Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MFN2	9927	broad.mit.edu	37	1	12058888	12058888	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:12058888G>A	uc001atn.3	+	7	1114	c.661G>A	c.(661-663)GAT>AAT	p.D221N	MFN2_uc009vni.2_Missense_Mutation_p.D221N	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	221	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		TCTGGATGCTGATGTGTTTGT	0.552000													5	365					0	0	0.014758	0	0
COL16A1	1307	broad.mit.edu	37	1	32124127	32124127	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:32124127G>T	uc001btk.1	-	64	4347	c.3982C>A	c.(3982-3984)CCA>ACA	p.P1328T	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Missense_Mutation_p.P1126T	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1328	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GGCTGGCCTGGGAGGCCTGCA	0.607000													3	22					6.4e-05	6.75068e-05	0.115264	1	0
COL16A1	1307	broad.mit.edu	37	1	32130808	32130808	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:32130808C>T	uc001btk.1	-	56	3885	c.3520G>A	c.(3520-3522)GGA>AGA	p.G1174R	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Missense_Mutation_p.G972R	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1174	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CCAGGTGATCCAACTTTGCCT	0.587000													8	230					0	0	0.038147	0	0
MAP7D1	55700	broad.mit.edu	37	1	36643631	36643631	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:36643631G>T	uc001bzz.2	+	9	1753	c.1537G>T	c.(1537-1539)GAG>TAG	p.E513*	MAP7D1_uc001caa.2_Nonsense_Mutation_p.E481*|MAP7D1_uc001cab.2_Nonsense_Mutation_p.E476*|MAP7D1_uc001cac.2_Nonsense_Mutation_p.E213*|MAP7D1_uc001cad.2_Nonsense_Mutation_p.E59*	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	513	Pro-rich.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				GAGGAAGGAGGAGGCAAAGGA	0.701000													15	24					1.5739e-10	1.69102e-10	0.146539	1	0
GJA9	81025	broad.mit.edu	37	1	39341324	39341324	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:39341324G>A	uc001cct.1	-	2	728	c.447C>T	c.(445-447)CTC>CTT	p.L149L	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	149	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			AGGTTCCTCTGAGTGGAGCTT	0.423000													66	147					0	0	0.139131	0	0
KIAA1324	57535	broad.mit.edu	37	1	109714534	109714534	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:109714534G>A	uc001dwq.2	+	5	650	c.514G>A	c.(514-516)GAA>AAA	p.E172K	KIAA1324_uc009wex.1_Missense_Mutation_p.E172K|KIAA1324_uc009wey.2_Missense_Mutation_p.E172K|KIAA1324_uc010ovg.1_Missense_Mutation_p.E70K	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	172	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CAACACGGACGAATGCACAGC	0.532000													19	143					0	0	0.038395	0	0
NBPF10	100132406	broad.mit.edu	37	1	145299857	145299857	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:145299857G>C	uc001end.3	+	6	941	c.906G>C	c.(904-906)AAG>AAC	p.K302N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.K302N|NBPF10_uc010oyi.1_5'Flank|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	302											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TGGCAGAGAAGAAACAGCAGT	0.468000													5	591					0	0	0.080935	0	0
FLG	2312	broad.mit.edu	37	1	152281070	152281070	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:152281070C>T	uc001ezu.1	-	3	6328	c.6292G>A	c.(6292-6294)GAA>AAA	p.E2098K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2098	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCAGACTGTTCATGAGTGCTC	0.572000									Ichthyosis				131	257					0	0	0.139131	0	0
FLG	2312	broad.mit.edu	37	1	152281894	152281894	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:152281894C>A	uc001ezu.1	-	3	5504	c.5468G>T	c.(5467-5469)GGA>GTA	p.G1823V		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1823	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCCTGCCTTCCTCCTCTGCT	0.582000									Ichthyosis				253	549					1.52395e-124	1.69246e-124	0.139131	1	0
DENND4B	9909	broad.mit.edu	37	1	153902843	153902843	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:153902843C>T	uc001fdd.1	-	28	4822	c.4421G>A	c.(4420-4422)CGG>CAG	p.R1474Q	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1474										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CTGCGCCCGCCGGTGCCTCAG	0.552000													33	51					0	0	0.054565	0	0
RGL1	23179	broad.mit.edu	37	1	183874076	183874076	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:183874076G>A	uc001gqo.2	+	13	1600	c.1443G>A	c.(1441-1443)CAG>CAA	p.Q481Q	RGL1_uc010pof.1_Silent_p.Q286Q|RGL1_uc001gqm.2_Silent_p.Q516Q|RGL1_uc010pog.1_Silent_p.Q479Q|RGL1_uc010poh.1_Silent_p.Q479Q|RGL1_uc010poi.1_Silent_p.Q452Q	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	481	Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AGTGGTTCCAGAGGCAGCAGC	0.483000													63	86					0	0	0.139131	0	0
TPR	7175	broad.mit.edu	37	1	186292910	186292910	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:186292910G>A	uc001grv.2	-	43	6502	c.6205C>T	c.(6205-6207)CGA>TGA	p.R2069*		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2069					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TGAGGTGCTCGAGGGGCCTGT	0.512000			T	NTRK1	papillary thyroid								66	133					0	0	0.139131	0	0
TNNT2	7139	broad.mit.edu	37	1	201333443	201333443	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:201333443G>A	uc001gwf.2	-	11	541	c.472C>T	c.(472-474)CGG>TGG	p.R158W	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_5'Flank|TNNT2_uc001gwg.2_Missense_Mutation_p.R148W|TNNT2_uc001gwh.2_Missense_Mutation_p.R143W|TNNT2_uc001gwi.2_Missense_Mutation_p.R118W|TNNT2_uc009wzr.2_Missense_Mutation_p.R89W|TNNT2_uc001gwj.1_5'Flank|TNNT2_uc009wzs.1_Missense_Mutation_p.R123W|TNNT2_uc001gwk.1_Missense_Mutation_p.R89W|TNNT2_uc009wzt.1_Missense_Mutation_p.R148W	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	158					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						CGGTTCTGCCGCTCCTTCTCC	0.662000													26	34					0	0	0.144211	0	0
SEPHS1	22929	broad.mit.edu	37	10	13386938	13386938	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:13386938C>T	uc001imk.2	-	2	372	c.13G>A	c.(13-15)GAG>AAG	p.E5K	SEPHS1_uc001imi.2_Missense_Mutation_p.E5K|SEPHS1_uc001imj.2_Missense_Mutation_p.E5K|SEPHS1_uc010qbt.1_Intron|SEPHS1_uc009xje.2_Missense_Mutation_p.E5K	NM_012247	NP_036379	P49903	SPS1_HUMAN	selenophosphate synthetase 1	5					protein modification process		ATP binding|GTP binding|selenide, water dikinase activity			skin(1)	1						TTAAAGGACTCCCGCGTAGAC	0.562000													120	140					0	0	0.139131	0	0
CDNF	441549	broad.mit.edu	37	10	14870197	14870197	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:14870197C>T	uc001inb.1	-	2	228	c.190G>A	c.(190-192)GAG>AAG	p.E64K	CDNF_uc010qbv.1_Missense_Mutation_p.E64K|CDNF_uc001inc.1_5'UTR	NM_001029954	NP_001025125	Q49AH0	CDNF_HUMAN	arginine-rich, mutated in early stage	64						extracellular region	growth factor activity				0						AATTCTTTCTCTATAGTGTCC	0.368000													8	243					0	0	0.047766	0	0
DCLRE1C	64421	broad.mit.edu	37	10	14976735	14976735	+	Silent	SNP	G	A	A	rs61749165		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:14976735G>A	uc001inn.2	-	7	589	c.504C>T	c.(502-504)TTC>TTT	p.F168F	DCLRE1C_uc010qbx.1_Silent_p.F168F|DCLRE1C_uc001inl.2_Silent_p.F48F|DCLRE1C_uc009xji.2_Silent_p.F53F|DCLRE1C_uc001inm.2_Silent_p.F48F|DCLRE1C_uc001ino.2_Silent_p.F53F|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Silent_p.F48F|DCLRE1C_uc001inq.2_Silent_p.F48F|DCLRE1C_uc001inr.2_Silent_p.F53F|DCLRE1C_uc009xjj.1_RNA	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	168					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						TTGGATCACAGAACGTAGTAT	0.368000								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					152	165					0	0	0.139131	0	0
LYZL1	84569	broad.mit.edu	37	10	29581604	29581604	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:29581604C>G	uc001iul.2	+	3	491	c.434C>G	c.(433-435)TCA>TGA	p.S145*		NM_032517	NP_115906	Q6UWQ5	LYZL1_HUMAN	lysozyme-like 1	99					cell wall macromolecule catabolic process	extracellular region	lysozyme activity				0		Breast(68;0.203)				GTCGCCTGCTCAGGTGAGGCT	0.522000													3	178					0	0	0.115264	0	0
CCNY	219771	broad.mit.edu	37	10	35818947	35818947	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:35818947C>T	uc001iyw.3	+	6	628	c.448C>T	c.(448-450)CAC>TAC	p.H150Y	CCNY_uc001iyu.3_Missense_Mutation_p.H96Y|CCNY_uc001iyv.3_Missense_Mutation_p.H96Y|CCNY_uc001iyx.3_Missense_Mutation_p.H96Y|CCNY_uc009xmb.2_Missense_Mutation_p.H125Y|CCNY_uc010qet.1_Missense_Mutation_p.H17Y	NM_145012	NP_659449	Q8ND76	CCNY_HUMAN	cyclin Y isoform 1	150	Cyclin N-terminal.				cell division|G2/M transition of mitotic cell cycle|positive regulation of cyclin-dependent protein kinase activity|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	cyclin-dependent protein kinase regulator activity|protein kinase binding				0						TGAAAATCTTCACCCTCTTTC	0.363000													59	291					0	0	0.139131	0	0
AGAP6	414189	broad.mit.edu	37	10	51749089	51749089	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:51749089C>G	uc001jix.3	+	2	643	c.245C>G	c.(244-246)GCC>GGC	p.A82G		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	82					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						AACCTTTCTGCCAATCCAGAG	0.343000													5	49					0	0	0.069234	0	0
AGAP6	414189	broad.mit.edu	37	10	51749117	51749117	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:51749117G>A	uc001jix.3	+	2	671	c.273G>A	c.(271-273)CAG>CAA	p.Q91Q		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	91					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						CAATATTCCAGAGGAACTCTC	0.358000													5	42					0	0	0.058154	0	0
HERC4	26091	broad.mit.edu	37	10	69726539	69726539	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:69726539C>T	uc001jng.3	-	16	2138	c.1827G>A	c.(1825-1827)CAG>CAA	p.Q609Q	HERC4_uc009xpq.2_Silent_p.Q150Q|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Silent_p.Q609Q|HERC4_uc009xpr.2_Silent_p.Q609Q|HERC4_uc001jni.3_Silent_p.Q353Q|HERC4_uc001jnj.2_Silent_p.Q609Q	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	609					cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						ACTGTATAATCTGTCCCATTT	0.269000													15	14					0	0	0.119110	0	0
KIAA1274	27143	broad.mit.edu	37	10	72298040	72298040	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:72298040C>T	uc001jrd.3	+	12	1609	c.1328C>T	c.(1327-1329)CCG>CTG	p.P443L	KIAA1274_uc001jre.3_5'Flank	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	443										ovary(2)|central_nervous_system(1)	3						CTGCAGTACCCGCTGGCCTTT	0.647000													27	30					0	0	0.116897	0	0
PLAU	5328	broad.mit.edu	37	10	75672700	75672700	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:75672700A>T	uc001jwa.2	+	5	358	c.212A>T	c.(211-213)TAT>TTT	p.Y71F	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Missense_Mutation_p.Y54F|PLAU_uc010qkx.1_5'UTR|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Missense_Mutation_p.Y71F|PLAU_uc009xrq.1_Missense_Mutation_p.Y35F	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	71	Kringle.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	AAAACCTGCTATGAGGGGAAT	0.443000													27	31					0	0	0.144211	0	0
ADRA2A	150	broad.mit.edu	37	10	112839008	112839008	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:112839008G>A	uc001kzo.2	+	1	2219	c.1254G>A	c.(1252-1254)GTG>GTA	p.V418V		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	403	Extracellular (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	GGTGCTCCGTGCCACGCACGC	0.582000													47	131					0	0	0.139131	0	0
FAM24A	118670	broad.mit.edu	37	10	124672399	124672399	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr10:124672399G>T	uc001lgv.2	+	3	368	c.247G>T	c.(247-249)GAA>TAA	p.E83*		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	83						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		CCAGTGCTGTGAAGGTTGTAG	0.502000													6	133					8.12818e-05	8.53459e-05	0.029380	1	0
OR5AP2	338675	broad.mit.edu	37	11	56409127	56409127	+	Silent	SNP	G	A	A	rs146122701		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:56409127G>A	uc001njb.1	-	1	789	c.789C>T	c.(787-789)TTC>TTT	p.F263F		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	263	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						GCAAGTACATGAAGAGGATTG	0.458000													5	105					0	0	0.014758	0	0
