Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
HSPG2	3339	broad.mit.edu	36	1	22041354	22041354	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22041354	22041354	HSPG2	1	G	G	A	48
C1orf87	127795	broad.mit.edu	36	1	60278292	60278292	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60278292	60278292	C1orf87	1	C	C	T	30
RPRD2	23248	broad.mit.edu	36	1	148710426	148710426	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	148710426	148710426	RPRD2	1	G	G	A	44
CHIT1	1118	broad.mit.edu	36	1	201460810	201460810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	201460810	201460810	CHIT1	1	G	G	A	37
C1orf95	375057	broad.mit.edu	36	1	224851216	224851216	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	224851216	224851216	C1orf95	1	C	C	A	25
FRMPD2	143162	broad.mit.edu	36	10	49062833	49062833	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	49062833	49062833	FRMPD2	10	C	C	T	31
CCDC6	8030	broad.mit.edu	36	10	61222782	61222782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61222782	61222782	CCDC6	10	G	G	A	41
OPN4	94233	broad.mit.edu	36	10	88409632	88409632	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	88409632	88409632	OPN4	10	G	G	A	43
MYOF	26509	broad.mit.edu	36	10	95079462	95079462	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	95079462	95079462	MYOF	10	C	C	T	31
KCNJ1	3758	broad.mit.edu	36	11	128214814	128214814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128214814	128214814	KCNJ1	11	C	C	T	27
KCNA5	3741	broad.mit.edu	36	12	5023889	5023889	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	5023889	5023889	KCNA5	12	C	C	A	25
ATXN2	6311	broad.mit.edu	36	12	110392426	110392426	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	110392426	110392426	ATXN2	12	T	T	C	51
PITPNM2	57605	broad.mit.edu	36	12	122063189	122063189	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	122063189	122063189	PITPNM2	12	G	G	C	35
NUSAP1	51203	broad.mit.edu	36	15	39428673	39428673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39428673	39428673	NUSAP1	15	G	G	A	42
CREBBP	1387	broad.mit.edu	36	16	3728597	3728597	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3728597	3728597	CREBBP	16	A	A	G	12
CHD9	80205	broad.mit.edu	36	16	51859340	51859340	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51859340	51859340	CHD9	16	G	G	T	44
ADAT1	23536	broad.mit.edu	36	16	74208646	74208646	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74208646	74208646	ADAT1	16	C	C	A	26
P2RX5	5026	broad.mit.edu	36	17	3531948	3531949	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	3531948	3531949	P2RX5	17	TC	TC	AA	54
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518990	7518990	TP53	17	A	A	G	12
ARHGEF15	22899	broad.mit.edu	36	17	8157081	8157081	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8157081	8157081	ARHGEF15	17	C	C	T	31
FLII	2314	broad.mit.edu	36	17	18091253	18091253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18091253	18091253	FLII	17	G	G	A	45
KIAA0195	9772	broad.mit.edu	36	17	71000178	71000178	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71000178	71000178	KIAA0195	17	A	A	C	14
DLGAP1	9229	broad.mit.edu	36	18	3869897	3869897	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3869897	3869897	DLGAP1	18	C	C	T	19
CDC37	11140	broad.mit.edu	36	19	10367867	10367867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10367867	10367867	CDC37	19	G	G	A	40
LILRA6	79168	broad.mit.edu	36	19	59436085	59436085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	59436085	59436085	LILRA6	19	C	C	A	26
GALNT14	79623	broad.mit.edu	36	2	31042594	31042594	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31042594	31042594	GALNT14	2	C	C	T	27
GALNT13	114805	broad.mit.edu	36	2	155015182	155015182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	155015182	155015182	GALNT13	2	G	G	A	37
EVX2	344191	broad.mit.edu	36	2	176656622	176656622	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	176656622	176656622	EVX2	2	C	C	A	27
PAX3	5077	broad.mit.edu	36	2	222868567	222868567	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	222868567	222868567	PAX3	2	G	G	C	44
ESF1	51575	broad.mit.edu	36	20	13704572	13704572	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13704572	13704572	ESF1	20	C	C	G	21
NINL	22981	broad.mit.edu	36	20	25446416	25446416	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	25446416	25446416	NINL	20	C	C	T	32
BPIL1	80341	broad.mit.edu	36	20	31072778	31072778	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31072778	31072778	BPIL1	20	G	G	A	40
FAM65C	140876	broad.mit.edu	36	20	48669995	48669995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48669995	48669995	FAM65C	20	C	C	T	23
IL10RB	3588	broad.mit.edu	36	21	33574013	33574013	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33574013	33574013	IL10RB	21	T	T	C	49
ITSN1	6453	broad.mit.edu	36	21	34013029	34013029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34013029	34013029	ITSN1	21	G	G	C	44
PCNT	5116	broad.mit.edu	36	21	46594105	46594105	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46594105	46594105	PCNT	21	G	G	C	44
CLTCL1	8218	broad.mit.edu	36	22	17563895	17563895	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	17563895	17563895	CLTCL1	22	C	C	T	21
PROS1	5627	broad.mit.edu	36	3	95094613	95094613	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	95094613	95094613	PROS1	3	C	C	T	19
ZFP42	132625	broad.mit.edu	36	4	189161254	189161254	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	189161254	189161254	ZFP42	4	A	A	C	1
STK38	11329	broad.mit.edu	36	6	36574117	36574117	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	36574117	36574117	STK38	6	C	C	T	18
GRM1	2911	broad.mit.edu	36	6	146797326	146797326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146797326	146797326	GRM1	6	G	G	A	37
MAS1	4142	broad.mit.edu	36	6	160248035	160248035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	160248035	160248035	MAS1	6	G	G	T	47
C7orf64	84060	broad.mit.edu	36	7	92002196	92002196	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	92002196	92002196	C7orf64	7	T	T	C	52
SVOPL	136306	broad.mit.edu	36	7	137961258	137961258	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	137961258	137961258	SVOPL	7	G	G	C	34
NOS3	4846	broad.mit.edu	36	7	150329335	150329335	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	150329335	150329335	NOS3	7	G	G	A	43
ROD1	9991	broad.mit.edu	36	9	114029723	114029723	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114029723	114029723	ROD1	9	T	T	G	62
CTAG2	30848	broad.mit.edu	36	X	153534019	153534019	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	153534019	153534019	CTAG2	23	G	G	T	43
UBXN11	91544	broad.mit.edu	36	1	26481399	26481476	+	In_Frame_Del	DEL	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	26481399	26481476	UBXN11	1	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	30
FAM86B2	653333	broad.mit.edu	36	8	12335964	12335966	+	In_Frame_Del	DEL	CTG	-	CTG	novel	Unknown	TCGA-31-1950-01	TCGA-31-1950-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	12335964	12335966	FAM86B2	8	CTG	-	CTG	32
