Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA10	10349	broad.mit.edu	37	17	67186584	67186584	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67186584	67186584	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48318349	48318349	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48550739	48550739	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48634509	48634509	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48318349	48318349	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48550739	48550739	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183667663	183667663	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183667663	183667663	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17464659	17464659	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17464659	17464659	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61561185	61561185	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61564148	61564148	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61561185	61561185	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61564148	61564148	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8418165	8418165	+	Silent	SNP	C	T	T	rs35092737	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL5	51703	broad.mit.edu	37	10	114169302	114169302	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL5	51703	broad.mit.edu	37	10	114169302	114169302	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20480763	20480763	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20480763	20480763	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236902645	236902645	+	Missense_Mutation	SNP	G	T	T	rs112882610		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236902645	236902645	+	Missense_Mutation	SNP	G	T	T	rs112882610		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123336740	123336740	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123336740	123336740	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39502998	39502998	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39581361	39581361	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39502998	39502998	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39581361	39581361	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156991474	156991474	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156991474	156991474	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3654111	3654111	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106173436	106173436	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444661	106444661	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106173436	106173436	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444661	106444661	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107034639	107034639	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107062235	107062235	+	RNA	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178585744	178585744	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178585744	178585744	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178770885	178770885	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73188856	73188856	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64569202	64569202	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84659802	84659802	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84659802	84659802	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167779891	167779891	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167779891	167779891	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131833728	131833728	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132002963	132002963	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132052591	132052591	+	5'UTR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131833728	131833728	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132052591	132052591	+	5'UTR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADHFE1	137872	broad.mit.edu	37	8	67364387	67364387	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA1	134	broad.mit.edu	37	1	203134620	203134620	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA1	134	broad.mit.edu	37	1	203134620	203134620	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP11	119385	broad.mit.edu	37	10	88769369	88769369	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP11	119385	broad.mit.edu	37	10	88769369	88769369	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP6	414189	broad.mit.edu	37	10	51768660	51768660	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP6	414189	broad.mit.edu	37	10	51768660	51768660	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL3	340351	broad.mit.edu	37	7	134814233	134814233	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL3	340351	broad.mit.edu	37	7	134814233	134814233	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGGF1	55109	broad.mit.edu	37	5	76358802	76358802	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGGF1	55109	broad.mit.edu	37	5	76358802	76358802	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100353473	100353473	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100353473	100353473	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84516068	84516068	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT9	84803	broad.mit.edu	37	4	84516068	84516068	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	434430	434430	+	Silent	SNP	G	A	A	rs111334085		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	434430	434430	+	Silent	SNP	G	A	A	rs111334085		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHR	196	broad.mit.edu	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186335058	186335058	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186335058	186335058	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4771898	4771898	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4771898	4771898	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77987585	77987585	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77987585	77987585	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55193622	55193622	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55193622	55193622	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134254141	134254141	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134254141	134254141	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5040685	5040685	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38395968	38395969	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38395968	38395969	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104190579	104190579	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOB	229	broad.mit.edu	37	9	104190579	104190579	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34175368	34175368	+	5'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34175368	34175368	+	5'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110966061	110966061	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29551229	29551229	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29551229	29551229	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113350384	113350384	+	Missense_Mutation	SNP	C	T	T	rs34120296		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113350384	113350384	+	Missense_Mutation	SNP	C	T	T	rs34120296		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202436667	202436667	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202483879	202483879	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202436667	202436667	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202483879	202483879	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11188891	11188891	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1L2	83650	broad.mit.edu	37	8	11188891	11188891	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	33989433	33989433	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	33989433	33989433	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41551533	41551533	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41553923	41553923	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41581079	41581079	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41584919	41584919	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41551533	41551533	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41553923	41553923	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41581079	41581079	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41584919	41584919	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	113803112	113803112	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153332	114153332	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114158799	114158799	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114274319	114274319	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	113803112	113803112	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114153332	114153332	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114158799	114158799	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114274319	114274319	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61833765	61833765	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61833765	61833765	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33096661	33096661	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD29	147463	broad.mit.edu	37	18	21209791	21209791	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD29	147463	broad.mit.edu	37	18	21209791	21209791	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1A	23294	broad.mit.edu	37	6	35053711	35053711	+	Missense_Mutation	SNP	G	T	T	rs143845391		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36589259	36589259	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201533401	201533401	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201533401	201533401	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2111839	2111839	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2111839	2111839	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72082745	72082745	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72082745	72082745	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APH1B	83464	broad.mit.edu	37	15	63579603	63579603	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APH1B	83464	broad.mit.edu	37	15	63579603	63579603	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21228213	21228213	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58465266	58465266	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP9	366	broad.mit.edu	37	15	58465266	58465266	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115339077	115339077	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115339077	115339077	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24975638	24975638	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24975638	24975638	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119013643	119013643	+	5'UTR	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119013643	119013643	+	5'UTR	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128842434	128842434	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128842434	128842434	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11162553	11162553	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155931858	155931858	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155931858	155931858	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63845390	63845390	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5B	84159	broad.mit.edu	37	10	63845390	63845390	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AS3MT	57412	broad.mit.edu	37	10	104638636	104638636	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AS3MT	57412	broad.mit.edu	37	10	104638636	104638636	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	123007014	123007014	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPG	374569	broad.mit.edu	37	14	104552111	104552111	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197058976	197058976	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197074309	197074309	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197058976	197058976	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197074309	197074309	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927566	176927566	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983875	176983875	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927566	176927566	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176983875	176983875	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1403796	1403796	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1403796	1403796	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161790982	161790982	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161790982	161790982	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4A	115201	broad.mit.edu	37	X	107393162	107393162	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113488979	113488979	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160104960	160104960	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160104960	160104960	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42482016	42482016	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42482016	42482016	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36051554	36051554	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36051554	36051554	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5G3	518	broad.mit.edu	37	2	176049251	176049251	+	5'Flank	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5G3	518	broad.mit.edu	37	2	176049251	176049251	+	5'Flank	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50351526	50351526	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71604061	71604061	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT2	135152	broad.mit.edu	37	6	71604061	71604061	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11026656	11026656	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1396022	1396022	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1396022	1396022	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76740022	76740022	+	Silent	SNP	C	G	G	rs150530553		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76740022	76740022	+	Silent	SNP	C	G	G	rs150530553		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCCIP	56647	broad.mit.edu	37	10	127511921	127511921	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70818542	70818542	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70818542	70818542	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN3	55909	broad.mit.edu	37	8	22487494	22487494	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69098254	69098254	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69098254	69098254	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43289199	43289199	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43297725	43297725	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43289199	43289199	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43297725	43297725	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137486821	137486821	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137486821	137486821	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49691797	49691797	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49691797	49691797	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56400645	56400645	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56400645	56400645	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf47	254427	broad.mit.edu	37	10	11908754	11908754	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf47	254427	broad.mit.edu	37	10	11908754	11908754	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf48	79081	broad.mit.edu	37	11	62432976	62432976	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61522909	61522909	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61522909	61522909	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82871186	82871187	+	Intron	DNP	TA	CG	CG			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf40	283461	broad.mit.edu	37	12	40114571	40114571	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112646247	112646247	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112646247	112646247	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45711253	45711253	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45711253	45711253	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81371380	81371380	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf179	112752	broad.mit.edu	37	14	76488667	76488667	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf179	112752	broad.mit.edu	37	14	76488667	76488667	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf93	60686	broad.mit.edu	37	14	23468201	23468201	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf93	60686	broad.mit.edu	37	14	23468206	23468206	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf93	60686	broad.mit.edu	37	14	23468201	23468201	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf93	60686	broad.mit.edu	37	14	23468206	23468206	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81436103	81436103	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf26	161502	broad.mit.edu	37	15	81436103	81436103	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921921	24921921	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921921	24921921	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36910096	36910097	+	Intron	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36910096	36910097	+	Intron	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640257	34640257	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf55	256646	broad.mit.edu	37	15	34640257	34640257	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf42	79736	broad.mit.edu	37	17	29231000	29231000	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf41	126123	broad.mit.edu	37	19	50665946	50665946	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf41	126123	broad.mit.edu	37	19	50665946	50665946	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51768891	51768891	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769159	51769159	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769163	51769163	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51768891	51768891	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769159	51769159	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769163	51769163	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737611	247737611	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737611	247737611	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055219	75055219	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055219	75055219	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf65	164127	broad.mit.edu	37	1	223567913	223567913	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf65	164127	broad.mit.edu	37	1	223567913	223567913	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684198	34684198	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684198	34684198	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf11	54994	broad.mit.edu	37	20	61576189	61576189	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf11	54994	broad.mit.edu	37	20	61576189	61576189	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf12	55184	broad.mit.edu	37	20	18370989	18370989	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf12	55184	broad.mit.edu	37	20	18370989	18370989	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf194	25943	broad.mit.edu	37	20	3234371	3234371	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf194	25943	broad.mit.edu	37	20	3234371	3234371	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf29	55317	broad.mit.edu	37	20	3803011	3803011	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf29	55317	broad.mit.edu	37	20	3803011	3803011	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132509028	132509028	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132509028	132509028	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf3	6936	broad.mit.edu	37	2	75916057	75916057	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74847850	74847850	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119452196	119452196	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119452196	119452196	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14813428	14813428	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf38	285237	broad.mit.edu	37	3	88202662	88202662	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf38	285237	broad.mit.edu	37	3	88202662	88202662	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81307686	81307686	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40948089	40948089	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120911527	120911527	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120911527	120911527	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112462461	112462461	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27891295	27891295	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27891295	27891295	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15591483	15591483	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135602879	135602879	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49708884	49708884	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49710885	49710885	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49731069	49731069	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49708884	49708884	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49710885	49710885	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49731069	49731069	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA11	770	broad.mit.edu	37	19	49142169	49142169	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA11	770	broad.mit.edu	37	19	49142169	49142169	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13386557	13386557	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13386557	13386557	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181686252	181686252	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708286	181708286	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181740385	181740385	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181686252	181686252	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181708286	181708286	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1262039	1262039	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1259500	1259500	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1262039	1262039	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81594951	81594951	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54913116	54913116	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1950021	1950021	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1950021	1950021	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18824999	18824999	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18824999	18824999	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54445373	54445373	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54445373	54445373	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174969257	174969257	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174969257	174969257	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44293940	44293940	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138713801	138713801	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138713801	138713801	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44150906	