Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SPEN	23013	broad.mit.edu	36	1	16131779	16131779	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16131779	16131779	SPEN	1	G	G	A	40
HSPG2	3339	broad.mit.edu	36	1	22077668	22077668	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	22077668	22077668	HSPG2	1	G	G	T	42
PAFAH2	5051	broad.mit.edu	36	1	26175832	26175832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26175832	26175832	PAFAH2	1	C	C	T	19
FAM167B	84734	broad.mit.edu	36	1	32485670	32485670	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32485670	32485670	FAM167B	1	G	G	T	43
LRRC8C	84230	broad.mit.edu	36	1	89952291	89952291	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89952291	89952291	LRRC8C	1	T	T	G	53
NPL	80896	broad.mit.edu	36	1	181054357	181054357	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	181054357	181054357	NPL	1	G	G	A	45
NUP133	55746	broad.mit.edu	36	1	227697889	227697889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	227697889	227697889	NUP133	1	C	C	T	31
OR2T5	401993	broad.mit.edu	36	1	246718638	246718638	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	246718638	246718638	OR2T5	1	G	G	C	40
C11orf24	53838	broad.mit.edu	36	11	67786710	67786711	+	Missense_Mutation	DNP	AC	AC	GA	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	67786710	67786711	C11orf24	11	AC	AC	GA	6
RECQL	5965	broad.mit.edu	36	12	21517783	21517783	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21517783	21517783	RECQL	12	G	G	T	48
H1FNT	341567	broad.mit.edu	36	12	47010040	47010040	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	47010040	47010040	H1FNT	12	G	G	A	33
MYL6	4637	broad.mit.edu	36	12	54839636	54839636	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	54839636	54839636	MYL6	12	A	A	G	7
WIF1	11197	broad.mit.edu	36	12	63757792	63757792	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	63757792	63757792	WIF1	12	C	C	T	18
KIAA0564	23078	broad.mit.edu	36	13	41305524	41305524	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	41305524	41305524	KIAA0564	13	C	C	T	27
SLITRK1	114798	broad.mit.edu	36	13	83352756	83352756	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	83352756	83352756	SLITRK1	13	C	C	A	24
NUMB	8650	broad.mit.edu	36	14	72813185	72813185	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72813185	72813185	NUMB	14	T	T	C	57
AHNAK2	113146	broad.mit.edu	36	14	104479038	104479038	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	104479038	104479038	AHNAK2	14	G	G	T	47
NPRL3	8131	broad.mit.edu	36	16	90411	90411	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	90411	90411	NPRL3	16	C	C	T	29
MAPK8IP3	23162	broad.mit.edu	36	16	1757828	1757828	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1757828	1757828	MAPK8IP3	16	C	C	T	30
ZNF434	54925	broad.mit.edu	36	16	3380121	3380121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3380121	3380121	ZNF434	16	C	C	T	19
ERCC4	2072	broad.mit.edu	36	16	13937037	13937037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13937037	13937037	ERCC4	16	G	G	A	38
GGA2	23062	broad.mit.edu	36	16	23388842	23388842	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	23388842	23388842	GGA2	16	G	G	T	45
KIAA0664	23277	broad.mit.edu	36	17	2551228	2551228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2551228	2551228	KIAA0664	17	G	G	C	45
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	C	T	23
MBTD1	54799	broad.mit.edu	36	17	46625164	46625164	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	46625164	46625164	MBTD1	17	T	T	C	60
TXNDC2	84203	broad.mit.edu	36	18	9877220	9877220	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	9877220	9877220	TXNDC2	18	G	G	A	34
CEP192	55125	broad.mit.edu	36	18	13049273	13049273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13049273	13049273	CEP192	18	G	G	A	40
ZNF846	162993	broad.mit.edu	36	19	9729185	9729185	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	9729185	9729185	ZNF846	19	T	T	C	64
ZNF14	7561	broad.mit.edu	36	19	19684594	19684594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19684594	19684594	ZNF14	19	C	C	T	20