RNASEH2C	84153	broad.mit.edu	37	11	65487785	65487785	+	Silent	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:65487785C>G	uc001ofn.2	-	2	456	c.276G>C	c.(274-276)TCG>TCC	p.S92S	RNASEH2C_uc001ofm.2_RNA	NM_032193	NP_115569	Q8TDP1	RNH2C_HUMAN	ribonuclease H2, subunit C	92					RNA catabolic process	nucleus|ribonuclease H2 complex					0						GCTTCCCCATCGACACCTTCT	0.622000													58	108					0	0	0.139131	0	0
EFEMP2	30008	broad.mit.edu	37	11	65637669	65637669	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:65637669C>T	uc001ofy.3	-	6	724	c.530G>A	c.(529-531)TGC>TAC	p.C177Y	EFEMP2_uc001ofz.2_RNA|EFEMP2_uc001oga.2_Missense_Mutation_p.C177Y	NM_016938	NP_058634	O95967	FBLN4_HUMAN	EGF-containing fibulin-like extracellular matrix	177	EGF-like 3; calcium-binding (Potential).				blood coagulation	basement membrane|membrane	calcium ion binding|extracellular matrix structural constituent|protein binding|transmembrane receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(159;0.169)		CAGGTTCACGCAGCGGTGCTG	0.667000													19	39					0	0	0.116897	0	0
PC	5091	broad.mit.edu	37	11	66618223	66618223	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:66618223C>T	uc001ojn.1	-	16	2444	c.2395G>A	c.(2395-2397)GAT>AAT	p.D799N	PC_uc001ojo.1_Missense_Mutation_p.D799N|PC_uc001ojp.1_Missense_Mutation_p.D799N|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	799	Carboxyltransferase.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GACATGGAATCAGCTGCCACA	0.637000													15	30					0	0	0.146539	0	0
SSH3	54961	broad.mit.edu	37	11	67075201	67075201	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:67075201C>T	uc001okj.2	+	7	962	c.784C>T	c.(784-786)CCT>TCT	p.P262S	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Missense_Mutation_p.P116S	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	262					regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			CAGCGCCGAGCCTGGCGGGTC	0.647000													18	38					0	0	0.055883	0	0
KCNE3	10008	broad.mit.edu	37	11	74168589	74168589	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:74168589G>A	uc001ovc.2	-	3	367	c.20C>T	c.(19-21)ACG>ATG	p.T7M	KCNE3_uc001ovd.2_Missense_Mutation_p.T7M	NM_005472	NP_005463	Q9Y6H6	KCNE3_HUMAN	potassium voltage-gated channel, Isk-related	7						integral to membrane	voltage-gated potassium channel activity			ovary(1)	1	Breast(11;2.86e-06)					CCAGGTCTCCGTTCCATTGGT	0.567000													25	97					0	0	0.099896	0	0
OR8B8	26493	broad.mit.edu	37	11	124310460	124310460	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr11:124310460G>A	uc010sal.1	-	1	522	c.522C>T	c.(520-522)GTC>GTT	p.V174V		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		TGTAGTGGTTGACAAGGTTAT	0.493000													29	25					0	0	0.125774	0	0
DDX23	9416	broad.mit.edu	37	12	49230515	49230515	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:49230515G>A	uc001rsm.2	-	10	1164	c.1073C>T	c.(1072-1074)TCT>TTT	p.S358F		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	358						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						CTTTTTCTGAGACCAATGACG	0.532000													101	239					0	0	0.139131	0	0
MLL2	8085	broad.mit.edu	37	12	49420492	49420492	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:49420492C>T	uc001rta.3	-	48	15257	c.15257G>A	c.(15256-15258)CGA>CAA	p.R5086Q		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5086					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TAGCAGTCCTCGGTGCAGGGC	0.592000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			20	43					0	0	0.043863	0	0
POU6F1	5463	broad.mit.edu	37	12	51584291	51584291	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:51584291C>T	uc001rxy.2	-	5	837	c.645G>A	c.(643-645)CGG>CGA	p.R215R	POU6F1_uc001rxz.2_Silent_p.R215R|POU6F1_uc001rya.2_Silent_p.R215R	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	215					brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTCCTGGTTCCGCAGTTCAG	0.572000													18	367					0	0	0.038395	0	0
ITGA7	3679	broad.mit.edu	37	12	56091557	56091557	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:56091557G>A	uc001shh.2	-	9	1563	c.1343C>T	c.(1342-1344)TCA>TTA	p.S448L	ITGA7_uc001shg.2_Missense_Mutation_p.S444L|ITGA7_uc010sps.1_Missense_Mutation_p.S351L|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.S331L	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	488	FG-GAP 7.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CAAGCTGCCTGACAGGGAGTA	0.607000													51	72					0	0	0.139131	0	0
SLC39A5	283375	broad.mit.edu	37	12	56630255	56630255	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:56630255C>A	uc010sqj.1	+	9	1278	c.1021C>A	c.(1021-1023)CAG>AAG	p.Q341K	SLC39A5_uc010sqk.1_Missense_Mutation_p.Q341K	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	341	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GATGGCCCTTCAGCCCCTACA	0.527000													47	89					3.50607e-19	3.8384e-19	0.139131	1	0
SLC39A5	283375	broad.mit.edu	37	12	56630958	56630958	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:56630958C>T	uc010sqj.1	+	12	1570	c.1313C>T	c.(1312-1314)TCA>TTA	p.S438L	SLC39A5_uc010sqk.1_Missense_Mutation_p.S438L	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	438	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						CTGCTCCAGTCAGGGCTGTCC	0.647000													22	90					0	0	0.111260	0	0
SLC39A5	283375	broad.mit.edu	37	12	56631000	56631000	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:56631000C>T	uc010sqj.1	+	12	1612	c.1355C>T	c.(1354-1356)TCT>TTT	p.S452F	SLC39A5_uc010sqk.1_Missense_Mutation_p.S452F	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	452	Helical; (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						AGCCTCGTGTCTGGAGCCCTG	0.642000													31	94					0	0	0.125774	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100441413	100441413	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:100441413C>T	uc001tgq.2	-	19	4205	c.3976G>A	c.(3976-3978)GAT>AAT	p.D1326N	UHRF1BP1L_uc001tgp.2_Missense_Mutation_p.D976N	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	1326										ovary(2)	2						CGGGGACTATCATCCTACAGG	0.358000													6	95					0	0	0.029380	0	0
STAB2	55576	broad.mit.edu	37	12	104083711	104083711	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:104083711G>A	uc001tjw.2	+	29	3319	c.3133G>A	c.(3133-3135)GAT>AAT	p.D1045N		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1045	Extracellular (Potential).|FAS1 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CATGGACCAGGATGAGAAAAG	0.438000													6	165					0	0	0.029380	0	0
STAB2	55576	broad.mit.edu	37	12	104126945	104126945	+	Silent	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:104126945G>C	uc001tjw.2	+	51	5631	c.5445G>C	c.(5443-5445)GTG>GTC	p.V1815V	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1815	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AGTTTCATGTGATACGAGATG	0.468000													3	176					0	0	0.115264	0	0
PPP1CC	5501	broad.mit.edu	37	12	111162495	111162495	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:111162495C>T	uc001tru.2	-	4	738	c.493G>A	c.(493-495)GTG>ATG	p.V165M		NM_002710	NP_002701	P36873	PP1G_HUMAN	protein phosphatase 1, catalytic subunit, gamma	165					cell division|glycogen metabolic process|mitotic prometaphase|triglyceride catabolic process	cleavage furrow|condensed chromosome kinetochore|cytosol|midbody|MLL5-L complex|nuclear speck|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein kinase binding|protein serine/threonine phosphatase activity			lung(2)|central_nervous_system(1)	3						TTCTCATCCACGATGGCTGCT	0.368000													6	164					0	0	0.038147	0	0
KNTC1	9735	broad.mit.edu	37	12	123087422	123087422	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:123087422G>A	uc001ucv.2	+	47	5035	c.4872G>A	c.(4870-4872)TCG>TCA	p.S1624S	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1624					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TCTTAATTTCGAAATTAATGA	0.328000													33	94					0	0	0.074837	0	0
EP400	57634	broad.mit.edu	37	12	132529427	132529427	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:132529427C>T	uc001ujn.2	+	36	6748	c.6713C>T	c.(6712-6714)CCC>CTC	p.P2238L	EP400_uc001ujl.2_Missense_Mutation_p.P2237L|EP400_uc001ujm.2_Missense_Mutation_p.P2157L	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2274					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GAAGCCACTCCCATCCCAGAG	0.607000													35	88					0	0	0.111260	0	0
FRY	10129	broad.mit.edu	37	13	32776660	32776660	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr13:32776660C>T	uc001utx.2	+	31	4510	c.4014C>T	c.(4012-4014)TTC>TTT	p.F1338F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCCCCCTCTTCTCAGGTACCA	0.463000													21	61					0	0	0.062417	0	0
PCDH9	5101	broad.mit.edu	37	13	67801613	67801613	+	Silent	SNP	T	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr13:67801613T>C	uc001vik.2	-	2	1652	c.960A>G	c.(958-960)AGA>AGG	p.R320R	PCDH9_uc001vil.2_Silent_p.R320R|PCDH9_uc010thl.1_Silent_p.R320R|PCDH9_uc001vin.3_Silent_p.R320R	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	320	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CTGTCTCCTCTCTATCTAAGG	0.478000													54	150					0	0	0.139131	0	0
MYH6	4624	broad.mit.edu	37	14	23869468	23869468	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr14:23869468C>T	uc001wjv.2	-	14	1645	c.1578G>A	c.(1576-1578)GAG>GAA	p.E526E	MYH6_uc010akp.1_Silent_p.E526E	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	526	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GAGGCACCTTCTCGATGAGGT	0.542000													36	81					0	0	0.074837	0	0
C14orf106	55320	broad.mit.edu	37	14	45693467	45693467	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr14:45693467C>G	uc001wwf.2	-	11	2782	c.2323G>C	c.(2323-2325)GAA>CAA	p.E775Q		NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	775					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						GTTTCACTTTCTTCACTTGAC	0.348000													64	134					0	0	0.139131	0	0
SOCS4	122809	broad.mit.edu	37	14	55509864	55509864	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr14:55509864G>C	uc001xbo.2	+	3	670	c.105G>C	c.(103-105)AAG>AAC	p.K35N	SOCS4_uc001xbp.2_Missense_Mutation_p.K35N	NM_199421	NP_955453	Q8WXH5	SOCS4_HUMAN	suppressor of cytokine signaling 4	35					intracellular signal transduction|negative regulation of signal transduction|regulation of growth					ovary(1)|kidney(1)	2						GGAGTGGAAAGAAGTTATCTT	0.383000													31	73					0	0	0.054565	0	0
MAP3K9	4293	broad.mit.edu	37	14	71267429	71267429	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr14:71267429C>T	uc001xmm.2	-	2	775	c.775G>A	c.(775-777)GAG>AAG	p.E259K	MAP3K9_uc001xml.2_Missense_Mutation_p.E259K	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	259	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ACAATTGCCTCATCATGTAAG	0.498000													60	112					0	0	0.139131	0	0
RASGRF1	5923	broad.mit.edu	37	15	79277490	79277490	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:79277490C>T	uc002beq.2	-	24	3696	c.3321G>A	c.(3319-3321)GTG>GTA	p.V1107V	RASGRF1_uc002bep.2_Silent_p.V1091V|RASGRF1_uc010blm.1_Silent_p.V1016V|RASGRF1_uc002ber.3_Silent_p.V1091V|RASGRF1_uc002beo.2_Silent_p.V323V	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	1109	Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CGATGGCGCTCACCCTGGCGT	0.418000													7	157					0	0	0.029380	0	0
FSD2	123722	broad.mit.edu	37	15	83455755	83455755	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:83455755C>T	uc002bjd.2	-	2	555	c.388G>A	c.(388-390)GAG>AAG	p.E130K	FSD2_uc010uol.1_Missense_Mutation_p.E130K|FSD2_uc010uom.1_Missense_Mutation_p.E130K	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	130										central_nervous_system(1)	1						CCCAGGTCCTCGGCCTCCGCT	0.587000													5	115					0	0	0.014758	0	0
LYSMD4	145748	broad.mit.edu	37	15	100269463	100269463	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:100269463C>T	uc002bvk.2	-	3	819	c.756G>A	c.(754-756)TTG>TTA	p.L252L	LYSMD4_uc002bvj.1_Intron|LYSMD4_uc010bou.1_Intron|LYSMD4_uc002bvl.2_Silent_p.L253L|LYSMD4_uc002bvm.2_3'UTR|LYSMD4_uc010bov.2_Silent_p.L252L			Q5XG99	LYSM4_HUMAN	SubName: Full=cDNA FLJ77040, highly similar to Homo sapiens LysM, putative peptidoglycan-binding, domain containing 4, mRNA; SubName: Full=LysM, putative peptidoglycan-binding, domain containing 4, isoform CRA_c;	252	Cytoplasmic (Potential).				cell wall macromolecule catabolic process	integral to membrane					0	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			CAGTTGTGTTCAAGCTATTAG	0.478000													76	137					0	0	0.139131	0	0
