													5	157					0	0	0.001168	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1810463	1810463	+	Silent	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:1810463T>C	uc002cmk.2	+	12	1504	c.1384T>C	c.(1384-1386)TTG>CTG	p.L462L	MAPK8IP3_uc002cml.2_Silent_p.L456L|MAPK8IP3_uc010uvl.1_Silent_p.L463L	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	462	Potential.				vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						GAGGGGCGAGTTGGAGGCTGC	0.532000													40	15					0	0	0.003610	0	0
SMG1	23049	broad.mit.edu	37	16	18853011	18853011	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:18853011C>T	uc002dfm.2	-	41	6935	c.6572G>A	c.(6571-6573)CGA>CAA	p.R2191Q	SMG1_uc010bwb.2_Missense_Mutation_p.R2051Q|SMG1_uc010bwa.2_Missense_Mutation_p.R922Q|SMG1_uc002dfo.3_Missense_Mutation_p.R489Q	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2191	PI3K/PI4K.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AGAATAGTGTCGAGCATGGAA	0.433000													15	334					0	0	0.003163	0	0
NCRNA00169	400508	broad.mit.edu	37	16	21328281	21328281	+	RNA	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:21328281C>T	uc010bwr.1	+	3		c.673C>T				NR_026675				Homo sapiens cDNA FLJ41766 fis, clone IMR322006222.											central_nervous_system(1)	1						TAAATAAGAACGGACCTTTCG	0.438000													177	248					0	0	0.003610	0	0
CDH8	1006	broad.mit.edu	37	16	61687700	61687700	+	Missense_Mutation	SNP	C	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:61687700C>G	uc002eog.1	-	12	2464	c.2212G>C	c.(2212-2214)GCC>CCC	p.A738P		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	738	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TATGGCGGGGCCGTGGGATCA	0.507000													5	39					0	0	0.002450	0	0
AARS	16	broad.mit.edu	37	16	70303578	70303578	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:70303578G>A	uc002eyn.1	-	7	1015	c.905C>T	c.(904-906)GCT>GTT	p.A302V	AARS_uc010vlu.1_Missense_Mutation_p.A132V	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	302					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	GATGGTCCGAGCGTGGTCAGC	0.597000													90	162					0	0	0.003610	0	0
PMFBP1	83449	broad.mit.edu	37	16	72158703	72158703	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:72158703G>A	uc002fcc.3	-	17	2739	c.2567C>T	c.(2566-2568)GCC>GTC	p.A856V	PMFBP1_uc002fcd.2_Missense_Mutation_p.A851V|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.A706V|PMFBP1_uc010cgo.1_Missense_Mutation_p.A147V	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	856	Potential.									ovary(2)	2		Ovarian(137;0.179)				TTTTAAGGCGGCCATCTCCTC	0.572000											OREG0023927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	207					0	0	0.000248	0	0
TMEM132E	124842	broad.mit.edu	37	17	32956104	32956104	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:32956104C>T	uc002hif.2	+	5	1277	c.949C>T	c.(949-951)CGG>TGG	p.R317W		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	317	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GTCAGTCAAGCGGAGGATCAT	0.612000													23	42					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	17	39296674	39296674	+	RNA	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:39296674G>A	uc010cxk.1	-	1		c.30C>T								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		AGCAGCTGGGGCGGCAGCAGG	0.632000													4	61					0	0	0.000602	0	0
KRT36	8689	broad.mit.edu	37	17	39643888	39643888	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:39643888G>A	uc002hwt.2	-	4	801	c.801C>T	c.(799-801)TGC>TGT	p.C267C		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	267	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CCTCGTACTGGCATCTCATAT	0.597000													4	161					0	0	0.000248	0	0
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:14513675T>C	uc010dln.2	-	10	1973	c.1519A>G	c.(1519-1521)AAA>GAA	p.K507E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	507	Potential.									skin(3)	3						GAATTCATTTTCTTTTCAGCC	0.284000													3	126					0	0	0.004672	0	0
