Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52566490	52566490	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A1CF	29974	broad.mit.edu	37	10	52566514	52566514	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9010022	9010022	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67149586	67149589	+	Intron	DEL	AGGG	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67111736	67111736	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87174182	87174182	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698371	20698371	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20721220	20721220	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100498938	100498938	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116449827	116449827	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35537982	35537982	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132338449	132338449	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31355551	31355551	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS2	55902	broad.mit.edu	37	20	33501331	33501332	+	Intron	INS	-	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6A	86	broad.mit.edu	37	3	179292326	179292326	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR2	10097	broad.mit.edu	37	2	65492395	65492395	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39694772	39694772	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106579205	106579205	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106641797	106641797	+	RNA	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106934477	106934477	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106963128	106963128	+	RNA	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107121992	107121992	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100591631	100591631	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43822330	43822330	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64606723	64606723	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150532070	150532070	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25051072	25051072	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25065111	25065111	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOQ	9370	broad.mit.edu	37	3	186571979	186571979	+	Missense_Mutation	SNP	T	C	C	rs138835949		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150825706	150825706	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27874733	27874734	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62289498	62289498	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	314505	314505	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17382562	17382562	+	Silent	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186330903	186330903	+	Translation_Start_Site	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86118220	86118220	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A3	220	broad.mit.edu	37	15	101432911	101432911	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG8	79053	broad.mit.edu	37	11	77838394	77838394	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43919175	43919175	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMTN	401138	broad.mit.edu	37	4	71389486	71389486	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC5	51433	broad.mit.edu	37	12	121790157	121790158	+	5'UTR	INS	-	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27322273	27322273	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37438566	37438566	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100169438	100169438	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99188695	99188695	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26619999	26619999	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39441230	39441230	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116701383	116701383	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35189673	35189673	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47196580	47196583	+	Frame_Shift_Del	DEL	TGAA	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP3	26286	broad.mit.edu	37	22	43213182	43213182	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	143913137	143913137	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142152228	142152228	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43473060	43473060	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43481113	43481113	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP27	201176	broad.mit.edu	37	17	43483098	43483098	+	5'UTR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP4	393	broad.mit.edu	37	X	153184186	153184186	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46244727	46244727	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23244703	23244703	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AS3MT	57412	broad.mit.edu	37	10	104650502	104650502	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	51974721	51974721	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94401096	94401096	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1746857	1746857	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASRGL1	80150	broad.mit.edu	37	11	62105605	62105605	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4C	84938	broad.mit.edu	37	1	63299657	63299657	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG7	10533	broad.mit.edu	37	3	11421660	11421660	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182616476	182616476	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193151776	193151776	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193166055	193166055	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193220354	193220354	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193029558	193029558	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124239218	124239218	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77266610	77266610	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42553162	42553162	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZU1	566	broad.mit.edu	37	19	828291	828291	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29205841	29205841	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171511055	171511055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS7	55212	broad.mit.edu	37	4	122756398	122756398	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND3	57673	broad.mit.edu	37	6	107390755	107390755	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHE41	79365	broad.mit.edu	37	12	26276834	26276834	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79747157	79747157	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13578381	13578381	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13604519	13604519	+	Silent	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31608424	31608424	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65822348	65822348	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65928065	65928065	+	Silent	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140477778	140477778	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32913437	32913437	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50362548	50362548	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137480931	137480931	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF2	55290	broad.mit.edu	37	8	37707163	37707163	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A2	10385	broad.mit.edu	37	6	26390120	26390121	+	Intron	DNP	GG	TT	TT			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf107	219621	broad.mit.edu	37	10	63445975	63445975	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf120	399814	broad.mit.edu	37	10	124457744	124457744	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf2	56652	broad.mit.edu	37	10	102749166	102749166	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118424327	118424327	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76250572	76250572	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf48	79081	broad.mit.edu	37	11	62437203	62437203	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf54	28970	broad.mit.edu	37	11	93493071	93493071	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf80	79703	broad.mit.edu	37	11	66529037	66529037	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf80	79703	broad.mit.edu	37	11	66529307	66529307	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf87	399947	broad.mit.edu	37	11	109294448	109294448	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf138	79609	broad.mit.edu	37	14	50582933	50582933	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf29	79768	broad.mit.edu	37	15	34455870	34455870	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645123	13645123	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf21	83608	broad.mit.edu	37	18	33557477	33557477	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30926045	30926045	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf124	83932	broad.mit.edu	37	1	231483582	231483582	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75108782	75108782	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf192	257177	broad.mit.edu	37	1	161337657	161337657	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34667948	34667948	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf13	83606	broad.mit.edu	37	22	24942941	24942941	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD2L	9854	broad.mit.edu	37	11	118980898	118980898	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf18	54978	broad.mit.edu	37	2	26999280	26999280	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf70	339778	broad.mit.edu	37	2	26802085	26802085	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6702629	6702629	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192516720	192516720	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58728278	58728278	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPB	725	broad.mit.edu	37	1	207273064	207273064	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf28	64417	broad.mit.edu	37	5	43454051	43454051	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf43	55262	broad.mit.edu	37	7	99755238	99755238	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89900752	89900752	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf125	84302	broad.mit.edu	37	9	104238916	104238916	+	Silent	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65142540	65142540	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181701772	181701772	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24373255	24373256	+	3'UTR	DNP	GC	CA	CA			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115101985	115101985	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062749	86062749	+	Intron	SNP	G	A	A	rs111547629		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15096643	15096643	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALU	813	broad.mit.edu	37	7	128399895	128399895	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149602821	149602821	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76823721	76823721	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPZA2	830	broad.mit.edu	