Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TTN	7273	broad.mit.edu	37	2	179659659	179659659	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr2:179659659C>T	uc021vsy.1	-	6	1460	c.1235G>A	c.(1234-1236)gGt>gAt	p.G412D	TTN_uc021vsz.1_Missense_Mutation_p.G412D|TTN_uc021vta.1_Missense_Mutation_p.G412D|TTN_uc021vtb.1_Missense_Mutation_p.G412D|TTN_uc002unb.2_Missense_Mutation_p.G412D|TTN_uc010frg.1_Missense_Mutation_p.G86D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	Homo sapiens titin (TTN), transcript variant N2-A, mRNA.	412	Ala-rich.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTTTAGCACCAGTGGCAAC	0.493000														58			33		0	0	0.004878	0	0
M55536	0	broad.mit.edu	37	5	167979713	167979713	+	RNA	SNP	A	C	C			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr5:167979713A>C	uc003lzy.3	-	0		c.262T>G								Homo sapiens cDNA clone IMAGE:5299317.																		GACAGAACAAAACGCCATGCC	0.423000														1			4		0	0	0.000248	0	0
ZNF304	57343	broad.mit.edu	37	19	57869057	57869057	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr19:57869057G>A	uc010etw.3	+	3	2349	c.1961G>A	c.(1960-1962)aGg>aAg	p.R654K	ZNF304_uc010ygw.2_Missense_Mutation_p.R607K|ZNF304_uc010etx.3_Missense_Mutation_p.R565K	NM_020657	NP_065708	Q9HCX3	ZN304_HUMAN	Homo sapiens zinc finger protein 304 (ZNF304), mRNA.	607					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(1)	26		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		CTGCACCAGAGGGTTCACACT	0.478000														70			19		0	0	0.008871	0	0
BC107568	0	broad.mit.edu	37	GL000195.1	138103	138103	+	RNA	SNP	T	C	C			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chrGL000195.1:138103T>C	uc003won.1	+	0		c.137T>C								Homo sapiens cDNA clone IMAGE:3683736.																		TGGGGACGCATAGTTAAGGTG	0.597000														5			2		0	0	0.004672	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870045	151870045	+	Silent	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chrX:151870045G>A	uc022chf.1	+	0	735	c.735G>A	c.(733-735)ctG>ctA	p.L245L	MAGEA6_uc004ffq.1_Silent_p.L245L|MAGEA6_uc004ffr.1_Silent_p.L245L	NM_175868	NP_787064	P43360	MAGA6_HUMAN	Homo sapiens melanoma antigen family A, 6 (MAGEA6), transcript variant 2, mRNA.	245	MAGE.						protein binding			breast(1)|endometrium(3)|large_intestine(3)|lung(16)|prostate(3)|skin(1)|urinary_tract(1)	28	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAGAAGCTGCTCACCCAAT	0.562000														191			7		0	0	0.001984	0	0
BC139719	0	broad.mit.edu	37	16	90161578	90161578	+	Silent	SNP	G	A	A	rs13337896	by1000genomes	TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr16:90161578G>A	uc002fqq.3	+	3	504	c.504G>A	c.(502-504)acG>acA	p.T168T	BC139719_uc002fqp.3_Silent_p.T151T					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.									p.R105H(3)									GCCAAGGGACGCTACACCGAA	0.587000														56			5		0	0	0.000602	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr11:3427845C>T	uc010qxs.1	+	8		c.838C>T			LOC650368_uc001lxy.2_Non-coding_Transcript					Homo sapiens asparagine-linked glycosylation 1-like pseudogene (LOC650368), non-coding RNA.																		CTTCAAGTGGCAGGAGCAGAA	0.587000														62			7		0	0	0.001984	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579564	35579564	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr1:35579564A>G	uc001bym.3	+	9	2279	c.2133A>G	c.(2131-2133)atA>atG	p.I711M	ZMYM1_uc001byn.3_Missense_Mutation_p.I711M|ZMYM1_uc010ohu.2_Missense_Mutation_p.I692M|ZMYM1_uc001byo.3_Missense_Mutation_p.I351M|ZMYM1_uc009vut.3_Missense_Mutation_p.I636M	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	Homo sapiens zinc finger, MYM-type 1 (ZMYM1), mRNA.	711						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding			NS(1)|breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(5)|lung(8)|prostate(3)|skin(1)|upper_aerodigestive_tract(2)	31		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TGGATAAAATACATGGCCAGG	0.353000														22			3		0	0	0.004672	0	0
DEFB114	245928	broad.mit.edu	37	6	49931770	49931770	+	Silent	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr6:49931770G>A	uc011dwp.2	-	0	49	c.49C>T	c.(49-51)Cta>Tta	p.L17L		NM_001037499	NP_001032588	Q30KQ6	DB114_HUMAN	Homo sapiens defensin, beta 114 (DEFB114), mRNA.	17					defense response to bacterium	extracellular region				kidney(1)|large_intestine(1)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	8	Lung NSC(77;0.042)					TTACCTGGTAGAATGAAGGTC	0.284000														38			10		0	0	0.008291	0	0
