Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	validation_method	t_ref_count	validation_status	validation_tumor_sample	t_alt_count	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ST6GALNAC5	81849	broad.mit.edu	37	1	77528835	77528835	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr1:77528835G>A	uc001dhi.3	+	4	1130	c.955G>A	c.(955-957)Gac>Aac	p.D319N	ST6GALNAC5_uc010ori.2_3'UTR|ST6GALNAC5_uc009wbw.3_Non-coding_Transcript|ST6GALNAC5_uc001dhj.3_5'Flank	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	Homo sapiens ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA.	319					protein glycosylation	integral to Golgi membrane	sialyltransferase activity			endometrium(2)|kidney(1)|large_intestine(6)|lung(5)|pancreas(2)|skin(1)|upper_aerodigestive_tract(1)	18						TTTTCAACCAGACTGGAAACC	0.438000														89			40		0	0	0.00195071	0	0
ALPP	250	broad.mit.edu	37	2	233244230	233244230	+	Missense_Mutation	SNP	A	G	G	rs1130341		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr2:233244230A>G	uc002vsq.3	+	3	482	c.317A>G	c.(316-318)aAt>aGt	p.N106S		NM_001632	NP_001623	P05187	PPB1_HUMAN	Homo sapiens alkaline phosphatase, placental (ALPP), mRNA.	106						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			NS(1)|biliary_tract(1)|endometrium(1)|kidney(4)|large_intestine(2)|liver(1)|lung(10)|ovary(2)	22		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		CAGACATACAATGTAGACAAA	0.577000														19			3		0	0	6.4e-05	0	0
RSPRY1	89970	broad.mit.edu	37	16	57265132	57265132	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr16:57265132A>G	uc002elb.3	+	12	1708	c.1430A>G	c.(1429-1431)aAt>aGt	p.N477S	RSPRY1_uc002elc.3_Missense_Mutation_p.N477S|RSPRY1_uc002eld.3_Missense_Mutation_p.N477S	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	Homo sapiens ring finger and SPRY domain containing 1 (RSPRY1), mRNA.	477	B30.2/SPRY.					extracellular region	zinc ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(10)|ovary(1)|prostate(1)|urinary_tract(3)	27						TGTGAGTTCAATTTTGGAGCA	0.333000														55			23		0	0	0.00047179	0	0
TRPC4AP	26133	broad.mit.edu	37	20	33591257	33591257	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr20:33591257G>T	uc002xbk.3	-	17	2246	c.2212C>A	c.(2212-2214)Cag>Aag	p.Q738K	TRPC4AP_uc002xbj.3_Non-coding_Transcript|TRPC4AP_uc010zuq.2_Missense_Mutation_p.Q329K|TRPC4AP_uc010zur.2_Missense_Mutation_p.Q699K|TRPC4AP_uc002xbl.3_Missense_Mutation_p.Q730K	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	Homo sapiens transient receptor potential cation channel, subfamily C, member 4 associated protein (TRPC4AP), transcript variant 1, mRNA.	738					protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			breast(3)|central_nervous_system(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(13)|skin(1)|stomach(1)|urinary_tract(1)	32			BRCA - Breast invasive adenocarcinoma(18;0.00936)			AGGTAGTGCTGCTGCCAGAAG	0.632000														69			28		5.90632e-09	3.33627e-08	0.0024448	1	0
MEGF8	1954	broad.mit.edu	37	19	42861619	42861619	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr19:42861619T>C	uc002otl.4	+	26	5328	c.4693T>C	c.(4693-4695)Tct>Cct	p.S1565P	MEGF8_uc002otm.4_Missense_Mutation_p.S1173P	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	Homo sapiens multiple EGF-like-domains 8 (MEGF8), mRNA.	1632						integral to membrane	calcium ion binding|structural molecule activity			breast(2)|cervix(1)|endometrium(11)|kidney(2)|large_intestine(9)|lung(20)|ovary(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	50		Prostate(69;0.00682)				CCGAGGCCTGTCTCTGCTCCT	0.657000														64			27		0	0	0.00178596	0	0