C18orf10	25941	broad.mit.edu	37	18	34376837	34376837	+	Silent	SNP	T	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:34376837T>G	uc002kzw.1	-	7	1262	c.834A>C	c.(832-834)GGA>GGC	p.G278G	C18orf10_uc002kzv.1_Intron|C18orf10_uc010xci.1_Silent_p.G243G|C18orf10_uc002kzx.1_Silent_p.G235G	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	278						cytoplasm|microtubule				skin(1)	1						GACCGGAGGGTCCTGAGGGCC	0.562000													10	105					0	0	0.002445	0	0
WDR7	23335	broad.mit.edu	37	18	54605881	54605881	+	Missense_Mutation	SNP	A	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:54605881A>G	uc002lgk.1	+	24	4160	c.3949A>G	c.(3949-3951)ATG>GTG	p.M1317V	WDR7_uc002lgl.1_Missense_Mutation_p.M1284V	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1317										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TATTGAAAAGATGCCCACAGA	0.353000													37	59					0	0	0.008740	0	0
CDH20	28316	broad.mit.edu	37	18	59166539	59166539	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:59166539G>A	uc010dps.1	+	2	379	c.367G>A	c.(367-369)GAC>AAC	p.D123N	CDH20_uc002lif.2_Missense_Mutation_p.D117N	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	123	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TCAGAGGCTCGACCGAGAGGA	0.547000													23	19					0	0	0.002299	0	0
DSEL	92126	broad.mit.edu	37	18	65181691	65181691	+	Missense_Mutation	SNP	G	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:65181691G>T	uc002lke.1	-	2	1409	c.185C>A	c.(184-186)CCC>CAC	p.P62H		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	52						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CTTTTGGTTGGGTCTGAAATC	0.373000													58	108					3.53049e-34	4.50602e-34	0.003610	1	0
MBD3L1	85509	broad.mit.edu	37	19	8953854	8953854	+	Missense_Mutation	SNP	G	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr19:8953854G>C	uc002mko.2	+	1	586	c.500G>C	c.(499-501)AGA>ACA	p.R167T		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GTCAGAGAGAGACTCGCAATA	0.478000													9	24					0	0	0.008291	0	0
ZNF493	284443	broad.mit.edu	37	19	21607379	21607379	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr19:21607379C>T	uc002npx.2	+	2	1814	c.1534C>T	c.(1534-1536)CGG>TGG	p.R512W	ZNF493_uc002npw.2_Missense_Mutation_p.R640W|ZNF493_uc002npy.2_Missense_Mutation_p.R512W	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	512	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGCTTTTAAGCGGTCCTCACA	0.388000													27	42					0	0	0.006320	0	0
CLIP3	25999	broad.mit.edu	37	19	36517911	36517911	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr19:36517911C>T	uc010eeq.1	-	3	625	c.343G>A	c.(343-345)GGG>AGG	p.G115R	uc002ocy.2_Intron|CLIP3_uc002ocz.1_Missense_Mutation_p.G115R	NM_015526	NP_056341	Q96DZ5	CLIP3_HUMAN	CAP-GLY domain containing linker protein 3	115					chaperone-mediated protein transport|fat cell differentiation|membrane biogenesis|negative regulation of microtubule polymerization|peptidyl-L-cysteine S-palmitoylation|positive regulation of apoptosis|positive regulation of endocytosis|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose transport|positive regulation of protein phosphorylation	early endosome membrane|Golgi stack|membrane raft|microsome|plasma membrane|recycling endosome membrane|trans-Golgi network membrane	ganglioside binding|microtubule binding			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TCGGTCAGCCCGTCACGATCG	0.632000													19	39					0	0	0.001523	0	0
TRIM54	57159	broad.mit.edu	37	2	27505742	27505742	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:27505742G>A	uc002rjo.2	+	1	143	c.143G>A	c.(142-144)CGC>CAC	p.R48H	TRIM54_uc002rjn.2_Missense_Mutation_p.R48H	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	48	RING-type.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AACCTGTGCCGCAAATGTGCC	0.587000													5	234					0	0	0.000602	0	0
PSD4	23550	broad.mit.edu	37	2	113955395	113955395	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:113955395C>T	uc002tjc.2	+	14	2712	c.2529C>T	c.(2527-2529)CAC>CAT	p.H843H	PSD4_uc002tjd.2_Silent_p.H463H|PSD4_uc002tje.2_Silent_p.H813H|PSD4_uc002tjf.2_Silent_p.H464H|PSD4_uc002tjg.2_Silent_p.H9H|PSD4_uc010yxs.1_Silent_p.H73H|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	843	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TGGGGGTGCACCACTCGCTGG	0.642000													8	22					0	0	0.006214	0	0
