Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974224	16974224	+	RNA	SNP	C	G	G	rs148702086	by1000genomes	TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr1:16974224C>G	uc009vow.2	+	5		c.1034C>G			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TTGGTCCCAGCCCCAGAGGGA	0.652000													3	42					0	0	0.000602	0	0
UBR4	23352	broad.mit.edu	37	1	19419826	19419826	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr1:19419826G>A	uc001bbi.2	-	96	14096	c.14092C>T	c.(14092-14094)CAC>TAC	p.H4698Y	UBR4_uc010ocv.1_Missense_Mutation_p.H221Y|UBR4_uc009vph.2_Missense_Mutation_p.H332Y|UBR4_uc010ocw.1_Missense_Mutation_p.H362Y|UBR4_uc001bbg.2_Missense_Mutation_p.H409Y|UBR4_uc001bbh.2_Missense_Mutation_p.H407Y	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4698					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CTAGGGATGTGCTTTTTCATG	0.507000													12	70					0	0	0.013537	0	0
USH2A	7399	broad.mit.edu	37	1	215901538	215901538	+	Missense_Mutation	SNP	T	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr1:215901538T>C	uc001hku.1	-	61	12287	c.11900A>G	c.(11899-11901)GAT>GGT	p.D3967G		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3967	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGCTGGAAAATCTTGAGGTGG	0.483000										HNSCC(13;0.011)			5	14					0	0	0.000602	0	0
OR2M5	127059	broad.mit.edu	37	1	248309230	248309230	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr1:248309230C>T	uc010pze.1	+	1	781	c.781C>T	c.(781-783)CGG>TGG	p.R261W		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CATGTACATACGGCCCACATC	0.517000													14	44					0	0	0.001855	0	0
KIF20B	9585	broad.mit.edu	37	10	91469150	91469150	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr10:91469150C>T	uc001kgs.1	+	4	355	c.283C>T	c.(283-285)CAA>TAA	p.Q95*	KIF20B_uc001kgr.1_Nonsense_Mutation_p.Q95*	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	95	Kinesin-motor.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						GAAAGAGCCTCAATGCATCCT	0.368000													11	35					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	10	134627759	134627759	+	Splice_Site	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr10:134627759C>T	uc010qux.1	-	46	6464	c.6464_splice	c.e46-1	p.E2155_splice		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		GTTAGCATTTCTGCAAGGAGA	0.557000													9	29					0	0	0.006214	0	0
OR4D10	390197	broad.mit.edu	37	11	59245562	59245562	+	Silent	SNP	C	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr11:59245562C>A	uc001nnz.1	+	1	660	c.660C>A	c.(658-660)GTC>GTA	p.V220V		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CCTACATAGTCATATTATCAT	0.488000													5	28					0.000602214	0.000630554	0.000602	1	0
MS4A6A	64231	broad.mit.edu	37	11	59949162	59949162	+	Silent	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr11:59949162C>T	uc001nor.2	-	2	277	c.39G>A	c.(37-39)GTG>GTA	p.V13V	MS4A6A_uc001noq.2_Silent_p.V13V|MS4A6A_uc001nos.3_Silent_p.V41V|MS4A6A_uc009ymv.2_Silent_p.V13V|MS4A6A_uc001not.2_Silent_p.V13V|MS4A6A_uc010rla.1_Silent_p.V41V|MS4A6A_uc010rlb.1_Silent_p.V13V	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	13	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TTGATGGGAGCACTATGATGG	0.438000													10	41					0	0	0.013537	0	0
FAT3	120114	broad.mit.edu	37	11	92616488	92616488	+	Missense_Mutation	SNP	T	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr11:92616488T>C	uc001pdj.3	+	23	12883	c.12866T>C	c.(12865-12867)CTC>CCC	p.L4289P	FAT3_uc001pdi.3_Missense_Mutation_p.L729P	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4289	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCCCCAACCTCCCCGCCGTG	0.652000										TCGA Ovarian(4;0.039)			9	41					0	0	0.005443	0	0
TIMELESS	8914	broad.mit.edu	37	12	56811921	56811921	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr12:56811921C>T	uc001slf.2	-	27	3619	c.3451G>A	c.(3451-3453)GAG>AAG	p.E1151K		NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	1151					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						CTATTACCCTCTGGGGATGCC	0.537000													61	155					0	0	0.014410	0	0
C12orf43	64897	broad.mit.edu	37	12	121444193	121444193	+	Missense_Mutation	SNP	T	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr12:121444193T>A	uc001tzh.1	-	4	315	c.292A>T	c.(292-294)ATT>TTT	p.I98F	C12orf43_uc009zxa.1_Missense_Mutation_p.I129F|C12orf43_uc010szo.1_Missense_Mutation_p.I56F|C12orf43_uc010szp.1_Missense_Mutation_p.I98F|C12orf43_uc001tzi.1_Missense_Mutation_p.I98F	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	98											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GAGATGGTAATGAAGCTACAG	0.388000													12	51					0	0	0.002450	0	0