37	7	116550252	116550252	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96062591	96062591	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38850164	38850164	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119155518	119155518	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66678271	66678271	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219885896	219885896	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179737000	179737000	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74710343	74710343	+	5'UTR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32635665	32635665	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32705159	32705159	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112349238	112349238	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118706863	118706863	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL13	6357	broad.mit.edu	37	17	32685069	32685069	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL7	6354	broad.mit.edu	37	17	32598107	32598107	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7527343	7527343	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43859711	43859711	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72539161	72539161	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72521761	72521762	+	Intron	DEL	TC	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72521802	72521802	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80290638	80290638	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD59	966	broad.mit.edu	37	11	33743839	33743839	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54415868	54415868	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65032487	65032487	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21854705	21854705	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25568654	25568654	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85965669	85965669	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971145	21971145	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	17978517	17978517	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104061195	104061195	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13099677	13099677	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP68	23177	broad.mit.edu	37	2	65309887	65309887	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196694299	196694299	+	Missense_Mutation	SNP	G	A	A	rs138890387		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1A	10036	broad.mit.edu	37	19	4418042	4418042	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93543719	93543719	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192825	203192825	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671206	45671206	+	3'UTR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIAPIN1	57019	broad.mit.edu	37	16	57465060	57465060	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143017687	143017687	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLC	1178	broad.mit.edu	37	19	40228700	40228700	+	5'Flank	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN16	10686	broad.mit.edu	37	3	190106128	190106128	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC11A	6320	broad.mit.edu	37	19	51226762	51226762	+	5'UTR	DEL	G	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC17A	388512	broad.mit.edu	37	19	14720827	14720827	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79031334	79031334	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNR1	1268	broad.mit.edu	37	6	88854043	88854043	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99827588	99827588	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165551528	165551528	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46104708	46104708	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23456276	23456276	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103468274	103468274	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71655370	71655370	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749626	101749626	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55925682	55925682	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139636060	139636060	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139662035	139662035	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116918422	116918422	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130095440	130095440	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189862422	189862422	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227983334	227983341	+	Intron	DEL	TGTTAAGA	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189906410	189906410	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120942801	120942801	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7A2	1347	broad.mit.edu	37	6	75949987	75949987	+	Intron	DEL	A	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148545910	148545910	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166418655	166418655	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68529216	68529216	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3781081	3781081	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36668829	36668829	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75932259	75932259	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153924925	153924925	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27026420	27026420	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSH2	1443	broad.mit.edu	37	17	61950941	61950941	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113702072	113702072	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18142440	18142440	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTH	1491	broad.mit.edu	37	1	70895436	70895436	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC1	404093	broad.mit.edu	37	17	55950998	55950998	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225376227	225376227	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf41	139212	broad.mit.edu	37	X	106459969	106459969	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22928529	22928530	+	Intron	INS	-	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A6	1548	broad.mit.edu	37	19	41356335	41356335	+	5'UTR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99313707	99313707	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59404174	59404174	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39388916	39388916	+	Silent	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175967	159175967	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARS2	55157	broad.mit.edu	37	1	173799891	173799891	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104445040	104445040	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50451589	50451589	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155249394	155249394	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74590293	74590293	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38091901	38091901	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT3	1649	broad.mit.edu	37	12	57910625	57910625	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118572407	118572407	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118582056	118582056	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX1	1653	broad.mit.edu	37	2	15735280	15735280	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX31	64794	broad.mit.edu	37	9	135521367	135521367	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74116036	74116036	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX51	317781	broad.mit.edu	37	12	132626019	132626019	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1C	79958	broad.mit.edu	37	19	6467742	6467742	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66015139	66015139	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59894899	59894899	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56335227	56335227	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14217603	14217603	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42788619	42788619	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182825599	182825599	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96048545	96048545	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61513176	61513176	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51126161	51126161	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12957380	12957380	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69669515	69669515	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32407901	32407901	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32867997	32867997	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTC2	63946	broad.mit.edu	37	19	42352736	42352737	+	Intron	DNP	GG	TT	TT			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMTF1	9988	broad.mit.edu	37	7	86800322	86800322	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13692315	13692315	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196851755	196851755	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38862647	38862647	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11671874	11671874	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC15	29103	broad.mit.edu	37	13	43660049	43660049	+	Intron	SNP	A	G	G	rs75881215		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM2	1785	broad.mit.edu	37	19	10883351	10883351	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94342587	94342587	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98077982	98077982	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129209050	129209050	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169463408	169463408	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPM2	8818	broad.mit.edu	37	9	130699749	130699749	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74746519	74746519	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9783935	9783935	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX1	53905	broad.mit.edu	37	15	45426448	45426448	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167083021	167083021	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158139124	158139124	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBNA1BP2	10969	broad.mit.edu	37	1	43634544	43634544	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2	1894	broad.mit.edu	37	3	172501634	172501634	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93206841	93206841	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28419823	28419823	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19959661	19959661	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38451300	38451300	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63091846	63091846	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63215246	63215246	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141566197	141566197	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120809908	120809908	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117658878	117658878	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21191193	21191193	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC2	60528	