Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52601788	52601788	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6189927	6189927	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6507312	6507312	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7208738	7208738	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7279781	7279781	+	Intron	SNP	A	G	G	rs141771330	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7383005	7383005	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7645464	7645464	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7726693	7726693	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9010579	9010579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9243157	9243157	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADACL3	126767	broad.mit.edu	37	1	12785656	12785656	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44279795	44279795	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57237744	57237744	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67148331	67148331	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48313368	48313368	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94463735	94463735	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66883571	66883571	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87151352	87151352	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87174373	87174373	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87225140	87225140	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87079476	87079476	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48234168	48234168	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48142414	48142414	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48750320	48750320	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17425971	17425971	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17432168	17432168	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22069878	22069878	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119020680	119020680	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD4	63874	broad.mit.edu	37	14	23072500	23072500	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100630515	100630515	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148630009	148630009	+	Splice_Site	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148637877	148637877	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35468402	35468402	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35591928	35591928	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109644722	109644722	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109654629	109654629	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32483252	32483252	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32408696	32408696	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8368601	8368601	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20559629	20559629	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568719	229568719	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74143906	74143906	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236918233	236918233	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66322144	66322144	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158705316	158705316	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42849053	42849053	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM17	6868	broad.mit.edu	37	2	9661433	9661436	+	Frame_Shift_Del	DEL	TGAG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156940497	156940497	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70926066	70926066	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70926203	70926203	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87780627	87780627	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106452740	106452740	+	RNA	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106552120	106552120	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106586325	106586325	+	RNA	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106653400	106653400	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106774149	106774149	+	RNA	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107114175	107114175	+	RNA	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38961283	38961283	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33637777	33637777	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5182436	5182436	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239824	5239824	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100672149	100672149	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73171796	73171796	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28306902	28306902	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64492904	64492904	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64524897	64524897	+	Silent	SNP	G	A	A	rs148016958		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64592818	64592818	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18829643	18829643	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84365064	84365064	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154575013	154575013	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41211163	41211163	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7691158	7691158	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7724674	7724674	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7766939	7766939	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25061436	25061436	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123022044	123022044	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123051504	123051504	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123051537	123051537	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49167445	49167445	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49168255	49168255	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50324570	50324570	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131826567	131826567	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131848488	131848488	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131896913	131896913	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31121485	31121485	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31126081	31126081	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31126629	31126629	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116058988	116058988	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	87968821	87968821	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74354299	74354299	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFP	174	broad.mit.edu	37	4	74315756	74315756	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86823128	86823128	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86898139	86898139	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49023513	49023513	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL5	60509	broad.mit.edu	37	2	27275819	27275819	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG1	3267	broad.mit.edu	37	2	228356188	228356188	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG1	3267	broad.mit.edu	37	2	228384753	228384753	+	Silent	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIG1	51390	broad.mit.edu	37	6	143654710	143654710	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151670260	151670260	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86087238	86087238	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86182602	86182602	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49957746	49957746	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32841195	32841195	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33014719	33014719	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91570285	91570285	+	5'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	244006636	244006636	+	5'Flank	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125831734	125831734	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135239743	135239743	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG5	29880	broad.mit.edu	37	13	37569465	37569465	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29448340	29448340	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73659253	73659253	+	Intron	SNP	G	T	T	rs138395969	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73717355	73717355	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45940953	45940953	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113352085	113352085	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113360962	113360962	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202591928	202591928	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44296906	44296906	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBN	258	broad.mit.edu	37	4	71469745	71469745	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46565612	46565612	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMDHD1	144193	broad.mit.edu	37	12	96350448	96350448	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMELX	265	broad.mit.edu	37	X	11316741	11316742	+	Frame_Shift_Ins	INS	-	C	C	rs2106416	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMELY	266	broad.mit.edu	37	Y	6736466	6736466	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41525700	41525700	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41525861	41525861	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41573371	41573371	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114282105	114282105	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61833745	61833745	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKAR	150709	broad.mit.edu	37	2	190541598	190541598	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54559908	54559908	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4085565	4085565	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139928881	139928881	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKIB1	54467	broad.mit.edu	37	7	92020476	92020476	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241494377	241494377	+	5'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13A	88455	broad.mit.edu	37	12	110450881	110450881	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13A	88455	broad.mit.edu	37	12	110467403	110467403	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73979564	73979564	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27317875	27317875	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37430931	37430931	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37434003	37434003	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37441084	37441084	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD42	338699	broad.mit.edu	37	11	82924432	82924432	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD6	22881	broad.mit.edu	37	6	90327653	90327653	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99145090	99145090	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26663652	26663652	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22249140	22249140	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45664174	45664174	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45741770	45741770	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69409681	69409681	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36671636	36671636	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G2	8906	broad.mit.edu	37	14	24030622	24030622	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M2	10053	broad.mit.edu	37	19	10692321	10692321	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	34044310	34044310	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83360478	83360478	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26802497	26802497	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCDD1	147495	broad.mit.edu	37	18	10471851	10471851	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112164574	112164574	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC1	339	broad.mit.edu	37	12	7805422	7805422	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3D	140564	broad.mit.edu	37	22	39425497	39425497	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21225455	21225455	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232021	21232021	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21232396	21232396	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21237475	21237475	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21255357	21255357	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOH	350	broad.mit.edu	37	17	64216781	64216781	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33385393	33385394	+	Intron	INS	-	C	C	rs149447732	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58476266	58476266	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115350152	115350152	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115351383	115351383	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115361549	115361549	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35192825	35192825	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72406623	72406623	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36152616	36152616	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121303519	121303519	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121303853	121303853	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121305236	121305236	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86893183	86893183	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69040400	69040400	+	Intron	SNP	G	A	A	rs143939326	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69053210	69053210	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142206329	142206337	+	Intron	DEL	GTGCCTATC	-	-	rs113029286		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36272067	36272067	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36278945	36278945	+	Missense_Mutation	SNP	C	T	T	rs140331892	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32563450	32563450	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11242397	11242397	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11315213	11315213	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57872991	57872991	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156938092	156938092	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156943483	156943483	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73022472	73022472	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111896374	111896374	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111896544	111896544	+	Splice_Site	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235383692	235383692	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63852624	63852624	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23326112	23326112	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC4	55130	broad.mit.edu	37	10	28276388	28276388	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX2	9823	broad.mit.edu	37	X	100912657	100912657	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35750658	35750658	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69499972	69499972	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990082	2990082	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART1	417	broad.mit.edu	37	11	3681682	3681682	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131072676	131072676	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131073091	131073091	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131216280	131216281	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131285694	131285694	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94420759	94420759	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB7	140460	broad.mit.edu	37	15	101152681	101152681	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155324277	155324277	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1553973	1553973	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62465608	62465608	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62475442	62475442	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176857156	176857156	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176934242	176934242	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176954135	176954135	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176992827	176992827	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177001570	177001570	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119858368	119858368	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120113323	120113323	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7	11016	broad.mit.edu	37	12	53910986	53910986	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96775859	96775859	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL2	64225	broad.mit.edu	37	2	38542463	38542463	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108159697	108159697	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25925268	25925268	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138828081	138828081	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138857046	138857046	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194181540	194181540	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193036720	193036720	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160104464	160104464	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160104888	160104888	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42492807	42492807	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119513326	119513326	+	Splice_Site	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	89996906	89996906	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B1	490	broad.mit.edu	37	12	90028903	90028903	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130656229	130656229	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84486906	84486906	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5A1	498	broad.mit.edu	37	18	43664208	43664208	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5S	27109	broad.mit.edu	37	14	50789464	50789464	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40666036	40666036	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1C1	528	broad.mit.edu	37	8	104053311	104053311	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77264821	77264821	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42592799	42592799	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55338753	55338753	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154318893	154318893	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50287514	50287514	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPAF2	91647	broad.mit.edu	37	17	17931576	17931576	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76940404	76940404	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28841176	28841176	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28845423	28845423	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7L3	56970	broad.mit.edu	37	17	42274204	42274204	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69952102	69952102	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58201312	58201312	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1A	552	broad.mit.edu	37	12	63543567	63543567	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZIN1	51582	broad.mit.edu	37	8	103851074	103851074	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT2	148789	broad.mit.edu	37	1	235613469	235613469	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT2	124872	broad.mit.edu	37	17	47234049	47234049	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42613778	42613778	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11021629	11021629	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11022802	11022802	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11028375	11028375	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11069457	11069457	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69758008	69758008	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215661848	215661848	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171553404	171553404	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31598920	31598920	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1A	11177	broad.mit.edu	37	14	35262132	35262132	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	57007918	57007918	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160206251	160206251	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160289774	160289774	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58887778	58887778	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAT1	586	broad.mit.edu	37	12	24995313	24995313	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCKDHA	593	broad.mit.edu	37	19	41895497	41895497	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60689368	60689368	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99723739	99723740	+	Intron	DNP	AC	TA	TA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6	604	broad.mit.edu	37	3	187446181	187446181	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129149328	129149328	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129150088	129150088	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB2	624	broad.mit.edu	37	14	96706538	96706538	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133118913	133118913	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60562756	60562756	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32458939	32458939	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32613848	32613848	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32694488	32694488	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11400689	11400689	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMI1	648	broad.mit.edu	37	10	22615539	22615539	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22053594	22053594	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79832345	79832345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83926518	83926518	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112989521	112989521	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31604874	31604874	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41199690	41199690	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF2	55290	broad.mit.edu	37	8	37702165	37702165	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9785913	9785913	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRPF1	7862	broad.mit.edu	37	3	9785987	9785987	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRS3	680	broad.mit.edu	37	X	135574131	135574131	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108051342	108051342	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTF3L4	91408	broad.mit.edu	37	1	52549309	52549309	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG2	7832	broad.mit.edu	37	1	203274720	203274720	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26459904	26459904	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1	699	broad.mit.edu	37	2	111395586	111395586	+	Silent	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98708959	98708959	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127427051	127427051	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21806653	21806653	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105945885	105945885	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105971899	105971899	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf36	283422	broad.mit.edu	37	12	13526177	13526177	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112642244	112642244	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97147597	97147597	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf70	341346	broad.mit.edu	37	12	27623795	27623795	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46946097	46946097	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf23	80209	broad.mit.edu	37	13	39600516	39600516	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99183212	99183212	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf28	122525	broad.mit.edu	37	14	45373679	45373679	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58599924	58599924	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74203714	74203714	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf70	80262	broad.mit.edu	37	16	67178084	67178084	+	Intron	DEL	G	-	-	rs10717954		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8140619	8140619	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf68	80169	broad.mit.edu	37	17	8146359	8146359	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf22	79863	broad.mit.edu	37	18	77798591	77798591	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf46	163183	broad.mit.edu	37	19	36496283	36496283	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44251649	44251649	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF9	338872	broad.mit.edu	37	13	24892875	24892875	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1R	715	broad.mit.edu	37	12	7242749	7242749	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf114	57821	broad.mit.edu	37	1	169390792	169390792	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170964571	170964571	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170965731	170965731	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247726816	247726816	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737459	247737459	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf157	284573	broad.mit.edu	37	1	204006319	204006319	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12819151	12819151	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf213	148898	broad.mit.edu	37	1	23696036	23696036	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf68	100129271	broad.mit.edu	37	1	152690823	152690824	+	5'Flank	DEL	TT	-	-	rs60921240		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172520571	172520571	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9496897	9496897	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf112	140688	broad.mit.edu	37	20	31044011	31044011	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31889241	31889241	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35748039	35748040	+	Intron	INS	-	AAAGA	AAAGA	rs138010782	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf160	140706	broad.mit.edu	37	20	30617580	30617580	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf200	253868	broad.mit.edu	37	20	61143770	61143770	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf200	253868	broad.mit.edu	37	20	61143780	61143780	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf16	84226	broad.mit.edu	37	2	27802077	27802077	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf40	84417	broad.mit.edu	37	2	106690643	106690643	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf43	60526	broad.mit.edu	37	2	20939690	20939690	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf48	348738	broad.mit.edu	37	2	10282292	10282292	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88824993	88824993	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88825151	88825151	+	Splice_Site	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74043093	74043093	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119422091	119422091	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf17	25871	broad.mit.edu	37	3	112727076	112727076	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194947467	194947467	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113506687	113506687	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81844489	81844489	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81849264	81849264	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf26	152816	broad.mit.edu	37	4	76489314	76489314	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf33	132321	broad.mit.edu	37	4	130030648	130030648	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184605449	184605449	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175722177	175722177	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37180167	37180167	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846857	47846857	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf192	116843	broad.mit.edu	37	6	133118163	133118163	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118823181	118823181	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf211	79624	broad.mit.edu	37	6	151779592	151779592	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120918963	120918963	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf37	157657	broad.mit.edu	37	8	96281381	96281381	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27898706	27898706	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116186457	116186457	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90499921	90499922	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135601315	135601315	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86328540	86328540	+	Intron	DEL	A	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86385924	86385924	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24458476	24458476	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24487774	24487774	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121093817	121093817	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP5	56344	broad.mit.edu	37	19	48533815	48533815	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13387897	13387897	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140773555	140773555	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140818801	140818801	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2723011	2723011	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53806857	53806857	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181727929	181727929	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181741408	181741408	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181764222	181764222	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48646276	48646276	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201030974	201030974	+	Intron	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81591751	81591751	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54186083	54186083	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1996143	1996143	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB1	782	broad.mit.edu	37	17	37343840	37343840	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36983619	36983619	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG5	27091	broad.mit.edu	37	17	64881106	64881106	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174973839	174973839	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86010712	86010712	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163362	159163362	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7356309	7356309	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14989437	14989437	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14989457	14989457	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54113731	54113731	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110565064	110565064	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110782432	110782432	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223940694	223940694	+	Intron	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75676059	75676059	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78156489	78156489	+	Silent	SNP	C	T	T	rs148170776		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP14	23581	broad.mit.edu	37	19	15164405	15164405	