Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1BG	1	broad.mit.edu	37	19	58858216	58858216	+	3'UTR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66899349	66899349	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66933233	66933233	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66933233	66933233	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16177395	16177397	+	In_Frame_Del	DEL	AGA	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16177395	16177397	+	In_Frame_Del	DEL	AGA	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95696788	95696788	+	Intron	SNP	G	C	C	rs144410539	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95696788	95696788	+	Intron	SNP	G	C	C	rs144410539	by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	40013068	40013068	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31438825	31438825	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF2	80221	broad.mit.edu	37	17	48543288	48543288	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF2	80221	broad.mit.edu	37	17	48543288	48543288	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81648824	81648824	+	3'UTR	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106781013	106781013	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106781013	106781013	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805712	106805712	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24249672	24249672	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77356177	77356177	+	Intron	SNP	C	T	T	rs138751112	by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777292	43777292	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43777292	43777292	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46641940	46641940	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116059242	116059242	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148068908	148068908	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50307597	50307597	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50307597	50307597	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPS	8540	broad.mit.edu	37	2	178402821	178402821	+	Silent	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62298118	62298118	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106967651	106967651	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109814589	109814589	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMN1	196394	broad.mit.edu	37	12	31868348	31868348	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112048030	112048030	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101462075	101462075	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101462075	101462075	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201469469	201469469	+	Silent	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12B	653437	broad.mit.edu	37	2	241621963	241621963	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235359312	235359312	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235359312	235359312	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASGR1	432	broad.mit.edu	37	17	7081933	7081933	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216214388	216214388	+	3'UTR	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51096752	51096752	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATMIN	23300	broad.mit.edu	37	16	81069732	81069732	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113505180	113505180	+	Silent	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113505180	113505180	+	Silent	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52549430	52549430	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52549430	52549430	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B2M	567	broad.mit.edu	37	15	45003662	45003662	+	5'Flank	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B2M	567	broad.mit.edu	37	15	45003662	45003662	+	5'Flank	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11085601	11085601	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039045	11039045	+	3'UTR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	56999683	56999683	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	56999683	56999683	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13579271	13579271	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf10	11067	broad.mit.edu	37	10	45472741	45472741	+	3'UTR	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76227233	76227233	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76227233	76227233	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91691111	91691111	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91691111	91691111	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76449108	76449108	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76449108	76449108	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf127	148345	broad.mit.edu	37	1	11013907	11013907	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57219538	57219538	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55175634	55175634	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55175634	55175634	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684221	34684221	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf111	51526	broad.mit.edu	37	20	42831602	42831602	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf111	51526	broad.mit.edu	37	20	42831602	42831602	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf11	54994	broad.mit.edu	37	20	61575189	61575189	+	Intron	DEL	T	-	-	rs67614670		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24950657	24950657	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf63	59271	broad.mit.edu	37	21	33830052	33830052	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf63	59271	broad.mit.edu	37	21	33830052	33830052	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf33	339669	broad.mit.edu	37	22	37387544	37387544	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf33	339669	broad.mit.edu	37	22	37387544	37387544	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6707345	6707345	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37170015	37170015	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37170015	37170015	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39612310	39612310	+	3'UTR	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39612310	39612310	+	3'UTR	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf86	389649	broad.mit.edu	37	8	38385739	38385739	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35042966	35042966	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf131	138724	broad.mit.edu	37	9	35042966	35042966	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13365804	13365804	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13365804	13365804	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65014202	65014202	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM4	199731	broad.mit.edu	37	19	44131254	44131256	+	Intron	DEL	AGG	-	-	rs145326531	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17551851	17551851	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17551851	17551851	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42702827	42702827	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42702827	42702827	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASK	8573	broad.mit.edu	37	X	41535065	41535065	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN1	869	broad.mit.edu	37	16	49314745	49314745	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219869208	219869208	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77246898	77246898	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77247123	77247123	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77247123	77247123	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3678010	3678010	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180372586	180372586	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180372586	180372586	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64092698	64092698	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64092698	64092698	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC94	55702	broad.mit.edu	37	19	4262230	4262230	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNY	219771	broad.mit.edu	37	10	35841995	35841995	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR8	1237	broad.mit.edu	37	3	39374435	