KCNN4	3783	broad.mit.edu	36	19	48976695	48976695	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48976695	48976695	KCNN4	19	C	C	T	23
ZC3H4	23211	broad.mit.edu	36	19	52262365	52262365	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	52262365	52262365	ZC3H4	19	C	C	T	23
NLRP11	204801	broad.mit.edu	36	19	60999429	60999429	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	60999429	60999429	NLRP11	19	C	C	A	28
PTPN4	5775	broad.mit.edu	36	2	120439567	120439567	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120439567	120439567	PTPN4	2	C	C	G	29
AGPS	8540	broad.mit.edu	36	2	178010001	178010001	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	178010001	178010001	AGPS	2	C	C	A	27
CST7	8530	broad.mit.edu	36	20	24885932	24885932	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24885932	24885932	CST7	20	C	C	A	30
ASXL1	171023	broad.mit.edu	36	20	30420578	30420578	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30420578	30420578	ASXL1	20	C	C	T	29
MYH7B	57644	broad.mit.edu	36	20	33051880	33051880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33051880	33051880	MYH7B	20	G	G	C	34
SS18L1	26039	broad.mit.edu	36	20	60183019	60183019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	60183019	60183019	SS18L1	20	G	G	A	42
GMEB2	26205	broad.mit.edu	36	20	61721179	61721179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61721179	61721179	GMEB2	20	C	C	T	19
RNF160	26046	broad.mit.edu	36	21	29246387	29246387	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29246387	29246387	RNF160	21	C	C	T	29
SMARCB1	6598	broad.mit.edu	36	22	22497603	22497604	+	Splice_Site_SNP	DNP	GT	GT	AC	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	DNP	22497603	22497604	SMARCB1	22	GT	GT	AC	44
NCAPH2	29781	broad.mit.edu	36	22	49307644	49307644	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	49307644	49307644	NCAPH2	22	G	G	T	45
HDAC11	79885	broad.mit.edu	36	3	13517290	13517290	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	13517290	13517290	HDAC11	3	G	G	C	44
DNAH1	25981	broad.mit.edu	36	3	52398530	52398530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52398530	52398530	DNAH1	3	C	C	T	19
ZMAT3	64393	broad.mit.edu	36	3	180268015	180268015	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	180268015	180268015	ZMAT3	3	G	G	C	36
NPFFR2	10886	broad.mit.edu	36	4	73213311	73213311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73213311	73213311	NPFFR2	4	A	A	G	4
CDH10	1008	broad.mit.edu	36	5	24523914	24523914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24523914	24523914	CDH10	5	C	C	T	18
ACTBL2	345651	broad.mit.edu	36	5	56813689	56813689	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56813689	56813689	ACTBL2	5	G	G	T	45
ACTBL2	345651	broad.mit.edu	36	5	56813808	56813808	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56813808	56813808	ACTBL2	5	G	G	T	45
RGL2	5863	broad.mit.edu	36	6	33369221	33369221	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33369221	33369221	RGL2	6	C	C	T	21
CLVS2	134829	broad.mit.edu	36	6	123360735	123360735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	123360735	123360735	CLVS2	6	C	C	T	29
HIVEP2	3097	broad.mit.edu	36	6	143137420	143137420	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	143137420	143137420	HIVEP2	6	A	A	G	16
LAMB4	22798	broad.mit.edu	36	7	107539614	107539614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107539614	107539614	LAMB4	7	C	C	T	25
IQUB	154865	broad.mit.edu	36	7	122888709	122888709	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	122888709	122888709	IQUB	7	G	G	A	45
C9orf11	54586	broad.mit.edu	36	9	27276331	27276331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27276331	27276331	C9orf11	9	T	T	A	64
FAM166B	730112	broad.mit.edu	36	9	35552533	35552533	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	35552533	35552533	FAM166B	9	C	C	G	23
PGK1	5230	broad.mit.edu	36	X	77255900	77255900	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1993-01	TCGA-57-1993-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77255900	77255900	PGK1	23	T	T	G	61
