Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AARS2	57505	broad.mit.edu	37	6	44274243	44274243	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARSD1	80755	broad.mit.edu	37	17	41131099	41131099	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121718105	121718105	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107571867	107571867	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66883575	66883575	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123430863	123430863	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48119701	48119701	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95724037	95724037	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD3	171586	broad.mit.edu	37	18	19263385	19263385	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD5	91452	broad.mit.edu	37	10	27512279	27512279	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACD	65057	broad.mit.edu	37	16	67692308	67692308	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER2	340485	broad.mit.edu	37	9	19435085	19435085	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER2	340485	broad.mit.edu	37	9	19446453	19446453	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61559074	61559074	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32424685	32424685	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP1	52	broad.mit.edu	37	2	277226	277226	+	Splice_Site	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	141006210	141006210	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106234219	106234219	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236312	106236312	+	RNA	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106866502	106866502	+	RNA	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP2	55803	broad.mit.edu	37	17	29283319	29283319	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78392424	78392424	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132002591	132002591	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGA	175	broad.mit.edu	37	4	178358704	178358704	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109671950	109671950	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135763829	135763829	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105415206	105415206	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105417681	105417681	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62300197	62300197	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96949491	96949491	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP8	10270	broad.mit.edu	37	19	15469932	15469932	+	Intron	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91737903	91737903	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58247323	58247323	+	3'UTR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5129756	5129756	+	Silent	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH4	54784	broad.mit.edu	37	7	102100302	102100302	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112625797	112625797	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278661	114278661	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKLE2	23141	broad.mit.edu	37	12	133317938	133317939	+	Intron	INS	-	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13B	124930	broad.mit.edu	37	17	27936421	27936421	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27303585	27303585	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640700	99640700	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4779940	4779940	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124724863	124724863	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150502606	150502606	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOH	350	broad.mit.edu	37	17	64224325	64224325	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL3	80833	broad.mit.edu	37	22	36541433	36541433	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP1	358	broad.mit.edu	37	7	30963178	30963178	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35235361	35235361	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68112721	68112721	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36272255	36272255	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34625717	34625717	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART5	116969	broad.mit.edu	37	11	3661475	3661475	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155448829	155448829	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPRV1	151516	broad.mit.edu	37	2	70188284	70188284	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161833091	161833091	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28914369	28914369	+	Silent	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5L	10632	broad.mit.edu	37	11	118279753	118279753	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52541044	52541044	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42416783	42416783	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXIN1	8312	broad.mit.edu	37	16	354475	354475	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND3	57673	broad.mit.edu	37	6	107420645	107420645	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD2	23299	broad.mit.edu	37	9	95481798	95481798	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140481402	140481402	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40492620	40492620	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf119	79892	broad.mit.edu	37	10	121591603	121591603	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf25	220979	broad.mit.edu	37	10	45496131	45496131	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf26	54838	broad.mit.edu	37	10	104573073	104573073	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf46	120534	broad.mit.edu	37	11	30352809	30352809	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf94	143678	broad.mit.edu	37	11	45928262	45928262	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922224	24922224	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90128895	90128895	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf91	283951	broad.mit.edu	37	16	1470042	1470042	+	3'UTR	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44237005	44237005	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55161185	55161185	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26624954	26624954	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf44	80304	broad.mit.edu	37	2	24260579	24260579	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf54	79919	broad.mit.edu	37	2	241826542	241826542	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf19	51244	broad.mit.edu	37	3	14712462	14712462	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89927177	89927177	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97555120	97555120	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	50212231	50212231	+	Intron	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121098634	121098634	+	Silent	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2614019	2614019	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181759695	181759695	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49070609	49070609	+	Intron	DEL	G	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG1	786	broad.mit.edu	37	17	65052056	65052056	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN1	823	broad.mit.edu	37	11	64973314	64973314	+	Intron	DEL	A	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARM1	10498	broad.mit.edu	37	19	11022908	11022908	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1A	54862	broad.mit.edu	37	19	14024056	14024056	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219896286	219896286	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128457828	128457828	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94772534	94772534	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94818718	94818718	