C3orf19	51244	broad.mit.edu	37	3	14695999	14695999	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr3:14695999G>C	uc003byw.3	+	1	200	c.109G>C	c.(109-111)Gat>Cat	p.D37H	C3orf19_uc010hei.1_Missense_Mutation_p.D37H	NM_016474	NP_057558	Q6PII3	CC019_HUMAN	Homo sapiens chromosome 3 open reading frame 19 (C3orf19), mRNA.	37										endometrium(1)|kidney(1)|large_intestine(4)|lung(7)|prostate(1)	14						ACTTCTAAAAGATTCTGGAGT	0.299000														19			12		0	0	0.000422831	0	0
GPT	2875	broad.mit.edu	37	8	145730807	145730807	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr8:145730807T>C	uc003zdh.4	+	4	897	c.674T>C	c.(673-675)cTg>cCg	p.L225P	GPT_uc011llj.1_Missense_Mutation_p.L225P	NM_005309	NP_005300	P24298	ALAT1_HUMAN	Homo sapiens glutamic-pyruvate transaminase (alanine aminotransferase) (GPT), mRNA.	225					gluconeogenesis	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			central_nervous_system(1)|endometrium(1)|lung(2)|ovary(1)	5	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)		L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CACCGTGCACTGGGCCAGGCG	0.711000														9			3		0	0	0.00024832	0	0
TRIM24	8805	broad.mit.edu	37	7	138145434	138145434	+	Silent	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr7:138145434G>A	uc003vuc.3	+	0	356	c.141G>A	c.(139-141)gcG>gcA	p.A47A	TRIM24_uc003vub.3_Silent_p.A47A|TRIM24_uc022amn.1_5'Flank	NM_015905	NP_056989	O15164	TIF1A_HUMAN	Homo sapiens tripartite motif containing 24 (TRIM24), transcript variant 1, mRNA.	47					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			breast(2)|central_nervous_system(5)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(7)|lung(12)|ovary(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)	40						GCGGCGAGGCGGCCCGGCTCA	0.746000														12			11		0	0	0.000978159	0	0
RAB11A	8766	broad.mit.edu	37	15	66180113	66180113	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr15:66180113G>C	uc002apk.3	+	4	713	c.586G>C	c.(586-588)Gtt>Ctt	p.V196L	RAB11A_uc010ujk.2_3'UTR	NM_004663	NP_004654	P62491	RB11A_HUMAN	Homo sapiens RAB11A, member RAS oncogene family (RAB11A), transcript variant 1, mRNA.	196					cell cycle|cytokinesis|neuron projection development|plasma membrane to endosome transport|protein localization in plasma membrane|small GTPase mediated signal transduction|vesicle-mediated transport	cleavage furrow|plasma membrane|recycling endosome membrane|trans-Golgi network	GTP binding|GTPase activity|syntaxin binding			kidney(1)|large_intestine(2)|lung(1)|prostate(1)	5						CAACAATGTGGTTCCTATTCA	0.428000														100			12		0	0	0.00244969	0	0
LOC100233156	100233156	broad.mit.edu	37	GL000218.1	40744	40744	+	Silent	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chrGL000218.1:40744G>A	uc011mfn.2	-	2	275	c.186C>T	c.(184-186)tcC>tcT	p.S62S	LOC100233156_uc003jah.2_Silent_p.S62S					Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 1, non-coding RNA.																		CCAGGTCCTCGGAGGTGTCGC	0.647000														29			5		0	0	0.000602214	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77528824	77528824	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr1:77528824T>G	uc001dhi.3	+	4	1119	c.944T>G	c.(943-945)tTt>tGt	p.F315C	ST6GALNAC5_uc010ori.2_3'UTR|ST6GALNAC5_uc009wbw.3_Non-coding_Transcript|ST6GALNAC5_uc001dhj.3_5'Flank	NM_030965	NP_112227	Q9BVH7	SIA7E_HUMAN	Homo sapiens ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA.	315					protein glycosylation	integral to Golgi membrane	sialyltransferase activity			endometrium(2)|kidney(1)|large_intestine(6)|lung(5)|pancreas(2)|skin(1)|upper_aerodigestive_tract(1)	18						AATATTCACTTTTTTCAACCA	0.438000														87			42		0	0	0.00285205	0	0