39374435	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072821	17072821	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD74	972	broad.mit.edu	37	5	149792008	149792008	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDAN1	146059	broad.mit.edu	37	15	43025477	43025477	+	Intron	DEL	T	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881693	26881693	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881693	26881693	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971057	21971058	+	Frame_Shift_Ins	INS	-	A	A	rs104894094		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104061956	104061956	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104061956	104061956	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPN	55839	broad.mit.edu	37	16	81050942	81050942	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49048414	49048414	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49048414	49048414	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP57	9702	broad.mit.edu	37	11	95546154	95546154	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP57	9702	broad.mit.edu	37	11	95546154	95546154	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55806422	55806422	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55806422	55806422	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57731825	57731825	+	Intron	SNP	G	T	T	rs112942729		TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126676372	126676372	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133447118	133447118	+	Intron	DEL	A	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61981432	61981432	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEC	63924	broad.mit.edu	37	3	9940471	9940471	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87045236	87045236	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87045236	87045236	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11884531	11884531	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11884531	11884531	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC16A	23274	broad.mit.edu	37	16	11062910	11062910	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18B	497190	broad.mit.edu	37	16	74443829	74443829	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122849279	122849279	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201719419	201719419	+	Splice_Site	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK1	1195	broad.mit.edu	37	2	201719419	201719419	+	Splice_Site	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	139894884	139894884	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62412103	62412103	+	3'UTR	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK1	51727	broad.mit.edu	37	1	47840725	47840725	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK1	51727	broad.mit.edu	37	1	47840725	47840725	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79054629	79054629	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103364245	103364245	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491969	103491969	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103364245	103364245	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491969	103491969	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189912863	189912863	+	Intron	DEL	T	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD6	170622	broad.mit.edu	37	13	76104110	76104110	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148552244	148552244	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148552244	148552244	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211518856	211518856	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211518856	211518856	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125639700	125639700	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSE1L	1434	broad.mit.edu	37	20	47712883	47712883	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113256703	113256703	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126683170	126683170	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSPL2	51496	broad.mit.edu	37	15	44806943	44806943	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSPL2	51496	broad.mit.edu	37	15	44806943	44806943	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99434067	99434067	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F8	11283	broad.mit.edu	37	19	15732950	15732950	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45429903	45429903	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX2	440097	broad.mit.edu	37	12	45429903	45429903	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766598	27766598	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L2	347442	broad.mit.edu	37	X	27766598	27766598	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326882	53326882	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326882	53326882	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155015885	155015885	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155015885	155015885	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61869884	61869884	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61525430	61525430	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69715196	69715196	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69715196	69715196	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41222861	41222861	+	Silent	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72295931	72295931	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72295931	72295931	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10244836	10244836	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10244836	10244836	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK4	55715	broad.mit.edu	37	16	57509470	57509470	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113286252	113286252	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7577931	7577931	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBAG9	9166	broad.mit.edu	37	8	110576697	110576697	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25766150	25766150	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131646712	131646712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131646712	131646712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP1	2202	broad.mit.edu	37	2	56102263	56102263	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38406296	38406296	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38406296	38406296	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EID3	493861	broad.mit.edu	37	12	104698247	104698247	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99993096	99993102	+	Splice_Site	DEL	TGAGGTA	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99993096	99993102	+	Splice_Site	DEL	TGAGGTA	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71497370	71497370	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71497370	71497370	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220156531	220156531	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220170591	220170591	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212589971	212589971	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212589971	212589971	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP27	121506	broad.mit.edu	37	12	15091227	15091227	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP27	121506	broad.mit.edu	37	12	15091227	15091227	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108380461	108380461	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108380461	108380461	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170627094	170627094	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM184A	79632	broad.mit.edu	37	6	119345909	119345909	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM184A	79632	broad.mit.edu	37	6	119345909	119345909	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM43A	131583	broad.mit.edu	37	3	194407563	194407563	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962140	34962140	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962140	34962140	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A2	642265	broad.mit.edu	37	9	39361117	39361117	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89801887	89801887	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89801887	89801887	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45606340	45606340	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127599169	