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP7	840	broad.mit.edu	37	10	115451722	115451722	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8	841	broad.mit.edu	37	2	202149735	202149735	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121994736	121994736	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38849157	38849157	+	Silent	SNP	G	A	A	rs147779129	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57133973	57133973	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219897313	219897313	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57732064	57732064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57752494	57752494	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76916146	76916146	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49918189	49918189	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159846266	159846266	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC38	120935	broad.mit.edu	37	12	96284693	96284693	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC43	124808	broad.mit.edu	37	17	42759545	42759545	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64024523	64024523	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096565	107096565	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC65	85478	broad.mit.edu	37	12	49315155	49315155	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC67	159989	broad.mit.edu	37	11	93118414	93118414	+	Intron	DEL	G	-	-	rs142100846		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC68	80323	broad.mit.edu	37	18	52602106	52602106	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74B	91409	broad.mit.edu	37	2	130898685	130898685	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85568644	85568644	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55527035	55527035	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC89	220388	broad.mit.edu	37	11	85396455	85396455	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28496390	28496390	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC97	90324	broad.mit.edu	37	19	41828558	41828558	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292377	6292377	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNA2	890	broad.mit.edu	37	4	122741833	122741833	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNE2	9134	broad.mit.edu	37	8	95902558	95902558	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNI2	645121	broad.mit.edu	37	5	132084263	132084263	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR6	1235	broad.mit.edu	37	6	167550021	167550021	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62096610	62096610	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17076294	17076294	+	5'Flank	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158225694	158225694	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112666617	112666617	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD274	29126	broad.mit.edu	37	9	5457304	5457304	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51728954	51728954	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157802914	157802914	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD80	941	broad.mit.edu	37	3	119263473	119263473	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8B	926	broad.mit.edu	37	2	87042560	87042560	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111289891	111289891	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC123	8872	broad.mit.edu	37	10	12238445	12238445	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC37	11140	broad.mit.edu	37	19	10502247	10502247	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103450009	103450009	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42SE2	56990	broad.mit.edu	37	5	130695316	130695316	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44360513	44360513	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC5L	988	broad.mit.edu	37	6	44394624	44394624	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA5	113130	broad.mit.edu	37	11	64846930	64846930	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCP1	64866	broad.mit.edu	37	3	45153867	45153867	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981336	64981336	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981776	64981776	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65023551	65023551	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21752318	21752318	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883394	21883394	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31305638	31305638	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323244	31323244	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61687880	61687880	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61689354	61689354	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61760857	61760857	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26906096	26906096	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK19	23097	broad.mit.edu	37	6	110988772	110988772	+	Silent	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK4	1019	broad.mit.edu	37	12	58145206	58145206	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20781382	20781382	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50802720	50802720	+	Silent	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971047	21971047	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDNF	441549	broad.mit.edu	37	10	14861885	14861885	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139866323	139866323	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM6	4680	broad.mit.edu	37	19	42260362	42260381	+	Intron	DEL	ACACACACACACACACACAC	-	-	rs148766923		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA1	1990	broad.mit.edu	37	12	51723690	51723690	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF1	10658	broad.mit.edu	37	11	47508641	47508641	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123907450	123907450	+	Intron	SNP	G	C	C	rs34615236		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49090224	49090224	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170L	645455	broad.mit.edu	37	4	119458985	119458985	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134281647	134281647	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	66995153	66995153	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55883831	55883831	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR1	3078	broad.mit.edu	37	1	196794678	196794678	+	Missense_Mutation	SNP	C	A	A	rs146147352		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151499485	151499485	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50863415	50863415	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1	1105	broad.mit.edu	37	5	98234347	98234347	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53289614	53289614	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203151968	203151968	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29535656	29535656	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHORDC1	26973	broad.mit.edu	37	11	89936453	89936454	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM3	1131	broad.mit.edu	37	1	240071237	240071237	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB1	1140	broad.mit.edu	37	17	7349314	7349314	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY1	22856	broad.mit.edu	37	15	101717888	101717888	+	Missense_Mutation	SNP	C	G	G	rs62621399	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHSY3	337876	broad.mit.edu	37	5	129521162	129521162	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	10995697	10995697	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33648210	33648210	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143018849	143018849	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1510495	1510495	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538603	31538603	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN7	1366	broad.mit.edu	37	17	7163586	7163586	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4E	26253	broad.mit.edu	37	12	8687185	8687185	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLINT1	9685	broad.mit.edu	37	5	157241262	157241262	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65447416	65447416	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122473	140122473	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140265300	140265300	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140283002	140283002	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57728457	57728457	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57737831	57737831	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123375001	123375001	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100543592	100543592	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAH	8418	broad.mit.edu	37	6	25108846	25108846	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBP	7555	broad.mit.edu	37	3	128889865	128889865	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP2	55748	broad.mit.edu	37	18	72180810	72180810	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150911689	150911689	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99013258	99013258	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57949204	57949204	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57950086	57950086	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996431	57996431	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87644958	87644958	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM3	26505	broad.mit.edu	37	2	97492447	97492447	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58592370	58592370	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58608603	58608603	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70732714	70732714	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT3	4849	broad.mit.edu	37	19	54647370	54647370	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTD1	124817	broad.mit.edu	37	17	40963010	40963010	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100012001	100012001	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146471274	146471274	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147600733	147600733	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125261826	125261826	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521317	125521317	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COASY	80347	broad.mit.edu	37	17	40716076	40716076	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165584537	165584537	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46083856	46083856	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23430062	23430062	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103386018	103386018	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103462502	103462502	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103471865	103471865	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33153523	33153523	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75855730	75855730	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75860867	75860867	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105819326	105819326	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105835931	105835931	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70745820	70745820	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70866084	70866084	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94041433	94041433	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56141285	56141285	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139815192	139815192	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139887474	139887475	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48370606	48370606	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110828656	110828656	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111099270	111099270	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10099811	10099811	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10103535	10103535	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130346069	130346069	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD1	150684	broad.mit.edu	37	2	62362895	62362895	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ10A	93058	broad.mit.edu	37	12	56661650	56661650	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	129986529	129986529	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175303167	175303167	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131287511	131287513	+	Intron	DEL	AAG	-	-	rs10611460		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131415477	131415477	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131434755	131434755	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131442188	131442188	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPOX	1371	broad.mit.edu	37	3	98310068	98310068	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8609199	8609199	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207851643	207851643	+	Splice_Site	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207851647	207851647	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207785242	207785242	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207791567	207791567	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28849029	28849029	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84888144	84888144	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84902407	84902407	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD2	83716	broad.mit.edu	37	16	84923004	84923004	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5875061	5875061	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16950117	16950118	+	Intron	DNP	TG	CA	CA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCCL1	84809	broad.mit.edu	37	1	16950793	16950793	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRX	1406	broad.mit.edu	37	19	48343346	48343346	+	3'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB2	1415	broad.mit.edu	37	22	25620801	25620801	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGD	1421	broad.mit.edu	37	2	208986484	208986484	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149433716	149433716	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1424460	1424460	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19315277	19315277	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4646080	4646080	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113529283	113529283	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114137842	114137842	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A2	1459	broad.mit.edu	37	16	58208454	58208454	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23473696	23473696	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19996719	19996719	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTGF	1490	broad.mit.edu	37	6	132271100	132271100	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTGF	1490	broad.mit.edu	37	6	132271222	132271222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085181	80085181	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67679958	67679959	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68013471	68013471	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535301	68535301	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNAL1	8727	broad.mit.edu	37	9	111706259	111706259	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNBL1	56259	broad.mit.edu	37	20	36407683	36407683	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11082866	11082866	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11346432	11346432	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSA	5476	broad.mit.edu	37	20	44520906	44520906	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSF	8722	broad.mit.edu	37	11	66332491	66332491	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432049	117432049	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16995970	16995970	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17082985	17082985	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL5	8065	broad.mit.edu	37	11	107917073	107917073	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43017638	43017638	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43019092	43019092	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43190077	43190077	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUZD1	50624	broad.mit.edu	37	10	124596455	124596455	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48994052	48994052	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50787291	50787291	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50810274	50810274	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996348	143996348	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP20A1	57404	broad.mit.edu	37	2	204157021	204157021	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A6	1548	broad.mit.edu	37	19	41355621	41355621	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42012140	42012140	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99311122	99311122	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025122	16025122	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16034628	16034628	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187118621	187118621	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYR61	3491	broad.mit.edu	37	1	86048044	86048044	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR2	57105	broad.mit.edu	37	13	49281763	49281763	+	Missense_Mutation	SNP	C	A	A	rs150160388	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20016141	20016141	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAXX	1616	broad.mit.edu	37	6	33289173	33289173	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69551229	69551229	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69551564	69551564	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766455	27766455	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD2	131566	broad.mit.edu	37	3	98519390	98519390	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50683754	50683755	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51013320	51013320	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155250833	155250833	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK2	166614	broad.mit.edu	37	4	151153391	151153391	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74592873	74592873	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31231557	31231557	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX17	10521	broad.mit.edu	37	22	38888173	38888173	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169294701	169294701	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169343132	169343132	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169158901	169158901	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6794277	6794277	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29965004	29965004	+	3'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29965936	29965936	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB121	245934	broad.mit.edu	37	20	29992975	29992975	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126531883	126531883	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19326161	19326161	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32213406	32213406	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGAT1	8694	broad.mit.edu	37	8	145541079	145541079	+	Silent	SNP	G	A	A	rs149384210		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56345838	56345838	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14613813	14613813	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14614255	14614255	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42784760	42784760	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169951987	169951987	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54572151	54572151	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX30	22907	broad.mit.edu	37	3	47883200	47883200	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127540983	127540983	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX32	55760	broad.mit.edu	37	10	127579632	127579632	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47882911	47882911	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37634778	37634778	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96213115	96213115	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218244127	218244127	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	232952411	232952411	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233001238	233001238	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIXDC1	85458	broad.mit.edu	37	11	111853272	111853272	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZP434L187	26082	broad.mit.edu	37	15	30515790	30515790	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19644145	19644145	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107542685	107542685	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38136297	38136297	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69669172	69669172	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1485954	1485955	+	Intron	DNP	CA	AG	AG			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124345567	124345567	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124350112	124350112	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124389723	124389723	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124395546	124395546	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32715994	32715994	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118454691	118454691	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124288395	124288395	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7720704	7720704	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21014609	21014609	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21042461	21042461	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21063028	21063028	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21093085	21093085	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13692089	13692089	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13864751	13864751	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38746218	38746218	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38906524	38906524	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11573178	11573178	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	66992529	66992529	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65867630	65867630	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	172348136	172348136	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101715478	101715478	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101715910	101715910	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25457219	25457219	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25470507	25470507	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169147345	169147345	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169508806	169508806	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	312100	312100	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	320268	320268	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	320272	320272	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37541464	37541464	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37649349	37649349	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68009885	68009885	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH2	1802	broad.mit.edu	37	1	44436151	44436151	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116600097	116600097	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154519683	154519683	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64038286	64038286	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64057426	64057426	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74752171	74752171	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113847806	113847806	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113878555	113878555	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42064613	42064613	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7586071	7586071	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56473023	56473023	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTWD2	285605	broad.mit.edu	37	5	118176764	118176764	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP13	51207	broad.mit.edu	37	10	76868738	76868738	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30439421	30439421	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57669619	57669619	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102498629	102498629	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95616613	95616613	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71791294	71791294	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71887922	71887922	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96270221	96270221	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158338041	158338041	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184002808	184002808	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC1	55862	broad.mit.edu	37	6	127636043	127636043	+	Splice_Site	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139165414	139165414	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172533425	172533425	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406507	106406507	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1B2	1933	broad.mit.edu	37	2	207026894	207026894	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1D	1936	broad.mit.edu	37	8	144668878	144668878	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3763384	3763384	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	133023168	133023168	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38338834	38338834	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38464007	38464007	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55241714	55241714	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110920853	110920853	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110920855	110920855	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT1	79813	broad.mit.edu	37	9	140652427	140652427	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37366778	37366778	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141549447	141549447	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A2	1974	broad.mit.edu	37	3	186505046	186505046	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4B	1975	broad.mit.edu	37	12	53413716	53413716	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184043773	184043773	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21183933	21183933	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF6	3692	broad.mit.edu	37	20	33866920	33866920	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23754651	23754651	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL3	1995	broad.mit.edu	37	19	11576947	11576947	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL2	22936	broad.mit.edu	37	5	95234077	95234077	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL2	22936	broad.mit.edu	37	5	95242433	95242433	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL5	60481	broad.mit.edu	37	6	53191751	53191752	+	Intron	DEL	TG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43839687	43839687	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43930117	43930117	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43968754	43968754	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41545679	41545679	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41573857	41573857	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34807691	34807691	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89480446	89480446	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97015540	97015540	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97200310	97200310	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134851763	134851763	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134911334	134911334	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920107	134920107	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184295457	184295457	+	Silent	SNP	C	T	T	rs56102565	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220152160	220152160	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI2	112479	broad.mit.edu	37	16	20811535	20811535	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103499261	103499261	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3	2117	broad.mit.edu	37	1	157098234	157098234	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV4	2118	broad.mit.edu	37	17	41613836	41613836	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVPL	2125	broad.mit.edu	37	17	74005847	74005847	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242045269	242045269	+	Missense_Mutation	SNP	A	C	C	rs111708150		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC5	10640	broad.mit.edu	37	14	57675355	57675355	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	72968242	72968242	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC3	51010	broad.mit.edu	37	9	37780858	37780858	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108380971	108380971	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL1	2134	broad.mit.edu	37	1	26360187	26360188	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45702929	45702929	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45797732	45797732	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133804194	133804194	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187197021	187197021	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187201547	187201547	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57515144	57515144	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14816143	14816143	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113B	91523	broad.mit.edu	37	12	47629097	47629097	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM118B	79607	broad.mit.edu	37	11	126111011	126111011	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM128A	653784	broad.mit.edu	37	2	132241788	132241788	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17654261	17654261	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16478933	16478933	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139165073	139165073	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139185183	139185183	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89658589	89658589	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169B	283777	broad.mit.edu	37	15	98984376	98984376	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30915196	30915196	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30931399	30931399	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150387366	150387366	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150399978	150399978	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51877907	51877907	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129096471	129096471	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46A	55603	broad.mit.edu	37	6	82459798	82459798	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B1	100130302	broad.mit.edu	37	X	24382733	24382733	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16787662	16787662	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78326964	78326964	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40702671	40702671	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626913	43626913	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82A1	151393	broad.mit.edu	37	2	38179277	38179277	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83F	