POTEF	728378	broad.mit.edu	37	2	130877709	130877709	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:130877709G>A	uc010fmh.2	-	3	780	c.380C>T	c.(379-381)GCC>GTC	p.A127V		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	127						cell cortex	ATP binding			skin(3)|ovary(2)	5						CTCCATGAAGGCACTGTCATC	0.587000													45	65					0	0	0.003610	0	0
POTEE	445582	broad.mit.edu	37	2	131976355	131976355	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:131976355C>T	uc002tsn.2	+	1	432	c.380C>T	c.(379-381)GCC>GTC	p.A127V	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	127							ATP binding				0						GATGACAGCGCCTTCATGGAG	0.597000													8	135					0	0	0.004990	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208865987	208865987	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:208865987C>T	uc002vcl.2	-	2	867	c.377G>A	c.(376-378)CGG>CAG	p.R126Q	PLEKHM3_uc002vcm.2_Missense_Mutation_p.R126Q	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	126					intracellular signal transduction		metal ion binding			ovary(1)	1						CCGGTCCCTCCGACGCTGACA	0.468000													43	93					0	0	0.003610	0	0
C20orf12	55184	broad.mit.edu	37	20	18395005	18395005	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr20:18395005C>T	uc010zsa.1	-	12	1495	c.1286G>A	c.(1285-1287)CGC>CAC	p.R429H	C20orf12_uc010zrz.1_5'Flank|C20orf12_uc002wqp.3_Missense_Mutation_p.R120H|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.R296H|C20orf12_uc002wqq.3_Missense_Mutation_p.R410H|C20orf12_uc002wqu.1_RNA|C20orf12_uc010gct.1_RNA	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	237						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				AGAAAAAGGGCGAGGTTCCTC	0.537000													20	34					0	0	0.001523	0	0
KCNG1	3755	broad.mit.edu	37	20	49626346	49626346	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr20:49626346G>A	uc002xwa.3	-	2	825	c.530C>T	c.(529-531)GCG>GTG	p.A177V	KCNG1_uc002xwb.2_Missense_Mutation_p.A177V	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	177	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CACCATCTCCGCGAACTCCTC	0.701000													29	31					0	0	0.001786	0	0
SLC25A1	6576	broad.mit.edu	37	22	19165323	19165323	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr22:19165323C>T	uc002zoz.2	-	4	473	c.358G>A	c.(358-360)GAC>AAC	p.D120N	SLC25A1_uc002zoy.2_Missense_Mutation_p.D17N|SLC25A1_uc002zpa.2_Missense_Mutation_p.D68N	NM_005984	NP_005975	P53007	TXTP_HUMAN	solute carrier family 25 (mitochondrial carrier;	120					gluconeogenesis|long-chain fatty-acyl-CoA biosynthetic process|mitochondrial citrate transport|triglyceride biosynthetic process	integral to membrane|mitochondrial inner membrane	citrate transmembrane transporter activity|protein binding				0	Colorectal(54;0.0993)	all_lung(157;9.94e-09)		Lung(27;0.124)		CGCGTGCTGTCCAGCCGTCCC	0.701000													9	12					0	0	0.002450	0	0
EP300	2033	broad.mit.edu	37	22	41565529	41565529	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr22:41565529G>A	uc003azl.3	+	26	4590	c.4195G>A	c.(4195-4197)GAT>AAT	p.D1399N		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1399				D->Y: Does not interact with TFAP2A and inhibits transcriptional coactivation of TFAP2A by CITED2. Does not inhibit interaction with CITED2, DNA-binding of TFAP2A or nuclear localization of TFAP2A or CITED2.	apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.D1399Y(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ATCTTACCTCGATAGTGTTCA	0.338000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				169	38					0	0	0.003610	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987890	50987890	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr22:50987890C>T	uc003bmi.2	+	1	1429	c.1295C>T	c.(1294-1296)GCG>GTG	p.A432V		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	432	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ACCCCACGCGCGCCACTCCCC	0.672000													81	15					0	0	0.003610	0	0