CHSY1	22856	broad.mit.edu	37	15	101719133	101719133	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:101719133C>G	uc002bwt.1	-	4	1352	c.869G>C	c.(868-870)AGA>ACA	p.R290T	CHSY1_uc010usd.1_Missense_Mutation_p.R18T	NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	290	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ATGGAGATCTCTAATGTACCC	0.398000													30	67					0	0	0.045705	0	0
Unknown	0	broad.mit.edu	37	15	102294640	102294640	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:102294640C>T	uc010usj.1	+	5	527	c.468C>T	c.(466-468)TTC>TTT	p.F156F	uc002bxo.2_5'Flank|uc002bxq.2_5'Flank|uc002bxr.2_5'Flank|uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank|uc002bys.2_5'Flank|uc002byv.2_5'Flank|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GATGCTGCTTCTCAGAGCTGC	0.592000													8	16					0	0	0.058154	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24988547	24988547	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr16:24988547C>T	uc002dnb.2	-	3	280	c.187G>A	c.(187-189)GAG>AAG	p.E63K	ARHGAP17_uc002dnc.2_Missense_Mutation_p.E63K|ARHGAP17_uc010vcf.1_Intron|ARHGAP17_uc002dng.1_Missense_Mutation_p.E63K	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	63	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		TGTCTCCTCTCGGCATCGGTG	0.542000													16	58					0	0	0.146539	0	0
BBS2	583	broad.mit.edu	37	16	56531748	56531748	+	Silent	SNP	G	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr16:56531748G>T	uc002ejd.2	-	14	1938	c.1704C>A	c.(1702-1704)ATC>ATA	p.I568I		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	568					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						CCATTGACTGGATGATATCAC	0.373000									Bardet-Biedl_syndrome				51	88					2.01872e-29	2.22059e-29	0.139131	1	0
CES3	23491	broad.mit.edu	37	16	66995225	66995225	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr16:66995225G>A	uc002eqt.2	+	1	88	c.15G>A	c.(13-15)GTG>GTA	p.V5V	CES3_uc010cdz.2_Silent_p.V5V|CES3_uc010cea.2_RNA	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	5						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		AGAGAGCAGTGAGAGTGGAGT	0.572000											OREG0023869	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	37					0	0	0.021553	0	0
COG4	25839	broad.mit.edu	37	16	70551570	70551570	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr16:70551570C>G	uc002ezc.2	-	3	339	c.328G>C	c.(328-330)GAG>CAG	p.E110Q	COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Missense_Mutation_p.E110Q|COG4_uc002eze.2_5'UTR	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	106	Interacts with STX5.				Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				GACACATTCTCAGCCAGGTTG	0.368000													3	108					0	0	0.115264	0	0
SMYD4	114826	broad.mit.edu	37	17	1684631	1684631	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:1684631C>A	uc002ftm.3	-	11	2532	c.2364G>T	c.(2362-2364)ATG>ATT	p.M788I		NM_052928	NP_443160	Q8IYR2	SMYD4_HUMAN	SET and MYND domain containing 4	788							zinc ion binding			skin(3)|kidney(2)	5						AACAGGATTTCATCTTCTGGA	0.527000													45	84					2.00842e-17	2.18842e-17	0.117977	1	0
OR3A2	4995	broad.mit.edu	37	17	3181791	3181791	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:3181791G>A	uc002fvg.2	-	1	478	c.439C>T	c.(439-441)CAG>TAG	p.Q147*		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TGGACTGTCTGACTCATGCGG	0.612000													6	213					0	0	0.038147	0	0
ITGAE	3682	broad.mit.edu	37	17	3661017	3661017	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:3661017C>T	uc002fwo.3	-	9	1102	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	335	VWFA.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		GCAAAGCGCTCAACACCCTGC	0.577000													197	410					0	0	0.139131	0	0
ACAP1	9744	broad.mit.edu	37	17	7252323	7252323	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:7252323C>T	uc002ggd.2	+	18	1894	c.1688C>T	c.(1687-1689)TCT>TTT	p.S563F	KCTD11_uc002gge.3_5'Flank	NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	563	Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						GAGCCCCCCTCTGAGGACCTG	0.592000													55	155					0	0	0.139131	0	0
ACAP1	9744	broad.mit.edu	37	17	7252471	7252471	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:7252471C>G	uc002ggd.2	+	18	2042	c.1836C>G	c.(1834-1836)ATC>ATG	p.I612M	KCTD11_uc002gge.3_5'Flank	NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	612	Required for interaction with GULP1.|ANK 1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						CACCGCTGATCCAGGCCACAG	0.602000													27	64					0	0	0.099896	0	0
DNAH2	146754	broad.mit.edu	37	17	7734542	7734542	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:7734542C>T	uc002giu.1	+	79	12383	c.12369C>T	c.(12367-12369)ATC>ATT	p.I4123I	DNAH2_uc010cnm.1_Silent_p.I1061I	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	4123	TPR 5.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCTCTCAGATCACTGAGGCAC	0.537000													9	359					0	0	0.047766	0	0
MYH13	8735	broad.mit.edu	37	17	10248901	10248901	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:10248901G>A	uc002gmk.1	-	14	1386	c.1296C>T	c.(1294-1296)GCC>GCT	p.A432A	MYH13_uc010vvf.1_Silent_p.A107A	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	432	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TCTCGTAGACGGCTTTGGCCA	0.507000													65	174					0	0	0.139131	0	0
NCOR1	9611	broad.mit.edu	37	17	15976884	15976884	+	Splice_Site	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:15976884C>T	uc002gpo.2	-	28	3911	c.3671_splice	c.e28-1	p.N1224_splice	NCOR1_uc002gpn.2_Splice_Site_p.N1240_splice|NCOR1_uc002gpp.1_Splice_Site_p.N1131_splice|NCOR1_uc010vwb.1_Intron|NCOR1_uc010coy.2_Splice_Site_p.N132_splice|NCOR1_uc010vwc.1_Splice_Site_p.N35_splice	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1						cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTCTTAATATCTACAGAATAC	0.348000													39	55					0	0	0.086207	0	0
NT5M	56953	broad.mit.edu	37	17	17248182	17248182	+	Silent	SNP	C	T	T	rs138942800	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:17248182C>T	uc002grf.2	+	4	689	c.504C>T	c.(502-504)GTC>GTT	p.V168V	NT5M_uc002gre.2_Silent_p.V168V|NT5M_uc002grg.2_Silent_p.V168V	NM_020201	NP_064586	Q9NPB1	NT5M_HUMAN	5',3'-nucleotidase, mitochondrial precursor	168					DNA replication|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	5'-nucleotidase activity|metal ion binding|nucleotide binding				0						AGACCGTGGTCTCTGCTGACC	0.602000													5	183					0	0	0.014758	0	0
NF1	4763	broad.mit.edu	37	17	29553644	29553644	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:29553644C>T	uc002hgg.2	+	18	2526	c.2193C>T	c.(2191-2193)CTC>CTT	p.L731L	NF1_uc002hgh.2_Silent_p.L731L|NF1_uc010csn.1_Silent_p.L591L|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	731					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGCATAACCTCTTGCCCAACT	0.458000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			79	155					0	0	0.139131	0	0
NF1	4763	broad.mit.edu	37	17	29554588	29554588	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:29554588C>G	uc002hgg.2	+	20	2706	c.2373C>G	c.(2371-2373)ATC>ATG	p.I791M	NF1_uc002hgh.2_Missense_Mutation_p.I791M|NF1_uc010csn.1_Missense_Mutation_p.I651M|NF1_uc002hgi.1_Translation_Start_Site	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	791					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CAAAGCTAATCCTTAACTATC	0.363000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			27	69					0	0	0.116897	0	0
NF1	4763	broad.mit.edu	37	17	29556206	29556206	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:29556206C>A	uc002hgg.2	+	21	2906	c.2573C>A	c.(2572-2574)TCT>TAT	p.S858Y	NF1_uc002hgh.2_Missense_Mutation_p.S858Y|NF1_uc010csn.1_Missense_Mutation_p.S718Y|NF1_uc002hgi.1_Translation_Start_Site	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	858					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGAAGCAATTCTGGCCTGGCA	0.507000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			21	54					8.34094e-07	8.83833e-07	0.049695	1	0
C17orf104	284071	broad.mit.edu	37	17	42745401	42745401	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:42745401G>A	uc010czv.2	+	5	2122	c.2122G>A	c.(2122-2124)GAC>AAC	p.D708N	C17orf104_uc002igy.1_Missense_Mutation_p.D542N|C17orf104_uc002igz.3_Missense_Mutation_p.D542N|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Missense_Mutation_p.D542N	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	708										central_nervous_system(1)	1						GGATTCCTATGACTTACTTTC	0.373000													3	53					0	0	0.014758	0	0
CACNA1G	8913	broad.mit.edu	37	17	48677083	48677083	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:48677083C>T	uc002irk.1	+	17	3925	c.3553C>T	c.(3553-3555)CGC>TGC	p.R1185C	CACNA1G_uc002iri.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irj.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irl.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irm.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irn.1_Missense_Mutation_p.R1162C|CACNA1G_uc002iro.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irp.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irq.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irr.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irs.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irt.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irv.1_Missense_Mutation_p.R1185C|CACNA1G_uc002irw.1_Missense_Mutation_p.R1162C|CACNA1G_uc002iru.1_Missense_Mutation_p.R1162C|CACNA1G_uc002irx.1_Missense_Mutation_p.R1098C|CACNA1G_uc002iry.1_Missense_Mutation_p.R1098C|CACNA1G_uc002irz.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isa.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isb.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isc.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isd.1_Missense_Mutation_p.R1098C|CACNA1G_uc002ise.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isf.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isg.1_Missense_Mutation_p.R1098C|CACNA1G_uc002ish.1_Missense_Mutation_p.R1098C|CACNA1G_uc002isi.1_Missense_Mutation_p.R1075C|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1185	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	AGGGCTGCATCGCACTGCCAG	0.682000													10	19					0	0	0.069234	0	0
TLK2	11011	broad.mit.edu	37	17	60642437	60642437	+	Nonsense_Mutation	SNP	C	T	T	rs138247472		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:60642437C>T	uc010ddp.2	+	11	1175	c.907C>T	c.(907-909)CGA>TGA	p.R303*	TLK2_uc002izx.3_Nonsense_Mutation_p.R151*|TLK2_uc002izz.3_Nonsense_Mutation_p.R303*|TLK2_uc002jaa.3_Nonsense_Mutation_p.R271*|TLK2_uc010wpd.1_Nonsense_Mutation_p.R271*	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	303					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						TACTACTGTCCGACACGGAGC	0.403000													4	194					0	0	0.014758	0	0
SMCHD1	23347	broad.mit.edu	37	18	2775770	2775770	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr18:2775770G>A	uc002klm.3	+	42	5403	c.5214G>A	c.(5212-5214)GCG>GCA	p.A1738A	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1738					chromosome organization		ATP binding				0						ATAGAGCTGCGATGGTTATTT	0.373000													4	103					0	0	0.014758	0	0
ZNF532	55205	broad.mit.edu	37	18	56587446	56587446	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr18:56587446G>A	uc002lho.2	+	4	2474	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	ZNF532_uc002lhp.2_Missense_Mutation_p.E641K|ZNF532_uc010xeg.1_Missense_Mutation_p.E641K|ZNF532_uc002lhr.2_Missense_Mutation_p.E641K|ZNF532_uc002lhs.2_Missense_Mutation_p.E641K	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	643					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CGTGCGCATCGAAGTAACGTG	0.517000													32	75					0	0	0.045705	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390278	61390278	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr18:61390278C>G	uc002ljk.3	+	9	886	c.824C>G	c.(823-825)TCT>TGT	p.S275C	SERPINB11_uc010xes.1_Missense_Mutation_p.S100C|SERPINB11_uc010dqd.2_Missense_Mutation_p.S161C|SERPINB11_uc002ljj.3_Missense_Mutation_p.S161C|SERPINB11_uc010dqe.2_Missense_Mutation_p.S74C|SERPINB11_uc010dqf.2_Missense_Mutation_p.S73C	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	275					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				ACAAGCTCTTCTAACATGATG	0.423000													9	14					0	0	0.105934	0	0