113828	broad.mit.edu	37	22	40415202	40415202	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83G	644815	broad.mit.edu	37	17	18881221	18881221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89877051	89877051	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89824528	89824528	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45628325	45628325	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSA	2193	broad.mit.edu	37	19	13035802	13035802	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150948363	150948363	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92085740	92085740	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLIM1	54751	broad.mit.edu	37	1	16093972	16093972	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112942902	112942902	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48905343	48905343	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127595039	127595039	+	3'UTR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127609548	127609548	+	Silent	SNP	G	T	T	rs28763922	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127614423	127614423	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127647203	127647203	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127648641	127648641	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL12	54850	broad.mit.edu	37	19	9922150	9922150	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15517929	15517929	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937335	15937335	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161475672	161475672	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGRT	2217	broad.mit.edu	37	19	50027726	50027726	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157509113	157509113	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159778348	159778348	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1C	56929	broad.mit.edu	37	5	114860290	114860290	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125094490	125094490	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125107433	125107433	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT3	83706	broad.mit.edu	37	11	63987608	63987608	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108285565	108285565	+	Intron	DEL	A	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108521894	108521894	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14862090	14862090	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102378930	102378930	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1OP	11116	broad.mit.edu	37	6	167446089	167446089	+	Splice_Site	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123324982	123324982	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67272057	67272057	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGF	2277	broad.mit.edu	37	X	15365210	15365210	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP7	51661	broad.mit.edu	37	2	179334275	179334275	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55750495	55750495	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ22536	401237	broad.mit.edu	37	6	21980813	21980813	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142477708	142477708	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128490893	128490893	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128490895	128490895	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180038434	180038434	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33261734	33261734	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308029	240308029	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153471417	153471417	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147030164	147030164	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN3KRP	79672	broad.mit.edu	37	17	80680682	80680682	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3A	22862	broad.mit.edu	37	13	49771828	49771828	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXO3	2309	broad.mit.edu	37	6	108882901	108882901	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP1	27086	broad.mit.edu	37	3	71037287	71037287	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79102798	79102798	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79238462	79238462	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG2B	441581	broad.mit.edu	37	10	135438867	135438867	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRK	2444	broad.mit.edu	37	6	116366242	116366242	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69242992	69242992	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69351425	69351425	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49210406	49210406	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49217725	49217725	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49295688	49295688	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ1	24140	broad.mit.edu	37	X	48340055	48340055	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37430911	37430911	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39261720	39261720	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101377760	101377760	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161292628	161292629	+	Intron	DNP	AA	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151376548	151376548	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151393194	151393194	+	Intron	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47405466	47405466	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47408703	47408703	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151123873	151123873	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46099428	46099428	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161520822	161520822	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161569021	161569021	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27636063	27636063	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27722737	27722737	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88450887	88450887	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31215630	31215630	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230391037	230391037	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT5	11227	broad.mit.edu	37	2	158156186	158156186	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69798015	69798015	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69798085	69798085	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16264096	16264096	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPDHS	26330	broad.mit.edu	37	19	36027890	36027890	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAPVD1	26130	broad.mit.edu	37	9	128067316	128067316	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34900352	34900352	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9830037	9830037	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCDH	2639	broad.mit.edu	37	19	13002761	13002761	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCLC	2729	broad.mit.edu	37	6	53370698	53370698	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52993488	52993488	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT2	2651	broad.mit.edu	37	6	10556885	10556885	+	Intron	SNP	A	T	T	rs56034304		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT4	51301	broad.mit.edu	37	5	74325615	74325615	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP2	54834	broad.mit.edu	37	1	118413399	118413399	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN7	79760	broad.mit.edu	37	19	45593435	45593435	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158366821	158366821	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFOD1	54438	broad.mit.edu	37	6	13420075	13420075	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216120	55216120	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958354	61958354	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958482	61958482	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233671147	233671147	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78511976	78511976	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA4	2701	broad.mit.edu	37	1	35260489	35260489	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJC1	10052	broad.mit.edu	37	17	42882276	42882276	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141901976	141901976	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74537461	74537461	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9765240	9765240	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151274838	151274838	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS	2744	broad.mit.edu	37	2	191827653	191827653	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTSCR2	29997	broad.mit.edu	37	19	48260032	48260032	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605706	58605706	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605717	58605717	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62223858	62223858	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA11	2767	broad.mit.edu	37	19	3119001	3119001	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA12	2768	broad.mit.edu	37	7	2802292	2802292	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA13	10672	broad.mit.edu	37	17	63014378	63014378	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNE	10020	broad.mit.edu	37	9	36227406	36227406	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNE	10020	broad.mit.edu	37	9	36246001	36246001	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG11	2791	broad.mit.edu	37	7	93555431	93555431	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT2	2793	broad.mit.edu	37	17	47284225	47284225	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133357422	133357422	+	Missense_Mutation	SNP	C	G	G	rs138371674	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155721781	155721781	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155722997	155722997	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794809	37794809	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167026683	167026683	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167054397	167054397	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAM	57678	broad.mit.edu	37	10	113919791	113919791	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96690296	96690296	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132445407	132445407	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94086340	94086340	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157367604	157367604	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176561960	176561960	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR109A	338442	broad.mit.edu	37	12	123186985	123186985	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46988587	46988587	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431050	135431050	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431650	135431650	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100362407	100362407	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131514479	131514479	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25464427	25464427	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167570897	167570897	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR6	2830	broad.mit.edu	37	6	110301280	110301280	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR77	27202	broad.mit.edu	37	19	47843941	47843941	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28474483	28474484	+	Intron	INS	-	AC	AC	rs56155284		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11716528	11716528	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11774236	11774236	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL2	79977	broad.mit.edu	37	8	102570809	102570809	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158257004	158257004	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158284002	158284002	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87676135	87676135	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94516393	94516393	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30961209	30961209	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	101878726	101878726	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42526491	42526491	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48925174	48925174	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	3011339	3011339	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47422325	47422325	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146719982	146719982	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88330367	88330367	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88582864	88582864	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126086315	126086315	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	42895126	42895126	+	5'Flank	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119595286	119595286	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTO2	119391	broad.mit.edu	37	10	106039063	106039063	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2E1	2960	broad.mit.edu	37	3	120469615	120469615	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89984312	89984312	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108635132	108635132	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSB	2990	broad.mit.edu	37	7	65425966	65425966	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GVIN1	387751	broad.mit.edu	37	11	6738748	6738748	+	Missense_Mutation	SNP	C	A	A	rs147158743	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127447840	127447840	+	Missense_Mutation	SNP	C	A	A	rs143216051	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21733137	21733137	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54403866	54403866	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC11	79885	broad.mit.edu	37	3	13543374	13543374	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18675917	18675917	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18816423	18816423	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50540394	50540394	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDHD3	81932	broad.mit.edu	37	9	116136292	116136292	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73945483	73945483	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58134512	58134512	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58144882	58144882	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41004477	41004477	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31613464	31613464	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45472822	45472822	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124731846	124731846	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66698701	66698701	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124805828	124805828	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28361810	28361810	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69785392	69785392	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXIM1	10614	broad.mit.edu	37	17	43227077	43227077	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81355253	81355253	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHATL	57467	broad.mit.edu	37	3	42734465	42734465	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1E	3008	broad.mit.edu	37	6	26157188	26157188	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BG	8339	broad.mit.edu	37	6	26216650	26216650	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3B	8358	broad.mit.edu	37	6	26031919	26031919	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71010295	71010295	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-A	3105	broad.mit.edu	37	6	29910337	29910337	+	Missense_Mutation	SNP	G	A	A	rs41541013		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRA	3122	broad.mit.edu	37	6	32410341	32410341	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-E	3133	broad.mit.edu	37	6	30460194	30460194	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30135772	30135772	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30142619	30142619	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55364115	55364115	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCR	3156	broad.mit.edu	37	5	74646043	74646043	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCR	3156	broad.mit.edu	37	5	74647475	74647475	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43292476	43292476	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH1	3187	broad.mit.edu	37	5	179044502	179044502	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH1	3187	broad.mit.edu	37	5	179048375	179048375	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628303	46628303	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC13	3229	broad.mit.edu	37	12	54338903	54338903	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC9	3225	broad.mit.edu	37	12	54396303	54396303	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD3	3232	broad.mit.edu	37	2	177036402	177036402	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6461729	6461729	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152193383	152193383	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21977862	21977862	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B2	3291	broad.mit.edu	37	16	67469789	67469789	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B2	3294	broad.mit.edu	37	16	82131727	82131727	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B1	3283	broad.mit.edu	37	1	120050339	120050339	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL2	84263	broad.mit.edu	37	9	115216390	115216390	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF1	3297	broad.mit.edu	37	8	145532727	145532727	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF5	124535	broad.mit.edu	37	17	56553574	56553574	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AA1	3320	broad.mit.edu	37	14	102550063	102550063	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB4P	664618	broad.mit.edu	37	15	58983653	58983653	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122931384	122931384	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPC159	29094	broad.mit.edu	37	2	64682618	64682618	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATIP2	10553	broad.mit.edu	37	11	20385630	20385630	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87725673	87725673	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113779910	113779910	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147929617	147929617	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92508816	92508816	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIT5	24138	broad.mit.edu	37	10	91177635	91177635	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA1	3439	broad.mit.edu	37	9	21441092	21441092	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNAR2	3455	broad.mit.edu	37	21	34632984	34632984	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99465260	99465260	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47076515	47076515	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47120761	47120761	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151171376	151171376	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130410793	130410793	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18704875	18704875	+	3'UTR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37985579	37985579	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37991415	37991415	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA1	3597	broad.mit.edu	37	X	117875168	117875168	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52109151	52109151	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103040548	103040548	+	Silent	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102642745	102642745	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RB	53833	broad.mit.edu	37	3	136674589	136674589	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27460064	27460064	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL26	55801	broad.mit.edu	37	12	68619522	68619522	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28513453	28513453	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37529574	37529574	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2	3558	broad.mit.edu	37	4	123374908	123374908	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4I1	259307	broad.mit.edu	37	19	50399290	50399290	+	Missense_Mutation	SNP	C	T	T	rs138247129		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35874437	35874437	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166904754	166904754	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76715146	76715146	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76731841	76731841	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949985	100949985	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCA1	388324	broad.mit.edu	37	17	4892928	4892928	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INMT	11185	broad.mit.edu	37	7	30791745	30791745	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121550902	121550902	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156813305	156813305	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7174523	7174523	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS10	55174	broad.mit.edu	37	8	19701531	19701531	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77635798	77635798	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INVS	27130	broad.mit.edu	37	9	103035340	103035340	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154568616	154568616	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30787166	30787166	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25415954	25415954	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32673606	32673606	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF9	10379	broad.mit.edu	37	14	24631142	24631147	+	Intron	DEL	TTGTTG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107977986	107977986	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISCA1P1	389293	broad.mit.edu	37	5	62072491	62072491	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	32981421	32981421	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33033185	33033185	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52240774	52240774	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42451938	42451938	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48148264	48148264	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48151853	48151853	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182335412	182335414	+	Intron	DEL	CTT	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182360068	182360068	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31424105	31424105	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31336130	31336130	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45384961	45384961	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7773947	7773947	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35147373	35147373	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVNS1ABP	10625	broad.mit.edu	37	1	185270164	185270164	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27071166	27071166	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78610650	78610650	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75227268	75227268	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39681421	39681421	+	Intron	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123857393	123857393	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124160708	124160708	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40271501	40271501	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT5	10524	broad.mit.edu	37	11	65486700	65486700	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA3	3738	broad.mit.edu	37	1	111215974	111215974	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033300	30033300	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB3	9196	broad.mit.edu	37	17	7830955	7830955	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73819640	73819640	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73848655	73848655	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327635	40327635	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63447716	63447716	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163241425	163241425	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163256901	163256901	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19190145	19190145	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21485228	21485228	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171565	68171565	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88658510	88658510	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215345456	215345456	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178546229	178546229	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178560424	178560424	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178978295	178978295	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154728252	154728253	+	Intron	DEL	GA	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62046308	62046308	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62046310	62046310	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNS3	3790	broad.mit.edu	37	2	18112229	18112229	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328199	67328199	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD4	386618	broad.mit.edu	37	13	45768721	45768721	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137750928	137750928	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137756415	137756415	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7098900	7098901	+	Intron	INS	-	A	A	rs144381910	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	406210	406210	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53222385	53222385	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53240091	53240091	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610221	10610221	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62604682	62604682	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0040	9674	broad.mit.edu	37	1	175130803	175130803	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126085336	126085336	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36631042	36631042	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27789114	27789114	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55356073	55356073	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55357556	55357556	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0892	23383	broad.mit.edu	37	19	19446587	19446587	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1009	22832	broad.mit.edu	37	6	84865201	84865201	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79749185	79749185	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1024	23251	broad.mit.edu	37	15	79749266	79749266	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123192444	123192444	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57139534	57139534	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24762154	24762154	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1279	26128	broad.mit.edu	37	10	70776073	70776073	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1370	56204	broad.mit.edu	37	15	52901619	52901619	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94087358	94087358	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088193	94088193	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94101080	94101080	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120142	94120142	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94158368	94158368	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94158370	94158370	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100071866	100071866	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138522652	138522652	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1897883	1897883	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111585261	111585261	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5922047	5922047	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241689976	241689976	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901222	51901222	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901871	51901871	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394300	154394300	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39581216	39581216	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170004721	170004721	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC1	3833	broad.mit.edu	37	6	33372891	33372891	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55264078	55264078	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272229	55272229	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55330261	55330261	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55351292	55351292	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55377285	55377285	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55053694	55053694	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126319106	126319106	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126587279	126587279	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC2	23588	broad.mit.edu	37	14	50246943	50246943	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC3	116138	broad.mit.edu	37	6	42986735	42986735	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87782151	87782151	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137045486	137045486	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51329195	51329195	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51325039	51325039	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK4	9622	broad.mit.edu	37	19	51411879	51411879	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK9	284366	broad.mit.edu	37	19	51506941	51506941	+	Intron	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK9	284366	broad.mit.edu	37	19	51512620	51512620	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134981821	134981821	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA2	3838	broad.mit.edu	37	17	66033133	66033133	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32628050	32628050	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA6	23633	broad.mit.edu	37	1	32631613	32631613	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNB1	3837	broad.mit.edu	37	17	45741488	45741488	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733201	152733201	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT13	3860	broad.mit.edu	37	17	39661806	39661806	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT25	147183	broad.mit.edu	37	17	38907272	38907272	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521737	39521737	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT40	125115	broad.mit.edu	37	17	39138624	39138624	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52708822	52708822	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-4	386672	broad.mit.edu	37	21	45994356	45994356	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-2	337959	broad.mit.edu	37	21	31744596	31744596	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31798064	31798064	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31798155	31798155	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP22-1	337979	broad.mit.edu	37	21	31973527	31973527	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP27-1	643812	broad.mit.edu	37	21	31709560	31709560	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-2	83899	broad.mit.edu	37	17	39382869	39382869	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56138593	56138593	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143643024	143643024	