44150906	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44150906	44150906	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30882156	30882156	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30882156	30882156	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2955025	2955025	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2955025	2955025	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202068563	202068563	+	Intron	SNP	G	T	T	rs41322747	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202068563	202068563	+	Intron	SNP	G	T	T	rs41322747	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121972965	121972965	+	5'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002901	122002901	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	121972965	121972965	+	5'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002901	122002901	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43940260	43940260	+	5'UTR	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43940260	43940260	+	5'UTR	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89408538	89408538	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89408538	89408538	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57762247	57762247	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57762247	57762247	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77265972	77265972	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77265972	77265972	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC15	80071	broad.mit.edu	37	11	124829042	124829042	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC37	348807	broad.mit.edu	37	3	126138879	126138879	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC37	348807	broad.mit.edu	37	3	126138879	126138879	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64001940	64001940	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191075677	191075677	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191075677	191075677	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC8	83987	broad.mit.edu	37	19	46914764	46914764	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC8	83987	broad.mit.edu	37	19	46914764	46914764	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33266313	33266313	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33266313	33266313	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7639048	7639048	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7647772	7647772	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7639048	7639048	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7647772	7647772	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7811983	7811983	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7811983	7811983	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2BP2	10421	broad.mit.edu	37	16	30365716	30365717	+	Intron	INS	-	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD2BP2	10421	broad.mit.edu	37	16	30365716	30365717	+	Intron	INS	-	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805488	157805488	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157805488	157805488	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100856240	100856240	+	Intron	DEL	A	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25B	994	broad.mit.edu	37	20	3781365	3781365	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25B	994	broad.mit.edu	37	20	3781365	3781365	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487744	24487744	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487744	24487744	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83636234	83636235	+	Intron	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83636234	83636235	+	Intron	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60449073	60449073	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323317	31323317	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323317	31323317	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63547735	63547735	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63547735	63547735	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176011426	176011426	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176011426	176011426	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50801307	50801307	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50801307	50801307	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170L	645455	broad.mit.edu	37	4	119436155	119436155	+	5'Flank	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170L	645455	broad.mit.edu	37	4	119436155	119436155	+	5'Flank	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP78	84131	broad.mit.edu	37	9	80879270	80879270	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP78	84131	broad.mit.edu	37	9	80879270	80879270	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49527128	49527129	+	Intron	DEL	CC	-	-	rs62126026	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49527128	49527129	+	Intron	DEL	CC	-	-	rs62126026	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6709107	6709107	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6709107	6709107	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40042045	40042045	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40042045	40042045	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40122580	40122580	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21863424	21863424	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21863424	21863424	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53358160	53358160	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16652923	16652923	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16652923	16652923	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST4	10164	broad.mit.edu	37	16	71571552	71571552	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST4	10164	broad.mit.edu	37	16	71571552	71571552	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24532187	24532187	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87012868	87012868	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87012868	87012868	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143036571	143036571	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143036571	143036571	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC5A	23601	broad.mit.edu	37	7	141643858	141643858	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7303678	7303678	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7303678	7303678	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57743971	57743971	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUAP1	23059	broad.mit.edu	37	16	3554624	3554624	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUAP1	23059	broad.mit.edu	37	16	3554624	3554624	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22208545	22208545	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMAS	55907	broad.mit.edu	37	12	22208545	22208545	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008273	99008273	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008273	99008273	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87738644	87738644	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87738644	87738644	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205022256	205022256	+	5'UTR	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205030313	205030313	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205022256	205022256	+	5'UTR	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146741276	146741276	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914552	147914552	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914552	147914552	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204319	125204319	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204319	125204319	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103488398	103488398	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103488398	103488398	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75848104	75848104	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75848104	75848104	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121170441	121170441	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121170441	121170441	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139890364	139890364	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139890364	139890364	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189875383	189875383	+	Missense_Mutation	SNP	G	T	T	rs140646380	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189862992	189862992	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189875383	189875383	+	Missense_Mutation	SNP	G	T	T	rs140646380	byFrequency	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110839401	110839401	+	Intron	SNP	C	T	T	rs144081890	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111130348	111130348	+	Splice_Site	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111130348	111130348	+	Splice_Site	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107865154	107865154	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130289563	130289563	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48614643	48614643	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47643838	47643838	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47643838	47643838	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4390918	4390918	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4390918	4390918	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6A2	1339	broad.mit.edu	37	16	31439550	31439550	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6A2	1339	broad.mit.edu	37	16	31439550	31439550	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325757	166325757	+	Intron	DEL	G	-	-	rs2241814	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166325757	166325757	+	Intron	DEL	G	-	-	rs2241814	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207822920	207822920	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207822920	207822920	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPPED1	55313	broad.mit.edu	37	16	12758931	12758931	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPPED1	55313	broad.mit.edu	37	16	12758931	12758931	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT2	1376	broad.mit.edu	37	1	53676835	53676835	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT2	1376	broad.mit.edu	37	1	53676835	53676835	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXCR1	53336	broad.mit.edu	37	X	88008704	88008704	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXCR1	53336	broad.mit.edu	37	X	88008704	88008704	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125516684	125516684	+	Intron	SNP	C	A	A	rs142645729	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125521438	125521438	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125516684	125516684	+	Intron	SNP	C	A	A	rs142645729	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125521438	125521438	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390141	197390141	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390141	197390141	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76254477	76254477	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76254477	76254477	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1424515	1424515	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1424515	1424515	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2965485	2965485	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3432521	3432521	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645893	4645893	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3432521	3432521	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645893	4645893	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34049105	34049106	+	Intron	INS	-	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34066431	34066432	+	Intron	DNP	GG	TA	TA			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34049105	34049106	+	Intron	INS	-	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34066431	34066432	+	Intron	DNP	GG	TA	TA			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113267393	113267393	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421167	113421167	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113568851	113568851	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113657364	113657364	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113421167	113421167	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113657364	113657364	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856884	134856884	+	3'UTR	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856884	134856884	+	3'UTR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67748709	67748709	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41274850	41274850	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41274850	41274850	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11565244	11565244	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11565244	11565244	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNS	1497	broad.mit.edu	37	17	3563835	3563835	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41453091	41453091	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41453091	41453091	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70275343	70275343	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17171353	17171353	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17171353	17171353	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101870904	101870904	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101870904	101870904	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48997006	48997006	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51504464	51504464	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51504464	51504464	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52779112	52779112	+	Intron	SNP	A	G	G	rs74829893	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99329068	99329068	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99329068	99329068	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025585	16025585	+	Silent	SNP	G	T	T	rs140718122		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025585	16025585	+	Silent	SNP	G	T	T	rs140718122		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZAP1	26528	broad.mit.edu	37	19	1418490	1418490	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZAP1	26528	broad.mit.edu	37	19	1418490	1418490	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50451744	50451744	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50923679	50923679	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50451744	50451744	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50923679	50923679	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31327080	31327080	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31327080	31327080	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN3	11258	broad.mit.edu	37	9	34621452	34621452	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN3	11258	broad.mit.edu	37	9	34621452	34621452	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110576256	110576256	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110576256	110576256	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70722001	70722001	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX21	9188	broad.mit.edu	37	10	70722006	70722006	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44611443	44611443	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44611443	44611443	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32487951	32487951	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32487951	32487951	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50016257	50016257	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50016257	50016257	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9680700	9680700	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX15	1665	broad.mit.edu	37	4	24541642	24541642	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111896296	111896296	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111896296	111896296	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38159209	38159209	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38159209	38159209	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245609	84245609	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245926	84245926	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245609	84245609	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245926	84245926	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1581027	1581027	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1581027	1581027	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32563220	32563220	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32563220	32563220	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	35993175	35993175	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	35993175	35993175	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88583970	88583970	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMTF1	9988	broad.mit.edu	37	7	86810589	86810592	+	Intron	DEL	TTAA	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820609	13820609	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820609	13820609	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196718076	196718076	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196718076	196718076	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38690580	38690581	+	5'UTR	INS	-	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56151456	56151456	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56151456	56151456	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117819891	117819891	+	3'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128830475	128830475	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169230287	169230287	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169267705	169267705	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169494661	169494661	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169230287	169230287	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169267705	169267705	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169483863	169483863	+	Intron	SNP	G	A	A	rs139049199	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169494661	169494661	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169508848	169508848	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51197942	51197942	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63008222	63008222	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63008222	63008222	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37664514	37664514	+	Missense_Mutation	SNP	C	G	G	rs34428315		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37664514	37664514	+	Missense_Mutation	SNP	C	G	G	rs34428315		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153584797	153584797	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153584728	153584728	+	5'UTR	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153584797	153584797	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPRX	503834	broad.mit.edu	37	19	54135451	54135451	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPRX	503834	broad.mit.edu	37	19	54135451	54135451	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7563932	7563932	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7585490	7585490	+	Silent	SNP	G	T	T	rs35379048	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7563932	7563932	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7585490	7585490	+	Silent	SNP	G	T	T	rs35379048	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX4	23220	broad.mit.edu	37	11	58949495	58949495	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX4	23220	broad.mit.edu	37	11	58949495	58949495	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP5	1847	broad.mit.edu	37	10	112262323	112262323	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1B	9149	broad.mit.edu	37	19	40316982	40316982	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1B	9149	broad.mit.edu	37	19	40316982	40316982	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4700242	4700242	+	Intron	SNP	G	T	T	rs73257448	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4700242	4700242	+	Intron	SNP	G	T	T	rs73257448	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71778361	71778361	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71778361	71778361	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137796602	137796602	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158135059	158135059	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF1	1879	broad.mit.edu	37	5	158135059	158135059	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131666256	131666256	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131666256	131666256	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83525562	83525563	+	Intron	DNP	TG	CT	CT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83525562	83525563	+	Intron	DNP	TG	CT	CT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22268069	22268069	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22268069	22268069	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8016095	8016095	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK1	2002	broad.mit.edu	37	X	47500598	47500598	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK3	2004	broad.mit.edu	37	12	96653534	96653534	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73457081	73457081	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33744407	33744407	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33744407	33744407	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48519237	48519237	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48519237	48519237	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101183242	101183242	+	Silent	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101183242	101183242	+	Silent	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46112818	46112819	+	3'UTR	DNP	CC	AG	AG			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46112818	46112819	+	3'UTR	DNP	CC	AG	AG			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46137701	46137701	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77707127	77707127	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77707127	77707127	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97477752	97477752	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400NL	347918	broad.mit.edu	37	12	132610920	132610920	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400NL	347918	broad.mit.edu	37	12	132610920	132610920	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32573907	32573907	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32573907	32573907	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47607038	47607038	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47607038	47607038	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89391035	89391035	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89391035	89391035	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226016497	226016497	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX1	2052	broad.mit.edu	37	1	226016497	226016497	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270370	56270370	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56274637	56274637	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56270370	56270370	