broad.mit.edu	37	17	12905673	12905673	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23764862	23764862	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD3	84173	broad.mit.edu	37	2	85595895	85595895	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL2	54898	broad.mit.edu	37	6	10989798	10989798	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79403427	79403427	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129801717	129801717	+	Splice_Site	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120608147	120608147	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTHD1	150350	broad.mit.edu	37	22	40232109	40232109	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38185541	38185541	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89448578	89448578	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2IP	55914	broad.mit.edu	37	5	65346683	65346683	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56026386	56026386	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC3	51614	broad.mit.edu	37	20	34145283	34145283	+	3'UTR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI2	112479	broad.mit.edu	37	16	20791949	20791949	+	3'UTR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23713313	23713314	+	Intron	INS	-	AAA	AAA	rs147321051	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESAM	90952	broad.mit.edu	37	11	124628319	124628319	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138188158	138188158	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44151737	44151737	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH	2166	broad.mit.edu	37	1	46876644	46876644	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61624444	61624444	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM117A	81558	broad.mit.edu	37	17	47788932	47788932	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM117B	150864	broad.mit.edu	37	2	203630379	203630379	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170657264	170657264	+	Silent	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184868578	184868578	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91230572	91230572	+	Silent	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91389423	91389423	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159048496	159048496	+	3'UTR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM63B	54629	broad.mit.edu	37	15	59064338	59064338	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71F1	84691	broad.mit.edu	37	7	128370179	128370179	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM72A	729533	broad.mit.edu	37	1	206141297	206141297	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89858345	89858345	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187527386	187527386	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187539602	187539602	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92564777	92564777	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92571014	92571014	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126373592	126373592	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48703113	48703113	+	3'UTR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48756110	48756110	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127697637	127697637	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL17	64839	broad.mit.edu	37	5	107216863	107216863	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER2	2208	broad.mit.edu	37	19	7755301	7755301	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40406007	40406007	+	Silent	SNP	C	A	A	rs145297830	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	60133106	60133106	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282538	152282538	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28896409	28896409	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28903844	28903844	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171174557	171174557	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP4	23360	broad.mit.edu	37	11	47767698	47767698	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172062044	172062044	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ2	55810	broad.mit.edu	37	12	8201170	8201170	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL2	668	broad.mit.edu	37	3	138665213	138665213	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272445	52272445	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79391111	79391111	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190745	49190745	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49244706	49244706	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39169813	39169813	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27184268	27184268	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS6	2621	broad.mit.edu	37	13	114542875	114542875	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCDH	2639	broad.mit.edu	37	19	13005651	13005651	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT4	51301	broad.mit.edu	37	5	74325216	74325216	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN8	54960	broad.mit.edu	37	X	14038431	14038431	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEN1	348654	broad.mit.edu	37	2	17962451	17962451	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158363929	158363929	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179743458	179743458	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117885020	117885020	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38877429	38877429	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61996054	61996054	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42467379	42467379	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59604642	59604642	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150210748	150210748	+	5'Flank	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6644757	6644757	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS3	169792	broad.mit.edu	37	9	3829339	3829339	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14748225	14748226	+	Intron	DNP	CC	AA	AA			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT8D2	83468	broad.mit.edu	37	12	104387344	104387344	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4862032	4862032	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518747	93518747	+	3'UTR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22425797	22425797	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR139	124274	broad.mit.edu	37	16	20043222	20043222	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR68	8111	broad.mit.edu	37	14	91700939	91700939	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPT2	84706	broad.mit.edu	37	16	46956129	46956129	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28499817	28499817	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX6	257202	broad.mit.edu	37	6	28473416	28473416	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87482852	87482852	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48907937	48907937	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48854568	48854571	+	Frame_Shift_Del	DEL	GAGC	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33533875	33533875	+	Silent	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARBI1	283254	broad.mit.edu	37	11	46624893	46624893	+	3'UTR	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114277315	114277315	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240066313	240066313	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197183252	197183252	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197183930	197183930	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84369980	84369980	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28366458	28366458	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28375358	28375358	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123116	100123118	+	Intron	DEL	AAG	-	-	rs35577018		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100135225	100135225	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12122360	12122360	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176311026	176311026	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL2	221092	broad.mit.edu	37	11	62489215	62489215	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL2	221092	broad.mit.edu	37	11	62489887	62489887	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL2	221092	broad.mit.edu	37	11	62490394	62490394	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER3	9454	broad.mit.edu	37	19	19042289	19042289	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC6	3223	broad.mit.edu	37	12	54423644	54423644	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD3	3232	broad.mit.edu	37	2	177034473	177034473	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD8	3234	broad.mit.edu	37	2	176995386	176995386	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26862054	26862054	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114378979	114378979	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97484854	97484854	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97485409	97485409	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122929250	122929250	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22191810	22191810	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183824454	183824454	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA1	5654	broad.mit.edu	37	10	124273506	124273506	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53578370	53578370	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71025871	71025871	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95014219	95014219	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI6	2537	broad.mit.edu	37	1	27994970	27994970	+	Silent	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163123986	163123986	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133795691	133795691	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133799692	133799692	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12B	3593	broad.mit.edu	37	5	158750382	158750382	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734578	39734578	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154420690	154420690	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155234896	155234896	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155235949	155235949	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166888575	166888576	+	3'UTR	DNP	GA	TG	TG			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99156082	99156082	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL4	3641	broad.mit.edu	37	9	5233852	5233852	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75858224	75858224	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75896503	75896503	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223366	44223366	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2747724	2747724	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR	3671	broad.mit.edu	37	15	74468360	74468360	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145533744	145533744	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42463098	