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130373906	130373906	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130413887	130413887	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LALBA	3906	broad.mit.edu	37	12	48962426	48962426	+	Intron	SNP	G	A	A	rs4439559		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129571161	129571161	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49159114	49159114	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209800173	209800173	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692490	107692491	+	Intron	DNP	GG	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34046314	34046314	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASP1	3927	broad.mit.edu	37	17	37074947	37074947	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36995371	36995371	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46718607	46718607	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169689934	169689934	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169694092	169694093	+	Intron	DNP	CC	AG	AG			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136575241	136575241	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB1	8861	broad.mit.edu	37	10	103870535	103870535	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88441072	88441072	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156710979	156710979	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LELP1	149018	broad.mit.edu	37	1	153176983	153176983	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD3	23592	broad.mit.edu	37	12	65634920	65634920	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG1	79165	broad.mit.edu	37	19	54660561	54660561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54966210	54966210	+	Missense_Mutation	SNP	G	C	C	rs139748316		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54969198	54969198	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189682018	189682018	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189687173	189687173	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66031414	66031414	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40195186	40195186	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40200007	40200007	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71974202	71974202	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71974360	71974360	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977971	71977971	+	Silent	SNP	C	T	T	rs149642519		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHPP	64077	broad.mit.edu	37	10	126185591	126185591	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX4	89884	broad.mit.edu	37	1	180241234	180241234	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48638992	48638992	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48668715	48668715	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106098	55106098	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54799936	54799936	+	3'UTR	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54783587	54783587	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55177262	55177262	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50586217	50586217	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO1	84894	broad.mit.edu	37	15	77907523	77907523	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO4	339398	broad.mit.edu	37	1	151774293	151774293	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPC	3990	broad.mit.edu	37	15	58834726	58834726	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNA	4000	broad.mit.edu	37	1	156100242	156100242	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165173117	165173117	+	Nonstop_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100272228	100272228	broad.mit.edu	37	X	149284137	149284137	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100288778	100288778	broad.mit.edu	37	12	84952	84952	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106794405	106794405	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150786	150786	broad.mit.edu	37	2	132124473	132124473	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148004980	148004980	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19432987	19432987	+	RNA	SNP	G	A	A	rs35421699		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284661	284661	broad.mit.edu	37	1	4469225	4469225	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285768	285768	broad.mit.edu	37	6	1048139	1048139	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78212057	78212057	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78214002	78214002	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813713	75813713	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75814287	75814287	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36915225	36915225	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91818383	91818383	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22297886	22297886	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728723	728723	broad.mit.edu	37	5	76442491	76442491	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22775149	22775149	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR5	57121	broad.mit.edu	37	12	6730295	6730295	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160969738	160969739	+	Intron	DEL	CA	-	-	rs10755578	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161011992	161011992	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62722054	62722054	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62758162	62758162	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151412264	151412264	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151729384	151729384	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151829938	151829938	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40359729	40359729	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400140	40400140	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141079682	141079682	+	Intron	DEL	A	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283911	141283911	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459407	141459407	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141460100	141460101	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170097603	170097603	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25495466	25495466	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99828101	99828101	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC2	79442	broad.mit.edu	37	3	46586801	46586801	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70502326	70502326	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70542017	70542017	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ4	344657	broad.mit.edu	37	3	169551049	169551049	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN1	57633	broad.mit.edu	37	3	3887010	3887010	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRSAM1	90678	broad.mit.edu	37	9	130221256	130221256	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM1	57408	broad.mit.edu	37	3	54952844	54952844	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115775892	115775892	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116163701	116163701	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSS	4047	broad.mit.edu	37	21	47647500	47647500	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21207494	21207494	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	255975	255975	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23418753	23418753	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114541031	114541031	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYG1	129530	broad.mit.edu	37	2	99907838	99907838	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235950676	235950676	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39913054	39913054	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148797986	148797987	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA8	4107	broad.mit.edu	37	X	149013508	149013508	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254097	30254097	+	Missense_Mutation	SNP	G	T	T	rs150405296		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993803	140993803	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A1	4121	broad.mit.edu	37	6	119509842	119509842	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAOB	4129	broad.mit.edu	37	X	43628482	43628482	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43819801	43819801	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172928628	172928628	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67532304	67532304	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K12	7786	broad.mit.edu	37	12	53876154	53876154	+	Splice_Site	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61769310	61769310	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137112905	137112905	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39106964	39106964	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47950523	47950523	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE2	10982	broad.mit.edu	37	18	32706835	32706835	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164854128	164854128	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220800172	220800172	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS2	92935	broad.mit.edu	37	2	198571382	198571382	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57881806	57881806	+	5'Flank	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66460254	66460254	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN3	4148	broad.mit.edu	37	2	20205840	20205840	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138655116	138655116	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20126579	20126579	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824869	54824869	+	Nonstop_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112437459	112437459	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395739	100395739	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47660846	47660846	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94259620	94259620	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	95019879	95019882	+	Intron	DEL	AGAC	-	-	rs28760289	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30673605	30673605	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90398396	90398396	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED17	9440	broad.mit.edu	37	11	93528077	93528077	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED26	9441	broad.mit.edu	37	19	16689250	16689250	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED30	90390	broad.mit.edu	37	8	118533130	118533130	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED7	9443	broad.mit.edu	37	5	156565908	156565908	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126783303	126783303	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIG1	644890	broad.mit.edu	37	10	15014503	15014503	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37187052	37187052	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1B	4225	broad.mit.edu	37	18	29772463	29772463	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2A	339175	broad.mit.edu	37	17	60512535	60512535	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFF	56947	broad.mit.edu	37	2	228197153	228197153	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC27382	149047	broad.mit.edu	37	1	78722961	78722961	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43280109	43280109	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97528286	97528286	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12261023	12261023	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18389201	18389201	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519A2	574500	broad.mit.edu	37	19	54265661	54265661	+	RNA	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520H	574493	broad.mit.edu	37	19	54244716	54244716	+	5'Flank	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR623	693208	broad.mit.edu	37	13	100008451	100008451	+	RNA	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIRLET7E	406887	broad.mit.edu	37	19	52196047	52196047	+	RNA	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIPL	51085	broad.mit.edu	37	7	73010570	73010570	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89129075	89129075	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89180027	89180027	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89180029	89180029	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158813749	158813749	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNS1	55329	broad.mit.edu	37	15	56756253	56756253	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL1A	92597	broad.mit.edu	37	4	71785928	71785928	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108836923	108836923	+	5'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37710287	37710287	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71360143	71360143	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94204877	94204877	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL10	124995	broad.mit.edu	37	17	45904481	45904481	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL11	65003	broad.mit.edu	37	11	66206352	66206352	+	5'Flank	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL45	84311	broad.mit.edu	37	17	36476730	36476730	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL47	57129	broad.mit.edu	37	3	179306652	179306652	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL9	65005	broad.mit.edu	37	1	151733198	151733198	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL9	65005	broad.mit.edu	37	1	151733227	151733227	+	Intron	DEL	A	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL9	65005	broad.mit.edu	37	1	151733896	151733896	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS9	64965	broad.mit.edu	37	2	105710042	105710042	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRRF	92399	broad.mit.edu	37	9	125042901	125042901	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47690168	47690168	+	Splice_Site	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48027172	48027172	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB2	22921	broad.mit.edu	37	10	23409755	23409755	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17087562	17087562	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSTO2P	100129405	broad.mit.edu	37	1	155717972	155717972	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1B	4490	broad.mit.edu	37	16	56686794	56686794	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121463434	121463434	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD3	80298	broad.mit.edu	37	12	107371701	107371701	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD3	80298	broad.mit.edu	37	12	107372117	107372117	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD2	10797	broad.mit.edu	37	2	74435017	74435017	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32230288	32230288	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31234283	31234283	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR3	8897	broad.mit.edu	37	22	30416572	30416572	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56572638	56572638	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63444361	63444361	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63488886	63488886	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11167224	11167224	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7889566	7889566	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237016121	237016121	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237026645	237026645	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237026667	237026667	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTX2	10651	broad.mit.edu	37	2	177202373	177202373	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8998458	8998458	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9012759	9012759	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9017374	9017374	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9072068	9072068	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9088056	9088056	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089809	9089809	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089921	9089921	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9090347	9090347	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUDENG	55745	broad.mit.edu	37	14	57749651	57749651	+	Splice_Site	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102046895	102046895	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77773203	77773203	+	Intron	SNP	C	G	G	rs112695545		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF5	4617	broad.mit.edu	37	12	81110806	81110806	+	5'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15835207	15835207	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10224829	10224829	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108183535	108183535	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108209097	108209097	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10436512	10436512	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10440957	10440957	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10443489	10443489	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10360771	10360771	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10366672	10366672	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10367998	10367998	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23902517	23902517	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10322308	10322308	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36680075	36680075	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL12A	10627	broad.mit.edu	37	18	3253494	3253494	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL2	4633	broad.mit.edu	37	12	111353639	111353639	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46763549	46763549	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16711277	16711277	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27414224	27414224	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26166213	26166213	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26177727	26177728	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26388535	26388535	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59480399	59480399	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1E	4643	broad.mit.edu	37	15	59528895	59528895	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109847873	109847873	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109865318	109865318	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26443682	26443682	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26500758	26500758	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171259484	171259484	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52720630	52720630	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47365423	47365423	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47432748	47432748	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3089131	3089131	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69935135	69935135	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69956533	69956533	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST2	11143	broad.mit.edu	37	17	47900664	47900664	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62836860	62836860	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48585259	48585259	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40144544	40144544	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA35	60560	broad.mit.edu	37	9	88628828	88628828	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89903345	89903345	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71164432	71164433	+	Intron	INS	-	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71201771	71201771	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101721105	101721105	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78334064	78334064	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444770	78444770	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15608700	15608700	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145267106	145267106	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16935411	16935411	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16942589	16942589	+	5'Flank	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144619263	144619263	+	Intron	SNP	G	A	A	rs57839712		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145080796	145080796	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145080872	145080872	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113078160	113078160	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97031743	97031743	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCK2	8440	broad.mit.edu	37	2	106509318	106509318	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71060482	71060482	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124884987	124884987	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55418211	55418211	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55418214	55418214	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR2	9436	broad.mit.edu	37	6	41318241	41318241	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00188	125144	broad.mit.edu	37	17	16342885	16342885	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00207	388910	broad.mit.edu	37	22	44963606	44963606	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDFIP2	54602	broad.mit.edu	37	13	80122414	80122414	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149907591	149907591	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119059421	119059421	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115769501	115769502	+	Intron	INS	-	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA10	4705	broad.mit.edu	37	2	240933654	240933654	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152484282	152484282	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152496661	152496661	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152531009	152531009	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152581406	152581406	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152581593	152581593	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152586092	152586092	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97334248	97334248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72740798	72740798	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178274590	178274590	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20965451	20965451	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21306014	21306014	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU1	4758	broad.mit.edu	37	6	31829061	31829061	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL3	93082	broad.mit.edu	37	2	97165143	97165143	+	RNA	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24845336	24845336	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098966	178098966	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104157429	104157429	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129739494	129739494	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129743800	129743800	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37060969	37060969	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63769246	63769246	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKG7	4818	broad.mit.edu	37	19	51875446	51875446	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16952929	16952929	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32475389	32475389	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32476636	32476636	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56307303	56307303	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56307653	56307653	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56321267	56321267	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54313598	54313598	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54314121	54314121	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54314470	54314470	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56424579	56424579	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55489136	55489136	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55512228	55512228	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587214	247587214	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56372974	56372974	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539841	56539841	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMU	10874	broad.mit.edu	37	4	56471449	56471449	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC2L	26155	broad.mit.edu	37	1	892383	892383	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC3L	64318	broad.mit.edu	37	10	96093972	96093972	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD1	10392	broad.mit.edu	37	7	30485749	30485749	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26115996	26115996	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139395166	139395166	+	Silent	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2NL	388677	broad.mit.edu	37	1	145281451	145281451	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32166193	32166193	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108059910	108059910	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44556830	44556830	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36339821	36339821	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179526197	179526197	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34851459	34851459	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34874133	34874133	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108508707	108508707	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32505526	32505526	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83992194	83992194	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84446265	84446265	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRN1	51299	broad.mit.edu	37	6	6007028	6007028	+	5'UTR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51254935	51254935	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64453031	64453031	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64461993	64461993	+	Intron	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79276601	79276601	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79947244	79947244	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN3	63899	broad.mit.edu	37	3	93795220	93795220	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603706	5603706	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131720972	131720972	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132123251	132123251	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88575885	88575885	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163318648	163318649	+	Intron	DNP	GG	TT	TT	rs113811450		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163325229	163325229	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71747046	71747046	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69129095	69129095	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134014772	134014772	+	Silent	SNP	A	T	T	rs144444662	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134014781	134014781	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139428518	139428518	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509487	228509487	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228550383	228550383	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133044497	133044497	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97616282	97616282	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870932	123870932	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167642021	167642021	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645751	167645751	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183652319	183652319	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78431305	78431305	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLA1	29789	broad.mit.edu	37	2	174988383	174988383	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624766	53624766	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161953395	161953395	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54141892	54141892	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158548743	158548743	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549249	158549249	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H4	390442	broad.mit.edu	37	14	20711796	20711796	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR12D3	81797	broad.mit.edu	37	6	29343004	29343004	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C9	286362	broad.mit.edu	37	9	107379756	107379756	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835855	247835855	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247921672	247921672	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125240299	125240299	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L3	26735	broad.mit.edu	37	9	125438141	125438141	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125316159	125316159	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982425	57982425	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695436	247695436	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752138	247752138	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248099478	248099478	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166474	248166474	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248246907	248246907	+	Intron	SNP	C	A	A	rs116725644	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343686	248343686	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248309355	248309355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789612	248789612	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458930	248458930	+	5'Flank	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248569465	248569465	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813979	248813979	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737473	248737473	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655069	247655069	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR3A3	8392	broad.mit.edu	37	17	3323849	3323849	+	5'Flank	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371693	55371693	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4E2	26686	broad.mit.edu	37	14	22133668	22133668	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369079	22369079	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22333006	22333006	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20215648	20215648	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5344955	5344955	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4673879	4673879	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4944805	4944805	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52R1	119695	broad.mit.edu	37	11	4824664	4824664	+	3'UTR	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048134	6048134	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58190687	58190687	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55682073	55682073	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C6	283365	broad.mit.edu	37	12	55688179	55688179	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875436	247875436	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875814	247875814	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109585	21109585	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6V1	346517	broad.mit.edu	37	7	142749742	142749742	