Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
GABRD	2563	broad.mit.edu	36	1	1951512	1951512	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1951512	1951512	GABRD	1	C	C	T	19
PTPRF	5792	broad.mit.edu	36	1	43817146	43817146	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	43817146	43817146	PTPRF	1	G	G	A	40
GBA	2629	broad.mit.edu	36	1	153473786	153473786	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	153473786	153473786	GBA	1	T	T	C	60
RET	5979	broad.mit.edu	36	10	42939221	42939221	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	42939221	42939221	RET	10	C	C	T	23
OR52B6	340980	broad.mit.edu	36	11	5559626	5559626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5559626	5559626	OR52B6	11	G	G	T	35
SYT7	9066	broad.mit.edu	36	11	61057099	61057099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61057099	61057099	SYT7	11	G	G	A	39
STX5	6811	broad.mit.edu	36	11	62351640	62351640	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Nonsense_Mutation	SNP	62351640	62351640	STX5	11	G	G	A	39
SHANK2	22941	broad.mit.edu	36	11	70026568	70026568	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70026568	70026568	SHANK2	11	G	G	C	40
RNFT2	84900	broad.mit.edu	36	12	115756109	115756109	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	115756109	115756109	RNFT2	12	G	G	C	40
POTEG	404785	broad.mit.edu	36	14	18623823	18623823	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18623823	18623823	POTEG	14	G	G	A	40
C14orf102	55051	broad.mit.edu	36	14	89825232	89825232	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89825232	89825232	C14orf102	14	C	C	T	25
INO80	54617	broad.mit.edu	36	15	39171602	39171602	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39171602	39171602	INO80	15	T	T	C	52
C17orf97	400566	broad.mit.edu	36	17	263337	263337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	263337	263337	C17orf97	17	C	C	T	26
MYO18A	399687	broad.mit.edu	36	17	24461139	24461139	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24461139	24461139	MYO18A	17	C	C	G	31
OR7G1	125962	broad.mit.edu	36	19	9086745	9086745	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9086745	9086745	OR7G1	19	C	C	G	32
ZNF208	7757	broad.mit.edu	36	19	21947816	21947816	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	21947816	21947816	ZNF208	19	C	C	A	24
LRP3	4037	broad.mit.edu	36	19	38388221	38388221	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	38388221	38388221	LRP3	19	C	C	T	19
DYRK1B	9149	broad.mit.edu	36	19	45011038	45011038	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	45011038	45011038	DYRK1B	19	G	G	A	41
DYRK1B	9149	broad.mit.edu	36	19	45012486	45012486	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45012486	45012486	DYRK1B	19	G	G	C	45
ATP6V1A	523	broad.mit.edu	36	3	114980320	114980320	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	114980320	114980320	ATP6V1A	3	C	C	G	31
USO1	8615	broad.mit.edu	36	4	76911071	76911071	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	76911071	76911071	USO1	4	G	G	T	44
PCDHGB5	56101	broad.mit.edu	36	5	140758483	140758483	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140758483	140758483	PCDHGB5	5	G	G	A	39
HIST1H2AE	3012	broad.mit.edu	36	6	26325293	26325293	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26325293	26325293	HIST1H2AE	6	G	G	A	35
C6orf27	80737	broad.mit.edu	36	6	31844873	31844873	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	31844873	31844873	C6orf27	6	G	G	C	48
RBAK	57786	broad.mit.edu	36	7	5063848	5063848	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	5063848	5063848	RBAK	7	T	T	G	49
HOXA10	3206	broad.mit.edu	36	7	27179982	27179982	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27179982	27179982	HOXA10	7	A	A	G	6
POR	5447	broad.mit.edu	36	7	75453614	75453614	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75453614	75453614	POR	7	A	A	T	12
DLX6	1750	broad.mit.edu	36	7	96477083	96477083	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	96477083	96477083	DLX6	7	A	A	T	9
PPP2R2A	5520	broad.mit.edu	36	8	26283770	26283770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	26283770	26283770	PPP2R2A	8	C	C	T	26
FNTA	2339	broad.mit.edu	36	8	43030803	43030803	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43030803	43030803	FNTA	8	G	G	T	37
ST18	9705	broad.mit.edu	36	8	53240338	53240338	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	53240338	53240338	ST18	8	A	A	G	2
DPY19L4	286148	broad.mit.edu	36	8	95816070	95816070	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	95816070	95816070	DPY19L4	8	G	G	A	42
COL22A1	169044	broad.mit.edu	36	8	139687806	139687806	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	139687806	139687806	COL22A1	8	C	C	T	23
ELAVL2	1993	broad.mit.edu	36	9	23682598	23682598	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	23682598	23682598	ELAVL2	9	A	A	T	14
ZNF462	58499	broad.mit.edu	36	9	108731020	108731020	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	108731020	108731020	ZNF462	9	G	G	C	46
ROD1	9991	broad.mit.edu	36	9	114030520	114030520	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	114030520	114030520	ROD1	9	C	C	G	25
SAGE1	55511	broad.mit.edu	36	X	134820333	134820333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134820333	134820333	SAGE1	23	G	G	A	40
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina GAIIx	Broad	Missense_Mutation	SNP	7517830	7517830	TP53	17	G	G	T	35
C2orf16	84226	broad.mit.edu	36	2	27658063	27658086	+	In_Frame_Del	DEL	AGAGAAGACATCACAGTCCCTCTA	-	AGAGAAGACATCACAGTCCCTCTA	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	27658063	27658086	C2orf16	2	AGAGAAGACATCACAGTCCCTCTA	-	AGAGAAGACATCACAGTCCCTCTA	11
BAIAP2L2	80115	broad.mit.edu	36	22	36813120	36813121	+	In_Frame_Ins	INS	-	CATGGAGGT	-	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Ins	INS	36813120	36813121	BAIAP2L2	22	-	CATGGAGGT	-	10
BRD2	6046	broad.mit.edu	36	6	33052576	33052577	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-24-1552-01	TCGA-24-1552-10			T	-	-	-	Unknown	Valid	Somatic	Phase_I	Capture				Illumina GAIIx	Broad	Frame_Shift_Ins	INS	33052576	33052577	BRD2	6	-	T	-	32