42463098	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA7	3679	broad.mit.edu	37	12	56082520	56082521	+	Intron	INS	-	G	G	rs57885211		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33635559	33635560	+	Intron	INS	-	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24475348	24475348	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6062058	6062058	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM3	83700	broad.mit.edu	37	11	134015694	134015694	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170338718	170338718	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170371213	170371213	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	155838622	155838622	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21919520	21919520	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215256647	215256647	+	5'UTR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78649473	78649473	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNRG	283518	broad.mit.edu	37	13	50589843	50589843	+	Silent	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196288467	196288467	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55948765	55948765	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55953884	55953884	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55976528	55976528	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0020	9933	broad.mit.edu	37	9	2804411	2804412	+	In_Frame_Ins	INS	-	TAGTGC	TAGTGC			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26942342	26942342	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26955622	26955622	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73481551	73481551	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126096091	126096091	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197401799	197401799	+	3'UTR	DEL	G	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42273037	42273037	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55357478	55357478	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55368344	55368344	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1009	22832	broad.mit.edu	37	6	84913699	84913699	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118250649	118250649	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86527007	86527007	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5772996	5772996	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1586	57691	broad.mit.edu	37	6	56918096	56918096	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113373722	113373722	+	3'UTR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16336963	16336963	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18A	81930	broad.mit.edu	37	11	28090868	28090868	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4926854	4926854	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91498223	91498223	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200977926	200977926	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901579	51901579	+	Silent	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39328278	39328278	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55044921	55044921	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK12	43849	broad.mit.edu	37	19	51535285	51535285	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53185272	53185272	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978001	45978001	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54867011	54867011	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7023210	7023210	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7044832	7044832	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7050560	7050560	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112535120	112535120	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112535187	112535187	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183072671	183072671	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP1	3916	broad.mit.edu	37	13	113976821	113976821	+	3'UTR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS2	23395	broad.mit.edu	37	3	45565506	45565506	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16692159	16692159	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40198008	40198008	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95552889	95552889	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG4	3981	broad.mit.edu	37	13	108860946	108860946	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPJ	142910	broad.mit.edu	37	10	90354547	90354547	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36114686	36114686	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36116825	36116825	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX2	222484	broad.mit.edu	37	13	28122551	28122551	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713523	55713523	+	RNA	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50368229	50368229	+	5'Flank	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298378	22298378	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728855	728855	broad.mit.edu	37	1	149648094	149648094	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11908141	11908141	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99358709	99358709	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59271635	59271635	+	Splice_Site	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267620	141267620	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12353440	12353440	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC34	151827	broad.mit.edu	37	3	169511466	169511466	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC52	440699	broad.mit.edu	37	1	165532800	165532800	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70501974	70501975	+	Intron	DNP	CC	AG	AG			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40713922	40713922	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40717176	40717176	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529897	80529897	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSG1	55341	broad.mit.edu	37	3	194380842	194380842	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTA	4049	broad.mit.edu	37	6	31540595	31540595	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAB21L1	4081	broad.mit.edu	37	13	36049557	36049557	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20198442	20198442	+	Silent	SNP	G	A	A	rs149661432	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD1	28992	broad.mit.edu	37	11	63767231	63767231	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD1	28992	broad.mit.edu	37	11	63919947	63919947	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE2	139599	broad.mit.edu	37	X	75004229	75004229	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77708193	77708193	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77754906	77754906	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114092316	114092316	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210557249	210557249	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161519344	161519344	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K8	1326	broad.mit.edu	37	10	30748380	30748380	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK6	5597	broad.mit.edu	37	15	52350895	52350895	+	Missense_Mutation	SNP	C	A	A	rs1049605		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP2	23542	broad.mit.edu	37	22	51043818	51043818	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44060805	44060805	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63670486	63670486	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK3	4140	broad.mit.edu	37	14	103871486	103871486	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3835383	3835383	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149226685	149226685	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54527763	54527763	+	3'UTR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS2	51360	broad.mit.edu	37	X	21887591	21887591	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182812357	182812357	+	Silent	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	95022190	95022190	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	84117633	84117633	+	Intron	SNP	A	C	C	rs148168195	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48466751	48466752	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168833862	168833862	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MESDC2	23184	broad.mit.edu	37	15	81271612	81271612	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2A	339175	broad.mit.edu	37	17	60504013	60504013	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2B	55798	broad.mit.edu	37	7	128119565	128119565	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116339633	116339633	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755366	141755366	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4B	11282	broad.mit.edu	37	5	179227083	179227083	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGP	4256	broad.mit.edu	37	12	15035930	15035930	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109775325	109775325	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129902204	129902205	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL1	57591	broad.mit.edu	37	22	40825747	40825747	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	28024265	28024265	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49438022	49438022	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36863738	36863738	+	Splice_Site	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNAT1	4331	broad.mit.edu	37	14	61263209	61263209	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537309	174537309	+	Silent	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71360522	71360522	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPV17	4358	broad.mit.edu	37	2	27535576	27535576	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077037	19077037	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL53	116540	broad.mit.edu	37	2	74699368	74699368	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31729099	31729099	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL1	339287	broad.mit.edu	37	17	38285736	38285736	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121469061	121469061	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151293234	151293234	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFS	10588	broad.mit.edu	37	15	80181807	80181808	+	Intron	INS	-	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30630650	30630650	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7875227	7875227	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17601265	17601265	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9073567	9073567	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100696586	100696586	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77836126	77836126	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48443287	48443287	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408060	10408060	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10362640	10362640	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303934	