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B12	219858	broad.mit.edu	37	11	124412862	124412862	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B2	26595	broad.mit.edu	37	11	124252847	124252847	+	Silent	SNP	C	G	G	rs141423425		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777582	123777582	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q2	219957	broad.mit.edu	37	11	57958805	57958805	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31298757	31298757	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31725491	31725491	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24874013	24874013	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24901333	24901333	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL9	114883	broad.mit.edu	37	1	52227619	52227619	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21771697	21771697	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146077054	146077054	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149943104	149943104	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56506584	56506584	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101724571	101724571	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE2B	389860	broad.mit.edu	37	X	55104100	55104100	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE2B	389860	broad.mit.edu	37	X	55104114	55104114	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX3	116337	broad.mit.edu	37	11	124489751	124489751	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6737823	6737823	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39575991	39575991	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97018784	97018784	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176740406	176740406	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176801619	176801619	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25451484	25451484	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205986260	205986260	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP2	10038	broad.mit.edu	37	14	20824169	20824169	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP3	10039	broad.mit.edu	37	3	51978223	51978223	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25075884	25075884	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122269754	122269754	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242066327	242066327	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATZ1	23598	broad.mit.edu	37	22	31723239	31723239	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102562535	102562535	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102562590	102562590	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102566380	102566380	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127253140	127253140	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128692084	128692084	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073414	134073414	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91368764	91368764	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4972444	4972444	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5205817	5205817	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55568648	55568648	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55581695	55581695	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141236898	141236898	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61985377	61985377	+	Nonstop_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67748668	67748668	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209427	140209427	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140223131	140223131	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140589561	140589561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB19P	84054	broad.mit.edu	37	5	140621328	140621328	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140501962	140501962	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140530412	140530412	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531612	140531612	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140794648	140794648	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140724883	140724883	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140726007	140726007	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140735631	140735631	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA6	56109	broad.mit.edu	37	5	140754546	140754546	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140789008	140789008	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC3	5098	broad.mit.edu	37	5	140856119	140856119	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120388169	120388169	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK2	5106	broad.mit.edu	37	14	24568634	24568634	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17849061	17849061	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62904848	62904848	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233353742	233353742	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71570074	71570074	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66620061	66620061	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66633600	66633600	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105193765	105193765	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD4	27250	broad.mit.edu	37	10	112653897	112653897	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6IP	10015	broad.mit.edu	37	3	33863496	33863496	+	Silent	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178883149	178883150	+	Intron	INS	-	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31833887	31833887	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31864460	31864461	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31920547	31920547	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31981119	31981119	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144866042	144866042	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144946727	144946727	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149311868	149311868	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95394456	95394456	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136468561	136468561	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76640517	76640517	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54879918	54879918	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39918815	39918815	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15130333	15130334	+	3'UTR	INS	-	AT	AT	rs149816223	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD9	255762	broad.mit.edu	37	16	22000025	22000025	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56645017	56645017	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8048330	8048330	+	Intron	SNP	G	A	A	rs55690932		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152682230	152682230	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX10	5192	broad.mit.edu	37	1	2339912	2339912	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX11G	92960	broad.mit.edu	37	19	7550711	7550711	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD4	161779	broad.mit.edu	37	15	34396158	34396158	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230459397	230459397	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230486863	230486863	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98155361	98155361	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754364	49754364	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27240793	27240793	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123623386	123623386	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79707403	79707403	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18943785	18943785	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB2	90102	broad.mit.edu	37	3	111631902	111631902	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB3	653583	broad.mit.edu	37	19	44006031	44006031	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYH	5264	broad.mit.edu	37	10	13336600	13336600	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21159358	21159358	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73401164	73401164	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207107855	207107855	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196454981	196454981	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98392715	98392715	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18641506	18641506	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9783262	9783262	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8784871	8784871	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209218816	209218816	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22828728	22828728	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3197873	3197873	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130842171	130842171	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47944214	47944214	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81145701	81145701	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81228586	81228586	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L2	27039	broad.mit.edu	37	5	137243384	137243384	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2	5311	broad.mit.edu	37	4	88959369	88959369	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110457161	110457161	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110502186	110502186	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51483815	51483815	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51484224	51484224	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51881204	51881204	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125299688	125299688	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32945339	32945339	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159488402	159488402	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159519835	159519835	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42293397	42293397	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28763256	28763256	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28829475	28829475	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96005702	96005702	+	Splice_Site	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96014176	96014176	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96018495	96018495	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19496260	19496260	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16838533	16838533	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131955102	131955102	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12008052	12008052	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145804659	145804659	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR5	389158	broad.mit.edu	37	3	146323146	146323146	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48464794	48464794	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129281583	129281583	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190656499	190656499	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190729094	190729094	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76657453	76657453	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L5	5383	broad.mit.edu	37	7	74323196	74323196	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236245	118236245	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNO1	56902	broad.mit.edu	37	2	68389809	68389809	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7618740	7618740	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140374733	140374733	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODXL	5420	broad.mit.edu	37	7	131191400	131191400	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT1	23509	broad.mit.edu	37	20	30816238	30816238	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24721505	24721505	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24761547	24761547	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG2	11232	broad.mit.edu	37	17	62481962	62481962	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121263644	121263644	+	Missense_Mutation	SNP	C	G	G	rs61757738	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113331230	113331230	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134382876	134382876	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP5	51367	broad.mit.edu	37	12	121017278	121017278	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38172752	38172752	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43211893	43211893	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021733	132021733	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287123	16287123	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPBP	5473	broad.mit.edu	37	4	74853130	74853130	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76812711	76812711	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81657181	81657181	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81735156	81735156	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81758915	81758915	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	82089987	82089987	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49632048	49632048	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL1	51645	broad.mit.edu	37	6	36824376	36824376	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102491652	102491652	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4933615	4933615	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4953797	4953797	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1E	22843	broad.mit.edu	37	17	57057364	57057364	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202509287	202509287	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55624154	55624154	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1B	5519	broad.mit.edu	37	11	111626023	111626023	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146435096	146435096	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146435114	146435114	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135745969	135745969	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135768023	135768023	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135797492	135797492	+	Intron	DEL	T	-	-	rs111928165		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63851087	63851087	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1L	55370	broad.mit.edu	37	20	56847873	56847873	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPPDE1	51029	broad.mit.edu	37	1	244857804	244857804	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3347509	3347509	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23523499	23523499	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527708	23527708	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELID2	153768	broad.mit.edu	37	5	145175992	145175992	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186280779	186280779	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57431368	57431368	+	Intron	SNP	T	G	G	rs146918132	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57484091	57484091	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57487235	57487235	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG1	5571	broad.mit.edu	37	12	49398153	49398153	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG1	5571	broad.mit.edu	37	12	49412551	49412551	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23942896	23942896	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	23966452	23966452	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24105638	24105638	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24231531	24231531	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54387575	54387575	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCZ	5590	broad.mit.edu	37	1	2006562	2006562	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30115098	30115098	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37487372	37487372	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48866265	48866265	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35069108	35069108	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35069110	35069110	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35086356	35086356	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20413655	20413655	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3659145	3659145	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNP	5621	broad.mit.edu	37	20	4680497	4680497	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283425	5283425	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275486	71275486	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38A	84950	broad.mit.edu	37	1	52874343	52874343	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF39	55015	broad.mit.edu	37	14	45583383	45583383	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150316592	150316592	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50029453	50029453	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021881	120021881	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36424836	36424836	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126883539	126883539	+	Nonsense_Mutation	SNP	G	T	T	rs75277199		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS27	83886	broad.mit.edu	37	16	2763993	2763993	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSCA	8000	broad.mit.edu	37	8	143763502	143763502	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43375847	43375847	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43585056	43585056	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC1	5700	broad.mit.edu	37	14	90735690	90735690	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54152906	54152906	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPH	5723	broad.mit.edu	37	7	56088770	56088770	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86333332	86333332	+	5'UTR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCD3	55037	broad.mit.edu	37	2	86363607	86363607	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCH1	5727	broad.mit.edu	37	9	98242080	98242080	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTENP1	11191	broad.mit.edu	37	9	33676499	33676499	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117492296	117492296	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27288605	27288605	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87656020	87656020	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87706464	87706464	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70946400	70946400	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70983967	70983967	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198723398	198723398	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8484287	8484287	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8507340	8507340	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8523673	8523673	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8636819	8636819	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128312056	128312056	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157366970	157366970	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157959951	157959951	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15704555	15704555	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71286585	71286585	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40864877	40864877	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40877404	40877404	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40979255	40979255	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41090812	41090812	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41630772	41630772	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121674344	121674344	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUF60	22827	broad.mit.edu	37	8	144902887	144902887	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320978	52320978	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52336186	52336186	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52336205	52336205	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384893	52384893	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64517794	64517794	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163876581	163876581	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122291593	122291593	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107088379	107088379	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107110970	107110970	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136418792	136418792	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136418805	136418805	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB37	326624	broad.mit.edu	37	17	72739511	72739512	+	Intron	INS	-	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135851081	135851081	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135884268	135884268	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220427241	220427241	+	Intron	SNP	G	A	A	rs3211125		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP1	9135	broad.mit.edu	37	17	5271832	5271832	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL2A	11159	broad.mit.edu	37	2	114390335	114390335	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL3	285282	broad.mit.edu	37	3	120428434	120428434	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD1	5810	broad.mit.edu	37	5	34911807	34911807	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68935686	68935686	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95479852	95479852	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34823763	34823763	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36194252	36194252	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20447416	20447416	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP10	57610	broad.mit.edu	37	16	67763741	67763741	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170640726	170640726	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5941646	5941646	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173782498	173782498	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173879384	173879384	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEFL1	51195	broad.mit.edu	37	17	38345517	38345517	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204312898	204312898	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38487575	38487575	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES3	5920	broad.mit.edu	37	11	63306870	63306870	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES3	5920	broad.mit.edu	37	11	63313776	63313776	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178414924	178414924	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178423843	178423843	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6148146	6148146	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114364967	114364967	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114400034	114400034	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM23	55147	broad.mit.edu	37	14	23374637	23374637	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145651095	145651095	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50107848	50107848	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP1	5947	broad.mit.edu	37	3	139237323	139237323	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139173649	139173649	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48387868	48387868	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPJL	11317	broad.mit.edu	37	20	43940738	43940738	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46214582	46214582	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	31887272	31887272	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10124180	10124180	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL5	9400	broad.mit.edu	37	17	73647227	73647227	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312794	79312794	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385937	79385937	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REPS1	85021	broad.mit.edu	37	6	139238640	139238640	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39350691	39350692	+	Intron	INS	-	G	G	rs72604322	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC4	5984	broad.mit.edu	37	3	186507926	186507926	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL2	10739	broad.mit.edu	37	22	32596100	32596100	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109693843	109693843	+	5'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108486289	108486289	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101020662	101020662	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101117511	101117511	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116277143	116277143	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72751215	72751215	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72944962	72944962	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240933569	240933569	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240933890	240933890	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241083184	241083184	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63173839	63173839	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63174086	63174086	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49574638	49574638	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCE	6006	broad.mit.edu	37	1	25701839	25701839	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB3	22836	broad.mit.edu	37	5	95072761	95072761	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT1	55288	broad.mit.edu	37	17	30538050	30538050	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33482907	33482907	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12800611	12800611	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38953092	38953092	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72960917	72960917	+	Splice_Site	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	73110206	73110206	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105017428	105017428	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105841	105105841	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105256934	105256934	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105261114	105261114	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21053585	21053585	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK2	8767	broad.mit.edu	37	8	90775204	90775204	+	Silent	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPPLY2	134701	broad.mit.edu	37	6	84563838	84563838	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87096065	87096065	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87315068	87315068	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978753	20978753	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF152	220441	broad.mit.edu	37	18	59511421	59511432	+	Intron	DEL	AGGAAGGGAAGG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74152362	74152362	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF19A	25897	broad.mit.edu	37	8	101271092	101271092	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF19B	127544	broad.mit.edu	37	1	33410993	33410993	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF43	54894	broad.mit.edu	37	17	56434993	56434993	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124761245	124761245	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1B	152015	broad.mit.edu	37	3	125701153	125701153	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL6	6128	broad.mit.edu	37	12	112844583	112844583	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166923836	166923836	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTN	126638	broad.mit.edu	37	1	152130565	152130565	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGD	58528	broad.mit.edu	37	6	90077751	90077751	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGD	58528	broad.mit.edu	37	6	90077868	90077868	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAGD	58528	broad.mit.edu	37	6	90087611	90087611	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3P1	730092	broad.mit.edu	37	16	21812117	21812117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57272859	57272859	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36466706	36466706	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155292331	155292331	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38968507	38968507	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237906994	237906994	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33928134	33928134	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34102816	34102816	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173419	51173419	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55168881	55168881	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169644379	169644379	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92763106	92763106	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92730578	92730578	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30L	79685	broad.mit.edu	37	5	153830579	153830579	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55748241	55748241	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1B	51128	broad.mit.edu	37	5	133942682	133942682	+	Silent	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100598282	100598282	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200245283	200245283	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78165533	78165533	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158842267	158842267	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38770320	38770320	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38951721	38951721	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622506	38622506	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167273453	167273453	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE2	57758	broad.mit.edu	37	11	9096194	9096194	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100728092	100728092	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50266423	50266423	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243430955	243430956	+	Intron	INS	-	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHB	6390	broad.mit.edu	37	1	17354337	17354337	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71394403	71394403	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L3	266629	broad.mit.edu	37	22	30866364	30866364	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121671721	121671721	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83739785	83739785	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84702318	84702318	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPHS1	22929	broad.mit.edu	37	10	13380835	13380835	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55872910	55872910	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT1	1731	broad.mit.edu	37	16	30393197	30393197	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT2	4735	broad.mit.edu	37	2	242283119	242283119	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42382125	42382125	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT9	10801	broad.mit.edu	37	17	75398186	75398186	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERHL	94009	broad.mit.edu	37	22	42905054	42905054	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERP1	27230	broad.mit.edu	37	3	150263591	150263591	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94955987	94955987	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264326	61264326	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310740	61310740	