127599169	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127599169	127599169	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147820885	147820885	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO46	23403	broad.mit.edu	37	19	46216187	46216187	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718500	157718500	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718500	157718500	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159779751	159779751	+	Intron	DEL	C	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FES	2242	broad.mit.edu	37	15	91438584	91438584	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186358967	186358967	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186358967	186358967	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102670571	102670571	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102670571	102670571	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF9	2254	broad.mit.edu	37	13	22255205	22255205	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF9	2254	broad.mit.edu	37	13	22255205	22255205	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153593044	153593044	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58156414	58156414	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153485166	153485166	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171083381	171083381	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171083381	171083381	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216236618	216236618	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216236618	216236618	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2977850	2977850	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49217718	49217718	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUZ	80199	broad.mit.edu	37	19	50316081	50316081	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170224461	170224461	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170224461	170224461	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30769763	30769763	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30769763	30769763	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST4	79690	broad.mit.edu	37	7	99757602	99757602	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT11	63917	broad.mit.edu	37	7	151818708	151818708	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT11	63917	broad.mit.edu	37	7	151818708	151818708	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155143224	155143224	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GART	2618	broad.mit.edu	37	21	34889466	34889466	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L3	283431	broad.mit.edu	37	12	101012211	101012211	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89734359	89734359	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89734359	89734359	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38876616	38876616	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42064793	42064793	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPAT	8443	broad.mit.edu	37	1	231406870	231406870	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPAT	8443	broad.mit.edu	37	1	231406870	231406870	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA1	2800	broad.mit.edu	37	9	127693657	127693657	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA1	2800	broad.mit.edu	37	9	127693657	127693657	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLM1	51280	broad.mit.edu	37	9	88661457	88661457	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518680	93518680	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518680	93518680	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR120	338557	broad.mit.edu	37	10	95327092	95327092	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134896297	134896297	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37692771	37692771	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR152	390212	broad.mit.edu	37	11	67219321	67219321	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR152	390212	broad.mit.edu	37	11	67219321	67219321	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR39	2863	broad.mit.edu	37	2	133174758	133174758	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57689912	57689912	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66961498	66961498	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71701932	71701932	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71701932	71701932	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228334439	228334440	+	Intron	DNP	GG	TT	TT			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37284394	37284394	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELLS	3070	broad.mit.edu	37	10	96322517	96322517	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELLS	3070	broad.mit.edu	37	10	96322517	96322517	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65147069	65147069	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65147069	65147069	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64045267	64045267	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64045267	64045267	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHEX	3087	broad.mit.edu	37	10	94452138	94452138	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHEX	3087	broad.mit.edu	37	10	94452138	94452138	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHEX	3087	broad.mit.edu	37	10	94452163	94452163	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD2B	123346	broad.mit.edu	37	15	72972263	72972263	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3C	8352	broad.mit.edu	37	6	26044317	26044317	+	5'Flank	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71048495	71048495	+	5'UTR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMBS	3145	broad.mit.edu	37	11	118960268	118960268	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPC	3183	broad.mit.edu	37	14	21699132	21699132	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46628504	46628504	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL2	84263	broad.mit.edu	37	9	115171264	115171264	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA4	3308	broad.mit.edu	37	5	132388063	132388063	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135585185	135585185	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ID3	3399	broad.mit.edu	37	1	23885762	23885762	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ID3	3399	broad.mit.edu	37	1	23885762	23885762	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133807236	133807236	+	Intron	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104961308	104961308	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734751	39734751	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6	3569	broad.mit.edu	37	7	22768236	22768236	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPDH2	3615	broad.mit.edu	37	3	49064513	49064513	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59988888	59988888	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59988888	59988888	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95877661	95877661	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPP	3652	broad.mit.edu	37	1	46182455	46182455	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75914498	75914498	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75914498	75914498	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISCU	23479	broad.mit.edu	37	12	108957910	108957910	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31408683	31408683	+	Silent	SNP	C	T	T	rs150915570	byFrequency	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33632679	33632679	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR3	3710	broad.mit.edu	37	6	33632679	33632679	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIPL2	162073	broad.mit.edu	37	16	19126881	19126881	+	Silent	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNA1	11104	broad.mit.edu	37	6	149944429	149944429	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB2	8514	broad.mit.edu	37	1	6150575	6150575	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163253285	163253285	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163253285	163253285	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969302	118969302	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969302	118969302	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196303207	