GADD45B	4616	broad.mit.edu	37	19	2476585	2476585	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:2476585C>T	uc002lwb.1	+	2	325	c.103C>T	c.(103-105)CGC>TGC	p.R35C	GADD45B_uc010dtd.1_Missense_Mutation_p.R20C|GADD45B_uc002lwc.1_Missense_Mutation_p.R20C	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	35					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCCAGGATCGCCTCACAGT	0.667000											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	46					0	0	0.099896	0	0
GPR108	56927	broad.mit.edu	37	19	6732334	6732334	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:6732334G>A	uc002mfp.2	-	12	1111	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	GPR108_uc010duv.2_5'Flank|GPR108_uc002mfn.2_Silent_p.F26F|GPR108_uc002mfo.3_Silent_p.F113F|GPR108_uc010duw.2_RNA	NM_001080452	NP_001073921	Q9NPR9	GP108_HUMAN	G protein-coupled receptor 108 isoform 1	355	Helical; Name=3; (Potential).					integral to membrane					0						CGTACTTGATGAAGGCCCAGC	0.622000													45	97					0	0	0.111260	0	0
MUC16	94025	broad.mit.edu	37	19	9057140	9057140	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:9057140C>A	uc002mkp.2	-	3	30510	c.30306G>T	c.(30304-30306)ATG>ATT	p.M10102I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10104	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTCACTGCCATGCTTGAAG	0.468000													4	132					0.000602214	0.000626628	0.014758	1	0
PDE4A	5141	broad.mit.edu	37	19	10574494	10574494	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:10574494C>T	uc002moj.2	+	14	1877	c.1769C>T	c.(1768-1770)GCC>GTC	p.A590V	PDE4A_uc002mok.2_Missense_Mutation_p.A564V|PDE4A_uc002mol.2_Missense_Mutation_p.A529V|PDE4A_uc002mom.2_Missense_Mutation_p.A351V|PDE4A_uc002mon.2_Missense_Mutation_p.A45V|PDE4A_uc002moo.2_Missense_Mutation_p.A256V	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	590	Catalytic.				signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	GTGCACTGTGCCGACCTCAGC	0.617000													4	112					0	0	0.009096	0	0
LYL1	4066	broad.mit.edu	37	19	13211489	13211489	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:13211489C>G	uc002mwi.2	-	3	770	c.409G>C	c.(409-411)GAG>CAG	p.E137Q		NM_005583	NP_005574	P12980	LYL1_HUMAN	lymphoblastic leukemia derived sequence 1	137					B cell differentiation|blood vessel maturation|definitive hemopoiesis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)			AGGTCCAGCTCACAGTGGCTT	0.562000			T	TRB@	T-ALL								61	251					0	0	0.139131	0	0
PKN1	5585	broad.mit.edu	37	19	14554355	14554355	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:14554355G>A	uc002myp.2	+	3	564	c.396G>A	c.(394-396)GAG>GAA	p.E132E	PKN1_uc002myq.2_Silent_p.E138E	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	132	REM 2.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CGGGCCTGGAGAAGCAGTTGG	0.647000													11	20					0	0	0.080935	0	0
GLT25D1	79709	broad.mit.edu	37	19	17678289	17678289	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:17678289C>T	uc002nhc.1	+	4	576	c.564C>T	c.(562-564)GTC>GTT	p.V188V	GLT25D1_uc010eax.1_5'Flank	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	188					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						AGACGGTGGTCGCCCCCATGC	0.582000													27	46					0	0	0.099896	0	0
ELL	8178	broad.mit.edu	37	19	18557290	18557290	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:18557290C>T	uc002njh.2	-	10	1605	c.1533G>A	c.(1531-1533)CTG>CTA	p.L511L	ELL_uc010ebq.2_Silent_p.L454L|ELL_uc002njg.2_Silent_p.L378L	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	511					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		CTGCGTACTTCCTGAAACAGG	0.637000			T	MLL	AL								4	16					0	0	0.014758	0	0
SCGBL	284402	broad.mit.edu	37	19	35085427	35085427	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:35085427C>T	uc002nvn.2	-	1	64	c.42G>A	c.(40-42)CTG>CTA	p.L14L		NM_001025591	NP_001020762	Q4G0G5	SCGBL_HUMAN	secretoglobin-like precursor	14						extracellular region	binding				0						CGCTGCAGATCAGAGCCAGCA	0.597000													26	83					0	0	0.099896	0	0
HKR1	284459	broad.mit.edu	37	19	37853929	37853929	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:37853929A>G	uc002ogb.2	+	6	1501	c.1232A>G	c.(1231-1233)AAG>AGG	p.K411R	HKR1_uc002ofx.2_Missense_Mutation_p.K127R|HKR1_uc002ofy.2_Missense_Mutation_p.K127R|HKR1_uc002oga.2_Missense_Mutation_p.K393R|HKR1_uc010xto.1_Missense_Mutation_p.K393R|HKR1_uc002ogc.2_Missense_Mutation_p.K392R|HKR1_uc010xtp.1_Missense_Mutation_p.K350R|HKR1_uc002ogd.2_Missense_Mutation_p.K350R	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	411					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGGAGAGAAGCCTTACATT	0.512000													9	136					0	0	0.047766	0	0
RTN2	6253	broad.mit.edu	37	19	45997610	45997610	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:45997610C>A	uc002pcb.2	-	4	856	c.628G>T	c.(628-630)GGC>TGC	p.G210C	RTN2_uc002pcc.2_Missense_Mutation_p.G210C|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	210						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GTCCCAGAGCCCGGACTGAGC	0.607000													31	66					2.47511e-08	2.63479e-08	0.134883	1	0
EML2	24139	broad.mit.edu	37	19	46116846	46116846	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:46116846C>A	uc002pcn.2	-	18	1812	c.1777G>T	c.(1777-1779)GAC>TAC	p.D593Y	EML2_uc002pco.2_RNA|EML2_uc002pcp.2_Missense_Mutation_p.D477Y|EML2_uc010xxl.1_Missense_Mutation_p.D740Y|EML2_uc010xxm.1_Missense_Mutation_p.D794Y	NM_012155	NP_036287	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like	593	WD 10.				sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		TTGCCAAAGTCATCAGCTGAA	0.587000													43	92					9.85913e-13	1.06423e-12	0.111260	1	0
ZC3H4	23211	broad.mit.edu	37	19	47588364	47588364	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:47588364C>T	uc002pga.3	-	8	1094	c.1056G>A	c.(1054-1056)ATG>ATA	p.M352I	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	352	Gly-rich.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CGCCCTTGTTCATCCCTCCTC	0.602000													6	318					0	0	0.029380	0	0
FGF21	26291	broad.mit.edu	37	19	49259545	49259545	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:49259545C>T	uc002pkn.1	+	2	624	c.52C>T	c.(52-54)CTG>TTG	p.L18L	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkl.1_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.L18L	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	18					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GGTTTCTGTGCTGGCTGGTCT	0.627000													47	68					0	0	0.139131	0	0
PNKP	11284	broad.mit.edu	37	19	50369688	50369688	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:50369688C>G	uc002pqh.2	-	2	218	c.166G>C	c.(166-168)GAT>CAT	p.D56H	PNKP_uc002pqg.2_5'UTR|PNKP_uc002pqi.2_Missense_Mutation_p.D17H|PNKP_uc002pqj.2_Missense_Mutation_p.D56H|PNKP_uc010enm.2_Missense_Mutation_p.D56H|PNKP_uc002pqk.2_Missense_Mutation_p.D56H	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	56					DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		GTCTCAGGATCTGCGACCAGC	0.572000								Other_BER_factors					8	242					0	0	0.038147	0	0
MYH14	79784	broad.mit.edu	37	19	50747551	50747551	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:50747551G>C	uc002prr.1	+	10	1190	c.1143G>C	c.(1141-1143)AAG>AAC	p.K381N	MYH14_uc010enu.1_Missense_Mutation_p.K389N|MYH14_uc002prq.1_Missense_Mutation_p.K389N	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	381	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		TTGCCTTGAAGAGAGAACGGA	0.627000													13	44					0	0	0.119110	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52714601	52714601	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:52714601C>T	uc002pyp.2	+	4	518	c.359C>T	c.(358-360)TCG>TTG	p.S120L	PPP2R1A_uc010ydk.1_Missense_Mutation_p.S65L|PPP2R1A_uc010epm.1_Missense_Mutation_p.S160L|PPP2R1A_uc002pyq.2_5'UTR	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	120	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 3.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CACGAGCACTCGCCCTCTGAC	0.662000			Mis		clear cell ovarian carcinoma								45	95					0	0	0.139131	0	0
ZNF160	90338	broad.mit.edu	37	19	53578391	53578391	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:53578391C>T	uc010eqk.2	-	5	477	c.61G>A	c.(61-63)GAG>AAG	p.E21K	ZNF160_uc002qaq.3_Missense_Mutation_p.E21K|ZNF160_uc002qar.3_Missense_Mutation_p.E21K|ZNF160_uc002qas.3_Missense_Mutation_p.E21K	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	21	KRAB.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		CATTTCCACTCCTCCTGAGAG	0.453000													5	154					0	0	0.029380	0	0
LILRA6	79168	broad.mit.edu	37	19	54745664	54745664	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr19:54745664C>G	uc002qeu.1	-	4	570	c.446G>C	c.(445-447)GGA>GCA	p.G149A	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Missense_Mutation_p.G149A|LILRA6_uc002qek.1_Missense_Mutation_p.G149A|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.G149A|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.G149A|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Missense_Mutation_p.G149A|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.G149A|LILRA6_uc010yep.1_Missense_Mutation_p.G149A|LILRA6_uc010yeq.1_Missense_Mutation_p.G149A|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Missense_Mutation_p.G10A	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	149	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATGGTGATATCCCTTCTGTGA	0.582000													4	93					0	0	0.014758	0	0
SH3YL1	26751	broad.mit.edu	37	2	231066	231066	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:231066C>G	uc002qvx.2	-	7	743	c.659G>C	c.(658-660)CGA>CCA	p.R220P	SH3YL1_uc002qvy.2_Missense_Mutation_p.R220P|SH3YL1_uc002qvz.2_RNA|SH3YL1_uc002qwa.2_RNA|SH3YL1_uc010ewe.2_Missense_Mutation_p.R124P|SH3YL1_uc002qvu.2_RNA|SH3YL1_uc002qvv.2_Missense_Mutation_p.R124P|SH3YL1_uc002qvw.2_RNA	NM_015677	NP_056492	Q96HL8	SH3Y1_HUMAN	SH3 domain containing, Ysc84-like 1 isoform 1	220										ovary(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.034)		all cancers(51;0.000647)|Epithelial(75;0.0043)|OV - Ovarian serous cystadenocarcinoma(76;0.00871)|GBM - Glioblastoma multiforme(21;0.148)		TGCATTGATTCGTTGTCCTTC	0.383000													3	140					0	0	0.009096	0	0
MYT1L	23040	broad.mit.edu	37	2	1926313	1926313	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:1926313C>T	uc002qxe.2	-	10	2055	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N	MYT1L_uc002qxd.2_Missense_Mutation_p.D410N|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	410					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GTGGTATCGTCGTCCCGCTCA	0.582000													30	55					0	0	0.134883	0	0
RRM2	6241	broad.mit.edu	37	2	10263000	10263000	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:10263000C>T	uc002rah.2	+	1	266	c.75C>T	c.(73-75)CTC>CTT	p.L25L		NM_001034	NP_001025	P31350	RIR2_HUMAN	ribonucleotide reductase M2 polypeptide isoform	25					deoxyribonucleoside diphosphate metabolic process|deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol	ribonucleoside-diphosphate reductase activity|transition metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)|OV - Ovarian serous cystadenocarcinoma(76;0.221)		TGAAGGGGCTCAGCTTGGTCG	0.692000													5	1					0	0	0.029380	0	0
HEATR5B	54497	broad.mit.edu	37	2	37295890	37295890	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:37295890C>T	uc002rpp.1	-	8	1207	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	371							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TGGGCTTTTTCACCTAGCAAA	0.448000													37	90					0	0	0.092188	0	0
QPCT	25797	broad.mit.edu	37	2	37596909	37596909	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:37596909G>A	uc002rqg.2	+	5	927	c.805G>A	c.(805-807)GAA>AAA	p.E269K	QPCT_uc002rqh.2_Missense_Mutation_p.E220K	NM_012413	NP_036545	Q16769	QPCT_HUMAN	glutaminyl-peptide cyclotransferase precursor	269					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	extracellular region	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|zinc ion binding			central_nervous_system(1)	1		Ovarian(717;0.051)|all_hematologic(82;0.21)				CAGGTGGTTCGAAAGACTTCA	0.328000													60	97					0	0	0.139131	0	0