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNK	8812	broad.mit.edu	37	14	99962098	99962098	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99	4267	broad.mit.edu	37	X	2640679	2640679	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC37	11140	broad.mit.edu	37	19	10503746	10503746	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227441855	227441855	+	Silent	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537720	24537720	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26906156	26906156	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202687730	202687730	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202737000	202737000	+	Splice_Site	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72667133	72667133	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPI	2491	broad.mit.edu	37	X	100416449	100416449	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13049425	13049425	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34082306	34082306	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	639206	639206	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50830338	50830338	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50901652	50901652	+	Intron	SNP	G	C	C	rs80150524		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240071333	240071333	+	Silent	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233404296	233404296	+	5'Flank	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46799028	46799029	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201718134	201718134	+	Silent	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155234395	155234395	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72238504	72238504	+	Silent	SNP	C	T	T	rs148458615	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6L	246175	broad.mit.edu	37	4	78652569	78652569	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205041749	205041749	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146825955	146825955	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189854795	189854795	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10108655	10108655	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238249550	238249550	+	Missense_Mutation	SNP	G	A	A	rs142851023	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLQ	8292	broad.mit.edu	37	3	15515524	15515524	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130294947	130294948	+	Intron	INS	-	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28766191	28766191	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC3	64784	broad.mit.edu	37	15	91172586	91172586	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34189951	34189951	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114290863	114290863	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1D	1453	broad.mit.edu	37	17	80223453	80223453	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80101241	80101241	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	G	G	rs121913412		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11564973	11564973	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16955722	16955722	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf58	254158	broad.mit.edu	37	X	23945586	23945586	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R2	51700	broad.mit.edu	37	11	7687611	7687617	+	Intron	DEL	CAGAGAC	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52788039	52788039	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685831	125685831	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886032	88886032	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49231355	49231355	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC6	64798	broad.mit.edu	37	8	121019198	121019198	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137076124	137076124	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137128894	137128894	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHDH	27294	broad.mit.edu	37	19	49447491	49447491	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9684874	9684874	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182852799	182852799	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3977814	3977814	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32563307	32563307	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7636522	7636522	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7640477	7640477	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7644211	7644211	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7646444	7646444	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11597208	11597208	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98088417	98088417	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111617307	111617307	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111634226	111634226	+	Silent	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117647510	117647510	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45387213	45387213	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYDC2	84332	broad.mit.edu	37	10	82126613	82126613	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46956785	46956785	+	5'UTR	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43933318	43933318	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31489172	31489172	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AD	84285	broad.mit.edu	37	11	65766818	65766818	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B5	8893	broad.mit.edu	37	3	183855277	183855277	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G2	1982	broad.mit.edu	37	11	10821641	10821641	+	Silent	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENGASE	64772	broad.mit.edu	37	17	77073539	77073539	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120570028	120570028	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L1	54869	broad.mit.edu	37	19	55591235	55591235	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC2	2068	broad.mit.edu	37	19	45867916	45867916	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC3	2071	broad.mit.edu	37	2	128018852	128018852	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN1	2081	broad.mit.edu	37	17	62130599	62130599	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17046694	17046694	+	5'Flank	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158555808	158555808	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93113127	93113127	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6266700	6266700	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120AOS	158293	broad.mit.edu	37	9	96215112	96215112	+	5'UTR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM136A	84908	broad.mit.edu	37	2	70528037	70528037	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93159718	93159718	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45490359	45490359	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83E	54854	broad.mit.edu	37	19	49116501	49116501	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207634985	207634985	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187627769	187627769	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534374	92534374	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126240611	126240611	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92357437	92357437	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937008	15937008	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157509129	157509129	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108133869	108133869	+	5'UTR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123247480	123247481	+	Intron	INS	-	A	A	rs67358011		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84603711	84603711	+	5'UTR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28903894	28903894	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12601557	12601557	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRS3	