SBNO1	55206	broad.mit.edu	37	12	123799990	123799990	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr12:123799990C>T	uc010tap.1	-	22	3050	c.3050G>A	c.(3049-3051)GGG>GAG	p.G1017E	SBNO1_uc010tao.1_Missense_Mutation_p.G1016E|SBNO1_uc010taq.1_5'UTR|SBNO1_uc001ues.1_5'UTR	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1017							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TGTAAGTGCCCCCTGTTAAAA	0.368000													16	47					0	0	0.004990	0	0
TP53	7157	broad.mit.edu	37	17	7572982	7572982	+	Missense_Mutation	SNP	G	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr17:7572982G>C	uc002gim.2	-	11	1321	c.1127C>G	c.(1126-1128)TCT>TGT	p.S376C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Missense_Mutation_p.S244C|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Missense_Mutation_p.S376C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	376	Basic (repression of DNA-binding).|Interaction with CARM1.		S -> T (in a sporadic cancer; somatic mutation).|S -> A (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.S376T(1)|p.?(1)|p.S376A(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCGGGAGGTAGACTGACCCTT	0.527000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			13	100					0	0	0.001855	0	0
RASL10B	91608	broad.mit.edu	37	17	34067538	34067538	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr17:34067538G>A	uc002hju.2	+	3	693	c.327G>A	c.(325-327)CAG>CAA	p.Q109Q		NM_033315	NP_201572	Q96S79	RSLAB_HUMAN	RAS-like, family 10, member B precursor	109	Small GTPase-like.				small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			lung(2)|breast(2)	4				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TCCGCCAGCAGATCCTGGAGA	0.572000													14	153					0	0	0.002450	0	0
GAS2L2	246176	broad.mit.edu	37	17	34073404	34073404	+	Missense_Mutation	SNP	G	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr17:34073404G>C	uc002hjv.1	-	6	1140	c.1112C>G	c.(1111-1113)TCT>TGT	p.S371C		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	371					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGCCTCCAAGATGGGATGAG	0.597000													30	178					0	0	0.008361	0	0
TACO1	51204	broad.mit.edu	37	17	61685348	61685348	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr17:61685348G>A	uc002jbd.2	+	5	1080	c.880G>A	c.(880-882)GAT>AAT	p.D294N		NM_016360	NP_057444	Q9BSH4	TACO1_HUMAN	translational activator of mitochondrially	294					regulation of translation	mitochondrion					0						TCACGTCTATGATAACATTGA	0.537000													9	48					0	0	0.004482	0	0
KIAA1632	57724	broad.mit.edu	37	18	43532369	43532369	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr18:43532369G>A	uc002lbm.2	-	3	1349	c.1249C>T	c.(1249-1251)CGA>TGA	p.R417*	KIAA1632_uc002lbo.1_Nonsense_Mutation_p.R417*	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	417					autophagy						0						TACATACCTCGGCCTTGCTGG	0.388000													7	38					0	0	0.003080	0	0
CCBE1	147372	broad.mit.edu	37	18	57106986	57106986	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr18:57106986C>T	uc002lib.2	-	8	908	c.838G>A	c.(838-840)GGC>AGC	p.G280S	CCBE1_uc010dpq.2_Intron|CCBE1_uc002lia.2_Missense_Mutation_p.G133S	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	280	Collagen-like 1.				lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				CCCCGTGGGCCGGGCTGCCCA	0.587000													9	36					0	0	0.006214	0	0
C19orf36	113177	broad.mit.edu	37	19	2097444	2097444	+	Missense_Mutation	SNP	G	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr19:2097444G>C	uc002luw.1	+	3	397	c.320G>C	c.(319-321)CGA>CCA	p.R107P	C19orf36_uc002lux.1_Missense_Mutation_p.R107P|C19orf36_uc010xgw.1_Missense_Mutation_p.R107P	NM_001039846	NP_001034935	Q1ZYL8	IZUM4_HUMAN	hypothetical protein LOC113177 isoform 3	107						extracellular region					0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AACGAGCTGCGAAACATCTTC	0.627000											OREG0025135	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	35					0	0	0.001984	0	0
ZNF681	148213	broad.mit.edu	37	19	23938281	23938281	+	Missense_Mutation	SNP	G	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr19:23938281G>T	uc002nrk.3	-	2	218	c.76C>A	c.(76-78)CAG>AAG	p.Q26K	ZNF681_uc002nrl.3_Intron|ZNF681_uc002nrj.3_Intron|ZNF681_uc002nrm.1_5'Flank	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	26	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATAAATTCTGCTGTATAGTG	0.343000													8	73					5.18039e-06	5.62262e-06	0.003080	1	0