NRXN1	9378	broad.mit.edu	37	2	51255079	51255079	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:51255079G>A	uc010fbq.2	-	2	1810	c.333C>T	c.(331-333)GAC>GAT	p.D111D	NRXN1_uc002rxe.3_Silent_p.D111D|NRXN1_uc002rxd.1_Silent_p.D111D	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	174	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GCCAGGCGCCGTCGTTAACCG	0.662000													15	42					0	0	0.146539	0	0
CCDC85A	114800	broad.mit.edu	37	2	56603037	56603038	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:56603037_56603038CC>TT	uc002rzn.2	+	5	2041_2042	c.1539_1540CC>TT	c.(1537-1542)TCCCAG>TCTTAG	p.Q514*		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	514										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CCACACCTTCCCAGCAGCCTGA	0.480000													22	65					0	0	0.115264	0	0
POLR1A	25885	broad.mit.edu	37	2	86258468	86258468	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:86258468C>T	uc002sqs.2	-	30	4942	c.4563G>A	c.(4561-4563)GAG>GAA	p.E1521E	POLR1A_uc010ytb.1_Silent_p.E887E	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1521					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						ACCACAGGCTCTCCTCGGTGT	0.657000													67	127					0	0	0.139131	0	0
GPAT2	150763	broad.mit.edu	37	2	96690050	96690050	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:96690050G>A	uc002svf.2	-	16	1928	c.1705C>T	c.(1705-1707)CCG>TCG	p.P569S	GPAT2_uc002svd.2_Missense_Mutation_p.P388S|GPAT2_uc002sve.2_Missense_Mutation_p.P371S|GPAT2_uc002svg.2_Missense_Mutation_p.P448S|GPAT2_uc010yuh.1_Missense_Mutation_p.P498S|GPAT2_uc002svh.2_Missense_Mutation_p.P569S	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	569					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						CCCTGGGGCGGCACTCTGCCT	0.642000													3	17					0	0	0.115264	0	0
AFF3	3899	broad.mit.edu	37	2	100185373	100185373	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:100185373G>A	uc002tag.2	-	18	3159	c.2923C>T	c.(2923-2925)CGC>TGC	p.R975C	AFF3_uc002taf.2_Missense_Mutation_p.R1000C	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	975					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TCGGCACTGCGAGGCCTACAA	0.368000													48	124					0	0	0.139131	0	0
NPAS2	4862	broad.mit.edu	37	2	101611992	101611992	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:101611992G>A	uc002tap.1	+	21	2709	c.2423G>A	c.(2422-2424)CGA>CAA	p.R808Q	NPAS2_uc010yvt.1_Missense_Mutation_p.R873Q|NPAS2_uc010fit.1_3'UTR	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	808					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CGTCCTCCCCGAAGGGTCAGC	0.617000													11	50					0	0	0.069234	0	0
NEB	4703	broad.mit.edu	37	2	152359890	152359890	+	Silent	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:152359890G>C	uc010fnx.2	-	138	18896	c.18705C>G	c.(18703-18705)GTC>GTG	p.V6235V	NEB_uc002txr.2_Silent_p.V2658V|RIF1_uc002txp.2_Intron|NEB_uc002txq.2_Silent_p.V21V|NEB_uc010zca.1_Silent_p.V66V|NEB_uc010zcb.1_Silent_p.V66V|NEB_uc002txt.3_Silent_p.V740V	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6235	Nebulin 171.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GATTGCGTTTGACTCTCTCAA	0.328000													21	67					0	0	0.091800	0	0
BAZ2B	29994	broad.mit.edu	37	2	160289381	160289381	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:160289381G>A	uc002uao.2	-	9	2139	c.1787C>T	c.(1786-1788)TCA>TTA	p.S596L	BAZ2B_uc002uap.2_Missense_Mutation_p.S594L|BAZ2B_uc002uas.1_Missense_Mutation_p.S533L|BAZ2B_uc002uaq.1_Missense_Mutation_p.S524L|BAZ2B_uc002uar.1_Missense_Mutation_p.S169L	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	596	Asp/Glu-rich (acidic).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GGGAATGTCTGAATCTGTTCC	0.269000													5	169					0	0	0.014758	0	0
LRP2	4036	broad.mit.edu	37	2	170022443	170022443	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:170022443G>C	uc002ues.2	-	62	11970	c.11757C>G	c.(11755-11757)CAC>CAG	p.H3919Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3919	LDL-receptor class A 35.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTTGCTTACAGTGCTCCTCTG	0.453000													49	162					0	0	0.139131	0	0
KLHL23	151230	broad.mit.edu	37	2	170591579	170591579	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:170591579C>G	uc002ufh.1	+	4	393	c.55C>G	c.(55-57)CCA>GCA	p.P19A	KLHL23_uc002ufi.1_Missense_Mutation_p.P19A	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	19											0						TTCAACACATCCAGTGGATTT	0.338000													21	185					0	0	0.062417	0	0
NFE2L2	4780	broad.mit.edu	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:178098799T>A	uc002ulh.3	-	2	801	c.246A>T	c.(244-246)GAA>GAT	p.E82D	NFE2L2_uc002ulg.3_Missense_Mutation_p.E66D|NFE2L2_uc010zfa.1_Missense_Mutation_p.E66D|NFE2L2_uc002uli.3_Missense_Mutation_p.E66D|NFE2L2_uc010fra.2_Missense_Mutation_p.E66D|NFE2L2_uc010frb.2_Missense_Mutation_p.E66D	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	82					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TTGGGAGAAATTCACCTGTCT	0.433000			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			49	76					0	0	0.139131	0	0
ITGA4	3676	broad.mit.edu	37	2	182323022	182323022	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:182323022G>C	uc002unu.2	+	2	1060	c.297G>C	c.(295-297)CAG>CAC	p.Q99H	ITGA4_uc002unt.2_Missense_Mutation_p.Q99H|ITGA4_uc010zfl.1_Missense_Mutation_p.Q99H	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	99	FG-GAP 1.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ATCCCGGCCAGACGTGCGAAC	0.602000													9	22					0	0	0.047766	0	0
SGOL2	151246	broad.mit.edu	37	2	201440108	201440108	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:201440108G>C	uc002uvw.2	+	8	3819	c.3706G>C	c.(3706-3708)GAA>CAA	p.E1236Q	SGOL2_uc010zhd.1_Missense_Mutation_p.E1236Q|SGOL2_uc010zhe.1_Missense_Mutation_p.Q1233H	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1236					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						AAATAAGTCAGAAGATCTATC	0.333000													32	85					0	0	0.059317	0	0
ACSL3	2181	broad.mit.edu	37	2	223789234	223789234	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:223789234C>T	uc002vni.2	+	11	1664	c.1213C>T	c.(1213-1215)CAA>TAA	p.Q405*	ACSL3_uc002vnj.2_Nonsense_Mutation_p.Q405*	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	405	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	GAGTAGTTTTCAACGTAATCT	0.318000			T	ETV1	prostate								12	50					0	0	0.132662	0	0
IQCA1	79781	broad.mit.edu	37	2	237272528	237272528	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:237272528G>C	uc002vvz.1	-	15	1946	c.1764C>G	c.(1762-1764)ATC>ATG	p.I588M	IQCA1_uc002vwb.2_Missense_Mutation_p.I596M|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.I547M	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	588							ATP binding			ovary(1)	1						TTTCGGTGCAGATGGCATGGA	0.507000													51	105					0	0	0.139131	0	0
CST2	1470	broad.mit.edu	37	20	23807192	23807192	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:23807192C>T	uc002wtq.1	-	1	121	c.106G>A	c.(106-108)GAT>AAT	p.D36N		NM_001322	NP_001313	P09228	CYTT_HUMAN	cystatin SA precursor	36						extracellular region	cysteine-type endopeptidase inhibitor activity				0						AGGTCTGCATCATAGATGCCA	0.597000													27	34					0	0	0.116897	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													4	164					0	0	0.029380	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													4	163					0	0	0.058154	0	0
CHD6	84181	broad.mit.edu	37	20	40084593	40084593	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:40084593C>T	uc002xka.1	-	19	3034	c.2856G>A	c.(2854-2856)GTG>GTA	p.V952V	CHD6_uc002xkd.2_Silent_p.V930V	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	952	Helicase C-terminal.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GTAGGTCCTCCACCTCCATTT	0.458000													94	239					0	0	0.139131	0	0
ZBP1	81030	broad.mit.edu	37	20	56188280	56188280	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:56188280G>A	uc002xyo.2	-	5	890	c.609C>T	c.(607-609)TCC>TCT	p.S203S	ZBP1_uc010gjm.2_Silent_p.S202S|ZBP1_uc002xyp.2_Silent_p.S128S|ZBP1_uc010zzn.1_Silent_p.S203S	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	203	RIP homotypic interaction motif (RHIM) 1.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			GGATGGCTTCGGAGTTTGCAA	0.507000													5	146					0	0	0.014758	0	0
MYT1	4661	broad.mit.edu	37	20	62853251	62853251	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:62853251G>C	uc002yii.2	+	14	2611	c.2247G>C	c.(2245-2247)GAG>GAC	p.E749D	MYT1_uc002yih.2_Missense_Mutation_p.E451D|MYT1_uc002yij.2_Missense_Mutation_p.E408D	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	749					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					TGCAGTCAGAGCCAGCAGCCC	0.567000													7	52					0	0	0.038147	0	0
NCAM2	4685	broad.mit.edu	37	21	22746206	22746206	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr21:22746206C>T	uc002yld.1	+	9	1317	c.1068C>T	c.(1066-1068)GTC>GTT	p.V356V	NCAM2_uc011acb.1_Silent_p.V214V|NCAM2_uc011acc.1_Silent_p.V381V	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	356	Ig-like C2-type 4.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GTATCGAAGTCAAAGGGCAGC	0.423000													26	116					0	0	0.125774	0	0
LCA5L	150082	broad.mit.edu	37	21	40795190	40795190	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr21:40795190C>G	uc002yxu.2	-	5	862	c.549G>C	c.(547-549)TTG>TTC	p.L183F	LCA5L_uc002yxv.2_Missense_Mutation_p.L183F|LCA5L_uc002yxw.1_Missense_Mutation_p.L183F|LCA5L_uc002yxx.1_Missense_Mutation_p.L45F|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	183	Potential.										0		Prostate(19;1.2e-06)				CTATAGCTTTCAAATGCCTAA	0.289000													28	52					0	0	0.099896	0	0
TFF1	7031	broad.mit.edu	37	21	43786545	43786545	+	Silent	SNP	G	A	A	rs142874600		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr21:43786545G>A	uc002zax.1	-	1	100	c.60C>T	c.(58-60)CTC>CTT	p.L20L		NM_003225	NP_003216	P04155	TFF1_HUMAN	trefoil factor 1 precursor	20					carbohydrate metabolic process|response to estradiol stimulus		growth factor activity				0						CCAGGGTGCCGAGGGCCAGCA	0.632000													4	60					0	0	0.014758	0	0
UBASH3A	53347	broad.mit.edu	37	21	43867194	43867194	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr21:43867194G>A	uc002zbe.2	+	15	1912	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K	UBASH3A_uc002zbf.2_Missense_Mutation_p.E588K|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.V515V	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	626	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						GTGCTTCTGTGAAGAAAATAA	0.463000													77	167					0	0	0.139131	0	0
GGT3P	2679	broad.mit.edu	37	22	18778604	18778604	+	RNA	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr22:18778604G>A	uc011ago.1	-	2		c.216C>T			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						TGGCATCCGCGGCCACGGCAG	0.562000													4	18					0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	22664186	22664186	+	RNA	SNP	A	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr22:22664186A>G	uc011aim.1	+	30		c.2043A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CAGATCAAGAAAGCACTCTGA	0.498000													4	122					0	0	0.058154	0	0
RAB36	9609	broad.mit.edu	37	22	23495275	23495275	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr22:23495275G>A	uc002zwv.1	+	5	521	c.481G>A	c.(481-483)GAA>AAA	p.E161K	RAB36_uc010gtw.1_Missense_Mutation_p.E139K	NM_004914	NP_004905	O95755	RAB36_HUMAN	RAB36, member RAS oncogene family	161					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.155)		GGTGGACTTTGAAATTGAGCG	0.507000													58	140					0	0	0.139131	0	0
SLC6A11	6538	broad.mit.edu	37	3	10916770	10916770	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:10916770C>G	uc003bvz.2	+	6	915	c.881C>G	c.(880-882)TCC>TGC	p.S294C		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	294					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TCCCGGCTCTCCGACCCCCAG	0.592000													32	50					0	0	0.134883	0	0