10817	broad.mit.edu	37	6	41743230	41743230	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL1	11167	broad.mit.edu	37	3	120115919	120115919	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117712384	117712384	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAA	2548	broad.mit.edu	37	17	78085902	78085902	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160972192	160972192	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30842577	30842577	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4872447	4872447	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GANC	2595	broad.mit.edu	37	15	42621684	42621684	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30662100	30662100	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34077194	34077197	+	Frame_Shift_Del	DEL	CCTC	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153831142	153831142	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109116083	109116083	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120607839	120607839	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI2	2665	broad.mit.edu	37	10	5855243	5855243	+	5'UTR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK2	2712	broad.mit.edu	37	4	80329119	80329119	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS2	84662	broad.mit.edu	37	16	4382451	4382451	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183908081	183908081	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB5	10681	broad.mit.edu	37	15	52418243	52418243	+	Splice_Site	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6L5	374650	broad.mit.edu	37	15	85056003	85056003	+	RNA	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94482698	94482698	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPCPD1	56261	broad.mit.edu	37	20	5539550	5539550	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPI	2821	broad.mit.edu	37	19	34868423	34868423	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPI	2821	broad.mit.edu	37	19	34868425	34868425	+	Silent	SNP	C	T	T	rs11548997		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPLD1	2822	broad.mit.edu	37	6	24475328	24475328	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135433623	135433623	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR132	29933	broad.mit.edu	37	14	105517957	105517957	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR137	56834	broad.mit.edu	37	11	64056845	64056845	+	3'UTR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175301048	175301048	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101909099	101909099	+	Silent	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93225765	93225765	+	Translation_Start_Site	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37271696	37271696	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13769645	13769645	+	Intron	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173585	126173585	+	Silent	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130760993	130760993	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33523460	33523460	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33523462	33523462	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27487750	27487750	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242192195	242192195	+	Intron	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93238018	93238018	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124793377	124793377	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89334306	89334306	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97195133	97195133	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858806	149858806	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176323031	176323031	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100249801	100249801	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12B	116835	broad.mit.edu	37	20	3726567	3726567	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA4	203100	broad.mit.edu	37	8	38839335	38839335	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HVCN1	84329	broad.mit.edu	37	12	111099152	111099152	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52883108	52883108	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129183488	129183488	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99478247	99478247	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154422396	154422396	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPACT	55364	broad.mit.edu	37	18	22010467	22010467	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143081533	143081533	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15261954	15261954	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153713683	153713683	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS9	55756	broad.mit.edu	37	8	28654152	28654152	+	Silent	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25415905	25415905	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCE	23288	broad.mit.edu	37	7	2632920	2632920	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	248332	248332	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISX	91464	broad.mit.edu	37	22	35463277	35463277	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145525061	145525061	+	5'UTR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15561227	15561227	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1BP1	9270	broad.mit.edu	37	2	9552681	9552681	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7755192	7755192	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52848161	52848161	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123947015	123947015	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170366206	170366206	+	5'Flank	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915637	119915637	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK6	9424	broad.mit.edu	37	19	38817502	38817502	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62073780	62073780	+	Silent	SNP	C	T	T	rs148654588		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS2	3788	broad.mit.edu	37	8	99440859	99440859	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602840	10602840	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36641892	36641892	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58896211	58896211	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0895	23366	broad.mit.edu	37	7	36366473	36366473	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1012	22878	broad.mit.edu	37	18	29437671	29437671	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95521993	95521993	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1644	85352	broad.mit.edu	37	22	44692714	44692714	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233514864	233514864	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111583650	111583652	+	Intron	DEL	CTT	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10436630	10436630	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39711857	39711857	+	Intron	DEL	T	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39512386	39512386	+	Silent	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129736765	129736765	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNB1	3837	broad.mit.edu	37	17	45730302	45730302	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38926018	38926018	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT4	3851	broad.mit.edu	37	12	53202129	53202129	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53012171	53012171	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52628896	52628896	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP15-1	254950	broad.mit.edu	37	21	31812989	31812989	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25950344	25950344	+	3'UTR	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129601110	129601110	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129762061	129762061	