AMOTL1	154810	broad.mit.edu	37	11	94532582	94532582	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr11:94532582T>G	uc001pfb.3	+	2	396	c.226T>G	c.(226-228)Tcc>Gcc	p.S76A	AMOTL1_uc001pfc.3_Missense_Mutation_p.S26A	NM_130847	NP_570899	Q8IY63	AMOL1_HUMAN	Homo sapiens angiomotin like 1 (AMOTL1), mRNA.	76						cytoplasm|tight junction	identical protein binding			autonomic_ganglia(1)|breast(3)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(14)|lung(8)|ovary(1)|pancreas(1)|prostate(1)|urinary_tract(2)	36		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				TAACTTCCACTCCCCAAACTT	0.458000														5			7		0	0	0.000157383	0	0
EVPL	2125	broad.mit.edu	37	17	74005355	74005355	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr17:74005355T>G	uc010wss.1	-	21	4225	c.3997A>C	c.(3997-3999)Aag>Cag	p.K1333Q	EVPL_uc002jqi.2_Missense_Mutation_p.K1311Q|EVPL_uc010wst.1_Missense_Mutation_p.K781Q	NM_001988	NP_001979	Q92817	EVPL_HUMAN	Homo sapiens envoplakin (EVPL), mRNA.	1311	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			breast(4)|central_nervous_system(4)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(8)|lung(14)|ovary(2)|pancreas(2)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)	54						CTCACCGTCTTGGTCTCCACC	0.682000														262			77		0	0	0.000781405	0	0
ZNF385B	151126	broad.mit.edu	37	2	180309603	180309603	+	Splice_Site	SNP	T	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr2:180309603T>A	uc002unn.4	-	9	1801	c.1197_splice	c.e9+1	p.A399_splice	ZNF385B_uc002unj.3_Splice_Site_p.A297_splice|ZNF385B_uc002unl.3_Splice_Site_p.A296_splice|ZNF385B_uc002unk.3_Splice_Site|ZNF385B_uc002unm.3_Splice_Site_p.A323_splice	NM_152520	NP_001106869	Q569K4	Z385B_HUMAN	Homo sapiens zinc finger protein 385B (ZNF385B), transcript variant 1, mRNA.	399						nucleus	nucleic acid binding|zinc ion binding			breast(1)|kidney(1)|large_intestine(6)|lung(11)|ovary(1)|skin(4)|upper_aerodigestive_tract(2)	26			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTAAACTTACTGCTAGAATAC	0.502000														138			62		0	0	0.000781405	0	0
CLU	1191	broad.mit.edu	37	8	27457323	27457323	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr8:27457323C>G	uc003xfy.2	-	6	1318	c.1171G>C	c.(1171-1173)Gac>Cac	p.D391H	CLU_uc003xfw.2_Missense_Mutation_p.D380H|CLU_uc003xfx.2_Missense_Mutation_p.D380H|CLU_uc003xfz.2_Missense_Mutation_p.D380H	NM_001831	NP_001822	P10909	CLUS_HUMAN	Homo sapiens clusterin (CLU), transcript variant 1, mRNA.	380					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(8)|ovary(2)	21		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		TAGTACTGGTCTTCGCCTTGC	0.602000														13			8		0	0	0.000442599	0	0