ARIH2	10425	broad.mit.edu	37	3	49004687	49004687	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr3:49004687G>A	uc003cvb.2	+	6	829	c.517G>A	c.(517-519)GTC>ATC	p.V173I	ARIH2_uc003cvc.2_Missense_Mutation_p.V173I|ARIH2_uc003cvf.2_Missense_Mutation_p.V91I|ARIH2_uc010hkl.2_Missense_Mutation_p.V173I	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	173	RING-type 1; atypical.				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		CTCAGTTCTCGTCAAGGACGG	0.493000													7	96					0	0	0.001984	0	0
KALRN	8997	broad.mit.edu	37	3	124209703	124209703	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr3:124209703C>T	uc003ehg.2	+	30	4680	c.4553C>T	c.(4552-4554)ACG>ATG	p.T1518M	KALRN_uc010hrv.1_Missense_Mutation_p.T1509M|KALRN_uc003ehf.1_Missense_Mutation_p.T1518M|KALRN_uc011bjy.1_Missense_Mutation_p.T1509M	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1518	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						TCAGGACACACGAAATATGTT	0.512000													60	49					0	0	0.003610	0	0
MCM2	4171	broad.mit.edu	37	3	127340510	127340510	+	Missense_Mutation	SNP	G	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr3:127340510G>C	uc003ejp.2	+	16	2666	c.2609G>C	c.(2608-2610)CGT>CCT	p.R870P	MCM2_uc011bkm.1_Missense_Mutation_p.R740P|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.R823P	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	870					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						TTGCAGGCTCGTCAGATCAAC	0.502000													6	41					0	0	0.003163	0	0
GPR160	26996	broad.mit.edu	37	3	169802324	169802324	+	Silent	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr3:169802324C>T	uc003fgi.2	+	4	1154	c.564C>T	c.(562-564)TTC>TTT	p.F188F	GPR160_uc010hwq.2_Silent_p.F188F	NM_014373	NP_055188	Q9UJ42	GP160_HUMAN	G protein-coupled receptor 160	188	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_cancers(22;3.26e-22)|all_epithelial(15;5.71e-27)|all_lung(20;8.41e-17)|Lung NSC(18;3.49e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			TGTCATTTTTCATGGTGATGA	0.403000													7	128					0	0	0.004007	0	0
ALPK1	80216	broad.mit.edu	37	4	113353125	113353125	+	Missense_Mutation	SNP	A	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr4:113353125A>C	uc003iap.3	+	11	2701	c.2422A>C	c.(2422-2424)AAT>CAT	p.N808H	ALPK1_uc003ian.3_Missense_Mutation_p.N808H|ALPK1_uc011cfx.1_Missense_Mutation_p.N730H|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.N636H	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	808							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		GGTCCTGCACAATTCTCTGGG	0.498000													14	10					0	0	0.001855	0	0
GAB1	2549	broad.mit.edu	37	4	144359596	144359596	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr4:144359596G>A	uc003ije.2	+	4	1397	c.1038G>A	c.(1036-1038)CCG>CCA	p.P346P	GAB1_uc003ijd.2_Silent_p.P346P|GAB1_uc011chq.1_Silent_p.P243P	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	346					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					CTCGGCCACCGAAACCACATC	0.493000													38	15					0	0	0.004289	0	0
LNPEP	4012	broad.mit.edu	37	5	96322254	96322254	+	Silent	SNP	C	T	T	rs142457895		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr5:96322254C>T	uc003kmv.1	+	4	1525	c.1011C>T	c.(1009-1011)GTC>GTT	p.V337V	LNPEP_uc003kmw.1_Silent_p.V323V	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	337	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		AGTCATCAGTCGTTCTAGATG	0.383000													77	58					0	0	0.003610	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905075	32905075	+	Missense_Mutation	SNP	C	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:32905075C>A	uc003ocl.1	-	3	729	c.496G>T	c.(496-498)GCC>TCC	p.A166S	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Missense_Mutation_p.A35S|HLA-DMB_uc010jue.1_Missense_Mutation_p.A35S|HLA-DMB_uc010juf.1_Missense_Mutation_p.A35S|HLA-DMB_uc011dql.1_Missense_Mutation_p.A166S	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	166	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						TTGGGCTGGGCAGTCTTGTGC	0.562000													53	106					3.68337e-26	4.64009e-26	0.003610	1	0