10303934	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36689587	36689587	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16699618	16699618	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52611478	52611478	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76567043	76567043	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95072853	95072853	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST1	84148	broad.mit.edu	37	16	31138310	31138310	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101755760	101755760	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101760201	101760201	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19905880	19905880	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78415495	78415495	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15358803	15358803	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204055776	204055779	+	Intron	DEL	AGAA	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891137	16891137	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85578607	85578607	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183791508	183791508	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133540011	133540011	+	Missense_Mutation	SNP	G	T	T	rs112873686		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23931653	23931653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75566094	75566094	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119115383	119115383	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152553859	152553859	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72076539	72076539	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156640464	156640464	+	Missense_Mutation	SNP	C	A	A	rs140202258		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU2	4759	broad.mit.edu	37	2	233897369	233897370	+	5'Flank	INS	-	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL1B	54492	broad.mit.edu	37	5	172083624	172083624	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148231	22148231	+	5'Flank	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13186483	13186483	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129740166	129740166	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3606914	3606914	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56423720	56423720	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55438892	55438892	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56244069	56244069	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP9	338321	broad.mit.edu	37	19	56244582	56244582	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NME7	29922	broad.mit.edu	37	1	169272408	169272408	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOBOX	135935	broad.mit.edu	37	7	144101641	144101641	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50745444	50745444	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156746815	156746815	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156752882	156752882	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117768312	117768312	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS2	4862	broad.mit.edu	37	2	101584684	101584684	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108059914	108059914	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153655927	153655927	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34790057	34790057	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200080375	200080375	+	Silent	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6609860	6609860	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132177677	132177677	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT9	53343	broad.mit.edu	37	4	88344162	88344162	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153968130	153968130	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73229201	73229201	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102331119	102331119	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXT1	29107	broad.mit.edu	37	20	23335017	23335017	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228402505	228402505	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220420766	220420766	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133041296	133041296	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161968140	161968140	+	Splice_Site	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OOEP	441161	broad.mit.edu	37	6	74078997	74078997	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54147395	54147395	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54147497	54147497	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576655	158576655	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512967	248512967	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695360	247695360	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637569	248637569	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525484	248525484	+	Missense_Mutation	SNP	G	T	T	rs151201153	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59244952	59244952	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55419180	55419180	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5775947	5775947	+	5'UTR	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AK2	390181	broad.mit.edu	37	11	56756334	56756334	+	5'Flank	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563770	55563770	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761919	55761919	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703185	55703185	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703938	55703938	+	5'Flank	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123814447	123814447	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624576	123624576	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777198	123777198	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128652	56128652	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC6L	23594	broad.mit.edu	37	16	46729493	46729493	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL11	114885	broad.mit.edu	37	3	125313607	125313607	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	74013232	74013232	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HB	5034	broad.mit.edu	37	17	79804359	79804359	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRGL	133015	broad.mit.edu	37	4	20715231	20715231	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRGL	133015	broad.mit.edu	37	4	20715241	20715241	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103271215	103271215	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77043672	77043672	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34606279	34606279	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP2	10038	broad.mit.edu	37	14	20813691	20813691	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50117294	50117294	+	Intron	SNP	A	G	G	rs140383747	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31823248	31823248	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55996471	55996471	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56106178	56106178	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67800888	67800889	+	Missense_Mutation	DNP	AC	CA	CA			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67801921	67801944	+	In_Frame_Del	DEL	AGGTATCTTTCTGTTCTCTATCCA	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140230315	140230316	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140572961	140572961	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140626753	140626753	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140724478	140724479	+	Missense_Mutation	DNP	AT	TA	TA			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140734986	140734986	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774000	140774000	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140783387	140783387	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140769598	140769598	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDP1	200373	broad.mit.edu	37	2	120397378	120397378	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF2	7703	broad.mit.edu	37	17	36896596	36896596	+	Silent	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1B	9468	broad.mit.edu	37	X	24665111	24665111	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31890312	31890312	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58571045	58571045	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE5A	8654	broad.mit.edu	37	4	120474861	120474861	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDYN	5173	broad.mit.edu	37	20	1961025	1961025	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41582248	41582248	+	5'Flank	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48587554	48587554	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHIP	55023	broad.mit.edu	37	6	79697862	79697862	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47682267	47682267	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47695785	47695785	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D2	120379	broad.mit.edu	37	11	111938705	111938705	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204408022	204408023	+	Intron	DEL	CA	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIN4	5303	broad.mit.edu	37	X	71401525	71401525	+	5'Flank	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22168593	22168593	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110432765	110432765	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125301229	125301229	+	Nonsense_Mutation	SNP	G	T	T	rs71474144		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA1A	51365	broad.mit.edu	37	3	119337141	119337141	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302338	42302338	+	Frame_Shift_Del	DEL	A	-	-	rs28736629		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6533066	6533066	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLGLA	285189	broad.mit.edu	37	2	107002933	107002933	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208218447	208218447	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94620960	94620960	+	Silent	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72164000	72164000	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72174463	72174463	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160222124	160222124	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD2	5425	broad.mit.edu	37	7	44157666	44157666	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75552589	75552589	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14523524	14523524	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42599637	42599637	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F3	5455	broad.mit.edu	37	2	105472929	105472929	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F3	5455	broad.mit.edu	37	2	105473259	105473259	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147560228	147560228	+	5'UTR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56990031	56990031	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170460729	170460729	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13B	23368	broad.mit.edu	37	14	