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINC1	462	broad.mit.edu	37	1	173881236	173881236	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINC1	462	broad.mit.edu	37	1	173883944	173883944	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167182921	167182921	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180013968	180013968	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42281814	42281814	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42281875	42281875	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD5	55209	broad.mit.edu	37	3	9515236	9515236	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26689003	26689003	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19407828	19407828	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFN	2810	broad.mit.edu	37	1	27189778	27189778	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP5	6425	broad.mit.edu	37	10	99531239	99531239	+	Missense_Mutation	SNP	C	T	T	rs145515400	byFrequency	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS12	140890	broad.mit.edu	37	5	65474476	65474476	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46320468	46320468	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46320470	46320470	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS8	6433	broad.mit.edu	37	12	132262741	132262741	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCA	6442	broad.mit.edu	37	17	48245235	48245235	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14911993	14911994	+	Intron	INS	-	C	C	rs147428309	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGEF	26084	broad.mit.edu	37	3	153847397	153847397	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67108564	67108564	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67109129	67109129	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134495930	134495930	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4A	63898	broad.mit.edu	37	8	19180892	19180893	+	Intron	INS	-	T	T	rs79641928		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82331394	82331394	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D4B	387694	broad.mit.edu	37	10	82369322	82369322	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL2	6456	broad.mit.edu	37	9	17786510	17786510	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148388385	148388385	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70319093	70319093	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHBG	6462	broad.mit.edu	37	17	7534966	7534966	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13329009	13329009	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT1	6470	broad.mit.edu	37	17	18233860	18233860	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72822596	72822596	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918441	51918441	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52004649	52004649	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52004653	52004653	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC14	100049587	broad.mit.edu	37	19	52147182	52147182	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52130480	52130480	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51647654	51647654	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51629227	51629227	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK2	23235	broad.mit.edu	37	11	111575717	111575717	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164766995	164766995	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46262170	46262170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36181812	36181812	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103718440	103718440	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC11A2	4891	broad.mit.edu	37	12	51394078	51394078	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48539034	48539034	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A8	84561	broad.mit.edu	37	3	124854796	124854796	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247877	43247877	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A6	9120	broad.mit.edu	37	17	66267264	66267264	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25776765	25776765	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22396298	22396298	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119014665	119014665	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15064958	15064958	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63066983	63066983	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64359264	64359264	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A13	9390	broad.mit.edu	37	3	38317320	38317320	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116609591	116609591	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19702038	19702038	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A44	9673	broad.mit.edu	37	1	156170305	156170305	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107350490	107350490	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107352992	107352992	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103014987	103014987	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205886345	205886345	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A3	11000	broad.mit.edu	37	1	153751428	153751428	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40422292	40422292	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118147693	118147693	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC31A2	1318	broad.mit.edu	37	9	115923693	115923693	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234245859	234245860	+	Intron	INS	-	GAG	GAG	rs144122757	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150677979	150677979	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A1	54020	broad.mit.edu	37	21	43963358	43963358	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46582801	46582801	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47182432	47182432	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A9	55334	broad.mit.edu	37	14	69924955	69924955	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220505493	220505493	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72306384	72306384	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A5	57835	broad.mit.edu	37	2	74474317	74474317	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51845937	51845937	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A2	6524	broad.mit.edu	37	16	31498804	31498804	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108618157	108618157	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55690840	55690840	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28545949	28545949	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20658768	20658768	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216426	170216426	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33349427	33349427	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40342375	40342375	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40438529	40438529	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111873979	111873979	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103321031	103321031	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103120023	103120023	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471738	21471738	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20890032	20890032	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101599297	101599297	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101834473	101834473	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33750096	33750096	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093540	168093540	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168139250	168139250	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168250306	168250306	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168250562	168250562	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84453529	84453529	+	3'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86368537	86368537	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLK	9748	broad.mit.edu	37	10	105781740	105781740	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2182167	2182167	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47705006	47705006	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56563579	56563579	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160129835	160129835	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17897308	17897308	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18878006	18878006	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70352839	70352839	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70477403	70477403	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF2	64750	broad.mit.edu	37	17	62551057	62551057	+	Silent	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88392939	88392939	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD5	10322	broad.mit.edu	37	2	73450603	73450603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49831474	49831474	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25465610	25465610	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25318311	25318311	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRK	54861	broad.mit.edu	37	3	43381716	43381716	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP27	11017	broad.mit.edu	37	2	70121064	70121064	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP27	11017	broad.mit.edu	37	2	70123542	70123542	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51095742	51095742	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51314968	51314968	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664698	51664698	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX2	6643	broad.mit.edu	37	5	122161712	122161712	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX4	8723	broad.mit.edu	37	3	125188347	125188347	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108459118	108459118	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7640086	7640086	+	Missense_Mutation	SNP	G	A	A	rs35727450		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106826570	106826571	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107005426	107005426	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121347388	121347388	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121414162	121414162	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121448208	121448208	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39249779	39249779	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24661186	24661186	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231331600	231331600	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231367693	231367693	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP7	121340	broad.mit.edu	37	12	53722618	53722618	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP8	221833	broad.mit.edu	37	7	20826442	20826442	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP8	221833	broad.mit.edu	37	7	20826592	20826592	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118530429	118530429	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118634396	118634396	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22676710	22676710	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN5	494197	broad.mit.edu	37	X	52825497	52825497	+	3'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24585622	24585622	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217934704	217934704	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52917722	52917722	+	5'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52944959	52944959	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	95011344	95011344	+	Splice_Site	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATC1	375686	broad.mit.edu	37	8	145094966	145094966	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE2	441273	broad.mit.edu	37	7	102197435	102197435	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72334417	72334417	+	RNA	SNP	G	C	C	rs3973837		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228882499	228882499	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28986805	28986805	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4349546	4349546	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167656000	167656000	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167658772	167658772	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14278235	14278235	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139316728	139316728	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2D	6703	broad.mit.edu	37	1	153012868	153012868	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2F	6705	broad.mit.edu	37	1	153085330	153085330	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB2	84727	broad.mit.edu	37	12	6981479	6981479	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158618181	158618181	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158631133	158631133	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54853248	54853248	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54856193	54856193	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45773989	45773989	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801720	45801720	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45801959	45801959	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30721880	30721880	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCIN1	80725	broad.mit.edu	37	17	36709061	36709061	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SREBF2	6721	broad.mit.edu	37	22	42264729	42264729	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64505790	64505790	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP2	23380	broad.mit.edu	37	1	206619503	206619503	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP19	6728	broad.mit.edu	37	5	112197008	112197008	+	5'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2812541	2812541	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182763764	182763764	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182786826	182786826	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	28011471	28011471	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSR2	6746	broad.mit.edu	37	1	155981681	155981681	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53055629	53055629	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107423274	107423274	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC1	55808	broad.mit.edu	37	17	74622257	74622257	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC1	55808	broad.mit.edu	37	17	74623085	74623085	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC1	55808	broad.mit.edu	37	17	74625594	74625594	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7L	54879	broad.mit.edu	37	1	113126701	113126701	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104031753	104031753	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33684072	33684072	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD3	10948	broad.mit.edu	37	17	37815244	37815244	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191850245	191850245	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56740466	56740466	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT4	6775	broad.mit.edu	37	2	191894687	191894687	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63967898	63967898	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23811831	23811831	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43629042	43629042	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125465807	125465807	+	5'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX3	6809	broad.mit.edu	37	11	59549122	59549122	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP2	6813	broad.mit.edu	37	19	7705871	7705871	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53076912	53076912	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120764330	120764330	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1L1	283507	broad.mit.edu	37	13	41486624	41486624	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70513116	70513116	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	45021739	45021739	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91832754	91832754	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29762821	29762821	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29821030	29821030	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138281194	138281194	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58461892	58461892	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYDE1	85360	broad.mit.edu	37	19	15219030	15219030	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152590421	152590421	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64407334	64407334	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64447873	64447874	+	Missense_Mutation	DNP	GA	TC	TC			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64449499	64449499	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64473854	64473854	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64635582	64635582	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33410885	33410885	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33411147	33411147	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGR2	9144	broad.mit.edu	37	17	76167873	76167873	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNRG	11276	broad.mit.edu	37	17	35945442	35945442	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYPL2	284612	broad.mit.edu	37	1	110022119	110022119	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85422404	85422404	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB2	23118	broad.mit.edu	37	6	149700305	149700305	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123846369	123846369	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123976043	123976043	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACO1	51204	broad.mit.edu	37	17	61678725	61678725	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29992976	29992976	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29994048	29994048	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK2	9344	broad.mit.edu	37	16	29994517	29994517	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32800459	32800459	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33455211	33455211	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122634761	122634761	+	3'UTR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635169	122635169	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN1	83940	broad.mit.edu	37	8	125527931	125527931	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN2	9797	broad.mit.edu	37	3	10318036	10318036	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN2	9797	broad.mit.edu	37	3	10318219	10318219	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28887555	28887555	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13288654	13288654	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCA	6902	broad.mit.edu	37	5	77004067	77004067	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBK1	29110	broad.mit.edu	37	12	64878273	64878273	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119467273	119467273	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79278800	79278800	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59543335	59543335	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139516553	139516553	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA2	6919	broad.mit.edu	37	20	62703589	62703589	+	3'UTR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145851019	145851019	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF21	6943	broad.mit.edu	37	6	134210430	134210430	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF21	6943	broad.mit.edu	37	6	134210519	134210519	+	5'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7	6932	broad.mit.edu	37	5	133482071	133482071	+	3'UTR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152083102	152083102	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96136927	96136927	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD6	221400	broad.mit.edu	37	6	46659518	46659518	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104470694	104470694	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD1	7003	broad.mit.edu	37	11	12951949	12951949	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20858996	20858996	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF2IP	54386	broad.mit.edu	37	16	75688085	75688085	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56657049	56657049	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50805702	50805703	+	Frame_Shift_Ins	INS	-	T	T	rs143212621		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFE3	7030	broad.mit.edu	37	X	48891690	48891690	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFG	10342	broad.mit.edu	37	3	100463679	100463679	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92182368	92182368	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LY	90655	broad.mit.edu	37	Y	3447318	3447318	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2298208	2298208	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2376132	2376132	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133925225	133925225	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134031879	134031879	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43520107	43520107	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43793742	43793742	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169629765	169629765	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169632128	169632128	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24321531	24321531	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24357994	24357994	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THTPA	79178	broad.mit.edu	37	14	24013155	24013155	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD3	220359	broad.mit.edu	37	11	65123348	65123348	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGIT	201633	broad.mit.edu	37	3	114018393	114018393	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378570	156378570	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56815001	56815002	+	Intron	INS	-	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54173469	54173469	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPARP	25976	broad.mit.edu	37	3	156413761	156413761	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70342662	70342662	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82333935	82333935	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166964634	166964634	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF4	81501	broad.mit.edu	37	8	105360888	105360888	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30729322	30729322	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81638860	81638860	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC1	23023	broad.mit.edu	37	3	129389319	129389319	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO6	55374	broad.mit.edu	37	5	140021706	140021706	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM100	55273	broad.mit.edu	37	17	53798105	53798105	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM109	79073	broad.mit.edu	37	11	60687408	60687408	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM111	55831	broad.mit.edu	37	3	10018617	10018617	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44287726	44287726	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM131	23505	broad.mit.edu	37	2	98373611	98373611	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129563096	129563096	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694113	129694113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159162565	159162565	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM183A	92703	broad.mit.edu	37	1	202977009	202977009	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184C	55751	broad.mit.edu	37	4	148555046	148555046	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108468025	108468025	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100270784	100270784	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94807631	94807631	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM68	137695	broad.mit.edu	37	8	56675493	56675493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133740077	133740077	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD1	388364	broad.mit.edu	37	17	28643836	28643836	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD1	7111	broad.mit.edu	37	9	100308482	100308482	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68964804	68964804	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101287330	101287330	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117793890	117793890	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117840257	117840257	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170945764	170945764	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	171131191	171131191	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9435689	9435689	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40521834	40521834	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175348666	175348667	+	Intron	DNP	CC	AG	AG	rs3737930	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218696383	218696383	+	Intron	SNP	G	A	A	rs139160869	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32046820	32046820	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25639969	25639969	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133342989	133342989	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1A	1861	broad.mit.edu	37	9	132576319	132576319	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX4	9878	broad.mit.edu	37	14	21963405	21963405	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP2	7159	broad.mit.edu	37	1	224009297	224009297	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577142	7577143	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189526215	189526215	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113716636	113716636	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72425109	72425109	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144288448	144288448	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186291610	186291610	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20010405	20010405	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20067056	20067056	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970463	10970463	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10971897	10971897	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30366577	30366577	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202277618	202277618	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17195666	17195666	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17201212	17201212	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110100433	110100433	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110131136	110131136	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30131761	30131761	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM8	81603	broad.mit.edu	37	10	104414408	104414408	+	Splice_Site	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068317	189068317	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14293248	14293248	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14390525	14390525	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT11	60487	broad.mit.edu	37	6	126329797	126329797	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72975641	72975641	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38211588	38211588	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38357400	38357400	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135610372	135610372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49704027	49704027	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142611889	142611889	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98565099	98565099	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45149030	45149030	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2105464	2105465	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN34	79042	broad.mit.edu	37	19	54695775	54695775	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG101	7251	broad.mit.edu	37	11	18541230	18541230	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65714762	65714762	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65721175	65721175	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51610470	51610470	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSN	7247	broad.mit.edu	37	2	122522735	122522735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120480008	120480008	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN31	6302	broad.mit.edu	37	12	58140071	58140071	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL5	85453	broad.mit.edu	37	8	98289327	98289327	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75107924	75107924	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166781139	166781139	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138833140	138833140	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33037793	33037793	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147737770	147737770	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC31	64427	broad.mit.edu	37	2	74719278	74719278	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38498419	38498419	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76201685	76201685	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76238103	76238103	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30521613	30521613	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179400235	179400235	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179403426	179403426	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179408911	179408911	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179434136	179434136	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179434868	179434868	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179437530	179437530	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179438786	179438786	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179450012	179450012	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179465875	179465875	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179517629	179517629	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179534337	179534337	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179558565	179558565	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179568768	179568768	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179576050	179576050	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611124	179611124	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611757	179611757	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57594520	57594520	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB2A	7280	broad.mit.edu	37	6	3155153	3155153	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190903695	190903695	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22836190	22836190	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158910770	158910770	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48115327	48115327	+	Splice_Site	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139568923	139568923	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD1	7296	broad.mit.edu	37	12	104742006	104742006	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88924377	88924377	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68501192	68501192	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D4	51619	broad.mit.edu	37	7	43988301	43988301	