COL11A2	1302	broad.mit.edu	37	6	33148097	33148097	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:33148097G>A	uc003ocx.1	-	12	1525	c.1297C>T	c.(1297-1299)CGA>TGA	p.R433*	COL11A2_uc010jul.1_5'Flank|COL11A2_uc003ocy.1_Nonsense_Mutation_p.R347*|COL11A2_uc003ocz.1_Nonsense_Mutation_p.R326*	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	433	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						AGCCCTGCTCGGCCAGGGGGG	0.527000													39	69					0	0	0.006999	0	0
MDN1	23195	broad.mit.edu	37	6	90405382	90405382	+	Missense_Mutation	SNP	T	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:90405382T>G	uc003pnn.1	-	61	9829	c.9713A>C	c.(9712-9714)CAG>CCG	p.Q3238P		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3238					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AAAGCGTGCCTGGGGAAGCCA	0.587000													7	76					0	0	0.001855	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130399706	130399706	+	Silent	SNP	T	C	C			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:130399706T>C	uc003qbt.2	+	14	1418	c.1248T>C	c.(1246-1248)TGT>TGC	p.C416C	L3MBTL3_uc003qbu.2_Silent_p.C391C	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	416	MBT 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		CTTTCAGGTGTGAAGCATCAA	0.338000													38	88					0	0	0.007835	0	0
SYNE1	23345	broad.mit.edu	37	6	152647696	152647696	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:152647696C>A	uc010kiw.2	-	79	15630	c.15028G>T	c.(15028-15030)GAG>TAG	p.E5010*	SYNE1_uc003qot.3_Nonsense_Mutation_p.E4939*|SYNE1_uc003qou.3_Nonsense_Mutation_p.E5010*|SYNE1_uc010kiz.2_Nonsense_Mutation_p.E765*	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5010	Spectrin 15.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGGCATCCTCAAGCCAGTCA	0.433000										HNSCC(10;0.0054)			4	52					4.96729e-08	6.09908e-08	0.008871	1	0
MGC87042	256227	broad.mit.edu	37	7	22532260	22532260	+	Missense_Mutation	SNP	A	G	G	rs62447564	by1000genomes	TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr7:22532260A>G	uc003svh.2	-	4	726	c.629T>C	c.(628-630)ATA>ACA	p.I210T	MGC87042_uc010kum.1_Missense_Mutation_p.I229T			Q6NZ63	STEAL_HUMAN	SubName: Full=cDNA FLJ60218, highly similar to Six transmembrane epithelial antigen ofprostate 1;	210	Helical; (Potential).					integral to membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0						CAGAGCCAGTATTGCCAGTCC	0.393000													3	134					0	0	0.004672	0	0
PTPN12	5782	broad.mit.edu	37	7	77267950	77267950	+	Missense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr7:77267950C>T	uc003ugh.2	+	17	2274	c.2183C>T	c.(2182-2184)GCG>GTG	p.A728V	PTPN12_uc011kgp.1_Missense_Mutation_p.A609V|PTPN12_uc011kgq.1_Missense_Mutation_p.A598V|PTPN12_uc010lds.2_Missense_Mutation_p.A460V	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	728						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						GATCATCCAGCGGGAGGTATT	0.358000													95	40					0	0	0.003610	0	0
ZNF395	55893	broad.mit.edu	37	8	28218546	28218546	+	Silent	SNP	T	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr8:28218546T>G	uc003xgq.2	-	2	184	c.96A>C	c.(94-96)CCA>CCC	p.P32P	ZNF395_uc003xgt.2_Silent_p.P32P|ZNF395_uc003xgr.2_Silent_p.P32P|ZNF395_uc003xgs.2_Silent_p.P32P	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	32					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GCTCCGAGGGTGGGGCAGCCG	0.677000													6	22					0	0	0.004482	0	0
BAI1	575	broad.mit.edu	37	8	143614774	143614774	+	Missense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr8:143614774G>A	uc003ywm.2	+	24	3700	c.3517G>A	c.(3517-3519)GAC>AAC	p.D1173N		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1173	Helical; Name=7; (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CGCTGTCTTCGACTCGCTGGA	0.672000													12	10					0	0	0.001855	0	0
RGP1	9827	broad.mit.edu	37	9	35752745	35752745	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr9:35752745G>A	uc011lpf.1	+	9	1191	c.1050G>A	c.(1048-1050)TGG>TGA	p.W350*	GBA2_uc011lpd.1_5'Flank|RGP1_uc011lpe.1_Nonsense_Mutation_p.W390*	NM_001080496	NP_001073965	Q92546	RGP1_HUMAN	RGP1 retrograde golgi transport homolog	350										ovary(1)	1	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CTACCACCTGGACAGGACCTG	0.557000													17	25					0	0	0.004990	0	0