196303207	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196303207	196303207	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67338379	67338379	+	Silent	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0174	9798	broad.mit.edu	37	16	71949406	71949406	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15705448	15705448	+	Splice_Site	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138552664	138552664	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1920356	1920356	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC8A	55220	broad.mit.edu	37	1	205306641	205306641	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86311732	86311732	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86311732	86311732	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51581323	51581323	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51581323	51581323	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733114	152733114	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733114	152733114	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52967174	52967174	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52967174	52967174	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52647343	52647343	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52647343	52647343	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACTB	114294	broad.mit.edu	37	15	63418911	63418911	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6999367	6999367	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21513990	21513990	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21513990	21513990	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21557918	21557918	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21557918	21557918	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBXCOR1	390598	broad.mit.edu	37	15	68119495	68119495	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCK	3932	broad.mit.edu	37	1	32745899	32745899	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46732929	46732929	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHAL6A	160287	broad.mit.edu	37	11	18487467	18487467	+	Intron	SNP	G	A	A	rs112394064		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18456297	18456297	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18456297	18456297	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	35989306	35989306	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95549856	95549856	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75608822	75608822	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75608822	75608822	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG3	3980	broad.mit.edu	37	17	33329065	33329065	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54800125	54800125	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54800125	54800125	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7B	64130	broad.mit.edu	37	19	49619729	49619729	+	Frame_Shift_Del	DEL	G	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561527	15561527	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238090207	238090207	+	RNA	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285033	285033	broad.mit.edu	37	2	96906022	96906022	+	5'UTR	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82061874	82061874	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82061874	82061874	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100179736	100179736	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100179736	100179736	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170148767	170148767	+	Silent	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68115636	68115636	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136580	40136580	+	Silent	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74621379	74621379	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74621379	74621379	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP3	4054	broad.mit.edu	37	11	65318931	65318931	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25004819	25004819	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25004819	25004819	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56862931	56862931	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56862931	56862931	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20112537	20112537	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20112537	20112537	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	117944871	117944871	+	Silent	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	117944871	117944871	+	Silent	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANF	7873	broad.mit.edu	37	3	51425216	51425216	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49642948	49642948	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119735488	119735488	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN3	4148	broad.mit.edu	37	2	20202890	20202890	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED1	5469	broad.mit.edu	37	17	37564674	37564674	+	Missense_Mutation	SNP	G	A	A	rs138417070	by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112766150	112766150	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112766150	112766150	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37754801	37754802	+	Intron	INS	-	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR886	100126299	broad.mit.edu	37	5	135416296	135416296	+	RNA	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR886	100126299	broad.mit.edu	37	5	135416296	135416296	+	RNA	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151921089	151921089	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55531019	55531019	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28193194	28193194	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108776234	108776234	+	Silent	SNP	G	A	A	rs144305402		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108776234	108776234	+	Silent	SNP	G	A	A	rs144305402		TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC2	22880	broad.mit.edu	37	22	31332411	31332411	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC2	22880	broad.mit.edu	37	22	31332411	31332411	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41955403	41955403	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077532	19077532	+	Missense_Mutation	SNP	G	A	A	rs60756581	byFrequency;by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077532	19077532	+	Missense_Mutation	SNP	G	A	A	rs60756581	byFrequency;by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754901	72754901	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754901	72754901	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47709956	47709956	+	Silent	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47709956	47709956	+	Silent	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1DP	326343	broad.mit.edu	37	16	56678127	56678127	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA1	9112	broad.mit.edu	37	14	105916554	105916554	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11273754	11273754	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11273754	11273754	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135515666	135515666	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135515666	135515666	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77847609	77847609	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77847609	77847609	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10260909	10260909	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10450590	10450590	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10362503	10362503	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10362503	10362503	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36717704	36717704	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36717704	36717704	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27424663	27424663	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26462560	26462560	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52571636	52571636	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76871264	76871264	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128366435	128366435	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128366435	128366435	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24426112	24426112	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24426161	