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56274637	56274637	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212529880	212529880	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212578346	212578346	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212578346	212578346	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLEC1	27248	broad.mit.edu	37	2	54045035	54045035	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERLEC1	27248	broad.mit.edu	37	2	54045035	54045035	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNL	339768	broad.mit.edu	37	2	239040032	239040032	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNL	339768	broad.mit.edu	37	2	239040032	239040032	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP2	80004	broad.mit.edu	37	16	68265245	68265245	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRP2	80004	broad.mit.edu	37	16	68265245	68265245	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5682823	5682823	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5803930	5803930	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44151591	44151591	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44151591	44151591	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	64567628	64567628	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2R	2149	broad.mit.edu	37	5	76029424	76029424	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169519136	169519136	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169519136	169519136	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166A	401565	broad.mit.edu	37	9	140138567	140138567	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166A	401565	broad.mit.edu	37	9	140138567	140138567	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222919870	222919870	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222919870	222919870	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29274652	29274652	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159052134	159052134	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159052134	159052134	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21825585	21825585	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21825939	21825939	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21825585	21825585	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24331969	24331969	+	5'Flank	DEL	A	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24331969	24331969	+	5'Flank	DEL	A	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29867330	29867330	+	Silent	SNP	C	A	A	rs146498252		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM59A	64762	broad.mit.edu	37	18	29867330	29867330	+	Silent	SNP	C	A	A	rs146498252		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24976550	24976550	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12232213	12232213	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73B	84895	broad.mit.edu	37	9	131822773	131822773	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43629263	43629263	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43629263	43629263	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144808840	144808840	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144808840	144808840	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10107451	10107451	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD5	60493	broad.mit.edu	37	20	3128052	3128052	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD5	60493	broad.mit.edu	37	20	3128052	3128052	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187538952	187538952	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187538952	187538952	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126337745	126337745	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126337745	126337745	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127710389	127710389	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127710389	127710389	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO16	157574	broad.mit.edu	37	8	28309761	28309761	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO16	157574	broad.mit.edu	37	8	28309761	28309761	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW12	285231	broad.mit.edu	37	3	48420061	48420061	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW5	54461	broad.mit.edu	37	9	139836896	139836896	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1G	2207	broad.mit.edu	37	1	161187954	161187954	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1G	2207	broad.mit.edu	37	1	161187954	161187954	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO2	115548	broad.mit.edu	37	5	72383455	72383455	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO2	115548	broad.mit.edu	37	5	72383455	72383455	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157556386	157556386	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157556386	157556386	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157514076	157514076	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157514076	157514076	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124988046	124988046	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125115354	125115354	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124988046	124988046	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125115354	125115354	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108281839	108281839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108281839	108281839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEV	54738	broad.mit.edu	37	2	219846816	219846816	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEV	54738	broad.mit.edu	37	2	219846816	219846816	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF4	2249	broad.mit.edu	37	11	69588313	69588313	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135291288	135291288	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135291288	135291288	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97052766	97052766	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97052766	97052766	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99567728	99567728	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99567728	99567728	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55775033	55775033	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55775033	55775033	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152276900	152276900	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89082578	89082578	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84528331	84528331	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84528331	84528331	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153588257	153588257	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153588257	153588257	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001854	29001854	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29007853	29007853	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001854	29001854	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29007853	29007853	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29068987	29068987	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43320574	43320574	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL1	752	broad.mit.edu	37	17	43320574	43320574	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171155084	171155084	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171155084	171155084	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203225393	203225393	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86600890	86600890	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86600890	86600890	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD4L5	653427	broad.mit.edu	37	9	70177793	70177794	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169533120	169533120	+	Silent	SNP	C	G	G	rs146116253		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXI1	2299	broad.mit.edu	37	5	169533120	169533120	+	Silent	SNP	C	G	G	rs146116253		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272906	52272906	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272906	52272906	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79402985	79402985	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79402985	79402985	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14812842	14812842	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14812842	14812842	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131228118	131228118	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131228118	131228118	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44974151	44974151	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44976031	44976031	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44974151	44974151	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44976031	44976031	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318653	71318653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318653	71318653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37427632	37427632	+	Intron	SNP	G	T	T	rs139305183	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37430722	37430722	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37427632	37427632	+	Intron	SNP	G	T	T	rs139305183	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37430722	37430722	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT1	2523	broad.mit.edu	37	19	49253722	49253722	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT1	2523	broad.mit.edu	37	19	49253722	49253722	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180630644	180630644	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180630644	180630644	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29578524	29578524	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46334749	46334749	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46334749	46334749	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27185175	27185175	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27185175	27185175	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27160146	27160146	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161569396	161569396	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161569396	161569396	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51759511	51759511	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51759511	51759511	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR1	2587	broad.mit.edu	37	18	74963084	74963085	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALR1	2587	broad.mit.edu	37	18	74963084	74963085	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATM	2628	broad.mit.edu	37	15	45654417	45654417	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATM	2628	broad.mit.edu	37	15	45654417	45654417	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72618103	72618103	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158409367	158409367	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117884615	117884615	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117884615	117884615	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT1	28964	broad.mit.edu	37	17	27910597	27910597	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT1	28964	broad.mit.edu	37	17	27910597	27910597	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110418599	110418599	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110418599	110418599	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33038875	33038875	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33038875	33038875	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6606508	6606508	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6606508	6606508	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42005727	42005727	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102968378	102968378	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102976891	102976891	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102968378	102968378	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102976891	102976891	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8F	100132565	broad.mit.edu	37	15	28632665	28632665	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8F	100132565	broad.mit.edu	37	15	28632739	28632739	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8F	100132565	broad.mit.edu	37	15	28632739	28632739	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20328494	20328494	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20328494	20328494	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP5	2814	broad.mit.edu	37	3	194118069	194118069	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP5	2814	broad.mit.edu	37	3	194118069	194118069	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33588796	33588796	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33588796	33588796	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67579829	67579829	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67579829	67579829	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176573023	176573023	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176573023	176573023	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23306033	23306033	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23306033	23306033	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22390178	22390178	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22390178	22390178	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142758528	142758528	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142758528	142758528	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100328780	100328780	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100328780	100328780	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR25	2848	broad.mit.edu	37	1	200842857	200842857	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176026665	176026665	+	Frame_Shift_Del	DEL	G	-	-	rs139277418	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176026665	176026665	+	Frame_Shift_Del	DEL	G	-	-	rs139277418	byFrequency	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX7	2882	broad.mit.edu	37	1	53073948	53073948	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX7	2882	broad.mit.edu	37	1	53073948	53073948	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113623284	113623284	+	Intron	SNP	G	A	A	rs143493664	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113604127	113604127	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122616903	122616903	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA3	2892	broad.mit.edu	37	X	122616903	122616903	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94343884	94343884	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94343884	94343884	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121140407	121140407	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121140407	121140407	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47491246	47491246	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47491246	47491246	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720744	146720744	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720744	146720744	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7456997	7456997	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71691024	71691024	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71691024	71691024	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27558947	27558947	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C2	2976	broad.mit.edu	37	2	27558947	27558947	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156629414	156629414	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156629414	156629414	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19078160	19078160	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19078160	19078160	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5247763	5247763	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5247763	5247763	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42168703	42168703	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42168703	42168703	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43447290	43447290	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43447290	43447290	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64067496	64067496	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64067496	64067496	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164147	32164148	+	5'Flank	DNP	AG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164147	32164148	+	5'Flank	DNP	AG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGFAC	3083	broad.mit.edu	37	4	3444869	3444869	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGFAC	3083	broad.mit.edu	37	4	3444869	3444869	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81331986	81331986	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81331986	81331986	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139285223	139285223	+	Missense_Mutation	SNP	C	A	A	rs56132157		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK2	28996	broad.mit.edu	37	7	139285223	139285223	+	Missense_Mutation	SNP	C	A	A	rs56132157		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AA	221613	broad.mit.edu	37	6	25726441	25726441	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AA	221613	broad.mit.edu	37	6	25726451	25726451	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143081590	143081590	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143081590	143081590	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB1	3146	broad.mit.edu	37	13	31128546	31128546	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGB1	3146	broad.mit.edu	37	13	31128546	31128546	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162909666	162909666	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162909666	162909666	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173491286	173491286	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173534364	173534364	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173491286	173491286	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173534364	173534364	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43034856	43034856	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43034856	43034856	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRPLL	92906	broad.mit.edu	37	2	38795456	38795456	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPCAL4	51440	broad.mit.edu	37	1	40148339	40148339	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPCAL4	51440	broad.mit.edu	37	1	40148339	40148339	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18301447	18301447	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18301447	18301447	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18303488	18303488	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRSP12	10247	broad.mit.edu	37	8	99129187	99129187	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRSP12	10247	broad.mit.edu	37	8	99129187	99129187	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21976735	21976735	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21977932	21977932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21976735	21976735	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HR	55806	broad.mit.edu	37	8	21977932	21977932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114405690	114405690	+	Intron	SNP	G	T	T	rs112001782		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114405690	114405690	+	Intron	SNP	G	T	T	rs112001782		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST1	9394	broad.mit.edu	37	2	129026217	129026217	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST1	9394	broad.mit.edu	37	2	129026217	129026217	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB2	3316	broad.mit.edu	37	11	111784250	111784250	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2B	3357	broad.mit.edu	37	2	231988653	231988653	+	5'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113865532	113865532	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154862701	154862701	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154862701	154862701	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L1	122509	broad.mit.edu	37	14	94563224	94563224	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L1	122509	broad.mit.edu	37	14	94563224	94563224	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102964544	102964544	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102964544	102964544	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27454550	27454550	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27454550	27454550	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68645484	68645484	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68645484	68645484	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27374034	27374034	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27374034	27374034	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166926994	166926994	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166926994	166926994	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15260554	15260554	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15260554	15260554	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153744497	153744499	+	Intron	DEL	GGT	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCK	124152	broad.mit.edu	37	16	19800281	19800281	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCK	124152	broad.mit.edu	37	16	19800281	19800281	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66620547	66620547	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66620547	66620547	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33067498	33067498	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33067498	33067498	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52211398	52211398	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52211398	52211398	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15730143	15730143	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31421644	31421644	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31421644	31421644	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187529427	187529427	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187529427	187529427	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102367988	102367988	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102367988	102367988	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7750965	7750965	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7750965	7750965	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54776266	54776266	+	3'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54776266	54776266	+	3'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7659034	7659034	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2B	9445	broad.mit.edu	37	13	48835306	48835306	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2B	9445	broad.mit.edu	37	13	48835306	48835306	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882470	152882470	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882785	152882785	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882470	152882470	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152882785	152882785	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64982747	64982747	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64982747	64982747	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124052943	124052943	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44547442	