AL117485	0	broad.mit.edu	37	22	18844823	18844823	+	RNA	SNP	C	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr22:18844823C>A	uc002zoe.3	+	3		c.2077C>A			AL117485_uc002zof.3_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CCAGTGCTCACCGATGCCCTC	0.602000														15			6		2.7689e-08	5.28607e-08	0.001984	1	0
TGFBRAP1	9392	broad.mit.edu	37	2	105886051	105886051	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr2:105886051G>A	uc002tcq.3	-	10	2168	c.2084C>T	c.(2083-2085)gCg>gTg	p.A695V	TGFBRAP1_uc010fjc.3_Missense_Mutation_p.A464V|TGFBRAP1_uc002tcr.4_Missense_Mutation_p.A695V	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	Homo sapiens transforming growth factor, beta receptor associated protein 1 (TGFBRAP1), transcript variant 1, mRNA.	695					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(5)|lung(11)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1)	31						GTCCTCGGCCGCTGCAAAGTC	0.657000														27			5		0	0	0.000602	0	0
CPSF7	79869	broad.mit.edu	37	11	61183647	61183647	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr11:61183647G>T	uc001nrq.3	-	5	1029	c.895C>A	c.(895-897)Cca>Aca	p.P299T	CPSF7_uc001nrp.3_Missense_Mutation_p.P342T|CPSF7_uc001nrr.3_Missense_Mutation_p.P290T|CPSF7_uc001nrs.1_Missense_Mutation_p.P200T	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	Homo sapiens cleavage and polyadenylation specific factor 7, 59kDa (CPSF7), transcript variant 2, mRNA.	299	Pro-rich.				mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	RNA binding|nucleotide binding|protein binding	p.P298fs*14(1)		breast(3)|central_nervous_system(1)|cervix(2)|endometrium(1)|kidney(2)|large_intestine(5)|lung(5)|skin(2)|upper_aerodigestive_tract(1)	22						GTAGCGTTTGGTGGGGGGAAG	0.557000														144			6		4.096e-09	8.192e-09	0.001168	1	0
PYGM	5837	broad.mit.edu	37	11	64522811	64522811	+	Silent	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr11:64522811G>A	uc001oax.4	-	6	1606	c.789C>T	c.(787-789)taC>taT	p.Y263Y	PYGM_uc001oay.4_Silent_p.Y175Y	NM_005609	NP_005600	P11217	PYGM_HUMAN	Homo sapiens phosphorylase, glycogen, muscle (PYGM), transcript variant 1, mRNA.	263					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			cervix(1)|endometrium(2)|kidney(3)|large_intestine(4)|lung(21)|ovary(3)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	38					Pyridoxal Phosphate(DB00114)	CAGCCTGGATGTAGCCACCGA	0.617000														161			10		0	0	0.008291	0	0
CRY1	1407	broad.mit.edu	37	12	107399011	107399011	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr12:107399011T>C	uc001tmi.3	-	2	1142	c.283A>G	c.(283-285)Aaa>Gaa	p.K95E		NM_004075	NP_004066	Q16526	CRY1_HUMAN	Homo sapiens cryptochrome 1 (photolyase-like) (CRY1), mRNA.	95	DNA photolyase.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA photolyase activity|blue light photoreceptor activity|double-stranded DNA binding|nucleotide binding|protein binding			NS(2)|breast(2)|central_nervous_system(1)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(11)|ovary(3)|skin(1)	29						ATTGAAAGTTTAGTAATGTTC	0.343000														86			51		0	0	0.003610	0	0
SYT3	84258	broad.mit.edu	37	19	51135675	51135675	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr19:51135675G>A	uc002pst.3	-	1	1176	c.542C>T	c.(541-543)cCg>cTg	p.P181L	SYT3_uc002psv.3_Missense_Mutation_p.P181L|SYT3_uc010ycd.2_Missense_Mutation_p.P181L	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	Homo sapiens synaptotagmin III (SYT3), transcript variant 1, mRNA.	181						cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			breast(1)|endometrium(2)|kidney(2)|large_intestine(5)|lung(16)|ovary(2)|prostate(2)|skin(3)|urinary_tract(2)	35		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		TGTTTGGCTCGGTTTGACCCC	0.657000														42			20		0	0	0.008871	0	0
CCDC71	64925	broad.mit.edu	37	3	49200861	49200862	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	g.chr3:49200861_49200862delCT	uc003cwg.4	-	1	918_919	c.780_781delAG	c.(778-783)agagccfs	p.R260fs	CCDC71_uc021wxs.1_Frame_Shift_Del_p.R260fs	NM_022903	NP_075054	Q8IV32	CCD71_HUMAN	Homo sapiens coiled-coil domain containing 71 (CCDC71), mRNA.	260										endometrium(1)|large_intestine(4)|lung(3)|ovary(1)|prostate(1)	10				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GACCCAGTGGCTCTGTTGGTTT	0.624													---	109	---	---	43	---					