RECK	8434	broad.mit.edu	37	9	36117064	36117064	+	Missense_Mutation	SNP	G	A	A	rs142114378		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr9:36117064G>A	uc003zyv.2	+	17	2229	c.2143G>A	c.(2143-2145)GCG>ACG	p.A715T	RECK_uc003zyw.2_Missense_Mutation_p.A587T|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	715	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			AAGACAGCTCGCGTGTGACCA	0.458000													47	55					0	0	0.003610	0	0
C9orf9	11092	broad.mit.edu	37	9	135759455	135759455	+	Missense_Mutation	SNP	C	T	T	rs141999397	byFrequency	TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr9:135759455C>T	uc004cbx.1	+	2	232	c.121C>T	c.(121-123)CGG>TGG	p.R41W	C9orf9_uc004cby.1_Missense_Mutation_p.R41W|C9orf9_uc004cbz.1_Missense_Mutation_p.R41W	NM_018956	NP_061829	Q96E40	CI009_HUMAN	Rsb-66 protein	41								p.?(1)			0				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|GBM - Glioblastoma multiforme(294;4.84e-07)|Epithelial(140;1.28e-06)		CGACAAGATCCGGCCCATCTC	0.512000													34	38					0	0	0.003755	0	0
PHF6	84295	broad.mit.edu	37	X	133549136	133549136	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chrX:133549136C>T	uc004exj.2	+	8	1022	c.820C>T	c.(820-822)CGA>TGA	p.R274*	PHF6_uc004exk.2_Nonsense_Mutation_p.R274*|PHF6_uc011mvk.1_Nonsense_Mutation_p.R240*|PHF6_uc004exh.2_Nonsense_Mutation_p.R275*|PHF6_uc010nrr.2_Nonsense_Mutation_p.R274*|PHF6_uc004exi.2_Nonsense_Mutation_p.R275*	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	274					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGAGATTAAACGAGGAAAAAG	0.343000													19	164					0	0	0.006122	0	0
PASD1	139135	broad.mit.edu	37	X	150841059	150841059	+	Silent	SNP	G	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chrX:150841059G>A	uc004fev.3	+	14	2174	c.1842G>A	c.(1840-1842)CAG>CAA	p.Q614Q		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	614						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTGTCCAGAGAGCAGCTG	0.488000													49	99					0	0	0.003610	0	0
PLXNA3	55558	broad.mit.edu	37	X	153693147	153693147	+	Missense_Mutation	SNP	G	A	A	rs149034613		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chrX:153693147G>A	uc004flm.2	+	10	2152	c.1979G>A	c.(1978-1980)CGC>CAC	p.R660H		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	660	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGTAAGTACCGCCACACGTGT	0.652000													3	10					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	1	53174727	53174728	+	IGR	INS	-	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:53174727_53174728insA								C1orf163 (10689 upstream) : ZYG11B (17403 downstream)																							ccctgtctcagaaaaaaaaaaa	0.233													2	4	---	---	---	---					
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				8	17	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	88542298	88542299	+	IGR	INS	-	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr13:88542298_88542299insT								SLITRK5 (210430 upstream) : None (None downstream)																							TACTCACCTCATTTTTTTTTTA	0.267													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	90149586	90149589	+	IGR	DEL	AGGA	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr13:90149586_90149589delAGGA								None (None upstream) : MIR622 (733847 downstream)																							TAAAACAAACaggaaggaaggaag	0.020													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	43769942	43769943	+	IGR	INS	-	T	T			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr14:43769942_43769943insT								None (None upstream) : None (None downstream)																							TTGTGGGTTGATTTTTTTTTCT	0.332													3	6	---	---	---	---					