44547443	+	Intron	DEL	GT	-	-	rs72266255		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021590	5021590	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021590	5021590	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033978	30033978	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30034116	30034116	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033978	30033978	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30034116	30034116	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17794268	17794268	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17794268	17794268	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150645550	150645550	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150645550	150645550	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215368531	215368531	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154821445	154821445	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138647117	138647117	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36691143	36691143	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36694374	36694374	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36691143	36691143	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36694374	36694374	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202699059	202699059	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202699059	202699059	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55961743	55961743	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55961743	55961743	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5461293	5461293	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5461293	5461293	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5762559	5762559	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5762559	5762559	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30317504	30317504	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30317504	30317504	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21044096	21044096	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21044096	21044096	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241726852	241726852	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39761735	39761735	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39761735	39761735	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272294	55272294	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272294	55272294	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL4	3805	broad.mit.edu	37	19	55325108	55325108	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL4	3805	broad.mit.edu	37	19	55325108	55325108	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK6	5653	broad.mit.edu	37	19	51462294	51462294	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK6	5653	broad.mit.edu	37	19	51462294	51462294	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123041966	123041966	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123041966	123041966	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594296	39594296	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594296	39594296	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53189613	53189613	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53189613	53189613	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52881965	52881966	+	Intron	DNP	GT	AA	AA			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52884748	52884748	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52881965	52881966	+	Intron	DNP	GT	AA	AA			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52884748	52884748	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52827967	52827967	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52827967	52827967	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-1	85285	broad.mit.edu	37	17	39346675	39346675	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-1	85285	broad.mit.edu	37	17	39346675	39346675	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-7	100132476	broad.mit.edu	37	17	39240446	39240446	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-9	100132386	broad.mit.edu	37	17	39261628	39261628	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-9	100132386	broad.mit.edu	37	17	39261628	39261628	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTCAP3	200634	broad.mit.edu	37	2	27666044	27666044	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTCAP3	200634	broad.mit.edu	37	2	27666044	27666044	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153130579	153130579	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153130579	153130579	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1TD1	54596	broad.mit.edu	37	1	62675610	62675610	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1TD1	54596	broad.mit.edu	37	1	62675610	62675610	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201356819	201356819	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7015801	7015801	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7015801	7015801	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649485	129649485	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129649485	129649485	+	Silent	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAT	27040	broad.mit.edu	37	16	28996611	28996611	+	Translation_Start_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206781731	206781731	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206781731	206781731	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75596416	75596416	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48639211	48639211	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107393	55107393	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107393	55107393	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779755	54779755	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779755	54779755	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54781434	54781434	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1	167410	broad.mit.edu	37	5	96443237	96443237	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1	167410	broad.mit.edu	37	5	96443237	96443237	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO1	4004	broad.mit.edu	37	11	8251751	8251751	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO1	4004	broad.mit.edu	37	11	8251819	8251819	+	Intron	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO1	4004	broad.mit.edu	37	11	8251819	8251819	+	Intron	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97816093	97816093	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97816093	97816093	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090337	238090337	+	RNA	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090337	238090337	+	RNA	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133050	100133050	broad.mit.edu	37	5	99715244	99715244	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133050	100133050	broad.mit.edu	37	5	99715244	99715244	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45625388	45625388	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45625388	45625388	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106824967	106824967	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106824967	106824967	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656843	94656843	+	5'Flank	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656843	94656843	+	5'Flank	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284441	284441	broad.mit.edu	37	19	20369202	20369202	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284441	284441	broad.mit.edu	37	19	20369202	20369202	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5073760	5073760	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5073760	5073760	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68583098	68583098	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68583098	68583098	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645332	645332	broad.mit.edu	37	11	67559743	67559743	+	3'UTR	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645332	645332	broad.mit.edu	37	11	67559743	67559743	+	3'UTR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50368299	50368299	+	5'Flank	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50368299	50368299	+	5'Flank	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813649	75813649	+	3'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813649	75813649	+	3'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66148208	66148208	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66148208	66148208	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809309	91809309	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22786508	22786508	+	RNA	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22786508	22786508	+	RNA	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48303939	48303939	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48303941	48303941	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP2	83752	broad.mit.edu	37	16	48303941	48303941	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160961338	160961338	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161005990	161005990	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161056025	161056025	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160961338	160961338	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161005990	161005990	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161056025	161056025	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1477512	1477512	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT1	79888	broad.mit.edu	37	5	1477512	1477512	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR3	79948	broad.mit.edu	37	19	814479	814479	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR3	79948	broad.mit.edu	37	19	814479	814479	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771388	99771388	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771388	99771388	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN3	79414	broad.mit.edu	37	19	36430769	36430769	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN3	79414	broad.mit.edu	37	19	36430769	36430769	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356354	42356354	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356354	42356354	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283979	141283979	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141571477	141571477	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141665515	141665515	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283979	141283979	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141665515	141665515	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57603412	57603412	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57603412	57603412	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68190900	68190900	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68190900	68190900	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371973	76371973	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371973	76371973	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B2	147172	broad.mit.edu	37	17	28958781	28958781	+	5'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B2	147172	broad.mit.edu	37	17	28958781	28958781	+	5'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71305143	71305143	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71305143	71305143	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4	64101	broad.mit.edu	37	7	127670602	127670602	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4	64101	broad.mit.edu	37	7	127670602	127670602	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70225869	70225869	+	5'UTR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70225869	70225869	+	5'UTR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40761586	40761586	+	3'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68857483	68857483	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68857483	68857483	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTOMT	220074	broad.mit.edu	37	11	71821340	71821340	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTOMT	220074	broad.mit.edu	37	11	71821340	71821340	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1904695	1904695	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1904695	1904695	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143866996	143866996	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143866996	143866996	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL6	57151	broad.mit.edu	37	17	34264778	34264778	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39790502	39790502	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145160669	145160669	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145160669	145160669	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303881	151303881	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303881	151303881	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141293069	141293069	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141293069	141293069	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77789402	77789402	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21204043	21204043	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136935100	136935100	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42111877	42111877	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186944314	186944314	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255563	18255563	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255563	18255563	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82036276	82036276	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82036276	82036276	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3778978	3778978	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3778978	3778978	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138650238	138650238	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138650238	138650238	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54529085	54529085	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL2	4153	broad.mit.edu	37	10	54529085	54529085	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84103628	84103628	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84103628	84103628	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85431433	85431433	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85431433	85431433	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6377620	6377620	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6377620	6377620	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94245197	94245197	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86267846	86267846	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86267846	86267846	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168840409	168840409	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150834277	150834277	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150834277	150834277	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151101922	151101922	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131937143	131937143	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131937143	131937143	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD2A	84879	broad.mit.edu	37	1	40428573	40428573	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIDN	90007	broad.mit.edu	37	19	1254919	1254919	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIDN	90007	broad.mit.edu	37	19	1254919	1254919	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR300	100126297	broad.mit.edu	37	14	101507317	101507317	+	5'Flank	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54240116	54240116	+	RNA	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54240116	54240116	+	RNA	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56294052	56294052	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56294052	56294052	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89209242	89209242	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89339218	89339218	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89339218	89339218	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132335487	132335487	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132335487	132335487	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102668252	102668252	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102668256	102668256	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102668252	102668252	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102668256	102668256	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5011855	5011855	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5011855	5011855	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102713485	102713485	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102713485	102713485	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44639526	44639526	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44639526	44639526	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL3	25843	broad.mit.edu	37	2	198398651	198398651	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL3	25843	broad.mit.edu	37	2	198398651	198398651	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS1	4337	broad.mit.edu	37	6	39876768	39876768	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS1	4337	broad.mit.edu	37	6	39876768	39876768	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62929426	62929426	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62929426	62929426	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108819263	108819263	+	Splice_Site	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30433103	30433103	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30435814	30435814	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30433103	30433103	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30435814	30435814	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL44	65080	broad.mit.edu	37	2	224831531	224831531	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL44	65080	broad.mit.edu	37	2	224831531	224831531	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL47	57129	broad.mit.edu	37	3	179310384	179310384	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL47	57129	broad.mit.edu	37	3	179310384	179310384	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754875	72754875	+	3'UTR	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754875	72754875	+	3'UTR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31727788	31727788	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31727788	31727788	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB2	22921	broad.mit.edu	37	10	23409753	23409753	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB2	22921	broad.mit.edu	37	10	23409753	23409753	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSX2	4488	broad.mit.edu	37	5	174152132	174152132	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1M	4499	broad.mit.edu	37	16	56667828	56667828	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1M	4499	broad.mit.edu	37	16	56667828	56667828	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7900289	7900289	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7900289	7900289	+	3'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30066847	30066847	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	30066847	30066847	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8962054	8962054	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9010879	9010879	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9024556	9024556	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065905	9065905	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071876	9071876	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8962054	8962054	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9010879	9010879	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9012894	9012894	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9024556	9024556	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9063110	9063110	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065905	9065905	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071876	9071876	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100677932	100677932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100677932	100677932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113459434	113459434	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42344627	42344627	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48441613	48441613	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48441613	48441613	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10397739	10397739	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408678	10408678	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10397739	10397739	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408678	10408678	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10550789	10550789	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10550789	10550789	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10299838	10299838	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303967	10303967	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10299838	10299838	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303967	10303967	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18023924	18023924	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18023924	18023924	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27448150	27448150	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192257838	192257838	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192257838	192257838	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128341985	128341985	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128341985	128341985	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12626139	12626139	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12626139	12626139	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164049999	164049999	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164049999	164049999	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101997748	101997748	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101997748	101997748	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78392030	78392030	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78392030	78392030	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15696791	15696791	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204009250	204009250	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204009250	204009250	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145439705	145439707	+	Intron	DEL	AAA	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145439705	145439707	+	Intron	DEL	AAA	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16892902	16892902	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1B	654816	broad.mit.edu	37	7	72645953	72645953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1B	654816	broad.mit.edu	37	7	72645953	72645953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183889670	183889670	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCL	4691	broad.mit.edu	37	2	232326670	232326670	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33337075	33337075	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA6	23054	broad.mit.edu	37	20	33337075	33337075	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19638158	