SCN5A	6331	broad.mit.edu	37	3	38648201	38648201	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:38648201G>A	uc003cio.2	-	9	1293	c.1099C>T	c.(1099-1101)CGC>TGC	p.R367C	SCN5A_uc003cin.2_Missense_Mutation_p.R367C|SCN5A_uc003cil.3_Missense_Mutation_p.R367C|SCN5A_uc010hhi.2_Missense_Mutation_p.R367C|SCN5A_uc010hhk.2_Missense_Mutation_p.R367C|SCN5A_uc011ayr.1_Missense_Mutation_p.R367C|SCN5A_uc010hhj.1_5'Flank	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	367					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GTCATCAGGCGGAAGAGTGCA	0.607000													28	25					0	0	0.108266	0	0
ABI3BP	25890	broad.mit.edu	37	3	100569516	100569516	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:100569516T>A	uc003dun.2	-	14	1373	c.1288A>T	c.(1288-1290)AGG>TGG	p.R430W	ABI3BP_uc003duo.2_Missense_Mutation_p.R472W	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	430	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						AGTGTTGCCCTTGGCTGTTCA	0.333000													4	94					0	0	0.009096	0	0
IFT122	55764	broad.mit.edu	37	3	129236334	129236334	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:129236334C>T	uc003emm.2	+	27	3494	c.3288C>T	c.(3286-3288)TTC>TTT	p.F1096F	IFT122_uc003eml.2_Silent_p.F1147F|IFT122_uc003emn.2_Silent_p.F1037F|IFT122_uc003emo.2_Silent_p.F986F|IFT122_uc003emp.2_Silent_p.F946F|IFT122_uc010htc.2_Silent_p.F1089F|IFT122_uc011bky.1_Silent_p.F887F|IFT122_uc003emq.2_Silent_p.F936F|IFT122_uc003emr.2_Silent_p.F849F|IFT122_uc011bla.1_Silent_p.F870F|IFT122_uc010hte.2_Silent_p.F422F|IFT122_uc003ems.2_Silent_p.F478F	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	1096					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						TGGTTGAGTTCTACCTGGAGG	0.572000													30	95					0	0	0.144211	0	0
TMEM22	80723	broad.mit.edu	37	3	136574394	136574394	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:136574394C>T	uc003erf.3	+	2	1306	c.1092C>T	c.(1090-1092)CTC>CTT	p.L364L	TMEM22_uc003erg.3_Silent_p.L364L|TMEM22_uc010hub.2_Silent_p.L364L	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	364	DUF6 2.					Golgi apparatus|integral to membrane				ovary(1)	1						TGCAGCTTCTCGTGCTGCACA	0.393000													113	386					0	0	0.139131	0	0
DZIP1L	199221	broad.mit.edu	37	3	137811366	137811366	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:137811366C>G	uc003erq.2	-	5	1092	c.729G>C	c.(727-729)CAG>CAC	p.Q243H	DZIP1L_uc003err.1_Missense_Mutation_p.Q243H	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	243	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						CTATTTCCCTCTGATGAATGA	0.333000													46	173					0	0	0.139131	0	0
ZBTB38	253461	broad.mit.edu	37	3	141162660	141162660	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:141162660G>C	uc003etw.2	+	8	2412	c.1430G>C	c.(1429-1431)AGA>ACA	p.R477T	ZBTB38_uc010hun.2_Missense_Mutation_p.R474T|ZBTB38_uc010huo.2_Missense_Mutation_p.R477T|ZBTB38_uc003ety.2_Missense_Mutation_p.R477T|ZBTB38_uc010hup.2_Missense_Mutation_p.R478T	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	477	C2H2-type 3.				positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AGCCTCCGAAGACATGCAAAT	0.428000													73	68					0	0	0.139131	0	0
ZBTB38	253461	broad.mit.edu	37	3	141162767	141162767	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:141162767G>A	uc003etw.2	+	8	2519	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K	ZBTB38_uc010hun.2_Missense_Mutation_p.E510K|ZBTB38_uc010huo.2_Missense_Mutation_p.E513K|ZBTB38_uc003ety.2_Missense_Mutation_p.E513K|ZBTB38_uc010hup.2_Missense_Mutation_p.E514K	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	513					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GCATACGGGAGAAAGACGATA	0.388000													83	110					0	0	0.139131	0	0
ZBTB38	253461	broad.mit.edu	37	3	141164162	141164162	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:141164162G>C	uc003etw.2	+	8	3914	c.2932G>C	c.(2932-2934)GAG>CAG	p.E978Q	ZBTB38_uc010hun.2_Missense_Mutation_p.E975Q|ZBTB38_uc010huo.2_Missense_Mutation_p.E978Q|ZBTB38_uc003ety.2_Missense_Mutation_p.E978Q|ZBTB38_uc010hup.2_Missense_Mutation_p.E979Q	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	978					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AGAAACTAAAGAGATGCCCAA	0.517000													32	37					0	0	0.134883	0	0
ATR	545	broad.mit.edu	37	3	142180859	142180859	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:142180859T>G	uc003eux.3	-	42	7237	c.7115A>C	c.(7114-7116)GAT>GCT	p.D2372A	ATR_uc003euy.1_Missense_Mutation_p.D258A	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2372	PI3K/PI4K.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CCCACATTCATCATTTAGTGG	0.313000								Other_conserved_DNA_damage_response_genes					120	320					0	0	0.139131	0	0
PSMD2	5708	broad.mit.edu	37	3	184026613	184026613	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:184026613C>T	uc003fnn.1	+	21	2695	c.2662C>T	c.(2662-2664)CTT>TTT	p.L888F	PSMD2_uc011brj.1_Missense_Mutation_p.L729F|PSMD2_uc011brk.1_Missense_Mutation_p.L758F	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	888					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	TGAGGAGTTTCTTCCTGTTAC	0.527000											OREG0015948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	306					0	0	0.139131	0	0
RNF168	165918	broad.mit.edu	37	3	196198875	196198875	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:196198875C>T	uc003fwq.2	-	6	2069	c.1531G>A	c.(1531-1533)GAG>AAG	p.E511K	RNF168_uc010iah.2_Missense_Mutation_p.E344K|uc010iag.1_5'Flank	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	511					double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		GAGCCTCTCTCTGGTGTTGGA	0.433000													10	854					0	0	0.058154	0	0
DCAF16	54876	broad.mit.edu	37	4	17805707	17805707	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:17805707C>A	uc003gpn.2	-	3	1119	c.58G>T	c.(58-60)GAA>TAA	p.E20*	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	20	Poly-Glu.					CUL4 RING ubiquitin ligase complex				ovary(1)	1						CTAATATTTTCTTCTTCCTCA	0.418000													33	25					2.81731e-10	3.01296e-10	0.045705	1	0
TMPRSS11A	339967	broad.mit.edu	37	4	68780365	68780365	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:68780365C>G	uc003hdr.1	-	9	1166	c.1045G>C	c.(1045-1047)GAT>CAT	p.D349H	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.D346H	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	349	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						GGTTTTATATCATTGCCATAC	0.383000													74	146					0	0	0.139131	0	0
HERC5	51191	broad.mit.edu	37	4	89390328	89390328	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:89390328G>A	uc003hrt.2	+	9	1308	c.1155G>A	c.(1153-1155)AAG>AAA	p.K385K	HERC5_uc011cdm.1_Silent_p.K23K	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	385					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		TTAATCTGAAGAGGACAATTC	0.398000													6	58					0	0	0.021553	0	0
NDST4	64579	broad.mit.edu	37	4	115998171	115998171	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:115998171G>A	uc003ibu.2	-	2	701	c.22C>T	c.(22-24)CGG>TGG	p.R8W	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	8	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		AAACTTCTCCGAAGTTTCACA	0.348000													15	30					0	0	0.119110	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951968	119951968	+	Silent	SNP	A	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:119951968A>C	uc003icm.3	+	4	2234	c.2038A>C	c.(2038-2040)AGA>CGA	p.R680R	SYNPO2_uc010ina.2_Silent_p.R680R|SYNPO2_uc010inb.2_Silent_p.R680R|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.R608R	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	680						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GCCAGCAAAAAGAACAGGAAT	0.507000													5	82					0	0	0.014758	0	0
FAT4	79633	broad.mit.edu	37	4	126398366	126398366	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:126398366C>A	uc003ifj.3	+	13	12350	c.12350C>A	c.(12349-12351)CCA>CAA	p.P4117Q	FAT4_uc011cgp.1_Missense_Mutation_p.P2380Q|FAT4_uc003ifi.1_Missense_Mutation_p.P1595Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4117	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCTCTAGAACCAATCCTTCAG	0.393000													77	179					1.7488e-33	1.93288e-33	0.139131	1	0
PDGFC	56034	broad.mit.edu	37	4	157693949	157693949	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:157693949C>T	uc003iph.1	-	4	1083	c.592G>A	c.(592-594)GAC>AAC	p.D198N	PDGFC_uc003ipi.1_Missense_Mutation_p.D35N|PDGFC_uc011cis.1_Missense_Mutation_p.D35N|PDGFC_uc011cir.1_Missense_Mutation_p.D42N	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	198					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		CGAATAAGGTCTTCCAAGGTA	0.438000													7	110					0	0	0.038147	0	0
FAT1	2195	broad.mit.edu	37	4	187509796	187509796	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:187509796C>T	uc003izf.2	-	27	13905	c.13717G>A	c.(13717-13719)GAA>AAA	p.E4573K	FAT1_uc010isn.2_Missense_Mutation_p.E220K|FAT1_uc003ize.2_Missense_Mutation_p.E464K	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4573	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GTCACCTCTTCGAAGTGGCCG	0.587000										HNSCC(5;0.00058)			4	59					0	0	0.009096	0	0
LPCAT1	79888	broad.mit.edu	37	5	1466877	1466877	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:1466877C>T	uc003jcm.2	-	13	1524	c.1407G>A	c.(1405-1407)GGG>GGA	p.G469G	LPCAT1_uc003jcl.2_Silent_p.G43G	NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	469	Lumenal (Potential).|EF-hand 2.				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		ATGTGATCTTCCCCTTCTCCT	0.652000													5	135					0	0	0.014758	0	0
PRLR	5618	broad.mit.edu	37	5	35065487	35065487	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:35065487G>T	uc003jjm.2	-	10	2103	c.1573C>A	c.(1573-1575)CCA>ACA	p.P525T	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.P424T	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	525	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CTCTGTTTTGGTAGCAATGAT	0.507000													4	183					0.00024832	0.000259556	0.009096	1	0
GPR98	84059	broad.mit.edu	37	5	90119301	90119301	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:90119301T>C	uc003kju.2	+	76	16352	c.16256T>C	c.(16255-16257)CTC>CCC	p.L5419P	GPR98_uc003kjt.2_Missense_Mutation_p.L3125P|GPR98_uc003kjw.2_Missense_Mutation_p.L1080P	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5419	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTCGTCGTGCTCCAGAAGGAT	0.478000													3	72					0	0	0.115264	0	0
CHD1	1105	broad.mit.edu	37	5	98212254	98212254	+	Silent	SNP	G	A	A	rs34603291		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:98212254G>A	uc003knf.2	-	23	3394	c.3246C>T	c.(3244-3246)TTC>TTT	p.F1082F	CHD1_uc010jbn.2_5'Flank	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1082					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	CACTTCCATTGAAACTAATCT	0.388000													43	54					0	0	0.124865	0	0
SEC24A	10802	broad.mit.edu	37	5	134002535	134002535	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:134002535G>A	uc003kzs.2	+	3	876	c.588G>A	c.(586-588)GTG>GTA	p.V196V	SEC24A_uc011cxu.1_5'UTR	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	196	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCCCTTAGTGAATCCACCTC	0.527000													36	51					0	0	0.098360	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140755393	140755393	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:140755393C>T	uc003ljy.1	+	1	1743	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.S581S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	581	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCCGCTCCGCAGAGCCCG	0.667000													85	79					0	0	0.139131	0	0
SLC36A2	153201	broad.mit.edu	37	5	150696422	150696422	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:150696422C>T	uc003lty.2	-	10	1538	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.E272K	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	470	Extracellular (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGAGAGTCTTCTGACTTGAGC	0.552000													41	40					0	0	0.117977	0	0
C6orf195	154386	broad.mit.edu	37	6	2623874	2623874	+	Silent	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:2623874G>C	uc003mtw.2	-	3	1168	c.183C>G	c.(181-183)CCC>CCG	p.P61P		NM_152554	NP_689767	Q96MT4	CF195_HUMAN	hypothetical protein LOC154386	61											0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				GGCCGGACCCGGGAGGGGAGA	0.632000													46	58					0	0	0.139131	0	0