104205426	104205426	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	145969332	145969332	+	3'UTR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12856217	12856217	+	3'UTR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68934323	68934323	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69046289	69046289	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54394900	54394900	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT7	54496	broad.mit.edu	37	16	68379639	68379639	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95954337	95954337	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPSAP1	5635	broad.mit.edu	37	17	74308953	74308953	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRTG	283659	broad.mit.edu	37	15	55970089	55970089	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97278224	97278224	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141828246	141828246	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198666124	198666124	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8341934	8341934	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748016	8748016	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61989164	61989164	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128399844	128399844	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42966082	42966083	+	Intron	INS	-	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB21	23011	broad.mit.edu	37	12	72175918	72175918	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB2A	5862	broad.mit.edu	37	8	61484555	61484555	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174200661	174200661	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGEF1	27342	broad.mit.edu	37	7	66270236	66270236	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36142052	36142052	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37175215	37175215	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85800038	85800038	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP2C	57826	broad.mit.edu	37	X	131351092	131351092	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160265100	160265100	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173782451	173782451	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPH1	65059	broad.mit.edu	37	2	204312595	204312595	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48893942	48893942	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49039368	49039369	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24580361	24580362	+	Frame_Shift_Del	DEL	CG	-	-	rs146591085	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM7	10179	broad.mit.edu	37	11	114271505	114271505	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM9	23543	broad.mit.edu	37	22	36177604	36177604	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49073966	49073966	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103207175	103207175	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103234728	103234728	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204125889	204125889	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18234050	18234050	+	3'UTR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74658016	74658016	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGNEF	64283	broad.mit.edu	37	5	73090311	73090311	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86008569	86008569	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS17	26575	broad.mit.edu	37	6	153344676	153344676	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72818969	72818969	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK3	11035	broad.mit.edu	37	14	24805446	24805446	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE3	6037	broad.mit.edu	37	14	21359668	21359668	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF10	9921	broad.mit.edu	37	12	120984337	120984337	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124763562	124763562	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124764190	124764190	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP3	79657	broad.mit.edu	37	12	48080704	48080704	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120689	47120689	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150444486	150444486	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150445065	150445065	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213349822	213349822	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSA	3921	broad.mit.edu	37	3	39449255	39449255	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77378100	77378100	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11931800	11931800	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTKN	6242	broad.mit.edu	37	2	74657732	74657732	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33831598	33831598	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33938730	33938730	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134986565	134986565	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75310742	75310742	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246929456	246929456	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38764740	38764740	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38766609	38766609	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166223931	166223931	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165971983	165971983	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167094772	167094772	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100708474	100708474	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC1	6382	broad.mit.edu	37	2	20402600	20402600	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC1	6382	broad.mit.edu	37	2	20402913	20402913	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4167177	4167206	+	Intron	DEL	AAATGGGAGCATGTGCTATTCCCCCAAAGC	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24A	10802	broad.mit.edu	37	5	134022559	134022559	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83796830	83796830	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102250124	102250124	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108215098	108215098	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT10	151011	broad.mit.edu	37	2	110342589	110342589	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT2	4735	broad.mit.edu	37	2	242275334	242275334	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETDB1	9869	broad.mit.edu	37	1	150934369	150934370	+	Intron	INS	-	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS12	140890	broad.mit.edu	37	5	65473538	65473538	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23808791	23808791	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72619271	72619271	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25280126	25280126	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM3	27352	broad.mit.edu	37	22	40804797	40804797	+	Splice_Site	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51218990	51218990	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT1	6470	broad.mit.edu	37	17	18256838	18256838	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC14	100049587	broad.mit.edu	37	19	52146496	52146496	+	3'UTR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC15	284266	broad.mit.edu	37	18	43418689	43418689	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52132708	52132708	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232539776	232539776	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232629163	232629163	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164733773	164733773	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164780228	164780228	+	Frame_Shift_Del	DEL	G	-	-	rs144637860		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164793793	164793793	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48500035	48500035	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48500163	48500163	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664478	44664478	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63058004	63058004	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116534856	116534856	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110778227	110778227	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A1	9187	broad.mit.edu	37	15	65944162	65944162	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95849237	95849237	+	Intron	DEL	A	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A30	253512	broad.mit.edu	37	13	45978310	45978310	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A32	81034	broad.mit.edu	37	8	104414117	104414117	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86894927	86894927	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234041493	234041493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A7	55238	broad.mit.edu	37	16	58710108	58710109	+	Intron	DNP	CC	TG	TG			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190430060	190430060	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC46A2	57864	broad.mit.edu	37	9	115652023	115652023	+	Silent	SNP	G	A	A	rs139403102		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162820795	162820795	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	318891	318891	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110716431	110716431	+	Intron	SNP	G	A	A	rs146032103	by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20668618	20668618	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A8	23428	broad.mit.edu	37	14	23598916	23598916	+	Silent	SNP	C	A	A	rs35143650		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402265	40402265	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	485292	485292	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21392104	21392104	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98807614	98807614	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20526711	20526711	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164906589	164906589	+	Missense_Mutation	SNP	T	A	A	rs149449605		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164908111	164908111	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45748426	45748426	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-13	100033450	broad.mit.edu	37	15	25436751	25436751	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1168845	1168845	+	Silent	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX11	29916	broad.mit.edu	37	17	46189574	46189574	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX15	29907	broad.mit.edu	37	11	64799559	64799559	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121441018	121441018	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231050639	231050639	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795247	142795247	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA2	9825	broad.mit.edu	37	20	48522147	48522147	+	3'UTR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55655764	55655764	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158581118	158581118	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158587387	158587387	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41029413	41029413	