ZNF329	79673	broad.mit.edu	37	19	58640849	58640849	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr19:58640849G>A	uc002qrn.2	-	4	259	c.22C>T	c.(22-24)CGG>TGG	p.R8W	ZNF329_uc010euk.1_RNA|ZNF329_uc002qro.1_RNA|ZNF329_uc002qrp.1_RNA	NM_024620	NP_078896	Q86UD4	ZN329_HUMAN	zinc finger protein 329	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.029)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)|Lung(386;0.216)		GGAAAATTCCGAGTCGTCATT	0.398000													48	141					0	0	0.011902	0	0
TPO	7173	broad.mit.edu	37	2	1500418	1500418	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:1500418G>A	uc002qww.2	+	13	2358	c.2267G>A	c.(2266-2268)TGT>TAT	p.C756Y	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.C699Y|TPO_uc002qwr.2_Missense_Mutation_p.C756Y|TPO_uc002qwx.2_Missense_Mutation_p.C699Y|TPO_uc010yio.1_Missense_Mutation_p.C583Y|TPO_uc010yip.1_Missense_Mutation_p.C756Y|TPO_uc002qwy.1_Missense_Mutation_p.C96Y|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	756	Extracellular (Potential).|Sushi.				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TTTGTGCACTGTGAGGAGTCT	0.542000													24	148					0	0	0.003330	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522786	95522786	+	RNA	SNP	T	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:95522786T>C	uc010fhp.2	-	1		c.35A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CGGCGTCGCCTTTGACAGCTG	0.687000													5	94					0	0	0.001168	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522815	95522815	+	RNA	SNP	A	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:95522815A>G	uc010fhp.2	-	1		c.6T>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATCTTCTGCAATTCGGAGTCC	0.652000													5	100					0	0	0.001168	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135891462	135891462	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:135891462C>T	uc002tuj.2	+	15	1383	c.1358C>T	c.(1357-1359)TCT>TTT	p.S453F	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.S453F|RAB3GAP1_uc010fng.2_Missense_Mutation_p.S278F|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	453						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		TCTGCACCATCTGACAGTTTA	0.348000													6	36					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179417593	179417593	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:179417593C>T	uc010zfg.1	-	284	82554	c.82330G>A	c.(82330-82332)GAA>AAA	p.E27444K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E21139K|TTN_uc010zfi.1_Missense_Mutation_p.E21072K|TTN_uc010zfj.1_Missense_Mutation_p.E20947K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28371							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCCAATTTCATTTTCTGCA	0.428000													7	5					0	0	0.001984	0	0
C2orf54	79919	broad.mit.edu	37	2	241831156	241831156	+	Missense_Mutation	SNP	C	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr2:241831156C>G	uc002wae.3	-	2	698	c.539G>C	c.(538-540)AGG>ACG	p.R180T	C2orf54_uc002wac.2_Missense_Mutation_p.R12T|C2orf54_uc002wad.2_Missense_Mutation_p.R31T	NM_001085437	NP_001078906	Q08AI8	CB054_HUMAN	hypothetical protein LOC79919 isoform 1	180											0		all_epithelial(40;3.99e-16)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)		CTGCTCCTCCCTCAGGCTGGC	0.652000													32	34					0	0	0.009535	0	0
PAK7	57144	broad.mit.edu	37	20	9546627	9546627	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr20:9546627G>A	uc002wnl.2	-	6	1940	c.1395C>T	c.(1393-1395)ATC>ATT	p.I465I	PAK7_uc002wnk.2_Silent_p.I465I|PAK7_uc002wnj.2_Silent_p.I465I|PAK7_uc010gby.1_Silent_p.I465I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	465	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TCTCGGTGGCGATGCATACGA	0.527000													28	57					0	0	0.010818	0	0
NINL	22981	broad.mit.edu	37	20	25491352	25491352	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr20:25491352C>T	uc002wux.1	-	5	549	c.475G>A	c.(475-477)GAG>AAG	p.E159K	NINL_uc010gdn.1_Missense_Mutation_p.E159K|NINL_uc010gdo.1_5'UTR|NINL_uc010ztf.1_Missense_Mutation_p.E175K	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	159					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTAGTGCTCTCGGCCTCTTCA	0.512000													29	67					0	0	0.006320	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333000													4	23					0	0	0.000602	0	0
PRIC285	85441	broad.mit.edu	37	20	62192594	62192594	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr20:62192594G>A	uc002yfm.2	-	15	7879	c.6987C>T	c.(6985-6987)TTC>TTT	p.F2329F	PRIC285_uc002yfl.1_Silent_p.F1760F	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2329					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GGTCCAGCTCGAACTTCCGAG	0.632000													48	88					0	0	0.014410	0	0