CLASP1	23332	broad.mit.edu	37	2	122206659	122206659	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr2:122206659C>T	uc002tnc.3	-	16	1951	c.1561G>A	c.(1561-1563)Gca>Aca	p.A521T	CLASP1_uc002tna.3_5'UTR|CLASP1_uc010yyw.2_Non-coding_Transcript|CLASP1_uc002tnb.3_Non-coding_Transcript|CLASP1_uc010yyx.2_Non-coding_Transcript|CLASP1_uc010yyy.2_Non-coding_Transcript|CLASP1_uc010yyz.2_Missense_Mutation_p.A521T|CLASP1_uc010yza.2_Missense_Mutation_p.A521T|CLASP1_uc021vnl.1_Missense_Mutation_p.A521T|CLASP1_uc010yzc.2_Non-coding_Transcript|CLASP1_uc002tng.1_Missense_Mutation_p.A521T	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	Homo sapiens cytoplasmic linker associated protein 1 (CLASP1), transcript variant 1, mRNA.	521					G2/M transition of mitotic cell cycle|axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	Golgi apparatus|centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			NS(2)|breast(1)|central_nervous_system(1)|cervix(2)|endometrium(8)|kidney(4)|large_intestine(8)|lung(19)|ovary(1)|prostate(1)	47	Renal(3;0.0496)					AAGTGCTCTGCTTCTCTGCTG	0.493000														22			10		0	0	0.000442599	0	0
NLRP5	126206	broad.mit.edu	37	19	56539072	56539072	+	Silent	SNP	C	T	T			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr19:56539072C>T	uc002qmj.3	+	6	1473	c.1473C>T	c.(1471-1473)gtC>gtT	p.V491V	NLRP5_uc002qmi.3_Silent_p.V472V	NM_153447	NP_703148	P59047	NALP5_HUMAN	Homo sapiens NLR family, pyrin domain containing 5 (NLRP5), mRNA.	491	NACHT.					mitochondrion|nucleolus	ATP binding			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(8)|ovary(5)|skin(2)|stomach(4)|upper_aerodigestive_tract(2)	25		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGGAGAGCGTCGCCCCCTTCA	0.632000														25			24		0	0	0.00278032	0	0
RND2	8153	broad.mit.edu	37	17	41180521	41180521	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr17:41180521G>A	uc002icn.3	+	4	615	c.508G>A	c.(508-510)Gtc>Atc	p.V170I		NM_005440	NP_005431	P52198	RND2_HUMAN	Homo sapiens Rho family GTPase 2 (RND2), mRNA.	170					small GTPase mediated signal transduction	acrosomal membrane	GTP binding|GTPase activity			large_intestine(1)|skin(1)	2		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.156)		TGAGCGCAGCGTCAGGGATGT	0.622000														71			25		0	0	0.00106085	0	0
PRPF18	8559	broad.mit.edu	37	10	13658431	13658431	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr10:13658431A>G	uc001imp.3	+	8	974	c.826A>G	c.(826-828)Aat>Gat	p.N276D	PRPF18_uc001imq.3_Non-coding_Transcript	NM_003675	NP_003666	Q99633	PRP18_HUMAN	Homo sapiens PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) (PRPF18), mRNA.	276					RNA splicing|mRNA processing	nuclear speck|spliceosomal complex				central_nervous_system(1)|endometrium(5)|large_intestine(5)|lung(5)|prostate(1)	17						GGCCATTGGAAATGCGCCTTG	0.413000														87			34		0	0	0.00170553	0	0
ALPP	250	broad.mit.edu	37	2	233244240	233244240	+	Silent	SNP	A	G	G	rs1130342	byFrequency	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr2:233244240A>G	uc002vsq.3	+	3	492	c.327A>G	c.(325-327)aaA>aaG	p.K109K		NM_001632	NP_001623	P05187	PPB1_HUMAN	Homo sapiens alkaline phosphatase, placental (ALPP), mRNA.	109						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			NS(1)|biliary_tract(1)|endometrium(1)|kidney(4)|large_intestine(2)|liver(1)|lung(10)|ovary(2)	22		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		ATGTAGACAAACATGTGCCAG	0.567000														22			5		0	0	0.000602214	0	0
KAT6A	7994	broad.mit.edu	37	8	41791942	41791942	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr8:41791942T>G	uc010lxb.3	-	17	4340	c.3796A>C	c.(3796-3798)Aag>Cag	p.K1266Q	KAT6A_uc010lxc.3_Missense_Mutation_p.K1266Q|KAT6A_uc003xon.4_Missense_Mutation_p.K1266Q	NM_001099412	NP_006757	Q92794	MYST3_HUMAN	Homo sapiens K(lysine) acetyltransferase 6A (KAT6A), transcript variant 1, mRNA.	1266					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding										tcAGGCTCCTTGGTTTCGGTC	0.582000														8			4		0	0	0.00024832	0	0
