writing sdrf to PAAD.merger.sdrf.txt

------------------------------------------------------------------
2013-08-17 15:44:52.262571
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/PAAD/3972979/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/PAAD/3972979/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-6879-01.wig.txt
('', None)
0
8605de885300cdb37fd7dd180598a539
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-6880-01.wig.txt
('', None)
0
388d06c13c0aab631978da9d83255b46
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-7273-01.wig.txt
('', None)
0
c019b935476207a01ded0a42d73ac556
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-7276-01.wig.txt
('', None)
0
937eddee6c18947cdfd326a822b300d9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-A44G-01.wig.txt
('', None)
0
f0f008e2abd534359a276f5bc1aab12b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-F2-A44H-01.wig.txt
('', None)
0
b98fd3b4d6644fe03777b0a509c3a1b5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FB-A4P5-01.wig.txt
('', None)
0
530608fe2b703b4a762ed025cb3e3cc0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FB-A4P6-01.wig.txt
('', None)
0
f1b0fa832978def92ded2a82a95b9a88
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FB-A545-01.wig.txt
('', None)
0
553f60a7f4552dee65e3afaa33ab1957
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5919-01.wig.txt
('', None)
0
ba3e6b82cbcc6f4a0cd9a19ff5ad8ed9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5920-01.wig.txt
('', None)
0
6ee0df91a0dc19cacedbcee2b4a12387
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5921-01.wig.txt
('', None)
0
9bbf660084679149975d23da0ede6b2a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5922-01.wig.txt
('', None)
0
783d86e02c06d01af61e83d9582ec20b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5923-01.wig.txt
('', None)
0
7cbb677b83806e41f74197f525819c6f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5924-01.wig.txt
('', None)
0
11cee9c2cb54ea35a276eb7ce3d335b5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FZ-5926-01.wig.txt
('', None)
0
25df279baf18c5ad4138f20fd66c7241
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-H6-A45N-01.wig.txt
('', None)
0
573a8fefc17e95359345d9d0d69a2f6a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HV-A5A3-01.wig.txt
('', None)
0
f9a97eb5d7ad13b099d8139aceb4c1ee
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HV-A5A4-01.wig.txt
('', None)
0
4956bf0e73e0de4ece7bd5b1386ea1b1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HV-A5A5-01.wig.txt
('', None)
0
7e618a7227553adcaeac104c4209e626
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HV-A5A6-01.wig.txt
('', None)
0
a640d4dede612aeca85e05d0888395de
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7289-01.wig.txt
('', None)
0
78ed64484b5721e42c6b19c0898b59a8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7918-01.wig.txt
('', None)
0
7608a5be4087f5f8c517c873e61d2c59
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7920-01.wig.txt
('', None)
0
34c15bd286f4b75e25617feaf64d36b8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7922-01.wig.txt
('', None)
0
9e089b486d6512b21b252361caf63f13
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7923-01.wig.txt
('', None)
0
4491e5852bb70a2f04cd9ae6bd9a9d3c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7924-01.wig.txt
('', None)
0
4968c82380776f723bb27ddc0496af59
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7925-01.wig.txt
('', None)
0
6955bd2169453dfa6af29e45ea3dff6b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-7926-01.wig.txt
('', None)
0
fc4e01e9c4941bd109df53a48272df73
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8001-01.wig.txt
('', None)
0
4f617c4aca5bd93d9c31314cfc78e70c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8002-01.wig.txt
('', None)
0
c2ce62ee3a4689f9a905bb61412ea95b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8003-01.wig.txt
('', None)
0
8a85dfa078e48c619c3b4ed31019d603
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8005-01.wig.txt
('', None)
0
43f3cf836026b8a8cc402d2358cf05ce
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8315-01.wig.txt
('', None)
0
0f16ed2274379124122ca9d6221d0a05
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8636-01.wig.txt
('', None)
0
b5c5936f413304cfa5630505fbfe9f76
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-8638-01.wig.txt
('', None)
0
f8a74650aca437e0f7730a63d08c1223
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-A49G-01.wig.txt
('', None)
0
5b7d5f4b512fbea6ae591613984498a7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-A49H-01.wig.txt
('', None)
0
dfb525fac3779f330f444da92bd84faf
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-A4BH-01.wig.txt
('', None)
0
776bcf17ffda4034aaf9a33b9c5d6cf9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-HZ-A4BK-01.wig.txt
('', None)
0
eb74db4615c14ea5bc0f2cbf1d5e93ef
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7644-01.wig.txt
('', None)
0
18c5b3d7370dffef4fc2171ec5b91a9e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7645-01.wig.txt
('', None)
0
42494205df842d31972930c382f8ec4a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7646-01.wig.txt
('', None)
0
0ddd40348cd0ed37bbe25aae90848d2f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7647-01.wig.txt
('', None)
0
ce18c43c9c77a9be130a7364337e4b3e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7649-01.wig.txt
('', None)
0
76205eb8d3aea894b450992657f61ec6
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7651-01.wig.txt
('', None)
0
e5b995f8d98bfa2decc12d4728cbfd7e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7652-01.wig.txt
('', None)
0
90caf35ecfd511fa3daccf5f9b681de7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7654-01.wig.txt
('', None)
0
4fcd5ef127205abd8b94969816c41d14
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7885-01.wig.txt
('', None)
0
78d3c05d2e0f98b73612a871d5d2290d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7886-01.wig.txt
('', None)
0
04fe962baf7c7a15d37099a5292f5b32
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7887-01.wig.txt
('', None)
0
c2161f5b5da73083beb5749947dc1942
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7889-01.wig.txt
('', None)
0
9d6200fed882dcad72df1b43024ca36e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7890-01.wig.txt
('', None)
0
6d34fc6f9bf9213eda4627022b2cab65
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7891-01.wig.txt
('', None)
0
27ae1de07085f039392067149115776c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7893-01.wig.txt
('', None)
0
3ac7fd906fa315b3d60136944e19478d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IB-7897-01.wig.txt
('', None)
0
28ec5f55524e6b8b16fc326850ee7952
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/paad/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_PAAD.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-M8-A5N4-01.wig.txt
('', None)
0
2ec4f16d9acc99b2d6a4265d7cce79bf
It is not in the dictionary
Make a softlink is done.