SCN10A	6336	broad.mit.edu	37	3	38793865	38793865	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:38793865G>A	uc003ciq.2	-	11	1600	c.1600C>T	c.(1600-1602)CGG>TGG	p.R534W		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	534					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGAGAGCCCCGATGGCTTTCG	0.597000													12	6					0	0	0.010729	0	0
IMPG2	50939	broad.mit.edu	37	3	100962778	100962778	+	Silent	SNP	T	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:100962778T>A	uc003duq.1	-	13	2600	c.2397A>T	c.(2395-2397)GCA>GCT	p.A799A	IMPG2_uc011bhe.1_Silent_p.A662A	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	799	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GTGGTGTACTTGCCAATATGT	0.433000													9	20					0	0	0.006214	0	0
HSPBAP1	79663	broad.mit.edu	37	3	122459641	122459641	+	Missense_Mutation	SNP	C	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:122459641C>G	uc003efu.1	-	8	1141	c.1018G>C	c.(1018-1020)GAG>CAG	p.E340Q	HSPBAP1_uc003eft.1_Missense_Mutation_p.E51Q	NM_024610	NP_078886	Q96EW2	HBAP1_HUMAN	Hspb associated protein 1	340						cytoplasm				ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(114;0.0531)		TCTACTACCTCAGATGTTCTG	0.443000													22	144					0	0	0.012319	0	0
ADCY5	111	broad.mit.edu	37	3	123044256	123044256	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:123044256G>A	uc003egh.1	-	8	2001	c.2001C>T	c.(1999-2001)ATC>ATT	p.I667I	ADCY5_uc003egg.1_Silent_p.I300I|ADCY5_uc003egi.1_Silent_p.I226I	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	667	Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GGTTGTGCCCGATGGAGTTGG	0.582000													69	294					0	0	0.014410	0	0
COL6A6	131873	broad.mit.edu	37	3	130360553	130360553	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:130360553C>T	uc010htl.2	+	28	5180	c.5149C>T	c.(5149-5151)CGT>TGT	p.R1717C	COL6A6_uc003eni.3_Translation_Start_Site	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1717	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ACCTCCTGGACGTAAGGTAAG	0.383000													3	8					0	0	0.009096	0	0
ABCC5	10057	broad.mit.edu	37	3	183689641	183689641	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:183689641C>T	uc003fmg.2	-	11	1636	c.1471G>A	c.(1471-1473)GAG>AAG	p.E491K	ABCC5_uc011bqt.1_Missense_Mutation_p.E19K|ABCC5_uc010hxl.2_Missense_Mutation_p.E491K	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	491						integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TTTTTCATCTCTATCTTGATG	0.463000													7	47					0	0	0.001984	0	0
WDR53	348793	broad.mit.edu	37	3	196287874	196287874	+	Missense_Mutation	SNP	T	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:196287874T>C	uc003fwt.2	-	3	944	c.473A>G	c.(472-474)GAT>GGT	p.D158G		NM_182627	NP_872433	Q7Z5U6	WDR53_HUMAN	WD repeat domain 53	158	WD 3.									breast(1)|skin(1)	2	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.6e-23)|all cancers(36;1.54e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.29e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CACCTGCATATCCAGTCCACA	0.428000													24	84					0	0	0.003330	0	0
IQCG	84223	broad.mit.edu	37	3	197639609	197639609	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr3:197639609C>T	uc003fyo.2	-	8	1046	c.900G>A	c.(898-900)ATG>ATA	p.M300I	IQCG_uc003fyn.2_Missense_Mutation_p.M202I|IQCG_uc003fyp.2_Missense_Mutation_p.M300I|IQCG_uc003fym.2_Missense_Mutation_p.M1I	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	300											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		CTTCGGTTTTCATCCTGAGTT	0.483000													36	316					0	0	0.005524	0	0
GABRG1	2565	broad.mit.edu	37	4	46066531	46066531	+	Silent	SNP	A	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:46066531A>T	uc003gxb.2	-	5	704	c.552T>A	c.(550-552)ATT>ATA	p.I184I		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	184	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATTCTGCATTAATTGTCAATC	0.284000													3	15					0	0	0.004672	0	0
UGT2A3	79799	broad.mit.edu	37	4	69796884	69796884	+	Missense_Mutation	SNP	T	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:69796884T>G	uc003hef.2	-	4	1104	c.1073A>C	c.(1072-1074)AAT>ACT	p.N358T	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	358	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AAGAAGATCATTCTGGGGTAT	0.358000													3	4					0	0	0.004672	0	0