FASN	2194	broad.mit.edu	37	17	80053200	80053200	+	Silent	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr17:80053200G>A	uc002kdu.3	-	2	393	c.276C>T	c.(274-276)gaC>gaT	p.D92D		NM_004104	NP_004095	P49327	FAS_HUMAN	Homo sapiens fatty acid synthase (FASN), mRNA.	92	Beta-ketoacyl synthase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	Golgi apparatus|cytosol|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(3)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(12)|prostate(3)|skin(2)|urinary_tract(1)	34	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	ACCCACCTCCGTCCACGATGG	0.597000														72			9		0	0	0.00136819	0	0
DDX60L	91351	broad.mit.edu	37	4	169337906	169337906	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr4:169337906G>A	uc021xuh.1	-	18	2763	c.2653C>T	c.(2653-2655)Ctc>Ttc	p.L885F	DDX60L_uc003irq.4_Missense_Mutation_p.L885F|DDX60L_uc003irr.1_Missense_Mutation_p.L885F|DDX60L_uc003irs.1_Missense_Mutation_p.L580F	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like (DDX60L), mRNA.	885	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding	p.E884E(1)		breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|lung(23)|ovary(2)|prostate(1)|skin(1)|stomach(1)	43		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		ACAAGGAGGAGCTCCCAAAAT	0.343000														64			30		0	0	0.00178596	0	0
DUS4L	11062	broad.mit.edu	37	7	107216872	107216872	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr7:107216872T>A	uc003veh.3	+	6	874	c.541T>A	c.(541-543)Tca>Aca	p.S181T	DUS4L_uc011klw.2_Non-coding_Transcript|DUS4L_uc011klx.2_Missense_Mutation_p.S60T|DUS4L_uc022ajw.1_Missense_Mutation_p.S60T|DUS4L_uc010ljl.3_Missense_Mutation_p.S91T	NM_181581	NP_853559	O95620	DUS4L_HUMAN	Homo sapiens dihydrouridine synthase 4-like (S. cerevisiae) (DUS4L), mRNA.	181					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			breast(1)|endometrium(1)|large_intestine(2)|lung(2)|skin(1)|stomach(1)	8						AACAGGAGTTTCATGGATTAC	0.353000														68			27		0	0	0.00106085	0	0
MAP3K1	4214	broad.mit.edu	37	5	56177037	56177037	+	Silent	SNP	T	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr5:56177037T>A	uc003jqw.4	+	12	2808	c.2307T>A	c.(2305-2307)ccT>ccA	p.P769P		NM_005921	NP_005912	Q13233	M3K1_HUMAN	Homo sapiens mitogen-activated protein kinase kinase kinase 1 (MAP3K1), mRNA.	769					MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|cellular response to mechanical stimulus|innate immune response|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			NS(1)|breast(19)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(8)|lung(11)|ovary(1)|skin(3)|urinary_tract(1)	57		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		TGGAATTTCCTGCTGAATTTT	0.348000														44			20		0	0	0.00229938	0	0
CLDN7	1366	broad.mit.edu	37	17	7163815	7163815	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr17:7163815A>C	uc002gfm.4	-	3	1416	c.514T>G	c.(514-516)Tct>Gct	p.S172A	CLDN7_uc010cmc.3_Silent_p.G143G|CLDN7_uc002gfn.4_Missense_Mutation_p.S172A	NM_001307	NP_001298	O95471	CLD7_HUMAN	Homo sapiens claudin 7 (CLDN7), transcript variant 1, mRNA.	172					calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity	p.S172A(2)		kidney(1)|large_intestine(2)|lung(1)|ovary(1)|prostate(1)	6						ACTAGGGCAGACCCTGCCCAG	0.572000														14			7		0	0	0.000958276	0	0