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112437004	112437004	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112522902	112522902	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	33700318	33700318	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50829374	50829374	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHAL6A	160287	broad.mit.edu	37	11	18497989	18497989	+	Silent	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG1	79165	broad.mit.edu	37	19	54663367	54663367	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189675648	189675648	+	3'UTR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40197357	40197357	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54751042	54751042	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMK2	3985	broad.mit.edu	37	22	31658126	31658126	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7C	55327	broad.mit.edu	37	11	27528274	27528274	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15558463	15558463	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197703465	197703465	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19879090	19879090	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27539922	27539922	+	5'UTR	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC595101	595101	broad.mit.edu	37	16	30347942	30347942	+	5'Flank	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75812602	75812602	+	3'UTR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL2	4017	broad.mit.edu	37	8	23191185	23191185	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOXL4	84171	broad.mit.edu	37	10	100021845	100021845	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82409320	82409320	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82432241	82432241	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62863911	62863911	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42355929	42355929	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140992396	140992396	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC47	57470	broad.mit.edu	37	1	3699302	3699302	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70541760	70541760	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68686790	68686790	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD2L1BP	9587	broad.mit.edu	37	6	43604479	43604479	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA8	4107	broad.mit.edu	37	X	149013194	149013194	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993904	140993906	+	In_Frame_Del	DEL	CCC	-	-	rs176040	byFrequency	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35803291	35803291	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210557842	210557842	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210570428	210570428	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164534638	164534638	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186968386	186968386	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3845224	3845224	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90438775	90438775	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90503650	90503650	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	84025049	84025049	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED10	84246	broad.mit.edu	37	5	6378737	6378737	+	5'Flank	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47912846	47912846	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46777134	46777134	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141765661	141765661	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23306043	23306043	+	Missense_Mutation	SNP	G	A	A	rs17884647		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44644771	44644771	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L1	10933	broad.mit.edu	37	15	79186452	79186452	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED1	758	broad.mit.edu	37	22	43831155	43831155	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL15	29088	broad.mit.edu	37	8	55050033	55050033	+	Intron	DEL	T	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151420809	151420809	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68483453	68483453	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100518415	100518415	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1078320	1078320	+	Missense_Mutation	SNP	G	A	A	rs72652894		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1265896	1265896	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1273700	1273700	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47364614	47364614	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15813432	15813432	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50720868	50720868	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23858486	23858486	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23900998	23900998	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10298621	10298621	+	Silent	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123366001	123366001	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA15	80155	broad.mit.edu	37	4	140270690	140270690	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGPA	51172	broad.mit.edu	37	16	5075361	5075362	+	3'UTR	DNP	CC	AA	AA			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78562616	78562616	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA12	55967	broad.mit.edu	37	12	95365555	95365555	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45169914	45169914	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIA	4792	broad.mit.edu	37	14	35873088	35873088	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLE1	54475	broad.mit.edu	37	17	33462471	33462471	+	Splice_Site	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7982783	7982784	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95062098	95062098	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP14	8602	broad.mit.edu	37	4	2944170	2944170	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89133582	89133582	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	73012878	73012878	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32780752	32780752	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118468	84118468	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C2	22978	broad.mit.edu	37	10	104866518	104866518	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF4	4909	broad.mit.edu	37	19	49564715	49564715	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCKS1	64710	broad.mit.edu	37	1	205689671	205689671	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT2	318	broad.mit.edu	37	9	34339067	34339067	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69082675	69082675	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP43	348995	broad.mit.edu	37	6	150064778	150064778	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131262373	131262373	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47776233	47776233	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A4	283297	broad.mit.edu	37	11	6898297	6898297	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1A1	8383	broad.mit.edu	37	17	3119530	3119530	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG2	338755	broad.mit.edu	37	11	6789999	6789999	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247615310	247615310	+	5'Flank	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695011	247695011	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2J3	442186	broad.mit.edu	37	6	29080183	29080183	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285304	248285304	+	5'Flank	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366369	248366369	+	5'Flank	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136023	55136023	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22134212	22134213	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20444056	20444057	+	Frame_Shift_Ins	INS	-	