24426161	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24426161	24426161	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152496708	152496708	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204948557	204948557	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204948557	204948557	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47892633	47892633	+	Silent	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47892633	47892633	+	Silent	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236205495	236205495	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827176	5827176	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827175	5827176	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55451720	55451720	+	Missense_Mutation	SNP	C	T	T	rs61746625	byFrequency;by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOXA1	10811	broad.mit.edu	37	9	140327948	140327948	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129317693	129317693	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129317702	129317702	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129317693	129317693	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129317702	129317702	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2937233	2937233	+	Intron	SNP	G	A	A	rs112130916		TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN6	221078	broad.mit.edu	37	10	18937479	18937479	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN6	221078	broad.mit.edu	37	10	18937479	18937479	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113444410	113444410	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228547306	228547306	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28202874	28202874	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28211923	28211923	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28202874	28202874	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28211923	28211923	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183664320	183664320	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183664320	183664320	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50959811	50959811	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694783	247694783	+	3'UTR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247694783	247694783	+	3'UTR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371624	55371624	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371624	55371624	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5444131	5444131	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51Q1	390061	broad.mit.edu	37	11	5444131	5444131	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969183	5969183	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969183	5969183	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55889777	55889777	+	5'Flank	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55889777	55889777	+	5'Flank	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSM	5008	broad.mit.edu	37	22	30660800	30660800	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25444777	25444777	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP11	57097	broad.mit.edu	37	12	3938098	3938098	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP11	57097	broad.mit.edu	37	12	3938098	3938098	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140431299	140431299	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140431299	140431299	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503320	140503320	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553584	140553584	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553584	140553584	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47783764	47783764	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233134066	233134066	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142539807	142539807	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK4	54760	broad.mit.edu	37	19	1483662	1483662	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6B	5158	broad.mit.edu	37	4	657856	657856	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD8	118987	broad.mit.edu	37	10	119043731	119043731	+	Missense_Mutation	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI3	246330	broad.mit.edu	37	11	66239989	66239989	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10459252	10459252	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF12	57649	broad.mit.edu	37	17	27235901	27235901	+	Splice_Site	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46913983	46913983	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF16	9767	broad.mit.edu	37	X	46913983	46913983	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75756265	75756266	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75756265	75756266	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	515659	515659	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	515659	515659	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160001137	160001137	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160001137	160001137	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46511639	46511639	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15408262	15408262	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15408262	15408262	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59812275	59812275	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8678179	8678179	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8678179	8678179	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64029532	64029532	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129308193	129308193	+	Splice_Site	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMEPA1	56937	broad.mit.edu	37	20	56227472	56227472	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108113084	108113084	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86305044	86305044	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86305044	86305044	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2A	8611	broad.mit.edu	37	5	54826139	54826139	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203030093	203030093	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203030093	203030093	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47305395	47305395	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186277527	186277527	+	Silent	SNP	T	C	C	rs75928540	byFrequency	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT7	54496	broad.mit.edu	37	16	68386197	68386197	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10395959	10395959	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10395959	10395959	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150998175	150998175	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150998175	150998175	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88935340	88935340	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944253	40944253	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113559391	113559391	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178310650	178310650	+	5'UTR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110882847	110882847	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36112407	36112407	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36112407	36112407	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204126309	204126309	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204126309	204126309	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85577259	85577260	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOU	58480	broad.mit.edu	37	1	228873641	228873641	+	Intron	DEL	T	-	-	rs35672194		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93118640	93118640	+	Nonsense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177570722	177570722	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177570722	177570722	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25338251	25338251	+	5'Flank	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25338251	25338251	+	5'Flank	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROMO1	140823	broad.mit.edu	37	20	34288862	34288862	+	3'UTR	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL4	6124	broad.mit.edu	37	15	66797165	66797165	+	5'UTR	DEL	G	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35827457	35827457	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35827584	35827584	