ZNF536	9745	broad.mit.edu	37	19	31039693	31039693	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr19:31039693C>T	uc002nsu.1	+	3	3305	c.3167C>T	c.(3166-3168)tCg>tTg	p.S1056L	ZNF536_uc010edd.1_Missense_Mutation_p.S1056L	NM_014717	NP_055532	O15090	ZN536_HUMAN	Homo sapiens zinc finger protein 536 (ZNF536), mRNA.	1056					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			NS(3)|breast(6)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(22)|lung(119)|ovary(7)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(3)	182	Esophageal squamous(110;0.0834)					CTGCTGCCCTCGTTACAATCA	0.532000														89			6		0	0	0.00198382	0	0
KCNQ2	3785	broad.mit.edu	37	20	62078166	62078166	+	Silent	SNP	G	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr20:62078166G>C	uc002yey.1	-	1	498	c.321C>G	c.(319-321)ctC>ctG	p.L107L	KCNQ2_uc002yez.1_Silent_p.L107L|KCNQ2_uc002yfa.1_Silent_p.L107L|KCNQ2_uc002yfb.1_Silent_p.L107L|KCNQ2_uc011aax.1_Silent_p.L107L|KCNQ2_uc002yfc.1_Silent_p.L107L	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	Homo sapiens potassium voltage-gated channel, KQT-like subfamily, member 2 (KCNQ2), transcript variant 1, mRNA.	107					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			biliary_tract(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(4)|liver(1)|lung(30)|ovary(2)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	65	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CAGACAGCACGAGGCAGGAGA	0.632000														88			41		0	0	0.00285205	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr21:14439208A>G	uc002yja.4	+	9		c.2726A>G								Homo sapiens ankyrin repeat domain 30B pseudogene 2 (ANKRD30BP2), non-coding RNA.																		AAGAGAAGAAATGCCAATATA	0.299000														27			4		0	0	0.00024832	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73066676	73066676	+	Silent	SNP	C	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr11:73066676C>G	uc001otu.3	+	3	3573	c.3552C>G	c.(3550-3552)gcC>gcG	p.A1184A		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17), mRNA.	1184	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(15)|ovary(2)|skin(2)	32						CGAGGCCTGCCTTTCTCAAGT	0.557000														37			19		0	0	0.00047179	0	0
POTED	317754	broad.mit.edu	37	GL000213.1	138774	138774	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chrGL000213.1:138774C>G	uc011mfl.1	-	0	562	c.514G>C	c.(514-516)Gaa>Caa	p.E172Q		NM_174981	NP_778146	Q86YR6	POTED_HUMAN	Homo sapiens POTE ankyrin domain family, member D (POTED), mRNA.	172			E -> Q.			plasma membrane				central_nervous_system(1)|large_intestine(10)|liver(2)|lung(8)|ovary(4)|pancreas(1)|prostate(1)|skin(5)|stomach(1)	33						TACCTCTTTTCCTTGTCCCTC	0.582000														54			4		0	0	0.00116845	0	0
NCOR1	9611	broad.mit.edu	37	17	15935762	15935762	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr17:15935762G>C	uc002gpo.3	-	45	7440	c.7171C>G	c.(7171-7173)Cgg>Ggg	p.R2391G	NCOR1_uc002gpn.3_Missense_Mutation_p.R2288G|NCOR1_uc002gpl.3_Missense_Mutation_p.R405G|NCOR1_uc002gpm.3_Missense_Mutation_p.R910G|NCOR1_uc010vwb.2_Missense_Mutation_p.R975G|NCOR1_uc010coy.3_Missense_Mutation_p.R1299G	NM_006311	NP_006302	O75376	NCOR1_HUMAN	Homo sapiens nuclear receptor corepressor 1 (NCOR1), transcript variant 1, mRNA.	2391	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding	p.R2391W(2)		NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(17)|lung(26)|ovary(1)|prostate(7)|skin(2)|upper_aerodigestive_tract(6)|urinary_tract(10)	107				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		CTGAGCATCCGCATAGTCAGA	0.468000														129			34		0	0	0.00111076	0	0