TRPC3	7222	broad.mit.edu	37	4	122853996	122853996	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:122853996G>A	uc003ieg.2	-	2	491	c.417C>T	c.(415-417)AAC>AAT	p.N139N	TRPC3_uc010inr.2_Silent_p.N66N|TRPC3_uc003ief.2_Silent_p.N66N|TRPC3_uc011cgl.1_Translation_Start_Site	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	54	Cytoplasmic (Potential).|ANK 1.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CGCAGTTGACGTTCAGCGTCT	0.637000													10	34					0	0	0.008291	0	0
ADAD1	132612	broad.mit.edu	37	4	123332499	123332499	+	Missense_Mutation	SNP	T	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:123332499T>A	uc003ieo.2	+	9	1203	c.971T>A	c.(970-972)CTT>CAT	p.L324H	ADAD1_uc003iep.2_Missense_Mutation_p.L313H|ADAD1_uc003ieq.2_Missense_Mutation_p.L306H	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	324	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						AACATTTGCCTTTACATGAAC	0.353000													3	6					0	0	0.009096	0	0
ADAM29	11086	broad.mit.edu	37	4	175898988	175898988	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:175898988G>A	uc003iuc.2	+	5	2982	c.2312G>A	c.(2311-2313)CGG>CAG	p.R771Q	ADAM29_uc003iud.2_Missense_Mutation_p.R771Q|ADAM29_uc010irr.2_Missense_Mutation_p.R771Q|ADAM29_uc011cki.1_Missense_Mutation_p.R771Q	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	771	Cytoplasmic (Potential).|4.|9 X 9 AA approximate repeats.			QPRVM -> HPQLT (in Ref. 1; AAF03777).	proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AGTCAACCTCGGGTGATGCCT	0.577000													9	23					0	0	0.010729	0	0
ANKRD37	353322	broad.mit.edu	37	4	186320755	186320755	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:186320755G>A	uc003ixm.2	+	4	542	c.304G>A	c.(304-306)GAT>AAT	p.D102N	ANKRD37_uc011cks.1_Missense_Mutation_p.D102N|UFSP2_uc003ixn.2_3'UTR|UFSP2_uc003ixo.2_3'UTR|UFSP2_uc003ixq.2_3'UTR|UFSP2_uc003ixp.2_RNA	NM_181726	NP_859077	Q7Z713	ANR37_HUMAN	ankyrin repeat domain 37	102						cytoplasm|nucleus					0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.27e-25)|Epithelial(43;1.02e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.14e-11)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000118)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|COAD - Colon adenocarcinoma(29;0.00939)|READ - Rectum adenocarcinoma(43;0.155)		AACAGCTGAAGATCTCGCTTG	0.353000													18	19					0	0	0.008871	0	0
ERCC8	1161	broad.mit.edu	37	5	60186820	60186820	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:60186820C>T	uc003jsm.3	-	10	1007	c.937G>A	c.(937-939)GGT>AGT	p.G313S	ERCC8_uc003jsk.2_RNA|ERCC8_uc003jsl.3_Missense_Mutation_p.G255S|ERCC8_uc011cqp.1_Missense_Mutation_p.G160S	NM_000082	NP_000073	Q13216	ERCC8_HUMAN	excision repair cross-complementing rodent	313					positive regulation of DNA repair|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein polyubiquitination|response to oxidative stress|response to UV|response to UV|transcription-coupled nucleotide-excision repair	Cul4A-RING ubiquitin ligase complex|nuclear matrix|nucleoplasm|nucleotide-excision repair complex|soluble fraction	protein binding|protein complex binding				0		Lung NSC(810;1.51e-06)|Prostate(74;0.0322)|Ovarian(174;0.0481)|Breast(144;0.077)				ATGGTGCTACCATATGGTACA	0.353000								Direct_reversal_of_damage|NER					8	37					0	0	0.004482	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64766877	64766877	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:64766877C>T	uc003jtp.2	-	3	1004	c.190G>A	c.(190-192)GAT>AAT	p.D64N	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	64					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GAGTGTTTATCATTTTTCACA	0.378000													17	30					0	0	0.004990	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167432	140167432	+	Silent	SNP	A	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140167432A>G	uc003lhb.2	+	1	1557	c.1557A>G	c.(1555-1557)GCA>GCG	p.A519A	PCDHA1_uc003lha.2_Silent_p.A519A|PCDHA1_uc003lgz.2_Silent_p.A519A	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	519	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGTACGCACTGCAGCCCC	0.682000													25	193					0	0	0.013726	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167441	140167441	+	Silent	SNP	C	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140167441C>G	uc003lhb.2	+	1	1566	c.1566C>G	c.(1564-1566)CCC>CCG	p.P522P	PCDHA1_uc003lha.2_Silent_p.P522P|PCDHA1_uc003lgz.2_Silent_p.P522P	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	522	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTGCAGCCCCTGGACCACG	0.677000													28	201					0	0	0.009718	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167459	140167459	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140167459G>A	uc003lhb.2	+	1	1584	c.1584G>A	c.