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230488	56230488	+	Silent	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C1	390321	broad.mit.edu	37	12	55714574	55714574	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21747192	21747192	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP2	92736	broad.mit.edu	37	17	72921880	72921880	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY14	9934	broad.mit.edu	37	3	150932033	150932033	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC4	8761	broad.mit.edu	37	1	40035231	40035231	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25448566	25448566	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25052097	25052097	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX2	5089	broad.mit.edu	37	6	32156269	32156270	+	Missense_Mutation	DNP	CG	GA	GA			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589829	140589829	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140777700	140777700	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72288643	72288643	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72290425	72290425	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144902975	144902975	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFA	5154	broad.mit.edu	37	7	552037	552037	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49753774	49753774	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58330098	58330098	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45289361	45289361	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77538221	77538221	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39535150	39535151	+	5'Flank	INS	-	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9782275	9782275	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508499	106508499	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68382049	68382049	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2155892	2155892	+	Silent	SNP	A	G	G	rs149467954	by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42036400	42036400	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28766143	28766143	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19501350	19501350	+	Silent	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204228701	204228702	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4	25894	broad.mit.edu	37	16	67314355	67314355	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC1	57125	broad.mit.edu	37	17	37239790	37239790	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72158704	72158704	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODXL2	50512	broad.mit.edu	37	3	127358110	127358110	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODXL2	50512	broad.mit.edu	37	3	127381120	127381120	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2G	5436	broad.mit.edu	37	11	62532822	62532822	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43159972	43159972	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70184483	70184483	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70185240	70185240	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52719224	52719224	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3B	28227	broad.mit.edu	37	X	307653	307653	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75198098	75198098	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11035557	11035557	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAA1	5562	broad.mit.edu	37	5	40764982	40764982	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23847552	23847552	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35065370	35065370	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3701558	3701558	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45244880	45244880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10390337	10390337	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN1	5663	broad.mit.edu	37	14	73653563	73653563	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97342402	97342402	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8465635	8465635	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220164554	220164554	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUF60	22827	broad.mit.edu	37	8	144902889	144902889	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVT1	5820	broad.mit.edu	37	8	129061335	129061335	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1652006	1652006	+	Silent	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXMP4	11264	broad.mit.edu	37	20	32302524	32302525	+	Missense_Mutation	DNP	CC	AA	AA	rs142263400		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21614019	21614019	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB7L1	8934	broad.mit.edu	37	1	205740776	205740776	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD17	5884	broad.mit.edu	37	5	68670478	68670478	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34824141	34824141	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22259492	22259492	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM12	10137	broad.mit.edu	37	20	34240421	34240421	+	3'UTR	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114358414	114358414	+	Splice_Site	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM25	58517	broad.mit.edu	37	14	73554904	73554904	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50098365	50098365	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101105679	101105679	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182640801	182640801	+	5'UTR	SNP	C	A	A	rs141271906	by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEBL1	121268	broad.mit.edu	37	12	49462658	49462658	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8159825	8159825	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	90332672	90332672	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740078	124740078	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS3A	6189	broad.mit.edu	37	4	152021755	152021755	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78857325	78857325	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67697257	67697257	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32366242	32366242	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39023335	39023335	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774276	237774276	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33941470	33941470	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A13	6284	broad.mit.edu	37	1	153598847	153598847	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART1	9092	broad.mit.edu	37	11	65732040	65732040	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARB2	950	broad.mit.edu	37	4	77116918	77116918	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCLT1	132320	broad.mit.edu	37	4	129925026	129925026	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML4	256380	broad.mit.edu	37	6	108041921	108041921	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151138584	151138584	+	5'UTR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50307515	50307515	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192700900	192700900	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24C	9632	broad.mit.edu	37	10	75526064	75526064	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61G	23480	broad.mit.edu	37	7	54823477	54823477	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91949686	91949686	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94909287	94909287	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95034512	95034512	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135203286	135203286	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198269790	198269790	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42088436	42088436	+	Silent	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67101732	67101732	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK196	84197	broad.mit.edu	