DNAJC16	23341	broad.mit.edu	37	1	15890499	15890500	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr1:15890499_15890500delGA	uc001aws.3	+	9	1534_1535	c.1414_1415delGA	c.(1414-1416)gagfs	p.E472fs	DNAJC16_uc001awr.1_Frame_Shift_Del_p.E472fs|DNAJC16_uc001awt.3_Frame_Shift_Del_p.E160fs|DNAJC16_uc001awu.3_Non-coding_Transcript	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 16 (DNAJC16), mRNA.	472					cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(4)|lung(7)|urinary_tract(1)	18		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GATTGGGAGTGAGAGTGACAAA	0.465													---	220	---	---	86	---					
TMEM131	23505	broad.mit.edu	37	2	98427639	98427639	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr2:98427639delT	uc002syh.4	-	17	2149	c.1920delA	c.(1918-1920)aaafs	p.K640fs		NM_015348	NP_056163	Q92545	TM131_HUMAN	Homo sapiens transmembrane protein 131 (TMEM131), mRNA.	640						integral to membrane				NS(1)|autonomic_ganglia(1)|breast(3)|central_nervous_system(4)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(7)|lung(23)|ovary(4)|prostate(1)|skin(1)|stomach(1)	57						TCCCCTCTAATTTTTTTGCAG	0.393													---	426	---	---	10	---					
CUBN	8029	broad.mit.edu	37	10	16957909	16957910	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr10:16957909_16957910insA	uc001ioo.3	-	45	7172_7173	c.7120_7121insT	c.(7120-7122)tatfs	p.Y2374fs		NM_001081	NP_001072	O60494	CUBN_HUMAN	Homo sapiens cubilin (intrinsic factor-cobalamin receptor) (CUBN), mRNA.	2374	CUB 17.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity	p.H2373Q(1)		breast(8)|central_nervous_system(4)|cervix(1)|endometrium(18)|haematopoietic_and_lymphoid_tissue(3)|kidney(12)|large_intestine(42)|liver(1)|lung(107)|ovary(9)|pancreas(2)|prostate(3)|skin(9)|stomach(3)|upper_aerodigestive_tract(11)|urinary_tract(8)	241					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GATGGTGAGATAGTGTCCAGAG	0.436													---	89	---	---	51	---					
PTPRCAP	5790	broad.mit.edu	37	11	67203274	67203287	+	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	-	-	rs140707407		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr11:67203274_67203287delGCAAAGGCGTGCAG	uc001oli.1	-	1	601_614	c.538_551delCTGCACGCCTTTGC	c.(538-552)ctgcacgcctttgctfs	p.L180fs		NM_005608	NP_005599	Q14761	PTCA_HUMAN	Homo sapiens protein tyrosine phosphatase, receptor type, C-associated protein (PTPRCAP), mRNA.	180					defense response	integral to membrane|plasma membrane				skin(1)|upper_aerodigestive_tract(1)	2			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			TGCGCTGCCAGCAAAGGCGTGCAGGTCACTCAGC	0.682													---	27	---	---	8	---					
CD320	51293	broad.mit.edu	37	19	8373241	8373248	+	Splice_Site	DEL	GCGCGGGG	-	-			TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	g.chr19:8373241_8373248delGCGCGGGG	uc002mjj.2	-	1	1	c.-65_splice	c.e1-1		CD320_uc002mjl.2_Splice_Site|CD320_uc002mjk.2_Splice_Site	NM_016579	NP_057663	Q9NPF0	CD320_HUMAN	Homo sapiens CD320 molecule (CD320), transcript variant 1, mRNA.						regulation of cell growth	endoplasmic reticulum|integral to membrane	growth factor activity			central_nervous_system(1)|cervix(1)|endometrium(2)|large_intestine(2)	6						GCACGCGCACGCGCGGGGTTGGGGCGGG	0.673													---	5	---	---	4	---					