BTN2A1	11120	broad.mit.edu	37	6	26468224	26468224	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:26468224C>T	uc003nib.1	+	8	1243	c.1031C>T	c.(1030-1032)TCA>TTA	p.S344L	BTN2A1_uc003nic.1_3'UTR|BTN2A1_uc003nid.1_Missense_Mutation_p.S192L|BTN2A1_uc011dko.1_Missense_Mutation_p.S283L|BTN2A1_uc010jqk.1_Missense_Mutation_p.S104L	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	344	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						CTCTTCCTGTCAGAGGACCGG	0.577000													5	88					0	0	0.014758	0	0
PSMB8	5696	broad.mit.edu	37	6	32810860	32810860	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:32810860C>T	uc003oce.2	-	2	197	c.154G>A	c.(154-156)GAA>AAA	p.E52K	PSMB8_uc003ocf.2_Missense_Mutation_p.E48K|PSMB8_uc011dqh.1_Missense_Mutation_p.E52K	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	52					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						TGGAAGAATTCTGTGGGCTGA	0.488000													22	19					0	0	0.091800	0	0
MDN1	23195	broad.mit.edu	37	6	90396657	90396657	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:90396657C>G	uc003pnn.1	-	69	11652	c.11536G>C	c.(11536-11538)GAG>CAG	p.E3846Q		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3846					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		ATGTGCTTCTCAAGCATCTGA	0.473000													31	241					0	0	0.134883	0	0
KIAA0776	23376	broad.mit.edu	37	6	96988513	96988513	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:96988513C>T	uc003por.2	+	11	1309	c.1261C>T	c.(1261-1263)CGA>TGA	p.R421*	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	421					negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		AAAAGATGAGCGAAGAAGGAA	0.303000													5	20					0	0	0.029380	0	0
BEND3	57673	broad.mit.edu	37	6	107391958	107391958	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:107391958G>A	uc003prs.2	-	5	1087	c.437C>T	c.(436-438)TCG>TTG	p.S146L		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	146										ovary(3)	3						CAGGTCCCCCGAGGGAGGATT	0.572000													89	137					0	0	0.139131	0	0
COL28A1	340267	broad.mit.edu	37	7	7472140	7472140	+	Silent	SNP	C	T	T	rs115295026	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:7472140C>T	uc003src.1	-	25	2079	c.1962G>A	c.(1960-1962)CCG>CCA	p.P654P	COL28A1_uc011jxe.1_Silent_p.P337P|COL28A1_uc003srd.2_Silent_p.P209P|COL28A1_uc003sre.1_Silent_p.P75P	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	654					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GTAAACCCATCGGCCCAGGGG	0.512000													22	75					0	0	0.062417	0	0
TMEM196	256130	broad.mit.edu	37	7	19765270	19765270	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:19765270G>A	uc011jyg.1	-	3	411	c.326C>T	c.(325-327)TCT>TTT	p.S109F	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	115	Helical; (Potential).					integral to membrane					0						GCACGCGAGAGACATGGAGGC	0.517000													5	102					0	0	0.014758	0	0
RPL23P8	222901	broad.mit.edu	37	7	20867204	20867204	+	RNA	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:20867204C>T	uc011jyj.1	+	1		c.288C>T				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						CAATGAAAGTCATACCAGAGA	0.448000													20	50					0	0	0.055883	0	0
DNAH11	8701	broad.mit.edu	37	7	21603847	21603847	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:21603847G>A	uc003svc.2	+	6	1057	c.1026G>A	c.(1024-1026)CTG>CTA	p.L342L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	342	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TGAGACCTCTGAGGAGACACA	0.423000									Kartagener_syndrome				41	78					0	0	0.098360	0	0
DNAH11	8701	broad.mit.edu	37	7	21827105	21827105	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:21827105G>A	uc003svc.2	+	61	9880	c.9849G>A	c.(9847-9849)TTG>TTA	p.L3283L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3283	Stalk (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AACACTATTTGAAAGACCCAG	0.378000									Kartagener_syndrome				24	54					0	0	0.099896	0	0
AEBP1	165	broad.mit.edu	37	7	44148893	44148893	+	Missense_Mutation	SNP	G	A	A	rs75175945		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:44148893G>A	uc003tkb.2	+	9	1408	c.1103G>A	c.(1102-1104)CGA>CAA	p.R368Q	AEBP1_uc003tkc.3_5'Flank|AEBP1_uc003tkd.2_5'Flank	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	368					cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTAGAGCCCCGAAAGGGCGAG	0.652000													6	14					0	0	0.038147	0	0
AEBP1	165	broad.mit.edu	37	7	44151872	44151872	+	Silent	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:44151872C>G	uc003tkb.2	+	17	2474	c.2169C>G	c.(2167-2169)CCC>CCG	p.P723P	AEBP1_uc003tkc.3_Silent_p.P298P|AEBP1_uc003tkd.2_5'UTR	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	723	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCGGGTCCCCAACAATAACT	0.582000													9	110					0	0	0.069234	0	0
SBDS	51119	broad.mit.edu	37	7	66453398	66453398	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:66453398T>C	uc003tvm.1	-	5	897	c.713A>G	c.(712-714)AAT>AGT	p.N238S		NM_016038	NP_057122	Q9Y3A5	SBDS_HUMAN	Shwachman-Bodian-Diamond syndrome protein	238					bone marrow development|bone mineralization|leukocyte chemotaxis|mature ribosome assembly|mitotic spindle stabilization|positive regulation of translation|ribosomal large subunit biogenesis|rRNA processing	cytoplasm|nucleolus|nucleoplasm|spindle pole	microtubule binding|ribosome binding|rRNA binding			ovary(1)	1						ATCTTTCAGATTGAGTACTTC	0.393000			Gene Conversion			AML|MDS			Shwachman-Diamond_syndrome				52	91					0	0	0.139131	0	0
COL1A2	1278	broad.mit.edu	37	7	94057017	94057017	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:94057017T>C	uc003ung.1	+	49	3817	c.3346T>C	c.(3346-3348)TTC>CTC	p.F1116L	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1116					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CGATGGAGACTTCTACAGGGC	0.542000										HNSCC(75;0.22)			34	128					0	0	0.050027	0	0
Unknown	0	broad.mit.edu	37	7	100549721	100549721	+	5'Flank	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:100549721C>T	uc003uxk.1	+						uc003uxl.1_5'Flank					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCCAACACCTCAACCACCCCG	0.522000													18	139					0	0	0.099896	0	0
PSMC2	5701	broad.mit.edu	37	7	103008390	103008390	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:103008390C>G	uc003vbs.2	+	12	1261	c.1191C>G	c.(1189-1191)ATC>ATG	p.I397M	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011klo.1_Missense_Mutation_p.I260M	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	397					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						TGTTTGCCATCAGAGCACGGC	0.423000													23	107					0	0	0.091800	0	0
CHRM2	1129	broad.mit.edu	37	7	136700956	136700956	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:136700956G>A	uc003vtf.1	+	4	1967	c.1344G>A	c.(1342-1344)AAG>AAA	p.K448K	CHRM2_uc003vtg.1_Silent_p.K448K|CHRM2_uc003vtj.1_Silent_p.K448K|CHRM2_uc003vtk.1_Silent_p.K448K|CHRM2_uc003vtl.1_Silent_p.K448K|CHRM2_uc003vtm.1_Silent_p.K448K|CHRM2_uc003vti.1_Silent_p.K448K|CHRM2_uc003vto.1_Silent_p.K448K|CHRM2_uc003vtn.1_Silent_p.K448K|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	448	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CCACCTTCAAGAAGACCTTTA	0.433000													25	207					0	0	0.099896	0	0
RP1L1	94137	broad.mit.edu	37	8	10466630	10466630	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr8:10466630C>T	uc003wtc.2	-	4	5207	c.4978G>A	c.(4978-4980)GAG>AAG	p.E1660K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1660					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACGCAGGCCTCGCAGGGACAG	0.647000													34	39					0	0	0.045705	0	0
PRKDC	5591	broad.mit.edu	37	8	48830905	48830905	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr8:48830905G>A	uc003xqi.2	-	22	2515	c.2458C>T	c.(2458-2460)CGG>TGG	p.R820W	PRKDC_uc003xqj.2_Missense_Mutation_p.R820W|PRKDC_uc011ldh.1_Missense_Mutation_p.R820W	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	820					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGGGCAGCCCGAGAAAGAGCT	0.338000								NHEJ					3	15					0	0	0.115264	0	0
ARMC1	55156	broad.mit.edu	37	8	66539550	66539550	+	Silent	SNP	C	T	T	rs140241141	byFrequency	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr8:66539550C>T	uc003xvl.2	-	2	319	c.84G>A	c.(82-84)CCG>CCA	p.P28P	ARMC1_uc011leo.1_5'UTR	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	28					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			TTCTGTTTAACGGATCTGCTG	0.493000													75	154					0	0	0.139131	0	0
PLEC	5339	broad.mit.edu	37	8	145024409	145024409	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr8:145024409G>A	uc003zaf.1	-	1	636	c.466C>T	c.(466-468)CCT>TCT	p.P156S	PLEC_uc003zag.1_Intron|PLEC_uc003zah.2_Intron|PLEC_uc003zaj.2_Intron	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	156	Globular 1.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GTGGTAGCAGGCACCACAGGG	0.692000													3	2					0	0	0.115264	0	0
KIAA2026	158358	broad.mit.edu	37	9	5923062	5923062	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:5923062C>T	uc003zjq.3	-	8	3150	c.2934G>A	c.(2932-2934)AAG>AAA	p.K978K	KIAA2026_uc010mht.2_Silent_p.K153K	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	978										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		GCTCTGTATGCTTTGATTCAC	0.423000													51	93					0	0	0.139131	0	0
UHRF2	115426	broad.mit.edu	37	9	6434113	6434113	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:6434113C>T	uc003zjy.2	+	3	924	c.584C>T	c.(583-585)ACG>ATG	p.T195M	UHRF2_uc003zjz.2_RNA|UHRF2_uc003zka.1_Translation_Start_Site	NM_152896	NP_690856	Q96PU4	UHRF2_HUMAN	ubiquitin-like with PHD and ring finger domains	195	Interaction with PCNP.				cell cycle|cell differentiation|cell proliferation|protein autoubiquitination|regulation of cell cycle|ubiquitin-dependent protein catabolic process	nucleus	DNA binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0392)|Lung(218;0.129)		GTACCCTCTACGTCTAATTCA	0.353000													26	47					0	0	0.144211	0	0
C9orf93	203238	broad.mit.edu	37	9	15744508	15744508	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:15744508G>C	uc003zmd.2	+	17	2602	c.2287G>C	c.(2287-2289)GAG>CAG	p.E763Q	C9orf93_uc010mih.1_Missense_Mutation_p.E771Q|C9orf93_uc003zme.2_Missense_Mutation_p.E678Q|C9orf93_uc011lmu.1_Missense_Mutation_p.E771Q|C9orf93_uc003zmf.1_Missense_Mutation_p.E71Q	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	763											0				GBM - Glioblastoma multiforme(50;4.84e-07)		CAACACCTTTGAGTTGTTCAA	0.443000													5	363					0	0	0.021553	0	0
TEK	7010	broad.mit.edu	37	9	27169490	27169490	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:27169490C>T	uc003zqi.3	+	4	933	c.491C>T	c.(490-492)TCA>TTA	p.S164L	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Missense_Mutation_p.S164L|TEK_uc011lno.1_Missense_Mutation_p.S164L|TEK_uc011lnp.1_Missense_Mutation_p.S60L|TEK_uc003zqj.1_Missense_Mutation_p.S141L	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	164	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TTCATCCATTCAGTGCCCCGG	0.483000													119	254					0	0	0.139131	0	0
TPM2	7169	broad.mit.edu	37	9	35685308	35685308	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:35685308C>T	uc003zxq.2	-	5	760	c.521G>A	c.(520-522)GGA>GAA	p.G174E	TPM2_uc003zxr.2_Missense_Mutation_p.G174E|TPM2_uc003zxs.2_Missense_Mutation_p.G174E|TPM2_uc010mkz.2_Missense_Mutation_p.G174E|TPM2_uc011lpa.1_Missense_Mutation_p.G174E	NM_213674	NP_998839	P07951	TPM2_HUMAN	tropomyosin 2 (beta) isoform 2	174	By similarity.				muscle filament sliding|regulation of ATPase activity	cytosol|muscle thin filament tropomyosin	actin binding|structural constituent of muscle			ovary(1)	1	all_epithelial(49;0.121)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CTCCAGCTCTCCTTCCAGGAT	0.617000													11	79					0	0	0.069234	0	0
Unknown	0	broad.mit.edu	37	9	82006315	82006315	+	IGR	SNP	C	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:82006315C>A								None (None upstream) : TLE4 (180563 downstream)																							ACCAGTTGCTCAGCCACCAGC	0.682000													15	35					0.00244969	0.00252625	0.119110	1	0