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45812906	45812906	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30749653	30749655	+	In_Frame_Del	DEL	GCG	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRI	6717	broad.mit.edu	37	7	87846386	87846386	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35484041	35484041	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48214053	48214053	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD3	10948	broad.mit.edu	37	17	37809961	37809961	+	Silent	SNP	C	T	T	rs150342077	byFrequency	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47735496	47735496	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML3	161003	broad.mit.edu	37	13	39542500	39542500	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131283117	131283117	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53150576	53150576	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67941312	67941312	+	Silent	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29820203	29820203	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152464792	152464792	+	Missense_Mutation	SNP	G	A	A	rs147814237		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152673179	152673179	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910078	132910078	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120801062	120801062	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60583997	60583997	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK1	57551	broad.mit.edu	37	17	27802714	27802714	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPT1	202018	broad.mit.edu	37	4	16164961	16164961	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D26	353149	broad.mit.edu	37	17	15643250	15643250	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101646186	101646186	+	Silent	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67401814	67401814	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20850472	20850472	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104464212	104464212	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50803742	50803742	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93519512	93519512	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2375102	2375102	+	Silent	SNP	C	A	A	rs139796716	byFrequency;by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TH1L	51497	broad.mit.edu	37	20	57565000	57565000	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP2	83591	broad.mit.edu	37	12	72058219	72058219	+	5'UTR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP9	79725	broad.mit.edu	37	4	83839864	83839864	+	Silent	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134122	128134122	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRB	7068	broad.mit.edu	37	3	24188166	24188166	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD2	80745	broad.mit.edu	37	2	39964054	39964054	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43766752	43766752	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJAP1	93643	broad.mit.edu	37	6	43472676	43472676	+	Missense_Mutation	SNP	G	T	T	rs151036953		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63055813	63055813	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38777871	38777871	+	5'UTR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF3	56889	broad.mit.edu	37	10	98307731	98307731	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF3	56889	broad.mit.edu	37	10	98310989	98310989	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2597915	2597915	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114157899	114157899	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED5	50999	broad.mit.edu	37	1	93645475	93645475	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106C	79022	broad.mit.edu	37	12	48360468	48360468	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44121558	44121558	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29924396	29924396	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42509968	42509968	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM98	26022	broad.mit.edu	37	17	31267870	31267870	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX1	81542	broad.mit.edu	37	14	51712139	51712139	+	Intron	SNP	G	T	T	rs5018274		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117791725	117791725	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117840266	117840266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10D	8793	broad.mit.edu	37	8	23003366	23003366	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170784276	170784276	+	Intron	DEL	G	-	-	rs113144713		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57068279	57068279	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355258	175355258	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32018016	32018016	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32039851	32039851	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L1	10040	broad.mit.edu	37	17	52981101	52981101	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53TG5	27296	broad.mit.edu	37	20	44006141	44006141	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAM1	23471	broad.mit.edu	37	8	71520475	71520475	+	5'UTR	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123539799	123539799	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110100053	110100053	+	Silent	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	114945573	114945573	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP10	9322	broad.mit.edu	37	19	6751307	6751307	+	3'UTR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72969945	72969945	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV2	51393	broad.mit.edu	37	17	16336868	16336868	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSR1	55720	broad.mit.edu	37	17	2234038	2234038	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180324017	180324017	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166775973	166775973	+	Intron	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20767521	20767521	+	Silent	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89336658	89336658	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590872	179590872	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179602709	179602709	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP3	7289	broad.mit.edu	37	12	3042500	3042500	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP4	56995	broad.mit.edu	37	6	158902136	158902136	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15508095	15508095	+	Intron	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162535800	162535800	+	Splice_Site	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBD	10537	broad.mit.edu	37	6	29523863	29523863	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2G2	7327	broad.mit.edu	37	21	46197310	46197310	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118235726	118235726	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138969127	138969127	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43313527	43313527	+	Silent	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN7	26043	broad.mit.edu	37	3	196129759	196129759	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69886090	69886090	+	5'UTR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B7	7364	broad.mit.edu	37	4	69978172	69978172	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54556378	54556378	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210650795	210650795	+	Silent	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210654162	210654162	+	Intron	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167711436	167711436	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158974203	158974203	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21968624	21968624	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43958709	43958709	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215799252	215799252	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246218	216246218	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373195	216373195	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216424444	216424444	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179458268	179458268	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144107322	144107322	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11950896	11950896	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP4	7375	broad.mit.edu	37	3	49331916	49331917	+	Frame_Shift_Ins	INS	-	GC	GC			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41075707	41075707	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52599143	52599143	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106774618	106774618	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	29029148	29029148	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627511	37627511	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627692	37627692	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45742536	45742536	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52436621	52436621	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	96665696	96665696	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	102637603	102637603	+	IGR	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104744157	104744157	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	118705054	118705054	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122921055	122921055	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183317	39183317	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48632021	48632021	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49327296	49327296	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55199429	55199429	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783194	55783194	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783482	55783482	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56510230	56510230	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059433	58059433	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59056210	59056210	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59056230	59056230	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16552754	16552754	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16552907	16552907	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	22161470	22161470	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38423489	38423489	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47761152	47761152	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55790301	55790301	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105467116	105467116	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634970	55634970	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68405960	68405960	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68485224	68485224	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22167280	22167280	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45333209	45333209	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009008	21009008	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31175232	31175232	