C15orf56	644809	broad.mit.edu	37	15	40544602	40544602	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr15:40544602delG	uc001zla.1	-	2	391	c.370delC	c.(370-372)CAGfs	p.Q124fs	PAK6_uc010bbl.2_Intron|PAK6_uc010bbm.2_Intron|PAK6_uc001zky.3_Intron|PAK6_uc010bbn.2_Intron|PAK6_uc001zlb.2_5'Flank	NM_001039905	NP_001034994	Q8N910	CO056_HUMAN	hypothetical protein LOC644809	124											0		all_cancers(109;1.62e-14)|all_epithelial(112;7.09e-12)|Lung NSC(122;3.4e-09)|all_lung(180;6.88e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.28e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0503)		GGCGGGAACTGGGGCCAAGCA	0.736													2	4	---	---	---	---					
GTF3C1	2975	broad.mit.edu	37	16	27549577	27549579	+	In_Frame_Del	DEL	AGG	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:27549577_27549579delAGG	uc002dov.1	-	3	570_572	c.530_532delCCT	c.(529-534)TCCTAC>TAC	p.S177del	GTF3C1_uc002dou.2_In_Frame_Del_p.S177del	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	177						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						AGGATGCAGTAGGAGAAGTCGGG	0.596													15	151	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	55817734	55817735	+	IGR	INS	-	G	G			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr16:55817734_55817735insG								CES4 (8910 upstream) : CES1 (19031 downstream)																							CTTCCCTCTCCGAGCCACACTC	0.564													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22066949	22066949	+	IGR	DEL	T	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:22066949delT								FLJ36000 (153879 upstream) : None (None downstream)																							CCAGAAAAAATATGTGAGAGA	0.323													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	35210426	35210429	+	IGR	DEL	AAGG	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:35210426_35210429delAAGG								MRM1 (245020 upstream) : LHX1 (84070 downstream)																							agaaagaaaaaaggaaggaaggaa	0.191													6	7	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:45219612delA	uc002ild.3	-	11	1488	c.1361delT	c.(1360-1362)CTAfs	p.L454fs	CDC27_uc002ile.3_Frame_Shift_Del_p.L460fs|CDC27_uc002ilf.3_Frame_Shift_Del_p.L454fs|CDC27_uc010wkp.1_Frame_Shift_Del_p.L393fs|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGCTTTTTGTAGATTAAAGGC	0.308													8	90	---	---	---	---					
CHAD	1101	broad.mit.edu	37	17	48545702	48545704	+	In_Frame_Del	DEL	TTG	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:48545702_48545704delTTG	uc010dbr.2	-	1	524_526	c.471_473delCAA	c.(469-474)AACAAG>AAG	p.N157del	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_In_Frame_Del_p.N157del|ACSF2_uc010dbt.1_5'UTR	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	157	LRR 4.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CTCACGGATCTTGTTGTTGTTGA	0.626													30	89	---	---	---	---					
CSH2	1443	broad.mit.edu	37	17	61952951	61952952	+	5'Flank	DEL	TC	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr17:61952951_61952952delTC	uc002jch.2	-						CSH2_uc002jcg.2_5'Flank|CSH2_uc002jci.2_5'Flank|GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron	NM_020991	NP_066271	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 2 isoform 1						female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding				0						tttctttctttctttctttctt	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	45293738	45293739	+	IGR	INS	-	A	A	rs2852944		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:45293738_45293739insA								IER3IP1 (590993 upstream) : SMAD2 (65728 downstream)																							aaggaaggaaggagaaagaaag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	63778788	63778791	+	IGR	DEL	GAAG	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:63778788_63778791delGAAG								CDH7 (230614 upstream) : CDH19 (392530 downstream)																							aaggaaggaagaaggaaggaagga	0.000													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	65042306	65042307	+	IGR	INS	-	T	T	rs75002100		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr18:65042306_65042307insT								CDH19 (771090 upstream) : DSEL (131512 downstream)																							tgtcttcttcattttttttttt	0.183													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	36913800	36913800	+	IGR	DEL	A	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr19:36913800delA								ZFP82 (4250 upstream) : ZNF566 (22222 