19638159	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA13	51079	broad.mit.edu	37	19	19638158	19638159	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207003266	207003266	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	207003266	207003266	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152581900	152581900	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152581900	152581900	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD9	4739	broad.mit.edu	37	6	11185382	11185383	+	3'UTR	INS	-	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29886353	29886353	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29886353	29886353	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20969045	20969045	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21592424	21592424	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20969045	20969045	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21592424	21592424	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170910	45170910	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170910	45170910	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73566266	73566266	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204950910	204950910	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204970313	204970313	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204950910	204950910	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204951177	204951177	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204970313	204970313	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50090455	50090455	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50090455	50090455	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB2	4791	broad.mit.edu	37	10	104155597	104155597	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768830	63768830	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768830	63768830	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42679486	42679486	+	Frame_Shift_Del	DEL	A	-	-	rs150528581	byFrequency	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN2	57555	broad.mit.edu	37	17	7318563	7318563	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54304481	54304481	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54304481	54304481	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247607348	247607348	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247607348	247607348	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56459349	56459349	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56459349	56459349	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101093867	101093867	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101093867	101093867	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70514295	70514295	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NONO	4841	broad.mit.edu	37	X	70514295	70514295	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP2	4839	broad.mit.edu	37	12	6671110	6671110	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117715825	117715825	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117723830	117723830	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72897911	72897911	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPFFR2	10886	broad.mit.edu	37	4	72897911	72897911	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34867133	34867133	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34867133	34867133	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329281	24329281	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329281	24329281	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115355602	115355602	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115423469	115423469	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115355602	115355602	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	31498156	31498156	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24134757	24134757	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24146308	24146308	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24134757	24134757	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24146308	24146308	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79181428	79181429	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79181428	79181429	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88472600	88472600	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88472600	88472600	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT16	131870	broad.mit.edu	37	3	131101022	131101022	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT16	131870	broad.mit.edu	37	3	131101022	131101022	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163317609	163317609	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163317609	163317609	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37341209	37341209	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37341209	37341209	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131720382	131720382	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131720382	131720382	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101615453	101615453	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101615453	101615453	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28230275	28230275	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28230275	28230275	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODAM	54959	broad.mit.edu	37	4	71062455	71062455	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	124097430	124097430	+	Missense_Mutation	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	124097430	124097430	+	Missense_Mutation	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183600672	183600672	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183651436	183651436	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183664485	183664485	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183651436	183651436	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183664485	183664485	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9791931	9791931	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9791931	9791931	+	5'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161954549	161954549	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034677	58034677	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034677	58034677	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692109	20692109	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692109	20692109	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C4	138804	broad.mit.edu	37	9	107288801	107288801	+	Silent	SNP	C	T	T	rs146391633		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C4	138804	broad.mit.edu	37	9	107288801	107288801	+	Silent	SNP	C	T	T	rs146391633		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614966	247614966	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614966	247614966	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695852	247695852	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695852	247695852	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248263249	248263249	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W1	26692	broad.mit.edu	37	6	29012092	29012092	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W1	26692	broad.mit.edu	37	6	29012092	29012092	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339717	55339717	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339717	55339717	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515976	51515976	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515976	51515976	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56232386	56232386	+	5'Flank	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56232386	56232386	+	5'Flank	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344411	20344411	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344411	20344411	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4842710	4842710	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F2	119694	broad.mit.edu	37	11	4842710	4842710	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4389468	4389468	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4389468	4389468	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761670	55761670	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761670	55761670	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344907	56344907	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344907	56344907	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258462	56258462	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258462	56258462	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185244	56185244	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185244	56185244	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816036	6816036	+	Missense_Mutation	SNP	C	A	A	rs146813493	byFrequency	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816036	6816036	+	Missense_Mutation	SNP	C	A	A	rs146813493	byFrequency	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C74	254783	broad.mit.edu	37	12	55641435	55641435	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C74	254783	broad.mit.edu	37	12	55641435	55641435	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624331	123624331	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6X1	390260	broad.mit.edu	37	11	123624331	123624331	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B4	283162	broad.mit.edu	37	11	124294273	124294273	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B4	283162	broad.mit.edu	37	11	124294273	124294273	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128508	56128508	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128508	56128508	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57947485	57947485	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57947485	57947485	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21742139	21742139	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21742139	21742139	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29597135	29597135	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29597135	29597135	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7716867	7716867	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7716867	7716867	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVGP1	5016	broad.mit.edu	37	1	111970272	111970272	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVGP1	5016	broad.mit.edu	37	1	111970272	111970272	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXT	5020	broad.mit.edu	37	20	3052311	3052311	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXT	5020	broad.mit.edu	37	20	3052311	3052311	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX5	5026	broad.mit.edu	37	17	3583113	3583113	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72946375	72946375	+	3'UTR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY2	5029	broad.mit.edu	37	11	72946375	72946375	+	3'UTR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147345742	147345742	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147345742	147345742	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163149063	163149063	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163149063	163149063	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3891140	3891140	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3869922	3869922	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3891140	3891140	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176659372	176659372	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176709330	176709330	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176734888	176734888	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176563917	176563917	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176659372	176659372	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176709330	176709330	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176734888	176734888	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69672372	69672372	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR5	54852	broad.mit.edu	37	15	69672372	69672372	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206418005	206418005	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206418005	206418005	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145058149	145058149	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145058149	145058149	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44585045	44585045	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150780277	150780277	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150780277	150780277	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21687763	21687763	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21689023	21689023	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21687763	21687763	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21689023	21689023	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102540935	102540935	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102540935	102540935	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100809550	100809550	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91238474	91238474	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140242852	140242852	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140181953	140181953	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140181953	140181953	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603156	140603156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603156	140603156	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502030	140502030	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140558219	140558219	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140558219	140558219	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140810274	140810274	+	5'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140812210	140812210	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140810274	140810274	+	5'UTR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140812210	140812210	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140731096	140731096	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140731096	140731096	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB7	56099	broad.mit.edu	37	5	140799011	140799011	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB7	56099	broad.mit.edu	37	5	140799011	140799011	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82879556	82879556	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82879556	82879556	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71413833	71413833	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78686489	78686489	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66631078	66631078	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165802041	165802041	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165895690	165895690	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165956877	165956877	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165802041	165802041	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165895690	165895690	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165956877	165956877	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32209435	32209435	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32209435	32209435	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66833364	66833364	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66833364	66833364	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144919118	144919118	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144919118	144919118	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6G	5148	broad.mit.edu	37	17	79618748	79618748	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6G	5148	broad.mit.edu	37	17	79618748	79618748	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55131116	55131116	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55131116	55131116	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39904046	39904046	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39904046	39904046	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433097	73433098	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433097	73433098	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA3	643834	broad.mit.edu	37	11	60978995	60978995	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230468556	230468556	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230468556	230468556	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153303330	153303330	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153303330	153303330	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM1	5236	broad.mit.edu	37	1	64114124	64114124	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM1	5236	broad.mit.edu	37	1	64114124	64114124	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF15	23338	broad.mit.edu	37	5	133909338	133909338	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF15	23338	broad.mit.edu	37	5	133909338	133909338	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26881652	26881652	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26881652	26881652	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18491482	18491482	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18544314	18544314	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18491482	18491482	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39535093	39535093	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39535093	39535093	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8790037	8790037	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8790037	8790037	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130834576	130834576	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130834576	130834576	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22175745	22175745	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22175745	22175745	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20416375	20416375	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20416375	20416375	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8709901	8709901	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862495	8862495	+	Nonstop_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8709901	8709901	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8862495	8862495	+	Nonstop_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40582480	40582480	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9360852	9360852	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9459462	9459462	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9360852	9360852	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9459462	9459462	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950213	198950213	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950213	198950213	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144998070	144998070	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144998070	144998070	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131936515	131936515	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951656	131951656	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131936515	131936515	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951656	131951656	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43921510	43921510	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1P	440456	broad.mit.edu	37	17	62811393	62811393	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1P	440456	broad.mit.edu	37	17	62811393	62811393	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO1	51177	broad.mit.edu	37	1	150129460	150129460	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO1	51177	broad.mit.edu	37	1	150129460	150129460	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68621100	68621100	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128804445	128804445	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128804445	128804445	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12024852	12024852	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12024852	12024852	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94613897	94613897	+	Silent	SNP	C	A	A	rs146510015		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94613897	94613897	+	Silent	SNP	C	A	A	rs146510015		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72159707	72159707	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160237602	160237602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160237602	160237602	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNN	5411	broad.mit.edu	37	14	39645226	39645226	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNN	5411	broad.mit.edu	37	14	39645226	39645226	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52184965	52184966	+	Intron	DNP	CC	AT	AT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52184965	52184966	+	Intron	DNP	CC	AT	AT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130878106	130878106	+	5'UTR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287591	16287591	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56989596	56989596	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2B	8613	broad.mit.edu	37	1	56989596	56989596	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202406861	202406861	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202406948	202406948	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202406861	202406861	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202406948	202406948	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	64006248	64006248	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	64006248	64006248	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP5C	5536	broad.mit.edu	37	19	46878954	46878954	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP5C	5536	broad.mit.edu	37	19	46878954	46878954	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42862738	42862738	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170020754	170020754	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	170020754	170020754	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48744305	48744305	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48775080	48775080	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48744305	48744305	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48775080	48775080	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179307987	179307987	+	Intron	DEL	T	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179307987	179307987	+	Intron	DEL	T	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35084585	35084585	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35084585	35084585	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126859188	126859188	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126859188	126859188	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459828	142459828	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459828	142459828	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139193210	139193210	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD2	84249	broad.mit.edu	37	5	139193210	139193210	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43380658	43380658	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43380658	43380658	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43243354	43243367	+	Intron	DEL	ACACACACATACAA	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43429742	