37	8	42977285	42977285	+	Silent	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91660680	91660680	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72866403	72866403	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM1	134549	broad.mit.edu	37	5	132160138	132160138	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43329695	43329695	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25917311	25917311	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A1	6574	broad.mit.edu	37	2	113414815	113414815	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19566233	19566233	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234367568	234367568	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162735721	162735721	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890801	32890801	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110735252	110735252	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402034	40402034	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130918865	130918865	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTN	6525	broad.mit.edu	37	22	31486831	31486831	+	Silent	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25475890	25475890	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96949642	96949642	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP40	9410	broad.mit.edu	37	1	31769485	31769485	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101608886	101608886	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97174268	97174269	+	Nonsense_Mutation	DNP	CC	AA	AA	rs11188316	byFrequency;by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108431055	108431055	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16010477	16010477	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA2	9825	broad.mit.edu	37	20	48523254	48523254	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR4	163778	broad.mit.edu	37	1	152944717	152944717	+	3'UTR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158584068	158584068	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596512	158596512	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596650	158596650	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13053003	13053003	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST5	6764	broad.mit.edu	37	11	8720469	8720469	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC2	10610	broad.mit.edu	37	17	74570505	74570505	+	Silent	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44268875	44268875	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120760697	120760697	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46319006	46319006	+	Missense_Mutation	SNP	C	T	T	rs149783473		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108869110	108869110	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149885007	149885007	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40850212	40850212	+	3'UTR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC4	255061	broad.mit.edu	37	17	47921423	47921423	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC4	255061	broad.mit.edu	37	17	47925475	47925475	+	5'Flank	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150464139	150464139	+	Splice_Site	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168266910	168266910	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79283520	79283520	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TC2N	123036	broad.mit.edu	37	14	92249542	92249542	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TC2N	123036	broad.mit.edu	37	14	92249555	92249555	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3C	162699	broad.mit.edu	37	18	44555306	44555306	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114849310	114849310	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTE1	202500	broad.mit.edu	37	6	44253686	44253686	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179631407	179631407	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120996139	120996139	+	Silent	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESK1	7016	broad.mit.edu	37	9	35607349	35607349	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJAP1	93643	broad.mit.edu	37	6	43471447	43471447	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TK2	7084	broad.mit.edu	37	16	66551169	66551169	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82324521	82324521	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82324529	82324529	+	Intron	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114164516	114164516	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20073736	20073736	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM120A	83862	broad.mit.edu	37	7	75621696	75621696	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126138528	126138528	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM190	147744	broad.mit.edu	37	19	55889574	55889574	+	3'UTR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19737487	19737487	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29811576	29811576	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101257341	101257341	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP1	7126	broad.mit.edu	37	17	26668549	26668549	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175063094	175063094	+	Intron	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175325656	175325656	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175360440	175360440	+	Silent	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144345875	144345875	+	Intron	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934006	10934006	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10951323	10951323	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31355390	31355390	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142626486	142626486	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKU	25987	broad.mit.edu	37	11	76507537	76507537	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43411267	43411267	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43411289	43411289	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75036904	75036904	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39C	125488	broad.mit.edu	37	18	21644065	21644065	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89343673	89343673	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179425729	179425729	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132237774	132237774	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3E	112714	broad.mit.edu	37	2	130951907	130951907	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158924616	158924616	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC1	10422	broad.mit.edu	37	9	138836749	138836749	+	Intron	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC1	10422	broad.mit.edu	37	9	138837002	138837002	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234663814	234663814	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70462176	70462176	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35584047	35584047	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654231	210654231	+	Intron	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215848937	215848937	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78194222	78194222	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79491665	79491665	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865517	49865517	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89464595	89464595	+	IGR	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	110073319	110073319	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	27300434	27300434	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8787914	8787914	+	IGR	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59294668	59294668	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96103281	96103281	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20359040	