(1582-1584)CTG>CTA	p.L528L	PCDHA1_uc003lha.2_Silent_p.L528L|PCDHA1_uc003lgz.2_Silent_p.L528L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	528	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGAGGAGCTGGAGCTGCTGC	0.677000													22	196					0	0	0.006320	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167468	140167468	+	Silent	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140167468G>A	uc003lhb.2	+	1	1593	c.1593G>A	c.(1591-1593)CTG>CTA	p.L531L	PCDHA1_uc003lha.2_Silent_p.L531L|PCDHA1_uc003lgz.2_Silent_p.L531L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	531	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGCTGCTGCAGTTCCAGG	0.692000													6	197					0	0	0.013537	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175999	140175999	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140175999G>A	uc003lhd.2	+	1	1556	c.1450G>A	c.(1450-1452)GCG>ACG	p.A484T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.A484T|PCDHA2_uc011czy.1_Missense_Mutation_p.A484T	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	484	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGCGGACGCGCAGGAGAA	0.657000													27	170					0	0	0.010818	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730746	140730746	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr5:140730746G>A	uc003ljo.1	+	1	919	c.919G>A	c.(919-921)GAG>AAG	p.E307K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.E307K	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	307	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATTTTGAAGAGACAAGTAG	0.418000													37	180					0	0	0.005524	0	0
HIVEP1	3096	broad.mit.edu	37	6	12121870	12121870	+	Silent	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr6:12121870C>T	uc003nac.2	+	4	2021	c.1842C>T	c.(1840-1842)TCC>TCT	p.S614S	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	614					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GTGGAGTCTCCAGGTTGGAGA	0.502000													6	20					0	0	0.001168	0	0
ZNF318	24149	broad.mit.edu	37	6	43323777	43323777	+	Missense_Mutation	SNP	A	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr6:43323777A>G	uc003oux.2	-	4	1373	c.1295T>C	c.(1294-1296)ATT>ACT	p.I432T	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	432					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTTGTTTTCAATCTCTGAGGC	0.522000													10	40					0	0	0.006214	0	0
RFX6	222546	broad.mit.edu	37	6	117199067	117199067	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr6:117199067C>T	uc003pxm.2	+	2	395	c.332C>T	c.(331-333)ACG>ATG	p.T111M		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	111					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AAAACCATCACGCAGATTGTG	0.483000													7	40					0	0	0.001984	0	0
C7orf57	136288	broad.mit.edu	37	7	48092508	48092508	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr7:48092508G>A	uc003toh.3	+	7	1029	c.817G>A	c.(817-819)GAG>AAG	p.E273K	C7orf57_uc003toi.3_Missense_Mutation_p.E131K	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	273										ovary(1)	1						TGAAGGTCCTGAGGACACCCC	0.547000													3	14					0	0	0.004672	0	0
ABCA13	154664	broad.mit.edu	37	7	48311710	48311710	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr7:48311710C>T	uc003toq.2	+	17	2472	c.2447C>T	c.(2446-2448)CCA>CTA	p.P816L	ABCA13_uc010kyr.2_Missense_Mutation_p.P319L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	816					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGGAAGGAACCAAAAAATCTT	0.363000													3	5					0	0	0.004672	0	0
MUC17	140453	broad.mit.edu	37	7	100685735	100685735	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr7:100685735G>A	uc003uxp.1	+	3	11091	c.11038G>A	c.(11038-11040)GAA>AAA	p.E3680K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3680	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGTGACTCCTGAAGGTACCAC	0.522000													49	107					0	0	0.014410	0	0
ADAM28	10863	broad.mit.edu	37	8	24181361	24181361	+	Silent	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr8:24181361C>T	uc003xdy.2	+	9	818	c.735C>T	c.(733-735)CTC>CTT	p.L245L	ADAM28_uc003xdx.2_Silent_p.L245L|ADAM28_uc011kzz.1_Silent_p.L12L|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'Flank	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	245	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATAAAAAGCTCAATACTCATG	0.294000													3	7					0	0	0.004672	0	0