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35827457	35827457	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35827584	35827584	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPP25	54913	broad.mit.edu	37	15	75248342	75248342	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPP40	10799	broad.mit.edu	37	6	4996626	4996626	+	Nonsense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH6A	81492	broad.mit.edu	37	19	46305469	46305469	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTBDN	83546	broad.mit.edu	37	19	12939476	12939476	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237995884	237995884	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237843724	237843724	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237995884	237995884	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33822772	33822772	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33822772	33822772	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100PBP	64766	broad.mit.edu	37	1	33321432	33321432	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101705580	101705580	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134990427	134990427	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30BP	29115	broad.mit.edu	37	17	73689542	73689542	+	Missense_Mutation	SNP	G	C	C	rs150596591	byFrequency	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30BP	29115	broad.mit.edu	37	17	73689542	73689542	+	Missense_Mutation	SNP	G	C	C	rs150596591	byFrequency	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55753421	55753421	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCFD2	152579	broad.mit.edu	37	4	53740094	53740094	+	3'UTR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCBP2	27111	broad.mit.edu	37	20	1298989	1298989	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249672	102249672	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156128696	156128696	+	Intron	SNP	C	T	T	rs148736973	by1000genomes	TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122629997	122629997	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56598327	56598327	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61231205	61231205	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61231205	61231205	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB3	6317	broad.mit.edu	37	18	61327902	61327902	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29908968	29908968	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26694878	26694878	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26747039	26747039	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26694878	26694878	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26747039	26747039	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS11	9295	broad.mit.edu	37	1	70687463	70687463	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS11	9295	broad.mit.edu	37	1	70687463	70687463	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPC	6440	broad.mit.edu	37	8	22019351	22019351	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM1	129049	broad.mit.edu	37	22	25263006	25263006	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28878061	28878061	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41086690	41086690	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20016680	20016680	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20016680	20016680	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A4	6583	broad.mit.edu	37	5	131630701	131630701	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A1	376497	broad.mit.edu	37	19	17612097	17612097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A1	376497	broad.mit.edu	37	19	17612097	17612097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC32A1	140679	broad.mit.edu	37	20	37356290	37356290	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A1	10559	broad.mit.edu	37	6	88218187	88218187	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A1	10559	broad.mit.edu	37	6	88218187	88218187	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31833121	31833121	+	Silent	SNP	C	T	T	rs142009471		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A4	80736	broad.mit.edu	37	6	31833121	31833121	+	Silent	SNP	C	T	T	rs142009471		TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108626979	108626979	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85266387	85266387	+	Silent	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85266387	85266387	+	Silent	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49812634	49812634	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49812634	49812634	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55728142	55728142	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A1	6548	broad.mit.edu	37	1	27426971	27426971	+	Missense_Mutation	SNP	C	T	T	rs140504210	byFrequency	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101631628	101631628	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101631628	101631628	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328774	88328774	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328774	88328774	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70352019	70352019	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70352231	70352231	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP47	116841	broad.mit.edu	37	1	227946805	227946805	+	Missense_Mutation	SNP	C	T	T	rs143092410	byFrequency	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108434855	108434855	+	Missense_Mutation	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108521457	108521457	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108521457	108521457	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231033728	231033728	+	3'UTR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231033728	231033728	+	3'UTR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123599915	123599915	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123599915	123599915	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64940248	64940248	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON2	10417	broad.mit.edu	37	4	1164242	1164243	+	Frame_Shift_Ins	INS	-	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158632848	158632848	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64521497	64521497	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64521497	64521497	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35470094	35470094	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRP54	6729	broad.mit.edu	37	14	35470094	35470094	+	Intron	SNP	T	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC1	55808	broad.mit.edu	37	17	74622174	74622174	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT6	6778	broad.mit.edu	37	12	57496712	57496712	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT6	6778	broad.mit.edu	37	12	57496712	57496712	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146657786	146657786	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN4	29888	broad.mit.edu	37	19	47228395	47228395	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUZ12	23512	broad.mit.edu	37	17	30310289	30310289	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85431864	85431864	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85431864	85431864	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37985773	37985773	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120818424	120818424	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120818424	120818424	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162036261	162036261	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797631	32797631	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R31	259290	broad.mit.edu	37	12	11183906	11183907	+	Frame_Shift_Ins	INS	-	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20846397	20846397	+	Splice_Site	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEPP	374739	broad.mit.edu	37	16	58011792	58011792	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPT	29844	broad.mit.edu	37	19	54617692	54617692	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100225837	100225837	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100225837	100225837	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP2	83591	broad.mit.edu	37	12	72058389	72058389	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52972446	52972446	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP3	