43429742	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43433928	43433928	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43433928	43433928	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43453870	43453870	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770537	43770537	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43770537	43770537	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97278637	97278637	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97278637	97278637	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11595455	11595455	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11595455	11595455	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125145835	125145835	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125145835	125145835	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77266396	77266396	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77266396	77266396	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198700603	198700603	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198711621	198711621	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198711621	198711621	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55693445	55693445	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55693445	55693445	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157997861	157997861	+	Splice_Site	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157997861	157997861	+	Splice_Site	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161453	220161453	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220161453	220161453	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71054802	71054802	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71054802	71054802	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29618568	29618568	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29618568	29618568	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9333633	9333633	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9333633	9333633	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220330962	220330962	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD18	56852	broad.mit.edu	37	3	8932031	8932031	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD18	56852	broad.mit.edu	37	3	8932031	8932031	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALBP1	10928	broad.mit.edu	37	18	9513021	9513021	+	5'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALBP1	10928	broad.mit.edu	37	18	9513021	9513021	+	5'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGDS	5900	broad.mit.edu	37	9	135982745	135982745	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP17	64901	broad.mit.edu	37	5	170725662	170725662	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114762162	114762162	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114762162	114762162	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553693	113553693	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553693	113553693	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80497210	80497210	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5103997	5103997	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBAK	57786	broad.mit.edu	37	7	5103997	5103997	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47028850	47028850	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79896614	79896614	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM26	64062	broad.mit.edu	37	13	79896614	79896614	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145603198	145603198	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145603198	145603198	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36120654	36120654	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36120654	36120654	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50102346	50102346	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50102346	50102346	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139181188	139181188	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP2	5948	broad.mit.edu	37	3	139181188	139181188	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103137039	103137039	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103159716	103159716	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103160054	103160054	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103557493	103557493	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103137039	103137039	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103159716	103159716	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103557493	103557493	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43612222	43612222	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43612222	43612222	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	175957580	175957580	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	175957580	175957580	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101075826	101075826	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101075826	101075826	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22863618	22863618	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22863618	22863618	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN1	114822	broad.mit.edu	37	8	144460493	144460493	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RND2	8153	broad.mit.edu	37	17	41178142	41178142	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104319803	104319803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104319803	104319803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77623840	77623840	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77623840	77623840	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10468146	10468146	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	2002992	2002992	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	2002992	2002992	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93300537	93300537	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93300541	93300541	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93300537	93300537	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93300541	93300541	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	167143365	167143365	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78576461	78576461	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM2B	50484	broad.mit.edu	37	8	103237348	103237348	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114319740	114319740	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114319740	114319740	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122990163	122990164	+	Nonsense_Mutation	DNP	GA	AG	AG			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	122990163	122990164	+	Nonsense_Mutation	DNP	GA	AG	AG			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12939862	12939862	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12939862	12939862	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60072161	60072161	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60072161	60072161	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67733311	67733311	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX3	864	broad.mit.edu	37	1	25291042	25291042	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX3	864	broad.mit.edu	37	1	25291042	25291042	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937086	33937086	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937086	33937086	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165380405	165380405	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165380405	165380405	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38939385	38939385	+	Missense_Mutation	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38942547	38942547	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38939385	38939385	+	Missense_Mutation	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38942547	38942547	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34103125	34103125	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169650996	169650996	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169650996	169650996	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100598693	100598693	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100598693	100598693	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC4MOL	6307	broad.mit.edu	37	4	166258949	166258949	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC4MOL	6307	broad.mit.edu	37	4	166258949	166258949	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158787130	158787130	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158991564	158991564	+	5'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158787130	158787130	+	5'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38755298	38755298	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166866192	166866192	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1D	6339	broad.mit.edu	37	1	1221528	1221528	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1D	6339	broad.mit.edu	37	1	1221528	1221528	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144886067	144886067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144886067	144886067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43658696	43658696	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43658696	43658696	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35212536	35212536	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35212536	35212536	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4150218	4150218	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4247586	4247586	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4150218	4150218	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4247586	4247586	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71397871	71397871	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192711133	192711133	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDPR	8436	broad.mit.edu	37	2	192711133	192711133	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122631831	122631831	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122631831	122631831	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74707191	74707191	+	Silent	SNP	C	T	T	rs147975982		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74707191	74707191	+	Silent	SNP	C	T	T	rs147975982		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185341817	185341817	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185341817	185341817	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55865858	55865858	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55912411	55912411	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55912411	55912411	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT2	4735	broad.mit.edu	37	2	242283469	242283469	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT2	4735	broad.mit.edu	37	2	242283469	242283469	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94909642	94909642	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA11	256394	broad.mit.edu	37	14	94909642	94909642	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95029670	95029670	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95029670	95029670	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94931009	94931009	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94931156	94931156	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94931009	94931009	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94931156	94931156	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61570672	61570672	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61570672	61570672	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167164355	167164355	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167164355	167164355	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETMAR	6419	broad.mit.edu	37	3	4358118	4358118	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155929	67155929	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67155929	67155929	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84255729	84255729	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL3	6457	broad.mit.edu	37	15	84255729	84255729	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51169662	51169662	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51169662	51169662	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146247376	146247376	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146247376	146247376	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50378792	50378792	+	Intron	DEL	G	-	-	rs5915290	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117058369	117058369	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117058369	117058369	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918110	51918110	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918110	51918110	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72165754	72165754	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72165754	72165754	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38632089	38632089	+	Intron	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38632089	38632089	+	Intron	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIT1	27240	broad.mit.edu	37	9	35650214	35650214	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIT1	27240	broad.mit.edu	37	9	35650214	35650214	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164733862	164733862	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748367	164748367	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164733862	164733862	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46247980	46247980	+	Nonsense_Mutation	SNP	G	A	A	rs142272724		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46247980	46247980	+	Nonsense_Mutation	SNP	G	A	A	rs142272724		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160604515	160604515	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160604515	160604515	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127483407	127483407	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127483407	127483407	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1074609	1074609	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1074609	1074609	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6607201	6607201	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43217060	43217060	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43217060	43217060	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A2	10246	broad.mit.edu	37	6	25918584	25918584	+	Intron	SNP	G	T	T	rs115821474	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36677103	36677103	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36677103	36677103	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19674054	19674054	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19674054	19674054	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A11	284129	broad.mit.edu	37	17	78197143	78197143	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A11	284129	broad.mit.edu	37	17	78197143	78197143	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A3	7781	broad.mit.edu	37	2	27478154	27478154	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A3	7781	broad.mit.edu	37	2	27478154	27478154	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75681629	75681629	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51844610	51844610	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18918281	18918281	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A10	125206	broad.mit.edu	37	17	18918281	18918281	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110716458	110716458	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110716458	110716458	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28545983	28545984	+	Intron	DNP	CC	AT	AT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28545983	28545984	+	Intron	DNP	CC	AT	AT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216488	170216488	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170216488	170216488	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70527751	70527751	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70527751	70527751	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	482774	482774	+	Silent	SNP	G	A	A	rs143761751		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A3	6550	broad.mit.edu	37	5	482774	482774	+	Silent	SNP	G	A	A	rs143761751		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103095197	103095197	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21205248	21205248	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN11	91607	broad.mit.edu	37	17	33687261	33687261	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN11	91607	broad.mit.edu	37	17	33687261	33687261	+	Splice_Site	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093656	168093656	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093656	168093656	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47663809	47663809	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47663809	47663809	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2698038	2698038	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2698038	2698038	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70444584	70444584	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70444584	70444584	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130910224	130910224	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMTNL1	219537	broad.mit.edu	37	11	57310916	57310916	+	Intron	DEL	T	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-11	767589	broad.mit.edu	37	14	101433501	101433501	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-11	767589	broad.mit.edu	37	14	101433501	101433501	+	5'Flank	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-27	767608	broad.mit.edu	37	14	101454473	101454473	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-27	767608	broad.mit.edu	37	14	101454473	101454473	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25302273	25302273	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25330609	25330609	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25334167	25334167	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25330609	25330609	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25334167	25334167	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154728	25154728	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154728	25154728	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51449384	51449384	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664532	51664532	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51449384	51449384	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664532	51664532	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106865417	106865417	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106865417	106865417	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231102058	231102058	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231102058	231102058	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118539080	118539080	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118539080	118539080	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN1	10927	broad.mit.edu	37	9	91025681	91025681	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIN1	10927	broad.mit.edu	37	9	91025681	91025681	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147443647	147443647	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147443647	147443647	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55910533	55910533	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55910533	55910533	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234975853	234975853	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234975853	234975853	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612493	158612493	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158585087	158585087	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612493	158612493	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142757772	142757772	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP68	6730	broad.mit.edu	37	17	74041190	74041190	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2818263	2818263	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2818263	2818263	+	Splice_Site	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116774264	116774264	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116774264	116774264	+	Intron	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52550806	52550806	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52550806	52550806	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104044204	104044204	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104044204	104044204	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191841713	191841713	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT1	6772	broad.mit.edu	37	2	191841713	191841713	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU1	6780	broad.mit.edu	37	20	47751649	47751649	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU2	27067	broad.mit.edu	37	8	74515888	74515888	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU2	27067	broad.mit.edu	37	8	74515888	74515888	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74481407	74481407	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74481407	74481407	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4509121	4509121	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4509121	4509121	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120973837	120973837	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120973837	120973837	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147631360	147631360	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147680270	147680270	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147631360	147631360	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147680270	147680270	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67571122	67571122	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67571122	67571122	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70592733	70592733	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4025532	4025532	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4025532	4025532	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114820914	114820914	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114820914	114820914	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT11	23208	broad.mit.edu	37	1	155851156	155851156	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT11	23208	broad.mit.edu	37	1	155851156	155851156	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79679716	79679716	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79679716	79679716	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7437131	7437131	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7437131	7437131	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938808	132938808	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132938808	132938808	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123847057	123847057	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120774751	120774781	+	Frame_Shift_Del	DEL	TTATCCAAAGTTCTAACTTCATTATTCACAC	-	-	rs117420905	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150470105	150470105	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150470105	150470105	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26756481	