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109927832	109927832	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5530649	5530649	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103372760	103372760	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK1	83549	broad.mit.edu	37	9	134406104	134406104	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70460323	70460323	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70503719	70503719	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70503723	70503723	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69874926	69874926	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70070021	70070021	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34802578	34802578	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17785582	17785582	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33486595	33486595	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33513716	33513716	+	3'UTR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73048713	73048713	+	Splice_Site	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73053062	73053062	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96222724	96222724	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96222905	96222905	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35406824	35406824	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35579563	35579563	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73813435	73813435	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229783448	229783448	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216495260	216495260	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17214816	17214816	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113679905	113679905	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640155	57640155	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP30	84749	broad.mit.edu	37	12	109494575	109494575	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58332590	58332590	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61632995	61632995	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75280781	75280781	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5042598	5042598	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52605336	52605336	+	3'UTR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30205384	30205384	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106761591	106761591	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	103035392	103035392	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	105222553	105222553	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10541912	10541913	+	IGR	DEL	AG	-	-	rs10535105		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107253688	107253688	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111421491	111421491	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	122379147	122379147	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16350731	16350731	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	20939658	20939658	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22498319	22498319	+	IGR	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31479433	31479433	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31893291	31893291	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36812570	36812570	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38567892	38567892	+	IGR	DEL	G	-	-	rs150659523		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38599125	38599125	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978012	38978012	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38990149	38990149	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39006302	39006302	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42358666	42358666	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43199591	43199591	+	IGR	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44301694	44301694	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54171117	54171117	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6679166	6679166	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80329205	80329205	+	IGR	SNP	G	T	T	rs151250158	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82758423	82758423	+	IGR	DEL	G	-	-	rs61062436		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8328712	8328713	+	IGR	INS	-	T	T	rs138260727	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85759069	85759069	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	89852953	89852953	+	IGR	SNP	G	A	A	rs75923441	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	95056092	95056092	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	95468710	95468710	+	IGR	DEL	A	-	-	rs66565292		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9765590	9765590	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	105175639	105175641	+	IGR	DEL	AAG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106408099	106408099	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119883035	119883035	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123180499	123180499	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	125938493	125938493	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127811658	127811658	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130916882	130916882	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15512543	15512543	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17073602	17073602	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23426157	23426157	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28579102	28579102	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183270	39183270	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48649504	48649504	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49059255	49059255	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198068	55198068	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234903	55234903	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56143558	56143559	+	IGR	DNP	CC	AA	AA	rs74603674		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58117037	58117037	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	61756437	61756437	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	7140234	7140234	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71870622	71870622	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79361073	79361073	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87619919	87619919	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89372434	89372434	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90015918	90015918	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95043236	95043236	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116204166	116204166	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126995745	126995745	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127802305	127802305	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128825294	128825294	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	14869798	14869798	+	IGR	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	20300033	20300033	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30136122	30136122	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34464327	34464327	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965115	43965115	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	54281529	54281529	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5441463	5441463	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63449473	63449473	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	6887636	6887636	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187772	79187772	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90854151	90854151	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	100239075	100239075	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19468060	19468060	+	IGR	SNP	G	C	C	rs145232413	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19700888	19700888	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22203059	22203059	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31645173	31645173	+	IGR	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40820529	40820529	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	46341553	46341553	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61970683	61970683	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63644280	63644280	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63754358	63754358	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64550024	64550024	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86219752	86219753	+	IGR	INS	-	GC	GC	rs1928134		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97587281	97587282	+	IGR	INS	-	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19421569	19421569	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20098046	20098046	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148104	20148104	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22079991	22079991	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23704424	23704424	+	IGR	DEL	A	-	-	rs34181212		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25900589	25900589	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142542	29142542	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30491967	30491967	+	IGR	DEL	G	-	-	rs78481916		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52714936	52714936	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	53849133	53849133	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	56326544	56326544	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83159397	83159397	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87773700	87773700	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88066986	88066986	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97117212	97117212	+	IGR	DEL	C	-	-	rs35045933		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99098333	99098333	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20122037	20122037	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20192781	20192781	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20399031	20399031	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31127325	31127325	+	IGR	SNP	A	T	T	rs144607658	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32278793	32278793	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	51472527	51472527	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77271958	77271958	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84722153	84722153	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84809871	84809871	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84980952	84980952	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89503832	89503832	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97444316	97444316	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17056333	17056333	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	25568546	25568546	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26375088	26375088	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26522553	26522553	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32182796	32182796	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32451008	32451008	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849289	32849289	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32850803	32850803	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859164	32859164	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366718	33366718	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490078	33490078	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33497943	33497943	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33503630	33503630	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33555315	33555315	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605335	33605335	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34481623	34481623	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34956552	34956552	+	IGR	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48751868	48751868	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48884058	48884058	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49462148	49462148	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52676287	52676287	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	54821971	54821971	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	66148350	66148350	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73177655	73177655	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269276	76269276	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82277449	82277449	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86046822	86046822	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9753346	9753346	+	IGR	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20634682	20634682	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21549584	21549584	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21554257	21554257	+	IGR	SNP	A	C	C	rs148730098	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22216929	22216930	+	IGR	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25280715	25280715	+	IGR	SNP	A	G	G	rs78549288		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44925334	44925335	+	IGR	DEL	GT	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	47594304	47594304	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53273149	53273149	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54607003	54607005	+	IGR	DEL	TTC	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54847955	54847955	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60364111	60364111	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	61688375	61688375	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10725069	10725069	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11610241	11610241	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919509	13919509	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919520	13919520	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22247581	22247581	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23679085	23679085	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24412011	24412011	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45211876	45211876	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57445961	57445961	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60109796	60109796	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61234251	61234251	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15027731	15027731	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15038249	15038249	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19479024	19479024	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22398291	22398291	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22790655	22790655	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23041010	23041010	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688025	23688025	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29282944	29282944	+	IGR	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31186137	31186137	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31457531	31457531	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31557965	31557965	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31558688	31558688	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31715828	31715828	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36174864	36174864	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37784370	37784370	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43877535	43877535	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44977239	44977239	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	49526043	49526043	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53268641	53268641	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106117887	106117887	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433961	106433961	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106623601	106623601	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	110330525	110330525	+	IGR	DEL	A	-	-	rs59540251		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	112696686	112696686	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120139785	120139785	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120693579	120693579	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121244883	121244883	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121478656	121478656	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13141740	13141740	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143544366	143544366	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149091366	149091366	+	IGR	SNP	A	T	T	rs76123478		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149302689	149302689	+	IGR	DEL	A	-	-	rs140796132		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152475813	152475813	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152996759	152996759	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158146417	158146417	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158267739	158267740	+	IGR	INS	-	A	A	rs113869696		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158778741	158778741	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159568934	159568934	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159583173	159583173	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160636931	160636931	+	IGR	DEL	C	-	-	rs113723113		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163250417	163250417	+	IGR	DEL	A	-	-	rs35043833		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164312375	164312375	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165077571	165077571	+	IGR	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166415668	166415668	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166542375	166542375	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168352563	168352563	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16878940	16878940	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172718444	172718444	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175742421	175742421	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177529182	177529183	+	IGR	DEL	GG	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	184058563	184058563	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	19119098	19119098	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194580920	194580920	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203061078	203061078	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20788023	20788023	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208180232	208180232	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	210456139	210456139	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215589124	215589124	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	218438198	218438198	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221106467	221106467	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224051936	224051936	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224086536	224086536	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227627184	227627184	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228823505	228823505	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228929053	228929053	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229824954	229824954	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	230103037	230103037	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233011307	233011307	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238216325	238216325	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238433799	238433800	+	IGR	DNP	CA	AT	AT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240176264	240176264	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248503486	248503486	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29668309	29668309	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	36137221	36137221	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37774280	37774280	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40600512	40600512	+	IGR	SNP	C	A	A	rs77232576		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4977220	4977220	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50836290	50836290	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50836490	50836490	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	82470159	82470159	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87650597	87650597	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	94768174	94768174	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	9499633	9499633	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10839247	10839247	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12274374	12274374	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12390749	12390749	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22095545	22095545	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22107801	22107801	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29582933	29582933	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873206	29873206	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874400	29874400	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36041024	36041025	+	IGR	DEL	TG	-	-	rs149200239		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36059467	36059467	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38353557	38353557	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47931086	47931086	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49947725	49947726	+	IGR	INS	-	G	G	rs149719026	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53558391	53558391	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6220803	6220803	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10098022	10098022	+	IGR	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10141581	10141581	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899821	10899821	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11154365	11154365	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899032	14899032	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15373376	15373376	+	IGR	SNP	C	A	A	rs148068441	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21132004	21132004	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	29177171	29177172	+	IGR	DEL	TG	-	-	rs71844435		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40271109	40271109	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350127	16350127	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27474362	27474362	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32577051	32577051	+	IGR	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35362662	35362662	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35561361	35561361	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108697374	108697374	+	IGR	DEL	T	-	-	rs5833272		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	11492002	11492002	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118170551	118170551	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119456218	119456218	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124519824	124519824	+	IGR	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130385038	130385038	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131258168	131258168	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132113157	132113157	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132144315	132144315	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132145585	132145585	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132357625	132357625	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383981	132383981	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132844878	132844878	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133036532	133036532	+	IGR	SNP	G	T	T	rs139139025	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133118981	133118981	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13317089	13317089	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136655591	136655591	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136818480	136818480	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14886244	14886244	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	153797823	153797826	+	IGR	DEL	TTCC	-	-	rs112807668		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154278534	154278534	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154278906	154278906	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162135130	162135130	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162138542	162138542	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	165146486	165146486	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16587544	16587544	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	165898480	165898480	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570740	168570740	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177704481	177704481	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	178042932	178042932	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	178043022	178043022	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180758379	180758379	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181265800	181265800	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188690448	188690448	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189043052	189043052	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192568379	192568379	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	193782730	193782730	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052565	195052565	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210045352	210045352	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219706502	219706502	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221370591	221370591	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221528028	221528028	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226880870	226880870	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30179841	30179841	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35959594	35959594	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	37863152	37863152	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	45223663	45223663	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	51953409	51953409	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57275787	57275787	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60910136	60910136	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	64633846	64633846	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6599640	6599640	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72153487	72153487	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7434226	7434226	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7526355	7526356	+	IGR	DNP	GG	AT	AT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79326224	79326224	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81033561	81033561	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424343	81424343	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	82112300	82112300	+	IGR	DEL	T	-	-	rs35738227		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84316698	84316698	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85143532	85143532	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91777948	91777948	+	IGR	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91797973	91797973	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872464	91872464	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872947	91872948	+	IGR	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95403516	95403516	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96369880	96369880	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96521596	96521596	+	IGR	SNP	C	T	T	rs151242024		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97693468	97693468	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	101738296	101738299	+	IGR	DEL	TTGT	-	-	rs146930643		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103004594	103004594	+	IGR	DEL	A	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103415276	103415276	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109533213	109533213	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11941450	11941450	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11951488	11951488	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122036810	122036810	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125422317	125422317	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	131245600	131245600	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133913963	133913963	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	134041333	134041334	+	IGR	INS	-	A	A	rs139785967	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139493524	139493524	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	141190144	141190144	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	151899648	151899648	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	153070	153070	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174066576	174066576	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177281585	177281585	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177765823	177765828	+	IGR	DEL	TGTGTG	-	-	rs76951388		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179758567	179758567	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186407658	186407658	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187045783	187045783	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191139963	191139963	+	IGR	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	193678944	193678944	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194283832	194283833	+	IGR	DNP	TG	AC	AC			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	20575796	20575796	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26057600	26057600	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27047058	27047058	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34716298	34716298	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	37012449	37012449	+	IGR	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40364518	40364518	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40882118	40882118	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46443045	46443045	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	53098462	53098462	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	6004834	6004834	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67316249	67316249	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	69017059	69017059	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72242936	72242936	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	73754467	73754467	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83790643	83790643	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86744563	86744563	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87848107	87848107	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88999006	88999006	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90283662	90283663	+	IGR	INS	-	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069906	96069906	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96326212	96326212	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96387028	96387028	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96472879	96472879	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11374105	