7078	broad.mit.edu	37	22	33255454	33255454	+	3'UTR	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF19	116211	broad.mit.edu	37	3	196050777	196050777	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF19	116211	broad.mit.edu	37	3	196050777	196050777	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94808055	94808055	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68934242	68934242	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57080108	57080108	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57080108	57080108	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNMD	64102	broad.mit.edu	37	X	99854065	99854065	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNMD	64102	broad.mit.edu	37	X	99854065	99854065	+	Silent	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74957833	74957833	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049473	175049473	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049473	175049473	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM70A	9868	broad.mit.edu	37	3	100100548	100100548	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM70A	9868	broad.mit.edu	37	3	100100548	100100548	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578433	7578433	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578433	7578433	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122828657	122828657	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122828657	122828657	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73458031	73458031	+	Missense_Mutation	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN3	10099	broad.mit.edu	37	15	77348204	77348204	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN3	10099	broad.mit.edu	37	15	77348204	77348204	+	Missense_Mutation	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK3	81629	broad.mit.edu	37	1	32829545	32829545	+	Silent	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK3	81629	broad.mit.edu	37	1	32829545	32829545	+	Silent	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43225669	43225669	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC16	158248	broad.mit.edu	37	9	130479208	130479208	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75056951	75056951	+	Intron	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL13	440307	broad.mit.edu	37	15	90800274	90800274	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30459127	30459127	+	Intron	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30458833	30458833	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179643948	179643948	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179643948	179643948	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2J1	51465	broad.mit.edu	37	6	90062268	90062268	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157000038	157000038	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17728417	17728417	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54305729	54305729	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54305729	54305729	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229794951	229794952	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113672136	113672136	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6189291	6189291	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11941942	11941942	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11941942	11941942	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50731407	50731407	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144811456	144811456	+	Intron	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385728	42385743	+	IGR	DEL	AATCATCATCAAATCA	-	-	rs67183761		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42390479	42390479	+	IGR	DEL	G	-	-	rs72505278		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42392302	42392302	+	IGR	DEL	G	-	-	rs72505279		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42393635	42393635	+	IGR	DEL	G	-	-	rs75146682		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6335090	6335090	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18994106	18994106	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007740	49007740	+	IGR	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064224	56064224	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6149821	6149821	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94647116	94647116	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34402623	34402623	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625616	61625616	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36523438	36523438	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59295151	59295151	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210248	27210248	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60257842	60257842	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76039698	76039698	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399582	32399582	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34331079	34331079	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18741325	18741325	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834735	51834735	+	IGR	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714406	51714406	+	IGR	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469651	104469651	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120039055	120039055	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	231253634	231253634	+	IGR	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605018	248605018	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	2586371	2586371	+	IGR	DEL	C	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46247293	46247293	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874031	29874031	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15310364	15310364	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15385852	15385852	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181803723	181803723	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81425929	81425929	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135657150	135657150	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	103382381	103382381	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117519505	117519505	+	IGR	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165836899	165836899	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451770	15451770	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	76296048	76296048	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127085498	127085498	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31254136	31254136	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44170404	44170404	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147133788	147133788	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51665456	51665456	+	IGR	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63264531	63264531	+	IGR	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74965150	74965150	+	IGR	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	6335090	6335090	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18994106	18994106	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49003100	49003101	+	IGR	INS	-	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064224	56064224	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6149821	6149821	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94647116	94647116	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34402623	34402623	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55677957	55677957	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625616	61625616	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807142	19807142	+	IGR	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	35943763	35943771	+	IGR	DEL	CTTCCTCTT	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	36523438	36523438	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44546925	44546925	+	IGR	SNP	G	A	A	rs113968810	by1000genomes	TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45333881	45333881	+	IGR	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	27210248	27210248	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60257842	60257842	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80044406	80044406	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32390502	32390502	+	IGR	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33404805	