26756481	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26756481	26756481	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17469948	17469948	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170873782	170873782	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170873782	170873782	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX21	30009	broad.mit.edu	37	17	45822284	45822285	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57212142	57212142	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF12	6938	broad.mit.edu	37	15	57212142	57212142	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF23	150921	broad.mit.edu	37	2	27372190	27372190	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152082789	152082789	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96128852	96128852	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL6	27004	broad.mit.edu	37	14	96128852	96128852	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65171048	65171049	+	Intron	INS	-	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX261	113419	broad.mit.edu	37	2	71216145	71216145	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAMP1	260341	broad.mit.edu	37	7	1654356	1654356	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAMP1	260341	broad.mit.edu	37	7	1654356	1654356	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50696861	50696861	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50696861	50696861	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93518469	93518469	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93518469	93518469	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133418347	133418347	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133418347	133418347	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177108	89177108	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177108	89177108	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2380910	2380910	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2380910	2380910	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169632587	169632587	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169632587	169632587	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79373964	79373964	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79373964	79373964	+	Missense_Mutation	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134882	128134882	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134882	128134882	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2796238	2796238	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2796238	2796238	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD1	55623	broad.mit.edu	37	16	20748250	20748250	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD1	55623	broad.mit.edu	37	16	20748250	20748250	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394019	164394019	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394019	164394019	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70353100	70353100	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70353100	70353100	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60598087	60598087	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60598087	60598087	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35718871	35718871	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35718871	35718871	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX3	30012	broad.mit.edu	37	5	170736451	170736451	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2597907	2597907	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2597907	2597907	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44770556	44770556	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44770556	44770556	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150B	284417	broad.mit.edu	37	19	55832247	55832247	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150B	284417	broad.mit.edu	37	19	55832247	55832247	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15425242	15425242	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15425242	15425242	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762209	130762209	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762209	130762209	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74300223	74300223	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74300223	74300223	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM57	55219	broad.mit.edu	37	1	25817874	25817874	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM57	55219	broad.mit.edu	37	1	25817874	25817874	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29924385	29924385	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM66	51669	broad.mit.edu	37	8	29924385	29924385	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMIGD2	126259	broad.mit.edu	37	19	4292588	4292588	+	3'UTR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154774606	154774606	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29757258	29757258	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29757258	29757258	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88589425	88589425	+	Nonstop_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93586770	93586770	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93586770	93586770	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175067547	175067547	+	Silent	SNP	C	G	G	rs143826266	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175067547	175067547	+	Silent	SNP	C	G	G	rs143826266	byFrequency;by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175328961	175328961	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175365895	175365895	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175328961	175328961	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175365895	175365895	+	Missense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32023635	32023635	+	Silent	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25674336	25674336	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25674336	25674336	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42695474	42695474	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42695474	42695474	+	Silent	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711406	113711406	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113711406	113711406	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52L3	89882	broad.mit.edu	37	9	6330811	6330811	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934906	10934906	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10952843	10952843	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970037	10970037	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934906	10934906	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10952843	10952843	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970037	10970037	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14461326	14461326	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14461326	14461326	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230672375	230672375	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230672375	230672375	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54953208	54953208	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54953208	54953208	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72948572	72948572	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72948572	72948572	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73399169	73399169	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73478056	73478056	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73399169	73399169	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73478056	73478056	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77376768	77376768	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77376768	77376768	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234873222	234873222	+	Intron	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116430678	116430678	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116631413	116631413	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116430678	116430678	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116631413	116631413	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135782334	135782334	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2114374	2114374	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2114374	2114374	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN32	10077	broad.mit.edu	37	11	2337896	2337896	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN32	10077	broad.mit.edu	37	11	2337896	2337896	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTD2	158427	broad.mit.edu	37	9	100364923	100364923	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43250288	43250288	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3447625	3447625	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3447625	3447625	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75113581	75113581	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75113581	75113581	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC22	55001	broad.mit.edu	37	1	55253539	55253539	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33037799	33037799	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30474942	30474942	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30474942	30474942	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179398197	179398197	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179572217	179572217	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179629388	179629388	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179642042	179642042	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179398197	179398197	+	Missense_Mutation	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179572217	179572217	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179629388	179629388	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179642042	179642042	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151534465	151534465	+	Intron	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151534972	151534972	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151534465	151534465	+	Intron	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUFT1	7286	broad.mit.edu	37	1	151534972	151534972	+	Intron	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37927787	37927787	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37927787	37927787	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68534382	68534382	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68534382	68534382	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404269	34404269	+	RNA	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404269	34404269	+	RNA	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74395027	74395027	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74395027	74395027	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109936051	109936051	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109936051	109936051	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10238755	10238755	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10238755	10238755	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL5	51377	broad.mit.edu	37	1	193029091	193029091	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5415529	5415529	+	Intron	SNP	A	T	T	rs115397988	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCN3	114131	broad.mit.edu	37	10	5415529	5415529	+	Intron	SNP	A	T	T	rs115397988	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234628348	234628348	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234628348	234628348	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69879862	69879862	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69879862	69879862	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535962	69535962	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69535962	69535962	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35988559	35988560	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35988559	35988560	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176306803	176306803	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176306803	176306803	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96256818	96256818	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96256818	96256818	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35606200	35606200	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35606200	35606200	+	Missense_Mutation	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780812	73780812	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780814	73780814	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780812	73780812	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNK	85451	broad.mit.edu	37	17	73780814	73780814	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18968170	18968170	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18968170	18968170	+	Silent	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158980311	158980311	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158980311	158980311	+	Missense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17552573	17552573	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17552573	17552573	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215802113	215802113	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215802113	215802113	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76691851	76691854	+	Intron	DEL	ACTT	-	-	rs145556474		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113699991	113699991	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113699991	113699991	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641790	57641790	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57641790	57641790	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23093759	23093759	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23093759	23093759	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445510	107445510	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15559063	15559063	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94968373	94968373	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18210892	18210893	+	IGR	DNP	CC	AA	AA			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48485699	48485699	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459108	51459108	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5269432	5269432	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55111720	55111720	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198229	55198229	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234629	55234629	+	IGR	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6067915	6067915	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6078749	6078749	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9628132	9628132	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410377	106410377	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	110072848	110072848	+	IGR	SNP	T	C	C	rs148931300	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129499480	129499480	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956605	25956605	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2869653	2869653	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31405314	31405314	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43072731	43072731	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55517293	55517293	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61626741	61626741	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68868324	68868324	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80746011	80746011	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9703905	9703905	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	51736523	51736523	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574058	56574058	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60849428	60849428	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924503	91924503	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103840849	103840849	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476349	19476349	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44010541	44010541	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	68080515	68080515	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384056	82384056	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384149	82384149	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100458	95100458	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95267280	95267280	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20087414	20087414	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20453915	20453915	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20467033	20467033	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20468136	20468136	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20845000	20845000	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21008983	21008983	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210204	27210204	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210299	27210299	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78675228	78675228	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82596951	82596951	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96991433	96991433	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17190074	17190074	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077771	32077771	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020658	33020658	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727208	34727208	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20487258	20487258	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	62932626	62932626	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70623328	70623328	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14630686	14630686	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14668568	14668568	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49371725	49371726	+	IGR	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19959580	19959580	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22882042	22882042	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51688867	51688867	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714946	51714946	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146523679	146523679	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149037632	149037632	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149047202	149047202	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149089844	149089844	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101489	149101489	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101702	149101702	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158507183	158507183	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160640122	160640122	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164312454	164312454	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166246760	166246760	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189222952	189222952	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192215981	192215981	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216967	192216967	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248513063	248513063	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91490349	91490349	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23565950	23565950	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31797652	31797652	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16871241	16871241	+	IGR	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	49609770	49609770	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537537	108537537	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132587640	132587640	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139655365	139655365	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	178042915	178042915	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737517	181737517	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559455	182559455	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212163746	212163746	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494423	234494423	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	50106240	50106240	+	IGR	SNP	T	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56977562	56977562	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81422486	81422486	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91925075	91925075	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11951310	11951310	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166409189	166409189	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183745212	183745212	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75406337	75406337	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90278952	90278952	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116964982	116964982	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519770	117519770	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166470897	166470897	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166586405	166586405	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182443789	182443789	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49099749	49099753	+	IGR	DEL	TCCGG	-	-	rs60947727		TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49121582	49121582	+	IGR	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63376533	63376533	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69653059	69653059	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70257097	70257097	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70284876	70284876	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73673828	73673828	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9389000	9389000	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110283904	110283904	+	IGR	DEL	T	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117115111	117115111	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305214	23305214	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42892632	42892632	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86180227	86180227	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97728752	97728752	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25272646	25272646	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52737874	52737875	+	IGR	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78497252	78497252	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511706	12511706	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12512262	12512262	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149019122	149019122	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152299510	152299510	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159025496	159025496	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53929985	53929985	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56431422	56431422	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268824	57268824	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57545617	57545617	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13600173	13600173	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33717171	33717171	+	IGR	SNP	C	A	A	rs73615911	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35979002	