Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PINK1	65018	broad.mit.edu	36	1	20848267	20848267	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20848267	20848267	PINK1	1	G	G	A	40
TNN	63923	broad.mit.edu	36	1	173333294	173333294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	173333294	173333294	TNN	1	C	C	T	19
CACNA1C	775	broad.mit.edu	36	12	2492406	2492406	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	2492406	2492406	CACNA1C	12	G	G	A	37
CACNA1C	775	broad.mit.edu	36	12	2644415	2644415	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2644415	2644415	CACNA1C	12	C	C	G	24
FGF23	8074	broad.mit.edu	36	12	4350108	4350108	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	4350108	4350108	FGF23	12	G	G	A	39
AKAP3	10566	broad.mit.edu	36	12	4607565	4607565	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4607565	4607565	AKAP3	12	C	C	A	32
F7	2155	broad.mit.edu	36	13	112821173	112821173	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	112821173	112821173	F7	13	C	C	A	18
TEP1	7011	broad.mit.edu	36	14	19906445	19906445	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	19906445	19906445	TEP1	14	A	A	G	4
ZFYVE26	23503	broad.mit.edu	36	14	67330180	67330180	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	67330180	67330180	ZFYVE26	14	C	C	T	25
ZNF839	55778	broad.mit.edu	36	14	101875210	101875210	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	101875210	101875210	ZNF839	14	G	G	A	45
MAP1A	4130	broad.mit.edu	36	15	41606018	41606018	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	41606018	41606018	MAP1A	15	C	C	A	25
GLDN	342035	broad.mit.edu	36	15	49483974	49483974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49483974	49483974	GLDN	15	G	G	A	40
NARG2	79664	broad.mit.edu	36	15	58521964	58521964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58521964	58521964	NARG2	15	C	C	T	29
SLC12A4	6560	broad.mit.edu	36	16	66553081	66553081	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	66553081	66553081	SLC12A4	16	C	C	T	19
HYDIN	54768	broad.mit.edu	36	16	69535249	69535249	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	69535249	69535249	HYDIN	16	T	T	C	60
TP53	7157	broad.mit.edu	36	17	7519095	7519095	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	7519095	7519095	TP53	17	C	C	A	18
CYP2F1	1572	broad.mit.edu	36	19	46325669	46325669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46325669	46325669	CYP2F1	19	T	T	C	58
DACT3	147906	broad.mit.edu	36	19	51843806	51843806	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	51843806	51843806	DACT3	19	C	C	T	22
KCNF1	3754	broad.mit.edu	36	2	10970756	10970756	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	10970756	10970756	KCNF1	2	G	G	A	38
STAMBP	10617	broad.mit.edu	36	2	73930019	73930019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73930019	73930019	STAMBP	2	G	G	A	38
NEB	4703	broad.mit.edu	36	2	152101951	152101951	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	152101951	152101951	NEB	2	A	A	C	15
ANKRD5	63926	broad.mit.edu	36	20	9978770	9978770	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9978770	9978770	ANKRD5	20	T	T	A	59
DIP2A	23181	broad.mit.edu	36	21	46784257	46784257	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46784257	46784257	DIP2A	21	A	A	G	7
TUBGCP6	85378	broad.mit.edu	36	22	49000210	49000210	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	49000210	49000210	TUBGCP6	22	G	G	A	40
MLH1	4292	broad.mit.edu	36	3	37017540	37017540	+	Nonsense_Mutation	SNP	C	C	T	rs63751221	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	37017540	37017540	MLH1	3	C	C	T	31
CYP8B1	1582	broad.mit.edu	36	3	42892237	42892237	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	42892237	42892237	CYP8B1	3	G	G	A	39
TTC14	151613	broad.mit.edu	36	3	181810643	181810643	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	181810643	181810643	TTC14	3	T	T	C	49
KIT	3815	broad.mit.edu	36	4	55299416	55299416	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	55299416	55299416	KIT	4	G	G	A	39
NUP155	9631	broad.mit.edu	36	5	37353868	37353868	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	37353868	37353868	NUP155	5	C	C	A	30
UBR2	23304	broad.mit.edu	36	6	42731385	42731385	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42731385	42731385	UBR2	6	G	G	C	33
CUL7	9820	broad.mit.edu	36	6	43121332	43121332	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	43121332	43121332	CUL7	6	T	T	C	51
PRSS35	167681	broad.mit.edu	36	6	84290040	84290040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	84290040	84290040	PRSS35	6	C	C	T	28
ABCA13	154664	broad.mit.edu	36	7	48289036	48289036	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	48289036	48289036	ABCA13	7	C	C	T	29
TFR2	7036	broad.mit.edu	36	7	100056646	100056646	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	100056646	100056646	TFR2	7	C	C	T	31
CUX1	1523	broad.mit.edu	36	7	101628828	101628828	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	101628828	101628828	CUX1	7	C	C	G	20
GRM8	2918	broad.mit.edu	36	7	126533856	126533856	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	126533856	126533856	GRM8	7	C	C	T	31
RHOBTB2	23221	broad.mit.edu	36	8	22920742	22920742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22920742	22920742	RHOBTB2	8	G	G	A	40
FAM135B	51059	broad.mit.edu	36	8	139232705	139232705	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	139232705	139232705	FAM135B	8	G	G	A	47
NUP188	23511	broad.mit.edu	36	9	130808641	130808642	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	130808641	130808642	NUP188	9	GG	GG	AA	43
FAM166A	401565	broad.mit.edu	36	9	139258058	139258058	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	139258058	139258058	FAM166A	9	A	A	T	8
PTEN	5728	broad.mit.edu	36	10	89707652	89707652	+	Frame_Shift_Del	DEL	C	-	-	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10			-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	Broad	Frame_Shift_Del	DEL	89707652	89707652	PTEN	10	C	-	-	19
DAD1	1603	broad.mit.edu	36	14	22127883	22127884	+	Frame_Shift_Del	DEL	AG	-	AG	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	22127883	22127884	DAD1	14	AG	-	AG	7
REST	5978	broad.mit.edu	36	4	57472321	57472324	+	Frame_Shift_Del	DEL	ACAT	-	-	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	57472321	57472324	REST	4	ACAT	-	-	6
TNXB	7148	broad.mit.edu	36	6	32137896	32137925	+	Splice_Site_Del	DEL	CCCATCGTCCACTCACCTGTCACCCCGATG	-	CCCATCGTCCACTCACCTGTCACCCCGATG	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	32137896	32137925	TNXB	6	CCCATCGTCCACTCACCTGTCACCCCGATG	-	CCCATCGTCCACTCACCTGTCACCCCGATG	30
SLC37A3	84255	broad.mit.edu	36	7	139694985	139694987	+	In_Frame_Del	DEL	AGA	-	AGA	novel	Unknown	TCGA-13-1492-01	TCGA-13-1492-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	139694985	139694987	SLC37A3	7	AGA	-	AGA	7