HSDL2	84263	broad.mit.edu	37	9	115221855	115221855	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:115221855C>T	uc004bga.1	+	10	1235	c.1142C>T	c.(1141-1143)TCA>TTA	p.S381L	HSDL2_uc011lwv.1_Missense_Mutation_p.S260L|HSDL2_uc004bgb.1_Missense_Mutation_p.S215L|HSDL2_uc004bgc.1_Missense_Mutation_p.S308L|HSDL2_uc011lww.1_Missense_Mutation_p.S176L	NM_032303	NP_115679	Q6YN16	HSDL2_HUMAN	hydroxysteroid dehydrogenase like 2	381	SCP2.					peroxisome	oxidoreductase activity|sterol binding				0						AAAATGTTTTCAGGTGAGTTT	0.368000													43	94					0	0	0.139131	0	0
CEP110	11064	broad.mit.edu	37	9	123906317	123906317	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:123906317C>T	uc004bkx.1	+	18	3039	c.3008C>T	c.(3007-3009)TCC>TTC	p.S1003F	CEP110_uc004bky.1_Missense_Mutation_p.S607F|CEP110_uc004bla.1_Missense_Mutation_p.S451F|CEP110_uc010mvo.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1003	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						CAGCTGAAGTCCCTTCATGGA	0.438000													17	33					0	0	0.038395	0	0
DAB2IP	153090	broad.mit.edu	37	9	124522191	124522191	+	Silent	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:124522191C>T	uc004bln.2	+	6	628	c.559C>T	c.(559-561)CTG>TTG	p.L187L	DAB2IP_uc004blo.2_Silent_p.L91L	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	215	C2.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						GGAGCACATCCTGAAGCTGTG	0.632000													10	36					0	0	0.069234	0	0
STRBP	55342	broad.mit.edu	37	9	125923338	125923338	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:125923338G>A	uc004bns.2	-	7	975	c.545C>T	c.(544-546)TCG>TTG	p.S182L	STRBP_uc004bnt.2_5'UTR|STRBP_uc004bnu.2_Missense_Mutation_p.S168L|STRBP_uc004bnv.2_Missense_Mutation_p.S182L	NM_018387	NP_060857	Q96SI9	STRBP_HUMAN	spermatid perinuclear RNA binding protein	182	DZF.				multicellular organismal development	cytoplasm|nucleus	DNA binding	p.S182S(1)		breast(1)|skin(1)	2						ATCTTTCATCGAAACATTTTC	0.363000													13	26					0	0	0.132662	0	0
ZNF645	158506	broad.mit.edu	37	X	22291584	22291584	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:22291584C>T	uc004dai.1	+	1	525	c.476C>T	c.(475-477)CCG>CTG	p.P159L		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	159						intracellular	zinc ion binding			lung(1)|pancreas(1)	2						CATATTGCTCCGCCACAAACT	0.463000													89	104					0	0	0.139131	0	0
KDM6A	7403	broad.mit.edu	37	X	44942757	44942757	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:44942757G>A	uc004dge.3	+	23	3712	c.3337G>A	c.(3337-3339)GTA>ATA	p.V1113I	KDM6A_uc011mkz.1_Missense_Mutation_p.V1165I|KDM6A_uc011mla.1_Missense_Mutation_p.V1068I|KDM6A_uc011mlb.1_Missense_Mutation_p.V1120I|KDM6A_uc011mlc.1_Missense_Mutation_p.V817I|KDM6A_uc011mld.1_Missense_Mutation_p.V752I	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1113	JmjC.				histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TGTGCGTGTCGTATCAGCAGG	0.418000			D|N|F|S		renal|oesophageal SCC|MM								19	94					0	0	0.038395	0	0
OTUD6A	139562	broad.mit.edu	37	X	69282720	69282720	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:69282720G>C	uc004dxu.1	+	1	380	c.346G>C	c.(346-348)GAG>CAG	p.E116Q		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	116										lung(1)|skin(1)	2						CTTCCAGGCTGAGATGTCGGA	0.622000													9	2					0	0	0.047766	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299507	125299507	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:125299507G>A	uc004euk.1	-	1	428	c.401C>T	c.(400-402)CCC>CTC	p.P134L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	134										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCGCATGAGGGGGATGCGCGT	0.647000													8	138					0	0	0.047766	0	0
GPR112	139378	broad.mit.edu	37	X	135427980	135427980	+	Silent	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:135427980G>A	uc004ezu.1	+	6	2406	c.2115G>A	c.(2113-2115)CTG>CTA	p.L705L	GPR112_uc010nsb.1_Silent_p.L500L|GPR112_uc010nsc.1_Silent_p.L472L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	705	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCACCCCACTGAAAGCATCTC	0.388000													6	91					0	0	0.029380	0	0
SLITRK2	84631	broad.mit.edu	37	X	144905814	144905814	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chrX:144905814G>A	uc004fcd.2	+	5	2861	c.1871G>A	c.(1870-1872)GGA>GAA	p.G624E	SLITRK2_uc010nsp.2_Missense_Mutation_p.G624E|SLITRK2_uc010nso.2_Missense_Mutation_p.G624E|SLITRK2_uc011mwq.1_Missense_Mutation_p.G624E|SLITRK2_uc011mwr.1_Missense_Mutation_p.G624E|SLITRK2_uc011mws.1_Missense_Mutation_p.G624E|SLITRK2_uc004fcg.2_Missense_Mutation_p.G624E|SLITRK2_uc011mwt.1_Missense_Mutation_p.G624E	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	624	Helical; (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TTAATTCTGGGATTGCTTGTT	0.453000													7	126					0	0	0.029380	0	0
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	AGCT	AGCT	rs141324796	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663													3	4	---	---	---	---					
LOC144438	144438	broad.mit.edu	37	12	49086750	49086750	+	5'Flank	DEL	A	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:49086750delA	uc001rsd.3	-							NR_024266				Homo sapiens cDNA FLJ11223 fis, clone PLACE1008209.												0						TTCTTAGTCCAAAAAAAAAAA	0.323													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	128232137	128232140	+	IGR	DEL	TTCC	-	-	rs71696637		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr12:128232137_128232140delTTCC								None (None upstream) : TMEM132C (667151 downstream)																							ctttccttctttccttccttcctt	0.265													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	41471775	41471788	+	IGR	DEL	GAAAGGAAAGAAAG	-	-	rs60400317	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:41471775_41471788delGAAAGGAAAGAAAG								INO80 (63435 upstream) : EXD1 (3145 downstream)																							agacaggaaagaaaggaaagaaaggaaaggaaag	0.009													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	85070233	85070233	+	IGR	DEL	A	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr15:85070233delA								GOLGA6L5 (10155 upstream) : UBE2Q2P1 (194 downstream)																							AGTCAAGGGGAAAAGGTAAAA	0.388													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	54509149	54509152	+	IGR	DEL	AAGC	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr16:54509149_54509152delAAGC								IRX3 (188771 upstream) : IRX5 (455959 downstream)																							gaaggaaggaaagcaggaaagcag	0.186													4	6	---	---	---	---					
ITGB4	3691	broad.mit.edu	37	17	73732157	73732158	+	Frame_Shift_Del	DEL	GT	-	-	rs121912463		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr17:73732157_73732158delGT	uc002jpg.2	+	14	1870_1871	c.1683_1684delGT	c.(1681-1686)CAGTGTfs	p.Q561fs	ITGB4_uc002jph.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgo.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpi.3_Frame_Shift_Del_p.Q561fs|ITGB4_uc010dgp.1_Frame_Shift_Del_p.Q561fs|ITGB4_uc002jpj.2_Frame_Shift_Del_p.Q561fs|ITGB4_uc010wsh.1_Frame_Shift_Del_p.Q116fs	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	561_562	III.|Extracellular (Potential).|Cysteine-rich tandem repeats.		C -> R (in EB-PA; mild form).		cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCATGGGCCAGTGTGTGTGTGA	0.604													8	1199	---	---	---	---					
STEAP3	55240	broad.mit.edu	37	2	120003197	120003216	+	Frame_Shift_Del	DEL	CCCTGGCCACACGCCTGGTG	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr2:120003197_120003216delCCCTGGCCACACGCCTGGTG	uc002tlp.2	+	3	282_301	c.125_144delCCCTGGCCACACGCCTGGTG	c.(124-144)TCCCTGGCCACACGCCTGGTGfs	p.S42fs	STEAP3_uc002tlq.2_Frame_Shift_Del_p.S52fs|STEAP3_uc002tlr.2_Frame_Shift_Del_p.S42fs|STEAP3_uc010fle.2_Frame_Shift_Del_p.S42fs	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	42_48	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TTTGCCCGCTCCCTGGCCACACGCCTGGTGGGCTCTGGCT	0.632													10	50	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	11727879	11727880	+	IGR	INS	-	AAAAGAAAAGAAAA	AAAAGAAAAGAAAA	rs148111754	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:11727879_11727880insAAAAGAAAAGAAAA								None (None upstream) : BTBD3 (143597 downstream)																							aggaaggaaggaaAAGAAAAGA	0.248													3	4	---	---	---	---					
MYH7B	57644	broad.mit.edu	37	20	33577924	33577927	+	Frame_Shift_Del	DEL	TGAG	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr20:33577924_33577927delTGAG	uc002xbi.1	+	19	2093_2096	c.2001_2004delTGAG	c.(1999-2004)TATGAGfs	p.Y667fs	MIR499_hsa-mir-499|MI0003183_5'Flank	NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	625_626	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CGACTCTCTATGAGAATTATGCGG	0.554													63	187	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	33157590	33157592	+	IGR	DEL	CAT	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr21:33157590_33157592delCAT								SFRS15 (53159 upstream) : HUNK (88036 downstream)																							ccaccaccaccatcaccaccatc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	183838225	183838226	+	IGR	INS	-	AG	AG			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr3:183838225_183838226insAG								HTR3E (13443 upstream) : EIF2B5 (14584 downstream)																							ggaaggaaggaaggaaggaagg	0.000													2	4	---	---	---	---					
FABP2	2169	broad.mit.edu	37	4	120243417	120243418	+	5'Flank	INS	-	TC	TC	rs144572173	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:120243417_120243418insTC	uc003icw.2	-							NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2								fatty acid binding			ovary(1)	1						TTAATTCTTATTAATTAATTCT	0.282													5	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	183768091	183768092	+	IGR	DEL	GT	-	-			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr4:183768091_183768092delGT								ODZ3 (43914 upstream) : DCTD (43153 downstream)																							AGTACAGATCgtgtgtgtgtgt	0.302													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	44716765	44716766	+	IGR	INS	-	GAAG	GAAG	rs144322268	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:44716765_44716766insGAAG								FGF10 (327981 upstream) : MRPS30 (92261 downstream)																							gaaggaagcaagaaggaaggaa	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	98023150	98023151	+	IGR	INS	-	GGAA	GGAA	rs59946738		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr5:98023150_98023151insGGAA								None (None upstream) : RGMB (81848 downstream)																							gaaggaaggaagaaagaggaag	0.045													2	4	---	---	---	---					
HCG4	54435	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	-	-	rs146714150		TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	uc003nns.2	-	1		c.478_498delTGCTCCATCCACGGCGCCCGC			uc010jrm.1_In_Frame_Del_p.AGAVDGA111del|uc003nnt.2_In_Frame_Del_p.RAPWMEQ147del|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													3	3	---	---	---	---					
TREML2	79865	broad.mit.edu	37	6	41169021	41169022	+	5'Flank	INS	-	A	A	rs143585501	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr6:41169021_41169022insA	uc010jxm.1	-							NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid						T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					GGCCCCAAGCCGGGAGGACTCA	0.634													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	46544293	46544294	+	IGR	INS	-	AAGGAAGGAAGG	AAGGAAGGAAGG	rs142346752	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr7:46544293_46544294insAAGGAAGGAAGG								IGFBP3 (583422 upstream) : TNS3 (770459 downstream)																							aggaaggaagtaaggaaggaag	0.000													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	134727338	134727379	+	IGR	DEL	TCCTTCCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTTCCTTC	-	-	rs71293266	by1000genomes	TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr8:134727338_134727379delTCCTTCCTCCCTCCCTTCCTTCCTCCCTTCCTTCCTTCCTTC								ST3GAL1 (143155 upstream) : ZFAT (762654 downstream)																							cttccttccttccttcctccctcccttccttcctcccttccttccttccttctttcttccct	0.033													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	70117457	70117458	+	IGR	INS	-	G	G			TCGA-DS-A0VK-01A-21D-A10S-08	TCGA-DS-A0VK-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	32b46e90-0ae6-4a05-a9b7-2789bbbe302f	50a0ff00-368c-4a4b-bd1c-61c55290fb5d	g.chr9:70117457_70117458insG								LOC100133920 (452508 upstream) : FOXD4L5 (58251 downstream)																							aagaaagaaaaaGAGAGAGAGA	0.074													2	4	---	---	---	---					