33404805	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34331079	34331079	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52780488	52780488	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60314278	60314278	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	34512744	34512744	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714406	51714406	+	IGR	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469651	104469651	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120039055	120039055	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	231253634	231253634	+	IGR	DEL	C	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	46247293	46247293	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874031	29874031	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16651907	16651907	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132376626	132376626	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737842	181737842	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181803723	181803723	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239643990	239643990	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57275855	57275855	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113822395	113822395	+	IGR	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	103382381	103382381	+	IGR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577847	165577847	+	IGR	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165578217	165578217	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165836899	165836899	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330504	130330504	+	IGR	DEL	C	-	-			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451770	15451770	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160885367	160885367	+	IGR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	76296048	76296048	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65904248	65904248	+	IGR	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127085498	127085498	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89498205	89498205	+	IGR	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	31254136	31254136	+	IGR	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44170404	44170404	+	IGR	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48017707	48017707	+	IGR	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51665456	51665456	+	IGR	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63264531	63264531	+	IGR	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82816704	82816704	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35059557	35059557	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35059557	35059557	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51440599	51440599	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51440599	51440599	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62254661	62254661	+	Missense_Mutation	SNP	T	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122748723	122748723	+	Silent	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54545619	54545619	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54545619	54545619	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASL	8976	broad.mit.edu	37	7	123332372	123332372	+	Intron	SNP	T	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128482333	128482333	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128482333	128482333	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20182143	20182143	+	Intron	SNP	T	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37727024	37727024	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190334005	190334005	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38205058	38205058	+	Missense_Mutation	SNP	C	T	T	rs142206759		TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30989875	30989875	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XK	7504	broad.mit.edu	37	X	37587670	37587670	+	Silent	SNP	T	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XK	7504	broad.mit.edu	37	X	37587678	37587678	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47593135	47593136	+	Intron	INS	-	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617598	77617598	+	Silent	SNP	C	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617600	77617600	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58380428	58380428	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58380428	58380428	+	Intron	SNP	A	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20608525	20608525	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20608525	20608525	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18297556	18297556	+	3'UTR	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18297556	18297556	+	3'UTR	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF138	7697	broad.mit.edu	37	7	64293189	64293189	+	3'UTR	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF141	7700	broad.mit.edu	37	4	367007	367007	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF141	7700	broad.mit.edu	37	4	367007	367007	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53576594	53576594	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53589517	53589517	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53576594	53576594	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53589517	53589517	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154332	22154332	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154332	22154332	+	Silent	SNP	G	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44351558	44351558	+	Missense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44541963	44541963	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF445	353274	broad.mit.edu	37	3	44541963	44541963	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512B	57473	broad.mit.edu	37	20	62596353	62596353	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934318	30934318	+	Intron	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36967453	36967453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36967453	36967453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208732	53208732	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208732	53208732	+	Missense_Mutation	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71631126	71631126	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99171066	99171066	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99171066	99171066	+	Silent	SNP	C	T	T			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22375756	22375756	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22375756	22375756	+	Intron	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF70	7621	broad.mit.edu	37	22	24087099	24087099	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF70	7621	broad.mit.edu	37	22	24087099	24087099	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185800483	185800483	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185800483	185800483	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDA	7789	broad.mit.edu	37	X	57935583	57935583	+	Silent	SNP	G	A	A			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22446767	22446767	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102292930	102292930	+	Intron	SNP	A	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25425834	25425834	+	5'Flank	SNP	C	A	A			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45137263	45137263	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29173968	29173968	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186678562	186678562	+	RNA	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15035824	15035824	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	823	823	+	5'Flank	SNP	A	G	G			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22446767	22446767	+	Intron	SNP	C	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45137263	45137263	+	Intron	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29173968	29173968	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186678562	186678562	+	RNA	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89292382	89292382	+	RNA	SNP	G	C	C			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15035824	15035824	+	Intron	SNP	A	G	G			TCGA-55-1594-01A-01W-0928-08	TCGA-55-1594-11A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178520	17178520	+	RNA	SNP	C	T	T			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