11374105	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119772297	119772300	+	IGR	DEL	CTGA	-	-	rs72209094		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125539501	125539501	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	127485546	127485546	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13249596	13249596	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	136101970	136101970	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139233959	139233959	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139795801	139795801	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	140554560	140554560	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154978254	154978255	+	IGR	INS	-	T	T	rs139982887	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161159662	161159662	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17157468	17157468	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	172172057	172172057	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	176416119	176416119	+	IGR	SNP	A	T	T	rs142549370	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182780043	182780043	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189220685	189220685	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190194353	190194354	+	IGR	DEL	AC	-	-	rs147238995		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190200938	190200938	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190589733	190589733	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190647812	190647812	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190676442	190676442	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24501305	24501305	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	25728613	25728616	+	IGR	DEL	TGGT	-	-	rs148596292		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27308109	27308109	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28293356	28293356	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28922	28922	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012767	33012767	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43390575	43390575	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	44972343	44972343	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216550	64216550	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66082649	66082649	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69745715	69745715	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	71287459	71287459	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	81000864	81000864	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9032490	9032490	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9704618	9704618	+	IGR	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	106530874	106530874	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10664550	10664550	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119567310	119567310	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126847801	126847801	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126847839	126847839	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330179	130330179	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330877	130330877	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130344348	130344348	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13379783	13379783	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13511803	13511803	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	139435371	139435371	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	147302459	147302459	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152474200	152474200	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157961393	157961393	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16059816	16059816	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16291582	16291582	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173940493	173940493	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910019	25910019	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910864	25910864	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26133506	26133506	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33387277	33387277	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	35356859	35356859	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40067213	40067213	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7115057	7115057	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	72804706	72804706	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97728234	97728234	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	110567133	110567133	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	11787163	11787163	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14471751	14471751	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153082477	153082477	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18928488	18928488	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23654163	23654163	+	IGR	DEL	T	-	-	rs35060593		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	26340098	26340098	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967742	39967742	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40838031	40838031	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4659247	4659250	+	IGR	DEL	TTTG	-	-	rs71787854		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	47406693	47406693	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48117111	48117111	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49775204	49775204	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50946166	50946166	+	IGR	DEL	T	-	-	rs11287293		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	51412871	51412871	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54413246	54413246	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	62365247	62365247	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71760975	71760975	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80036663	80036663	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85997555	85997555	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87478562	87478562	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10491350	10491350	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	117523751	117523751	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121164412	121164412	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143839723	143839723	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27064232	27064232	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	30308690	30308690	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31027325	31027325	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32401152	32401152	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	32511559	32511559	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	33903799	33903799	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36084722	36084722	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37706567	37706567	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42834780	42834780	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52518097	52518097	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56356819	56356819	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61066642	61066642	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816526	61816526	+	IGR	SNP	C	G	G	rs10258411	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61824062	61824062	+	IGR	SNP	T	A	A	rs142271530	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910380	62910380	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910455	62910455	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63022903	63022903	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63459446	63459446	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63575150	63575150	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65262598	65262598	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65279243	65279243	+	IGR	SNP	A	G	G	rs146736701	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68723946	68723946	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68876806	68876806	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7119318	7119318	+	IGR	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102136021	102136021	+	IGR	DEL	T	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106207999	106207999	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136406532	136406532	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137002348	137002348	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138431041	138431041	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139556387	139556387	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36953042	36953042	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36953072	36953072	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	41369341	41369341	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43358927	43358927	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43529576	43529576	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43529634	43529634	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	46841617	46841617	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47333165	47333165	+	IGR	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47350775	47350775	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5707038	5707038	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58122741	58122741	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65358146	65358146	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74979779	74979779	+	IGR	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77515381	77515381	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82817606	82817606	+	IGR	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204280	83204280	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86753904	86753904	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86753927	86753927	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86754063	86754063	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87055537	87055537	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90255963	90255963	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	9205709	9205709	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92930033	92930033	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98397723	98397723	+	IGR	SNP	A	G	G	rs76242105	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	116423152	116423152	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120414067	120414067	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29708957	29708957	+	IGR	SNP	G	A	A	rs139223009	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35914214	35914214	+	IGR	SNP	T	C	C	rs112923266	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67334147	67334147	+	IGR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401354	68401354	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401356	68401356	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405850	68405850	+	IGR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68415066	68415066	+	IGR	SNP	C	T	T	rs34477179		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68420208	68420208	+	IGR	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68421635	68421635	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68490103	68490103	+	IGR	SNP	T	C	C	rs112960197		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84701422	84701422	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	91489602	91489602	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	96678691	96678691	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106808167	106808167	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121728281	121728281	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	133406469	133406469	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134774606	134774606	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811904	134811904	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136744372	136744372	+	IGR	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	41958078	41958078	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58011202	58011202	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6340098	6340098	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63652347	63652347	+	IGR	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65294953	65294953	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75555315	75555315	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78018839	78018839	+	IGR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816542	79816542	+	IGR	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79816916	79816916	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829798	79829798	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829958	79829958	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	95228650	95228650	+	IGR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28722909	28722909	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	58998208	58998208	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59015933	59015933	+	IGR	SNP	A	C	C	rs77534400		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9860925	9860925	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9944006	9944006	+	IGR	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9956844	9956844	+	IGR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP4	8674	broad.mit.edu	37	1	171678786	171678786	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136804088	136804088	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82835163	82835164	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDAC3	7419	broad.mit.edu	37	8	42252647	42252647	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2652662	2652662	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R2	317701	broad.mit.edu	37	19	53762283	53762283	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118939979	118939979	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62221815	62221815	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12342740	12342740	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12475197	12475197	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS37C	55048	broad.mit.edu	37	11	60901509	60901509	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150064256	150064256	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184567655	184567655	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22128198	22128198	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98750290	98750290	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	124015773	124015773	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2L	402117	broad.mit.edu	37	2	215278870	215278870	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49842351	49842351	+	Silent	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6058394	6058394	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6140546	6140546	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6145517	6145517	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAC	51322	broad.mit.edu	37	10	28884967	28884967	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAC	51322	broad.mit.edu	37	10	28905115	28905115	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110428333	110428333	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR27	155368	broad.mit.edu	37	7	73249273	73249273	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY2	115825	broad.mit.edu	37	13	52293419	52293419	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85623505	85623505	+	Splice_Site	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167245669	167245669	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167254858	167254858	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650566	74650566	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74999731	74999731	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241904851	241904851	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR65	149465	broad.mit.edu	37	1	43664147	43664147	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190333384	190333384	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54398738	54398738	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54603241	54603241	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC3	140686	broad.mit.edu	37	20	44417687	44417687	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134225375	134225375	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137423467	137423467	+	Intron	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSB1	26118	broad.mit.edu	37	17	25621391	25621391	+	5'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32410600	32410600	+	3'UTR	DEL	C	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWTR1	25937	broad.mit.edu	37	3	149245727	149245727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106326	168106326	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17280689	17280689	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56015036	56015036	+	Translation_Start_Site	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128895082	128895082	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP3	63929	broad.mit.edu	37	22	41318433	41318433	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPOT	11260	broad.mit.edu	37	12	64828639	64828639	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPR1	9213	broad.mit.edu	37	1	180775800	180775800	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC1	7515	broad.mit.edu	37	19	44057908	44057908	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	216986777	216986777	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142094782	142094782	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17292310	17292310	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183493712	183493712	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183508600	183508600	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF5	81555	broad.mit.edu	37	5	143545014	143545014	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75266344	75266344	+	Silent	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YWHAE	7531	broad.mit.edu	37	17	1268401	1268401	+	Intron	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB48	3104	broad.mit.edu	37	1	6641242	6641242	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7C	201501	broad.mit.edu	37	18	45723217	45723218	+	Intron	DNP	CC	AA	AA			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46537855	46537855	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46549455	46549455	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46594533	46594533	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47570648	47570648	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145156752	145156752	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND2A	90637	broad.mit.edu	37	7	1192685	1192685	+	3'UTR	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38084406	38084406	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72831467	72831467	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72863674	72863674	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617728	77617728	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP2	80108	broad.mit.edu	37	5	178359027	178359027	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36	7538	broad.mit.edu	37	19	39898698	39898698	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32397493	32397493	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32404184	32404184	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68244283	68244283	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68249644	68249644	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIK1	284307	broad.mit.edu	37	19	58096344	58096344	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286238	57286238	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN2	342357	broad.mit.edu	37	16	25264188	25264188	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44800031	44800031	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMPSTE24	10269	broad.mit.edu	37	1	40737629	40737629	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND17	118490	broad.mit.edu	37	10	75184307	75184307	+	3'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF12	7559	broad.mit.edu	37	7	6732239	6732239	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53571403	53571403	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF17	7565	broad.mit.edu	37	19	57931936	57931936	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27425159	27425159	+	Silent	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44570267	44570267	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44570937	44570937	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44571372	44571372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF239	8187	broad.mit.edu	37	10	44053086	44053086	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482163	71482163	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482621	71482621	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38107609	38107609	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38121846	38121847	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF250	58500	broad.mit.edu	37	8	146112184	146112184	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22270820	22270820	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF25	219749	broad.mit.edu	37	10	38241154	38241154	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005960	37005960	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF263	10127	broad.mit.edu	37	16	3340406	3340406	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF264	9422	broad.mit.edu	37	19	57716803	57716803	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53302075	53302075	+	3'UTR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF295	49854	broad.mit.edu	37	21	43433248	43433248	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF2	7549	broad.mit.edu	37	2	95841925	95841925	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF324B	388569	broad.mit.edu	37	19	58967053	58967053	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF333	84449	broad.mit.edu	37	19	14815883	14815883	+	Silent	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25656823	25656823	+	Silent	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF350	59348	broad.mit.edu	37	19	52468573	52468573	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF350	59348	broad.mit.edu	37	19	52468935	52468935	+	Silent	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72352849	72352849	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF429	353088	broad.mit.edu	37	19	21719513	21719513	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12460637	12460637	+	Silent	SNP	G	T	T	rs147649018		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44540961	44540961	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109690339	109690339	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57200097	57200097	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22817173	22817173	+	5'UTR	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53885434	53885434	+	3'UTR	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039656	31039656	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF547	284306	broad.mit.edu	37	19	57889389	57889389	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37904467	37904467	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38283491	38283491	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53014518	53014518	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF586	54807	broad.mit.edu	37	19	58290376	58290376	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58262132	58262132	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	68428	68428	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF599	148103	broad.mit.edu	37	19	35260600	35260600	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF606	80095	broad.mit.edu	37	19	58490390	58490390	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF606	80095	broad.mit.edu	37	19	58499575	58499575	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52618107	52618107	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF626	199777	broad.mit.edu	37	19	20806810	20806810	+	3'UTR	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71625917	71625917	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF692	55657	broad.mit.edu	37	1	249149986	249149986	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF697	90874	broad.mit.edu	37	1	120179048	120179048	+	Intron	DEL	T	-	-	rs35486687		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF69	7620	broad.mit.edu	37	19	12015468	12015468	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF701	55762	broad.mit.edu	37	19	53079292	53079292	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF704	619279	broad.mit.edu	37	8	81709418	81709418	+	Intron	SNP	T	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF70	7621	broad.mit.edu	37	22	24087219	24087219	+	Nonsense_Mutation	SNP	G	A	A	rs145985311		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522339	57522339	+	Intron	SNP	C	A	A	rs113429084		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF71	58491	broad.mit.edu	37	19	57133485	57133485	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63667659	63667660	+	Intron	DNP	GT	AC	AC			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53958156	53958156	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40581097	40581097	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38160602	38160602	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88964538	88964538	+	Missense_Mutation	SNP	C	A	A	rs115159731	byFrequency;by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF830	91603	broad.mit.edu	37	17	33288891	33288891	+	Silent	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57828923	57828923	+	Intron	DEL	A	-	-	rs68185615		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829709	57829709	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53844516	53844516	+	5'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	206432	206432	+	RNA	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	101850234	101850234	+	Intron	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102189268	102189268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102196379	102196379	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB2	9406	broad.mit.edu	37	1	71542449	71542449	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58556386	58556386	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58556725	58556725	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58564016	58564016	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56832241	56832241	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30937209	30937209	+	RNA	SNP	C	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	26303113	26303113	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40914356	40914357	+	5'Flank	INS	-	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22294256	22294256	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22322806	22322806	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22372853	22372853	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22466152	22466152	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22999226	22999226	+	Intron	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38296593	38296593	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193238	20193238	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28513193	28513193	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34979838	34979838	+	5'Flank	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74247488	74247488	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37199526	37199526	+	RNA	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37264510	37264510	+	3'UTR	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39564274	39564274	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70078417	70078417	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61819508	61819508	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	129285	129285	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143151750	143151750	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148891729	148891729	+	RNA	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157895100	157895100	+	5'Flank	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	58889543	58889543	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	11242521	11242521	+	5'Flank	SNP	A	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14528247	14528247	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186604098	186604098	+	5'Flank	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6910015	6910015	+	Intron	DEL	G	-	-			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8418233	8418233	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89339971	89339971	+	RNA	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89384811	89384811	+	RNA	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89924052	89924053	+	Intron	INS	-	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044468	90044468	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90188883	90188883	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249238	90249238	+	RNA	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113951058	113951058	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174374763	174374763	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491566	180491566	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195435490	195435490	+	RNA	SNP	G	A	A	rs140823958	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67714017	67714017	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14661273	14661273	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152223990	152223990	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34190875	34190875	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	70526800	70526800	+	Intron	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7304361	7304361	+	RNA	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8410958	8410958	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126965320	126965320	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91058360	91058360	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142131253	142131253	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38385347	38385347	+	Intron	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39873974	39873974	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57698028	57698028	+	5'Flank	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12424776	12424776	+	Intron	SNP	G	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12452170	12452170	+	Intron	SNP	T	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12493603	12493603	+	Intron	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65291686	65291686	+	Intron	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	75733769	75733769	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	108878422	108878422	+	Intron	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456868	66456868	+	Intron	SNP	G	C	C	rs1845064	by1000genomes	TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68412478	68412478	+	RNA	SNP	A	G	G	rs78767880		TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68413639	68413639	+	RNA	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84677069	84677069	+	5'Flank	SNP	C	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	12101	12101	+	RNA	SNP	T	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	4829	4829	+	5'Flank	SNP	A	G	G			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17128607	17128607	+	Intron	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