20359040	+	IGR	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20434211	20434211	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20457295	20457295	+	IGR	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32224856	32224856	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32391057	32391057	+	IGR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926999	32926999	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402054	33402054	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499382	22499382	+	IGR	SNP	A	C	C	rs147789322	by1000genomes	TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23185869	23185869	+	IGR	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688195	23688195	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	4621638	4621638	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	205822890	205822890	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30699345	30699345	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6195690	6195690	+	IGR	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10614528	10614528	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110490702	110490702	+	IGR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130988949	130988949	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136956786	136956786	+	IGR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210044240	210044240	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	232450557	232450557	+	IGR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97696269	97696269	+	IGR	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	160415027	160415027	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99944819	99944819	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362963	16362963	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57460780	57460780	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	127121118	127121118	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	138875600	138875601	+	IGR	INS	-	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157414590	157414590	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882503	29882503	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109649074	109649074	+	IGR	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	132522287	132522287	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841361	57841361	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63903279	63903279	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56535090	56535090	+	IGR	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56718350	56718350	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128469	57128470	+	IGR	DNP	CC	AT	AT			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63100039	63100039	+	IGR	SNP	A	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63100041	63100041	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63642652	63642652	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138296075	138296075	+	IGR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109932527	109932527	+	IGR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	131208284	131208285	+	IGR	DEL	AA	-	-	rs143368600		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	136206212	136206212	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30773554	30773554	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800733	30800733	+	IGR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44076548	44076548	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69502112	69502112	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69830344	69830344	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	70711562	70711562	+	IGR	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	74723228	74723228	+	IGR	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114899885	114899885	+	IGR	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134314319	134314319	+	IGR	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179083	26179083	+	IGR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828577	79828577	+	IGR	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77910745	77910745	+	Intron	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VMO1	284013	broad.mit.edu	37	17	4689248	4689248	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62176562	62176562	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184633343	184633343	+	Intron	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124007327	124007327	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAC	51322	broad.mit.edu	37	10	28905133	28905133	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS	7453	broad.mit.edu	37	14	100820874	100820874	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85630298	85630298	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85716110	85716111	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	708613	708613	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC12	128488	broad.mit.edu	37	20	43752329	43752329	+	3'UTR	SNP	G	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1976612	1976612	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30924661	30924661	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78458910	78458910	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY1	7528	broad.mit.edu	37	14	100705788	100705790	+	In_Frame_Del	DEL	CCA	-	-			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB34	403341	broad.mit.edu	37	9	129642401	129642401	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC4	29063	broad.mit.edu	37	4	25370866	25370866	+	3'UTR	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC22	283576	broad.mit.edu	37	14	77599975	77599975	+	3'UTR	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72036255	72036255	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72050808	72050808	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50705467	50705467	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146156370	146156370	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF195	7748	broad.mit.edu	37	11	3381328	3381328	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38108110	38108110	+	Intron	SNP	T	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF324	25799	broad.mit.edu	37	19	58983439	58983439	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188723	57188723	+	Silent	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF514	84874	broad.mit.edu	37	2	95815560	95815560	+	Silent	SNP	G	T	T	rs144989588		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF544	27300	broad.mit.edu	37	19	58773673	58773673	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF559	84527	broad.mit.edu	37	19	9452759	9452759	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9583939	9583939	+	Intron	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF562	54811	broad.mit.edu	37	19	9771350	9771350	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64970196	64970196	+	Intron	SNP	A	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF669	79862	broad.mit.edu	37	1	247265290	247265290	+	Silent	SNP	T	C	C			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF782	158431	broad.mit.edu	37	9	99581987	99581987	+	Silent	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF92	168374	broad.mit.edu	37	7	64852924	64852924	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36840725	36840725	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473002	22473002	+	RNA	SNP	G	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76073178	76073178	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37188577	37188577	+	RNA	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142827206	142827206	+	Intron	SNP	T	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90218680	90218680	+	Intron	SNP	A	G	G			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260312	90260312	+	Intron	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