DMRT3	58524	broad.mit.edu	37	9	990870	990870	+	Silent	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:990870C>T	uc003zgw.1	+	2	1322	c.1284C>T	c.(1282-1284)CGC>CGT	p.R428R		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	428					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity	p.R428C(1)		ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TTCCTGCCCGCGCCACGGAAG	0.552000													5	26					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	9	68728896	68728896	+	RNA	SNP	T	G	G			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:68728896T>G	uc004aez.1	+	3		c.737T>G			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		gaaACCCAGCTTGATATGTTG	0.209000													3	50					0	0	0.001168	0	0
C9orf163	158055	broad.mit.edu	37	9	139379423	139379423	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:139379423G>A	uc004chy.2	+	1	1477	c.523G>A	c.(523-525)GCG>ACG	p.A175T	SEC16A_uc004chx.2_5'Flank|SEC16A_uc010nbo.1_5'Flank	NM_152571	NP_689784	Q8N9P6	CI163_HUMAN	hypothetical protein LOC158055	175							protein binding				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.36e-06)|Epithelial(140;5.65e-06)		TTTGCCGCTCGCGAGTTCAAA	0.622000											OREG0019617	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	54					0	0	0.007291	0	0
ZBED1	9189	broad.mit.edu	37	X	2406946	2406946	+	Silent	SNP	C	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:2406946C>A	uc004cqg.2	-	2	2016	c.1815G>T	c.(1813-1815)CTG>CTT	p.L605L	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Silent_p.L605L	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	605						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGTACTTCTGCAGCACCTTGG	0.652000													47	511					1.47857e-17	1.68709e-17	0.014410	1	0
GEMIN8	54960	broad.mit.edu	37	X	14027221	14027221	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:14027221G>T	uc004cwb.2	-	5	883	c.540C>A	c.(538-540)TGC>TGA	p.C180*	GEMIN8_uc004cwc.2_Nonsense_Mutation_p.C180*|GEMIN8_uc004cwd.2_Nonsense_Mutation_p.C180*	NM_017856	NP_060326	Q9NWZ8	GEMI8_HUMAN	gem (nuclear organelle) associated protein 8	180					spliceosomal snRNP assembly	Cajal body|cytoplasm|SMN complex|spliceosomal complex	protein binding				0						GGCGGGTGTTGCAGTACAGGT	0.592000													14	74					4.7546e-09	5.2895e-09	0.004007	1	0
CYBB	1536	broad.mit.edu	37	X	37663318	37663318	+	Silent	SNP	A	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:37663318A>T	uc004ddr.2	+	9	1147	c.1086A>T	c.(1084-1086)ACA>ACT	p.T362T	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Silent_p.T330T|CYBB_uc011mkg.1_Silent_p.T95T	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	362	Cytoplasmic (Potential).|FAD-binding FR-type.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGGACTGGACAGAGGGGCTGT	0.478000													3	16					0	0	0.009096	0	0
WDR13	64743	broad.mit.edu	37	X	48458950	48458950	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:48458950C>T	uc004dkh.1	+	6	914	c.767C>T	c.(766-768)CCT>CTT	p.P256L	WDR13_uc010nif.1_Missense_Mutation_p.P134L|WDR13_uc004dki.1_Missense_Mutation_p.P164L|WDR13_uc004dkj.1_Missense_Mutation_p.P256L|WDR13_uc004dkk.1_Missense_Mutation_p.P164L|WDR13_uc004dkl.3_Missense_Mutation_p.P164L|WDR13_uc011mme.1_Missense_Mutation_p.P134L	NM_017883	NP_060353	Q9H1Z4	WDR13_HUMAN	WD repeat domain 13 protein	256						cytoplasm|nucleus				ovary(2)	2						CGAGAGATCCCTGACCCCGAT	0.597000													10	28					0	0	0.008291	0	0
MED12	9968	broad.mit.edu	37	X	70342153	70342153	+	Missense_Mutation	SNP	C	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:70342153C>A	uc004dyy.2	+	8	1404	c.1205C>A	c.(1204-1206)TCC>TAC	p.S402Y	MED12_uc011mpq.1_Missense_Mutation_p.S402Y|MED12_uc004dyz.2_Missense_Mutation_p.S402Y|MED12_uc004dza.2_Missense_Mutation_p.S249Y	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	402					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					ATTGCCCCGTCCAACCTGCCC	0.517000													37	118					1.66425e-11	1.87491e-11	0.004878	1	0
TAF1	6872	broad.mit.edu	37	X	70683738	70683738	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:70683738G>A	uc004dzu.3	+	38	5512	c.5461G>A	c.(5461-5463)GGT>AGT	p.G1821S	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.G1842S|TAF1_uc004dzv.3_Missense_Mutation_p.G1029S|TAF1_uc010nle.1_Intron|TAF1_uc010nlf.1_Intron|TAF1_uc004dzx.2_Intron|TAF1_uc004dzy.2_Intron|TAF1_uc004dzw.1_Intron|TAF1_uc010nlg.1_Intron	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1821	Asp/Glu-rich (acidic tail).|Protein kinase 2.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				CAGCAGCATCGGTGGGTATGA	0.453000													3	15					0	0	0.004672	0	0