35979002	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156441	93156441	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156443	93156443	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102068074	102068074	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124281986	124281986	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27608668	27608668	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44118270	44118270	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68435919	68435919	+	IGR	SNP	C	G	G	rs74535801	by1000genomes	TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134740690	134740690	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25663994	25663994	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48022445	48022445	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85339653	85339653	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92644383	92644384	+	IGR	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445510	107445510	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	15559063	15559063	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	94968373	94968373	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18210892	18210893	+	IGR	DNP	CC	AA	AA			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48485699	48485699	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50205934	50205934	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459108	51459108	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55111720	55111720	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234629	55234629	+	IGR	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	60215352	60215352	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6067915	6067915	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6078749	6078749	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9628132	9628132	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106410377	106410377	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129499480	129499480	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956605	25956605	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2869653	2869653	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31405314	31405314	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43072731	43072731	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55517293	55517293	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61626741	61626741	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68868324	68868324	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9181436	9181436	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574058	56574058	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60849428	60849428	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924503	91924503	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103840849	103840849	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20146970	20146970	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44010541	44010541	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	74857410	74857410	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384056	82384056	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384149	82384149	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100458	95100458	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95267280	95267280	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20453915	20453915	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20468136	20468136	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20845000	20845000	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21008983	21008983	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210299	27210299	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82596951	82596951	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96991433	96991433	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17190074	17190074	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077771	32077771	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020658	33020658	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33740652	33740652	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727208	34727208	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20487258	20487258	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	62932626	62932626	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70623328	70623328	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14630686	14630686	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49371725	49371726	+	IGR	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19959580	19959580	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43844612	43844612	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51688867	51688867	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714946	51714946	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54161311	54161311	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55119611	55119611	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104470201	104470201	+	IGR	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121485400	121485400	+	IGR	SNP	G	C	C	rs7412645		TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12898670	12898670	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13414066	13414066	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146523679	146523679	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149037632	149037632	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149047202	149047202	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149089844	149089844	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101489	149101489	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158507183	158507183	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160640122	160640122	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164312454	164312454	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166246760	166246760	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189222952	189222952	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192215981	192215981	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216967	192216967	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248513063	248513063	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91490349	91490349	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913884	96913884	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23565950	23565950	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29930953	29930953	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114657	11114657	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24473963	24473963	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31797652	31797652	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16364872	16364872	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537537	108537537	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132587640	132587640	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139655365	139655365	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	178042915	178042915	+	IGR	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737517	181737517	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182559455	182559455	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052802	195052802	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212163746	212163746	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494423	234494423	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	50106240	50106240	+	IGR	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	56977562	56977562	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	63911590	63911590	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91925075	91925075	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11951310	11951310	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183745212	183745212	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195346530	195346530	+	IGR	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90278952	90278952	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116964982	116964982	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519770	117519770	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166470897	166470897	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182443789	182443789	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63376533	63376533	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69653059	69653059	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70000436	70000436	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70284876	70284876	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73673828	73673828	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9389000	9389000	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110283904	110283904	+	IGR	DEL	T	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117115111	117115111	+	IGR	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305214	23305214	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28927568	28927568	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	42892632	42892632	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86180227	86180227	+	IGR	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97728752	97728752	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	15944727	15944727	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25272646	25272646	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52737874	52737875	+	IGR	DNP	GG	TT	TT			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66804812	66804812	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78497252	78497252	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12511706	12511706	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12512262	12512262	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149019122	149019122	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152299510	152299510	+	IGR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159025496	159025496	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53929985	53929985	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216529	57216529	+	IGR	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268824	57268824	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57545617	57545617	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63031046	63031046	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13600173	13600173	+	IGR	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33717171	33717171	+	IGR	SNP	C	A	A	rs73615911	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156441	93156441	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93156443	93156443	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	102068074	102068074	+	IGR	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	124281986	124281986	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27608668	27608668	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44118270	44118270	+	IGR	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68435919	68435919	+	IGR	SNP	C	G	G	rs74535801	by1000genomes	TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134740690	134740690	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25663994	25663994	+	IGR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85339653	85339653	+	IGR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101190255	101190255	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101190255	101190255	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82785999	82785999	+	Silent	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48238559	48238559	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48238559	48238559	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87017756	87017756	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87017756	87017756	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37000953	37000953	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37000953	37000953	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79959803	79959803	+	Intron	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122720196	122720196	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122720196	122720196	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22166855	22166855	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22166855	22166855	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49842570	49842570	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAPAL	23063	broad.mit.edu	37	10	88220147	88220147	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAPAL	23063	broad.mit.edu	37	10	88220147	88220147	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27216299	27216299	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH5P	375690	broad.mit.edu	37	9	15952	15952	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30093072	30093072	+	RNA	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20137489	20137489	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20137489	20137489	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241901853	241901853	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241901853	241901853	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37379352	37379352	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37379352	37379352	+	5'Flank	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR81	124997	broad.mit.edu	37	17	1640949	1640949	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR81	124997	broad.mit.edu	37	17	1640949	1640949	+	Silent	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66425982	66425982	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5270433	5270433	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI2	26100	broad.mit.edu	37	7	5270433	5270433	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49373354	49373354	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49373354	49373354	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32439105	32439105	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32439105	32439105	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099691	168099691	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099691	168099691	+	Missense_Mutation	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21349293	21349293	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21349293	21349293	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228386	17228386	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228386	17228386	+	Silent	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX2	51087	broad.mit.edu	37	17	7193314	7193314	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YBX2	51087	broad.mit.edu	37	17	7193314	7193314	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56195375	56195375	+	5'UTR	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB47	92999	broad.mit.edu	37	3	42703101	42703101	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB47	92999	broad.mit.edu	37	3	42703101	42703101	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB49	166793	broad.mit.edu	37	4	4314883	4314883	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB49	166793	broad.mit.edu	37	4	4314883	4314883	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND1	79752	broad.mit.edu	37	8	82615028	82615028	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND1	79752	broad.mit.edu	37	8	82615028	82615028	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766283	77766283	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5290717	5290717	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5290717	5290717	+	3'UTR	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP41	286128	broad.mit.edu	37	8	144332252	144332252	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP41	286128	broad.mit.edu	37	8	144332252	144332252	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50721311	50721311	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36884449	36884449	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF114	163071	broad.mit.edu	37	19	48790040	48790040	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF114	163071	broad.mit.edu	37	19	48790040	48790040	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58579298	58579298	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58579298	58579298	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22193450	22193450	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482343	71482343	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482343	71482343	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22235505	22235505	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22235505	22235505	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF264	9422	broad.mit.edu	37	19	57705360	57705360	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF264	9422	broad.mit.edu	37	19	57705360	57705360	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53311270	53311270	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53311270	53311270	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54072435	54072435	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54072435	54072435	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44587938	44587938	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF335	63925	broad.mit.edu	37	20	44587938	44587938	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53611537	53611537	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53611537	53611537	+	3'UTR	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49672282	49672282	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49672282	49672282	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53352244	53352244	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53352244	53352244	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74154334	74154334	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF516	9658	broad.mit.edu	37	18	74154334	74154334	+	Missense_Mutation	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF630	57232	broad.mit.edu	37	X	47927585	47927585	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53686317	53686317	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53686317	53686317	+	Intron	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57529052	57529052	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57529052	57529052	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541382	40541382	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40541382	40541382	+	Missense_Mutation	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175089	57175089	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175250	57175250	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175089	57175089	+	Missense_Mutation	SNP	T	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175250	57175250	+	Silent	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20191165	20191165	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20191165	20191165	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939191	22939191	+	Intron	SNP	G	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21212978	21212978	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21212981	21212981	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21212978	21212978	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21212981	21212981	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78047770	78047770	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78047770	78047770	+	Missense_Mutation	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20636561	20636561	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76072944	76072944	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21854852	21854852	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5320526	5320526	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5416235	5416235	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25032958	25032958	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15883106	15883106	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22784067	22784067	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23171170	23171170	+	5'Flank	SNP	A	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159375708	159375708	+	Intron	SNP	G	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165678714	165678714	+	RNA	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078204	90078204	+	RNA	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122223	90122223	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90248789	90248789	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	42982786	42982786	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374339	95374339	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33970060	33970060	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180110426	180110426	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170372	24170372	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008600	142008600	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111590	142111591	+	Intron	DNP	GT	TG	TG			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73163739	73163739	+	5'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43709800	43709800	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	944	944	+	5'Flank	SNP	T	C	C			TCGA-44-4112-01A-01D-1458-08	TCGA-44-4112-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23008187	23008187	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20636561	20636561	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76072944	76072944	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21854852	21854852	+	Missense_Mutation	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5416235	5416235	+	Intron	SNP	A	C	C			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	70268239	70268239	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18304140	18304140	+	5'Flank	SNP	T	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15871532	15871532	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22784067	22784067	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22803256	22803256	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23171170	23171170	+	5'Flank	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165678714	165678714	+	RNA	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89378330	89378330	+	Intron	SNP	C	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078204	90078204	+	RNA	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90121620	90121620	+	Intron	SNP	A	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122223	90122223	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90248789	90248789	+	Intron	SNP	C	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	42982786	42982786	+	Silent	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374339	95374339	+	RNA	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12794524	12794524	+	Intron	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180110426	180110426	+	5'Flank	SNP	G	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170372	24170372	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008600	142008600	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142111590	142111591	+	Intron	DNP	GT	TG	TG			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73163739	73163739	+	5'UTR	SNP	A	T	T			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43709800	43709800	+	Intron	SNP	C	A	A			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78937970	78937970	+	Missense_Mutation	SNP	T	G	G			TCGA-44-4112-01A-01D-1105-08	TCGA-44-4112-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