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34781108	34781108	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34781298	34781298	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96985259	96985259	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34481876	34481876	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51680681	51680681	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69009566	69009566	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49707913	49707913	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58089227	58089227	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20047620	20047620	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20873867	20873867	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20874334	20874334	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39292213	39292213	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53727355	53727355	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55208875	55208875	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101736809	101736809	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102252415	102252415	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469271	104469271	+	IGR	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106240748	106240748	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147313781	147313781	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80749109	80749109	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29449673	29449673	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4610584	4610584	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15199820	15199820	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15199838	15199838	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617122	20617122	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22200628	22200628	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	111118646	111118646	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130970625	130970625	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132384304	132384304	+	IGR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176881750	176881750	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109115607	109115607	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	160171121	160171121	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180864078	180864078	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194477948	194477948	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195347023	195347023	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420290	75420290	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130059991	130059991	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165865212	165865212	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49292430	49292430	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70172739	70172739	+	IGR	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73616020	73616020	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107060926	107060926	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114726042	114726042	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174812028	174812047	+	IGR	DEL	AAGGAAAGAAGGAAGGAAGA	-	-	rs111559272		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75216976	75216976	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106114504	106114504	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112683533	112683533	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25272913	25272913	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97096388	97096388	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46037500	46037500	+	IGR	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63022911	63022911	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767599	9767599	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47885692	47885692	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6756586	6756586	+	IGR	SNP	T	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	68319127	68319127	+	IGR	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7217685	7217685	+	IGR	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73122023	73122023	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73126461	73126461	+	IGR	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81507284	81507284	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85861200	85861200	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801032	88801032	+	IGR	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44153825	44153825	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76090253	76090253	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49431305	49431306	+	IGR	DNP	TC	CT	CT			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74964838	74964838	+	IGR	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828142	79828142	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92478602	92478602	+	IGR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2643055	2643055	+	Intron	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133050257	133050257	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79930063	79930064	+	Intron	INS	-	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98928739	98928739	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA5A	4013	broad.mit.edu	37	11	123995028	123995028	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9503275	9503275	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR36	134430	broad.mit.edu	37	5	110448812	110448812	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167246931	167246931	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167320081	167320081	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36564349	36564349	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66431604	66431604	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	980452	980452	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167833266	167833266	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7684584	7684584	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAB2	56949	broad.mit.edu	37	19	7685330	7685330	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17288609	17288609	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56365271	56365271	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21827146	21827146	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217039984	217039984	+	Intron	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF6	286451	broad.mit.edu	37	X	67738586	67738586	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100388610	100388610	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB16	7704	broad.mit.edu	37	11	114121118	114121118	+	Silent	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203797542	203797542	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46584555	46584555	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52975360	52975360	+	Missense_Mutation	SNP	G	A	A	rs138715096		TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111697745	111697745	+	5'UTR	SNP	T	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC14	79683	broad.mit.edu	37	6	157963722	157963722	+	Silent	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC4	55146	broad.mit.edu	37	7	6621957	6621958	+	Intron	INS	-	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766554	77766554	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767526	77767526	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68255910	68255910	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147106546	147106546	+	3'UTR	SNP	A	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN2	342357	broad.mit.edu	37	16	25255481	25255481	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF154	7710	broad.mit.edu	37	19	58213791	58213791	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF18	7566	broad.mit.edu	37	17	11895735	11895735	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF207	7756	broad.mit.edu	37	17	30689982	30689982	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22153389	22153389	+	3'UTR	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52193223	52193223	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF239	8187	broad.mit.edu	37	10	44052872	44052872	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24289400	24289400	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53302033	53302033	+	3'UTR	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF322A	79692	broad.mit.edu	37	6	26637642	26637642	+	Silent	SNP	G	A	A	rs146500157	byFrequency;by1000genomes	TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF33A	7581	broad.mit.edu	37	10	38306476	38306476	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2464480	2464480	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF382	84911	broad.mit.edu	37	19	37117328	37117328	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF382	84911	broad.mit.edu	37	19	37117865	37117865	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58083558	58083558	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58086989	58086989	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF431	170959	broad.mit.edu	37	19	21366647	21366647	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178391653	178391653	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32843758	32843758	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37905078	37905078	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38229842	38229842	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	124079702	124079702	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF774	342132	broad.mit.edu	37	15	90903722	90903722	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38184452	38184452	+	5'Flank	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60641198	60641198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21214640	21214640	+	Intron	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113618191	113618191	+	Intron	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3961243	3961243	+	Intron	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55062859	55062859	+	RNA	SNP	A	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58763271	58763271	+	Intron	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490373	20490373	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25490648	25490648	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15872020	15872021	+	Intron	INS	-	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23309338	23309338	+	Intron	SNP	G	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23328685	23328685	+	RNA	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148891586	148891586	+	RNA	SNP	A	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28739536	28739536	+	Intron	SNP	T	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	20731645	20731645	+	5'Flank	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96652661	96652661	+	RNA	SNP	C	T	T			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374473	95374473	+	RNA	SNP	G	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	125155162	125155162	+	Intron	SNP	C	A	A			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