downstream)																							CTTTGTCATTAAAAAAAAAAA	0.194													8	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	11060846	11060847	+	IGR	INS	-	TG	TG	rs149638295	by1000genomes	TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:11060846_11060847insTG								KCNF1 (6496 upstream) : C2orf50 (212332 downstream)																							gtgcgtgtgcctgtgtgtgtgt	0.386													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	42303348	42303348	+	IGR	DEL	A	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:42303348delA								PKDCC (17682 upstream) : EML4 (93142 downstream)																							actctgtctcaaaaaaaaaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	58479807	58479808	+	IGR	INS	-	A	A			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:58479807_58479808insA								FANCL (11292 upstream) : None (None downstream)																							TTTTGtaaattaaaaaaaaaaa	0.233													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	122630828	122630828	+	IGR	DEL	T	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr2:122630828delT								TSN (105402 upstream) : None (None downstream)																							ttcttcttccttttttttttt	0.055													3	4	---	---	---	---					
BPIL2	254240	broad.mit.edu	37	22	32853547	32853558	+	5'Flank	DEL	TCCATCCATCCA	-	-	rs71320927	by1000genomes	TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr22:32853547_32853558delTCCATCCATCCA	uc003amn.2	-						BPIL2_uc010gwo.2_5'Flank|BPIL2_uc011amb.1_Intron|BPIL2_uc003amo.3_Intron	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing							extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						catccatccgtccatccatccatccatccatc	0.057											OREG0003513	type=REGULATORY REGION|Gene=BPIL2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	7	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	196395240	196395241	+	IGR	INS	-	AAGA	AAGA			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr3:196395240_196395241insAAGA								LRRC33 (6368 upstream) : C3orf34 (37908 downstream)																							agagagaaatgaaggaaggaag	0.094													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	7372833	7372835	+	IGR	DEL	CCT	-	-	rs143913542		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr5:7372833_7372835delCCT								PAPD7 (615672 upstream) : ADCY2 (23508 downstream)																							accaccaccacctccaccatcac	0.000													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	38030649	38030652	+	IGR	DEL	TGTA	-	-	rs68102439		TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr5:38030649_38030652delTGTA								GDNF (190867 upstream) : EGFLAM (227881 downstream)																							tgtgtgtgtgtgtatatacatgaa	0.000													3	3	---	---	---	---					
EYS	346007	broad.mit.edu	37	6	66044995	66044998	+	Frame_Shift_Del	DEL	CTGA	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chr6:66044995_66044998delCTGA	uc011dxu.1	-	11	2179_2182	c.1641_1644delTCAG	c.(1639-1644)AGTCAGfs	p.S547fs	EYS_uc003peq.2_Frame_Shift_Del_p.S547fs|EYS_uc003per.1_Frame_Shift_Del_p.S547fs	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	547_548					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						ACCGATATTCCTGACTGTCTTCTT	0.353													13	19	---	---	---	---					
DMD	1756	broad.mit.edu	37	X	31838149	31838149	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EX-A1H5-01A-31D-A13W-08	TCGA-EX-A1H5-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	679411e8-ac8e-4d12-b15d-a2a3fac880c8	0a3a2d94-7e83-40a5-af85-0f76840a3037	g.chrX:31838149delG	uc004dda.1	-	50	7496	c.7252delC	c.(7252-7254)CAAfs	p.Q2418fs	DMD_uc004dcr.1_5'UTR|DMD_uc004dcs.1_5'UTR|DMD_uc004dct.1_5'UTR|DMD_uc004dcu.1_5'UTR|DMD_uc004dcv.1_5'UTR|DMD_uc004dcw.2_Frame_Shift_Del_p.Q1074fs|DMD_uc004dcx.2_Frame_Shift_Del_p.Q1077fs|DMD_uc004dcz.2_Frame_Shift_Del_p.Q2295fs|DMD_uc004dcy.1_Frame_Shift_Del_p.Q2414fs|DMD_uc004ddb.1_Frame_Shift_Del_p.Q2410fs|DMD_uc004ddd.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2418					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CTCAGCTCTTGAAGTAAACGG	0.433													58	97	---	---	---	---					