IRS4	8471	broad.mit.edu	37	X	107979294	107979294	+	Missense_Mutation	SNP	C	T	T			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:107979294C>T	uc004eoc.2	-	1	314	c.281G>A	c.(280-282)CGC>CAC	p.R94H		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	94	PH.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CACGAAGTAGCGCCTGTGCCC	0.632000													29	250					0	0	0.010818	0	0
CT45A5	441521	broad.mit.edu	37	X	134947931	134947931	+	Missense_Mutation	SNP	T	C	C			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:134947931T>C	uc004eze.2	-	3	639	c.394A>G	c.(394-396)AAG>GAG	p.K132E	CT45A5_uc011mvu.1_Missense_Mutation_p.K132E	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	132											0						CGGATTTCCTTCACTACTTGA	0.383000													14	129					0	0	0.002450	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290713	141290713	+	Missense_Mutation	SNP	G	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chrX:141290713G>A	uc004fbu.1	-	3	1409	c.1061C>T	c.(1060-1062)GCC>GTC	p.A354V		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	354						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATGACAGTGGCATCATCTGC	0.478000										HNSCC(46;0.14)			19	121					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	15	51099433	51099436	+	IGR	DEL	CTTC	-	-			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr15:51099433_51099436delCTTC								SPPL2A (41523 upstream) : AP4E1 (101510 downstream)																							ccttccttttcttccttccttcct	0.069													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	14722932	14722933	+	IGR	INS	-	A	A			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr21:14722932_14722933insA								C21orf99 (232363 upstream) : POTED (259565 downstream)																							GAAGAAAGAACAAAAACAGCCC	0.366													2	4	---	---	---	---					
TACC3	10460	broad.mit.edu	37	4	1732898	1732899	+	Splice_Site	INS	-	GAGA	GAGA			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:1732898_1732899insGAGA	uc003gdo.2	+	6	1570	c.1462_splice	c.e6-1	p.E488_splice	TACC3_uc010ibz.2_Splice_Site_p.E488_splice|TACC3_uc003gdp.2_Splice_Site_p.E128_splice|TACC3_uc010ica.2_5'UTR	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing							centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			CTTTCCTCCAGGAGAGAGCCTT	0.599													49	205	---	---	---	---					
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	-	-	rs111245977		TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr4:4228274_4228282delCCACAGCAG	uc003ghp.1	-	1	340_348	c.310_318delCTGCTGTGG	c.(310-318)CTGCTGTGGdel	p.LLW104del		NM_177998	NP_819056	Q7RTM1	OTOP1_HUMAN	otopetrin 1	104_106	Helical; (Potential).				biomineral tissue development	extracellular space|integral to membrane				ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ACCACAGCATCCACAGCAGCTGCAGCAGC	0.727													8	24	---	---	---	---					
CDC5L	988	broad.mit.edu	37	6	44361207	44361207	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr6:44361207delT	uc003oxl.2	+	4	595	c.336delT	c.(334-336)AATfs	p.N112fs		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	112					cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AAAGAGACAATGAAGAGGAAA	0.398													15	43	---	---	---	---					
RECK	8434	broad.mit.edu	37	9	36083522	36083522	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:36083522delT	uc003zyv.2	+	8	686	c.600delT	c.(598-600)AATfs	p.N200fs	RECK_uc010mld.2_Frame_Shift_Del_p.N200fs|RECK_uc003zyu.3_Frame_Shift_Del_p.N200fs|RECK_uc003zyw.2_Frame_Shift_Del_p.N72fs|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	200	5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			GTGTGAACAATTATACTCAAT	0.348													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	97260488	97260491	+	IGR	DEL	TGGA	-	-			TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:97260488_97260491delTGGA								HIATL1 (37287 upstream) : FBP2 (60514 downstream)																							ttgcccaggctggatggagtgcag	0.088													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	136184772	136184774	+	IGR	DEL	CTG	-	-	rs72449624		TCGA-BI-A20A-01A-11D-A14W-08	TCGA-BI-A20A-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	26397cf7-5149-4147-8d13-1083d5ccf9f0	76996ad8-2d20-4af4-88c2-67aad56b06a3	g.chr9:136184772_136184774delCTG								ABO (34142 upstream) : SURF6 (12779 downstream)																							GAGGCTGAGACTGCTGGATGAAG	0.621													2	4	---	---	---	---					
